params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5462,AC007694.6,1,sp|AC007694.6|AC007694 Drosophila melanogaster; chromosome 3R; region 89A-89A; BAC clone BACR17O24; complete sequence.,0,0,38187,38253,10.07,UAUCUUUAGCGUCGAGUCUUUGGGUUAAGUCUACCACUUGUUUCGUUCGAUUGAUUUAUUGAAUAGU,**** NEW HIT #0 ****,,2,0,AC007694.6/38187-38253 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6736,AC093547.3,1,sp|AC093547.3|AC093547 Drosophila melanogaster 3L BAC RP98-2K11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.,0,1,71367,71443,4.07,GCAGAUUAGUGUUUGGAUUAAAAAAAAUUGAGUUAAACUCUACUCGGUAGUUGUCAGGUUCUGAACCAUUGAAAGUA,**** NEW HIT #1 ****,,2,0,AC093547.3/71367-71443 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6984,AC129948.3,1,sp|AC129948.3|AC129948 Branchiostoma floridae; clone -33B4; complete sequence.,0,2,4704,4776,4.13,UAACAUUAGGGUUAGGCCUAGGGUUGUAAUUAUCUGACUGAAAGUACCAGUAAGACUUGACAGACUGCUUGUG,**** NEW HIT #2 ****,,2,0,AC129948.3/4704-4776 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7614,AE003598.2,1,sp|AE003598.2|AE003598 Drosophila melanogaster chromosome 3L; section 79 of 83 of the complete sequence.,0,3,11735,11811,4.07,GCAGAUUAGUGUUUGGAUUAAAAAAAAUUGAGUUAAACUCUACUCGGUAGUUGUCAGGUUCUGAACCAUUGAAAGUA,**** NEW HIT (duplicate of new hit #1) ****,,2,0,AE003598.2/11735-11811 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7725,AE003709.3,1,sp|AE003709.3|AE003709 Drosophila melanogaster chromosome 3R; section 47 of 118 of the complete sequence.,0,4,93174,93240,10.07,UAUCUUUAGCGUCGAGUCUUUGGGUUAAGUCUACCACUUGUUUCGUUCGAUUGAUUUAUUGAAUAGU,**** NEW HIT (duplicate of new hit #0) ****,,2,0,AE003709.3/93174-93240 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44183,Z81088.1,1,sp|Z81088.1|CEF53F1 Caenorhabditis elegans cosmid F53F1,1,5,36233,36151,5.08,CCAUUUUAGCACCUGCAUUAUCUCCUAUCACGUAUUUAUACUUUGUUCGACCGUAUCGUCAGAACGUGAAGAGAUUUAUUGCA,**** NEW HIT #5 ****,,2,0,Z81088.1/36233-36151 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,16019,AL929357.1,1,sp|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7; chromosome 9; segment 3/5,0,6,87314,87386,4.37,ACAUUUUAUCGUCGUAUGAGGUAAGAUGUCAAAAUGUUGAGGGAUUUUAUCCUUCAAUAAACUAUUCAUUGUU,**** NEW HIT #6 ****,,2,0,AL929357.1/87314-87386 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4727,AC069561.37,1,sp|AC069561.37|AC069561 Mus musculus chromosome 9 clone rp23-263o15 strain C57BL/6J; complete sequence.,0,7,134593,134665,4.27,GCUCUAUAGCAGCACCCGGUUUAAGGCUAUAACUUUGAUCAGUCUAUAGCCAGUCUUUAACUCAAGGCAUGUU,**** NEW HIT #7 ****,,2,0,AC069561.37/134593-134665 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,7482,AC132600.3,1,sp|AC132600.3|AC132600 Mus musculus chromosome 3 clone RP24-134A5; complete sequence.,0,8,49709,49778,4.11,AAUUUUUAAGGUUAUGGAUGUCUAAUAAGCAUUUGGGGUAUGUUUAGACUUCUAUUACAUAUGAAUUGUU,**** NEW HIT #8 ****,,2,0,AC132600.3/49709-49778 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24838,AL669834.10,1,sp|AL669834.10|AL669834 Mouse DNA sequence from clone RP23-114O4 on chromosome 4,1,9,3038,2967,4.38,UCACUUUCUAGUCAGGAUUACUAGAAAGGUAAGCUCUUGCCUGUGUUUGGCUUCUCUCUUCUACUGAACAUA,**** NEW HIT #9 ****,,2,0,AL669834.10/3038-2967 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25068,AL671877.15,1,sp|AL671877.15|AL671877 Mouse DNA sequence from clone RP23-214E3 on chromosome 3,0,10,125984,126055,5.82,UCACUUUGGGGAAAUGCCUAUGCAAGUCAAGUCUUAAGUCAUUUUUGGAGAUUGAUUGAUUGAUUGAUUGAU,**** NEW HIT #10 ****,,2,0,AL671877.15/125984-126055 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26334,AL808102.8,1,sp|AL808102.8|AL808102 Mouse DNA sequence from clone RP23-192O6 on chromosome 2,0,11,172691,172765,6.47,UCUUUCUAGAGAUAGGGUUUGAUACACAGCAAAAUAUGGUAGGAAGUUUCCACAGCCCUUAUUUAACUGAGUGUG,**** NEW HIT #11 ****,,2,0,AL808102.8/172691-172765 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99800,AF422881.1,1,sp|AF422881.1|AF422881 Octodon degus clone BM727 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,12,73,140,4.88,GUUCUUUAAAUAAGGACUAGUAUGAACGGCUUGACGAGGAUUUAACUGUCUCUUGCUUAUAGUCUGUG,**** NEW HIT #12 ****,,2,0,AF422881.1/73-140 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99804,AF422885.1,1,sp|AF422885.1|AF422885 Clyomys laticeps clone CIT 1235 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,13,97,164,5.82,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUACUUAUAGUCAGUG,**** NEW HIT #13 ****,,2,0,AF422885.1/97-164 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99807,AF422888.1,1,sp|AF422888.1|AF422888 Euryzygomatomys guiara clone SU 73 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,14,101,168,4.70,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUACUUACAGUCAGUG,**** NEW HIT #14 ****,,2,0,AF422888.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99810,AF422891.1,1,sp|AF422891.1|AF422891 Lonchothrix emiliae clone INPA 2472 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,15,100,167,4.53,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUACUUACGGUCAGUG,**** NEW HIT #15 ****,,2,0,AF422891.1/100-167 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99811,AF422892.1,1,sp|AF422892.1|AF422892 Mesomys occultus clone JUR 501 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,16,101,168,5.65,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUACUUAUGGUCAGUG,**** NEW HIT #16 ****,,2,0,AF422892.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99812,AF422893.1,1,sp|AF422893.1|AF422893 Mesomys occultus clone MNFS 201 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,17,101,168,5.65,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUACUUAUGGUCAGUG,**** NEW HIT (duplicate of new hit #16) ****,,2,0,AF422893.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99813,AF422894.1,1,sp|AF422894.1|AF422894 Mesomys hispidus clone MNFS 436 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,18,101,168,4.53,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUACUUACGGUCAGUG,**** NEW HIT (duplicate of new hit #15) ****,,2,0,AF422894.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99814,AF422895.1,1,sp|AF422895.1|AF422895 Mesomys hispidus clone MNFS 745 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,19,101,168,4.53,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUACUUACGGUCAGUG,**** NEW HIT (duplicate of new hit #15) ****,,2,0,AF422895.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99818,AF422899.1,1,sp|AF422899.1|AF422899 Trinomys yonenagae clone PEU 880027 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,20,102,169,4.70,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUGCUUACAGUCAGUG,**** NEW HIT #20 ****,,2,0,AF422899.1/102-169 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99819,AF422900.1,1,sp|AF422900.1|AF422900 Trinomys paratus clone YL 34 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,21,101,168,4.37,GUUCUUUAAAUAGGGACUAGUAUGAAAGGCUAGACGAGGGUUUAACUGUCUCCUGCUUACAGUCAGUG,**** NEW HIT #21 ****,,2,0,AF422900.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99822,AF422903.1,1,sp|AF422903.1|AF422903 Trinomys eliasi clone ML 141 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,22,101,168,4.37,GUUCUUUAAAUAGGGACUAGUAUGAAAGGCUAGACGAGGGUUUAACUGUCUCCUGCUUACAGUCAGUG,**** NEW HIT (duplicate of new hit #21) ****,,2,0,AF422903.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99823,AF422904.1,1,sp|AF422904.1|AF422904 Trinomys setosus denigratus clone MNRJ 31441 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial pro,0,23,101,168,5.82,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUGCUUAUAGUCAGUG,**** NEW HIT #23 ****,,2,0,AF422904.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99824,AF422905.1,1,sp|AF422905.1|AF422905 Trinomys setosus elegans clone MNRJ 31448 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial produc,0,24,101,168,5.82,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUGCUUAUAGUCAGUG,**** NEW HIT (duplicate of new hit #23) ****,,2,0,AF422905.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,99825,AF422906.1,1,sp|AF422906.1|AF422906 Trinomys setosus setosus clone AL 3072 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,0,25,101,168,5.82,GUUCUUUAAAUAAGGACUAGUAUGAAAGGCUUGACGAGGGUUUAACUGUCUCUUGCUUAUAGUCAGUG,**** NEW HIT (duplicate of new hit #23) ****,,2,0,AF422906.1/101-168 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,200158,X03793.1,1,sp|X03793.1|MINCURF2 Neurospora crassa mitochondrial URF downstream of tRNA-Met(m) gene,0,26,1408,1469,4.99,UUUCUUUUGCGGGUAUUCCGCCUCUUGUAGGGUUUUUUGCCAAACAGAUGGUAUUGAGUGCU,**** NEW HIT #26 ****,,2,0,X03793.1/1408-1469 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,115331,AJ531611.1,1,sp|AJ531611.1|ATH531611 Arabidopsis thaliana T-DNA flanking sequence; left border; clone 238D09,0,27,635,702,5.31,AAUUGUUAUCGUUGGGACAUGAAUAAGAUCUGGAUCUUGUAUCGGAGAUCAGUUUAUCAAGUAGAAUU,**** NEW HIT #27 ****,,2,0,AJ531611.1/635-702 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,11418,AB079134.1,1,sp|AB079134.1|AB079134 Vibrio parahaemolyticus retron element and yabA; orf560; orf218 genes for reverse transcriptase; hypothetical ATP-binding prote,0,28,692,757,28.24,GCUCUUUAGCUUAGGACGAAUUUCGUCUAGUCGGGUGAUUAGCCAGACUCUAACUUAUUGAACGGG,AB079134.1/692-757,692-757,0,65,AB079134.1/692-757 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,19082,AE004309.1,1,sp|AE004309.1|AE004309 Vibrio cholerae chromosome I; section 217 of 251 of the complete chromosome.,0,29,1945,2015,32.92,GCUCUUUAGCGAAUGGACUACACAUAUUAGUCUAGUCGGGCGUUUAGCCAGACUGAAAUUUAUUGAACGAC,AE004309.1/1945-2015 AJ249205.1/1092-1162,1945-2015,0,70,AE004309.1/1945-2015 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21444,AE006696.1,1,sp|AE006696.1|AE006696 Sulfolobus solfataricus section 55 of 272 of the complete genome.,0,30,3878,3950,4.06,UCUUCUUUUCGACGAGGCUAUAUUCUUUAACCUCUCUUCGUACUUUUCGACGAGGCUUAUCUUAUUGAUUAUU,**** NEW HIT #28 ****,,2,0,AE006696.1/3878-3950 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23604,AE008879.1,1,sp|AE008879.1|AE008879 Salmonella typhimurium LT2; section 183 of 220 of the complete genome.,0,31,8721,8790,37.61,ACUCUUUAGCGUUAGGCUUUGAUUUAUAGCCUUGUCGAGCGUUUCGCCAGACACUAACUUAUUGAGUACU,AF261825.2/44164-44233 AE008879.1/8721-8790,8721-8790,0,69,AE008879.1/8721-8790 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8766,AF261825.2,1,sp|AF261825.2|AF261825 Salmonella enterica subsp. enterica serovar Typhimurium genomic island I; complete sequence.,0,32,44164,44233,37.61,ACUCUUUAGCGUUAGGCUUUGAUUUAUAGCCUUGUCGAGCGUUUCGCCAGACACUAACUUAUUGAGUACU,AF261825.2/44164-44233 AE008879.1/8721-8790,44164-44233,0,69,AF261825.2/44164-44233 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,31920,AF427793.1,1,sp|AF427793.1|AF427793 Nannocystis exedends retron-Ne144; complete sequence.,0,33,1037,1105,4.19,UCAUGACAACGGCGAAGGCCGAGCCUAGCAACCCGGGCGGCGGAUCGCCGUCCUUGCAACAAGCUCGUU,AF427793.1/1037-1105,1037-1105,0,68,AF427793.1/1037-1105 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1027,AP003585.1,1,sp|AP003585.1|AP003585 Nostoc sp. PCC 7120 DNA; complete genome; section 5/19.,0,34,972,1037,4.64,GAGCUUCUGCGUCUGGACUAUGGUGGUCUAGUAAGGCUAUGCCAAGACUAGCACUCACGUAAAGUU,**** NEW HIT #29 ****,,2,0,AP003585.1/972-1037 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1150,AP005278.1,1,sp|AP005278.1|AP005278 Corynebacterium glutamicum ATCC 13032 DNA; complete genome; section 5/10.,0,35,67809,67878,4.48,GCACUUCAGCCAUAGGGUUAACAUGUACAAGCCCGUAGGGGGUUUCCCCACCGAGUUCAGAUUUGUCGUG,**** NEW HIT #30 ****,,2,0,AP005278.1/67809-67878 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,48295,U02551.1,1,sp|U02551.1|EC02551 Escherichia coli Ec 110 reverse transcriptase gene; complete cds.,0,36,12,76,35.95,ACUCUUUAGCGUUGGACGGUUACGUCUAGUCGGGUGAUUAGCCAGACUCUAACUUAUUGAACGUA,U02551.1/12-76,12-76,0,64,U02551.1/12-76 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,1796,X60206.1,1,sp|X60206.1|ECOEXRETA Escherichia coli reverse transcriptase; retron EC86,0,37,2132,2205,20.83,CACCCUUAGCGAGAGGUUUAUCAUUAAGGUCAACCUCUGGAUGUUGUUUCGGCAUCCUGCAUUGAAUCUGAGUU,M24408.1/377-450 X60206.1/2132-2205,2132-2205,0,73,X60206.1/2132-2205 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,2181,Z12832.1,1,sp|Z12832.1|ECPRORET E.coli proA and ret genes encoding gamma-glutamylphosphate reductase and reverse transcriptase,0,38,542,622,22.56,GCUCUUUAGCGUUUUAUGGAUUUACCACCUGAUUGGUCAAAUCUAGUUGGGCGUUGCGCAAACUCUAAUUUAUUGAUUACA,Z12832.1/542-622,542-622,0,80,Z12832.1/542-622 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,2399,M24408.1,1,sp|M24408.1|ECREVTR Escherichia coli B reverse transcriptase required for the formation of a DNA-RNA compound; complete cds.,0,39,377,450,20.83,CACCCUUAGCGAGAGGUUUAUCAUUAAGGUCAACCUCUGGAUGUUGUUUCGGCAUCCUGCAUUGAAUCUGAGUU,M24408.1/377-450 X60206.1/2132-2205,377-450,0,73,M24408.1/377-450 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,2483,X62583.1,1,sp|X62583.1|ECRNEC107 E.coli Retron-Ec107,0,40,626,698,24.28,AAACUUUUUCGAUAGCAUUAGCUGGUUACAGGUCUGGCGUGUGUUUCGCCAGGCCCAGUUGCCACGUAAUGUG,X62583.1/626-698,626-698,0,72,X62583.1/626-698 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13679,U15181.1,1,sp|U15181.1|ML15181 Mycobacterium leprae cosmid B1764.,0,41,20509,20583,4.85,ACUUUUUAUCGAUAGCCUGGAGUGAUUGUAUAGGUCUGGUUGGGGUAUUUAUCGACCGGUAAGCGAAUGCACACU,**** NEW HIT #31 ****,,2,0,U15181.1/20509-20583 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13758,L01536.1,1,sp|L01536.1|MLB1912CS M. leprae genomic dna sequence; cosmid b1912.,0,42,4444,4518,4.85,ACUUUUUAUCGAUAGCCUGGAGUGAUUGUAUAGGUCUGGUUGGGGUAUUUAUCGACCGGUAAGCGAAUGCACACU,**** NEW HIT (duplicate of new hit #31) ****,,2,0,L01536.1/4444-4518 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13831,AL583920.1,1,sp|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10,0,43,204690,204764,4.85,ACUUUUUAUCGAUAGCCUGGAGUGAUUGUAUAGGUCUGGUUGGGGUAUUUAUCGACCGGUAAGCGAAUGCACACU,**** NEW HIT (duplicate of new hit #31) ****,,2,0,AL583920.1/204690-204764 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,33956,Y18930.1,1,sp|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA fragment; strain P2,1,44,127256,127184,4.06,UCUUCUUUUCGACGAGGCUAUAUUCUUUAACCUCUCUUCGUACUUUUCGACGAGGCUUAUCUUAUUGAUUAUU,**** NEW HIT (duplicate of new hit #28) ****,,2,0,Y18930.1/127256-127184 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,49032,AJ249205.1,1,sp|AJ249205.1|VCH249205 Vibrio cholerae ret; abpA and abpB genes and ORF262; ORF206 and ORF149,0,45,1092,1162,32.92,GCUCUUUAGCGAAUGGACUACACAUAUUAGUCUAGUCGGGCGUUUAGCCAGACUGAAAUUUAUUGAACGAC,AE004309.1/1945-2015 AJ249205.1/1092-1162,1092-1162,0,70,AJ249205.1/1092-1162 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,31669,U51652.1,1,sp|U51652.1|BBU51652 Barbus barbus x Barbus meridionalis microsatellite clone no.20.,0,46,584,648,5.44,ACUCUUUNNCNACAGUUUUAUGGGGAUCUGUUGGNCUUUUGGACAAGCCUCACUGAAAGAAAGCC,**** NEW HIT #35 ****,,2,0,U51652.1/584-648 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,36544,BX088719.6,1,sp|BX088719.6|BX088719 Zebrafish DNA sequence from clone CH211-207H2 in linkage group 17,0,47,62687,62760,5.54,AUUUUUUAGCGAGUUGGAAUAUUGUUAAGAUUGUCUAGAUCAGUGUUUCCCAACUCUGUUCCUUAAGGCACACA,**** NEW HIT #36 ****,,2,0,BX088719.6/62687-62760 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,39839,AJ279031.1,1,sp|AJ279031.1|GGA279031 Gallus gallus partial mRNA for teneurin-2 (TEN2 gene); long splice variant,0,48,6427,6496,8.60,GAUCUUUACCGUUAUGAUGAGAUUUCUGGCAAAGUUGAGCAUUUUGGCAAAUUUGGAGUUAUUUAUUAUG,**** NEW HIT #37 ****,,2,0,AJ279031.1/6427-6496 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,541,AC005216.1,1,sp|AC005216.1|AC005216 Homo sapiens chromosome 5; BAC clone 282B7 (LBNL H192); complete sequence.,0,49,111670,111741,4.77,AAUUUUUAGCUGUAGGAUGAGGUCUAAUACCCACCCUGCUUGAGAUUUUCCUAAUCUGCUCUUAUGCAAGCU,**** NEW HIT #38 ****,,2,0,AC005216.1/111670-111741 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8305,AC073538.5,1,sp|AC073538.5|AC073538 Homo sapiens chromosome 5 clone CTD-2338P8; complete sequence.,1,50,40737,40669,5.78,UAACUUCAGCAAUAGAAUUAUACUUUAAAUCUUGGCUGAUUUUUGAAUAGCCAAAAUGUAUUCAUUGUG,**** NEW HIT #39 ****,,2,0,AC073538.5/40737-40669 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,281,AC091887.3,1,sp|AC091887.3|AC091887 Homo sapiens chromosome 5 clone RP11-118M9; complete sequence.,0,51,99718,99789,4.77,AAUUUUUAGCUGUAGGAUGAGGUCUAAUACCCACCCUGCUUGAGAUUUUCCUAAUCUGCUCUUAUGCAAGCU,**** NEW HIT (duplicate of new hit #38) ****,,2,0,AC091887.3/99718-99789 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1363,AC093628.3,1,sp|AC093628.3|AC093628 Homo sapiens BAC clone RP11-98N20 from 4; complete sequence.,0,52,62228,62296,5.17,UCAUGUUAGCUAUAGGCUUUGGGUUCAAAUUCUUAAAUUUCUUUGGUGGUAAUUUGGGCAUUUAAAAUA,**** NEW HIT #41 ****,,2,0,AC093628.3/62228-62296 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1506,AC093808.2,1,sp|AC093808.2|AC093808 Homo sapiens BAC clone RP11-342A1 from 4; complete sequence.,0,53,41442,41511,5.28,CAUCUUUUCCUGAUGGAUGUGUUGAAAGCCUCUCUUUGUGUGUUUCUCAAUAAGUUCCCUAAGGAAAAUU,**** NEW HIT #42 ****,,2,0,AC093808.2/41442-41511 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2488,AC100847.2,1,sp|AC100847.2|AC100847 Homo sapiens chromosome 18; clone RP11-706P11; complete sequence.,0,54,76586,76649,5.42,GAAUUUCAGUGUUGGUAUAUAUUUUUCUAGUCAGUGUAUCGCUGACUCUCCCAUCAACAUUGUU,**** NEW HIT #43 ****,,2,0,AC100847.2/76586-76649 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,7214,AP001862.2,1,sp|AP001862.2|AP001862 Homo sapiens genomic DNA; chromosome 4q22-q24; clone:2060O22.,0,55,16290,16358,5.17,UCAUGUUAGCUAUAGGCUUUGGGUUCAAAUUCUUAAAUUUCUUUGGUGGUAAUUUGGGCAUUUAAAAUA,**** NEW HIT (duplicate of new hit #41) ****,,2,0,AP001862.2/16290-16358 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,9823,AY052369.1,1,sp|AY052369.1|AY052369 Homo sapiens PP2A B56 gamma gene; complete cds; alternative splice products.,0,56,1126,1194,4.72,AUUCUUGUGAGGGAGGACUUGAUUAGCAGCCCUGAAGGGCGGUAGCAGUUCCCUUACUCAUUGAAUGUA,**** NEW HIT #45 ****,,2,0,AY052369.1/1126-1194 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz,3434,AL137779.6,1,sp|AL137779.6|CNS01DWM Human chromosome 14 DNA sequence BAC C-2017C7 of library CalTech-D from chromosome 14 of Homo sapiens (Human),1,57,70535,70467,4.72,AUUCUUGUGAGGGAGGACUUGAUUAGCAGCCCUGAAGGGCGGUAGCAGUUCCCUUACUCAUUGAAUGUA,**** NEW HIT (duplicate of new hit #45) ****,,2,0,AL137779.6/70535-70467 ./cmzasha --no-stderr --filter 120 4 Rfam/cm/RF00170.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00170_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00170.cm (global),/projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz,197,AJ250235.1,1,sp|AJ250235.1|HSA250235 Homo sapiens FECH gene for ferrochelatase; exons 1-11,0,58,35278,35341,5.42,GAAUUUCAGUGUUGGUAUAUAUUUUUCUAGUCAGUGUAUCGCUGACUCUCCCAUCAACAUUGUU,**** NEW HIT (duplicate of new hit #43) ****,,2,0,AJ250235.1/35278-35341 THINGS IN Rfam THAT WEREN'T FOUND: # hits found that weren't in Rfam: 48 (totally new = 48, overlaps hit in Rfam = 0, overlap hits with more than 10 nucs = 0, total # hits with 0 overlap with Rfam (ignoring sequence matching) = 48) # Rfam hits not found: 0 (no overlap of >= 10 nucs: 0) # Rfam seqs not found: 0 (no overlap of >= 10 nucs: too tricky to calculate)