Params: ./cmzasha --no-stderr --filter 100 12 Rfam/cm/RF00173.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00173_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: boudin.cs.washington.edu pid: 1748 ----cmFile: Rfam/cm/RF00173.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137680,sp|D00721.1|CHYSATS1 Chicory yellow mottle virus satellite RNA, complete cds. ----isReversed: 1 ----hitSequence: CAACAGCGAAGCGCGCCAGGGAAACACACCAUGUGUGGUAUAUUAUCUGGCA hit 0 : 306 255 (rev) 16.32 bits ::::::::::::::<<<<<-------<<<___>>>----------->>>>>: 1 cAACAGcGAAGcgaaccagaGAAACAcaccuUgugugGUAUAUUAccuggua 52 CAACAGCGAAGCG+:CCAG+GAAACACACC+UGUGUGGUAUAUUA+CUGG:A 152 CAACAGCGAAGCGCGCCAGGGAAACACACCAUGUGUGGUAUAUUAUCUGGCA 203 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #189565,sp|M21212.1|SAM300CG Arabis mosaic virus small satellite RNA, complete genome. ----isReversed: 1 ----hitSequence: CAACAGCGAAGCGGAACGGCGAAACACACCUUGUGUGGUAUAUUACCCGUUG hit 1 : 157 106 (rev) 16.32 bits ::::::::::::::<<<<<-------<<<___>>>----------->>>>>: 1 cAACAGcGAAGcgaaccagaGAAACAcaccuUgugugGUAUAUUAccuggua 52 CAACAGCGAAGCG+A:C:G+GAAACACACCUUGUGUGGUAUAUUACC:G:U+ 144 CAACAGCGAAGCGGAACGGCGAAACACACCUUGUGUGGUAUAUUACCCGUUG 195 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #193436,sp|M14879.1|TRSSATA Tobacco ringspot virus satellite RNA. ----isReversed: 1 ----hitSequence: AAACAGAGAAGUCAACCAGAGAAACACACGUUGUGGUAUAUUACCUGGUA hit 2 : 224 175 (rev) 12.11 bits ::::::::::::::<<<<<-------<<<___>>>----------->>>>>: 1 cAACAGcGAAGcgaaccagaGAAACAcaccuUgugugGUAUAUUAccuggua 52 +AACAG+GAAG++AACCAGAGAAACACAC+UUGUG GUAUAUUACCUGGUA 136 AAACAGAGAAGUCAACCAGAGAAACACACGUUGUG--GUAUAUUACCUGGUA 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #193437,sp|M17439.1|TRSSTO01 Tobacco ringspot virus (TobRV) mRNA. ----isReversed: 1 ----hitSequence: AAACAGAGAAGUCAACCAGAGAAACACACGUUGUGGUAUAUUACCUGGUA hit 3 : 226 177 (rev) 12.11 bits ::::::::::::::<<<<<-------<<<___>>>----------->>>>>: 1 cAACAGcGAAGcgaaccagaGAAACAcaccuUgugugGUAUAUUAccuggua 52 +AACAG+GAAG++AACCAGAGAAACACAC+UUGUG GUAUAUUACCUGGUA 135 AAACAGAGAAGUCAACCAGAGAAACACACGUUGUG--GUAUAUUACCUGGUA 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #195785,sp|D00685.1|UTSSR Chicory yellow mottle virus small satellite RNA. ----isReversed: 1 ----hitSequence: CAACAGCGAAGCGCGCCAGGGAAACACACCAUGUGUGGUAUAUUAUCUGGCA hit 4 : 306 255 (rev) 16.32 bits ::::::::::::::<<<<<-------<<<___>>>----------->>>>>: 1 cAACAGcGAAGcgaaccagaGAAACAcaccuUgugugGUAUAUUAccuggua 52 CAACAGCGAAGCG+:CCAG+GAAACACACC+UGUGUGGUAUAUUA+CUGG:A 152 CAACAGCGAAGCGCGCCAGGGAAACACACCAUGUGUGGUAUAUUAUCUGGCA 203 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=3.10418e-08, 2d-fracLetsThru=1.62674e-08). Filter report: done 1.65905e+10 nucs (frac lets thru so far=3.10418e-08, 2d-fracLetsThru=1.62674e-08). done 1.65905e+10 nucs (frac lets thru so far=3.10418e-08, 2d-fracLetsThru=1.62674e-08). CPU time: 148825.68u 227.42s 41:24:13.10 Elapsed: 41:33:06