params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7352,AE001373.1,1,sp|AE001373.1|AE001373 Plasmodium falciparum 3D7 chromosome 2 section 10 of 73 of the complete sequence.,0,0,973,1076,29.05,AUGUAUUAUAUAUAAAAUAUAUAUAUAUAUAUAAUGAUAUAUUUUUAAAAAUUUAUAUUAUAUAACCAUAUAUUAUAUAUCAAUAAAAUAAUUAUAUAUAAAUA,**** NEW HIT #0 ****,,2,0,AE001373.1/973-1076 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7870,AE014822.1,1,sp|AE014822.1|AE014822 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.,0,1,188619,188717,25.64,AAAUAAAAAUAAAAAUAUAUAUAUAUAUAUAUAUAAUAUGGAUAAUUUCACUCUUCAGUAGAAUCAUAUGUAUAUUUAUAUAUAUAUAUUAUAAAAUUA,**** NEW HIT #1 ****,,2,0,AE014822.1/188619-188717 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7871,AE014823.1,1,sp|AE014823.1|AE014823 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.,1,2,163328,163235,25.45,AUAAAUAUAUUUAUAUUUUUUUUUAUAUUAUUAUAAUAUGGUUAUAUUAUUUAUACACGUGCAAAGAUAAUUAAAAAGAGGUAUAUUUUAAUUU,**** NEW HIT #2 ****,,2,0,AE014823.1/163328-163235 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7878,AE014830.1,1,sp|AE014830.1|AE014830 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.,1,3,124794,124698,28.50,AUAAAUAAAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUUAUAUGUUUCUAAAAUACAUAUUAUAUAUAUAAUUAUAUUUAUAUAUAUUUUUUUUU,**** NEW HIT #3 ****,,2,0,AE014830.1/124794-124698 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7881,AE014833.1,1,sp|AE014833.1|AE014833 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.,0,4,197627,197726,25.20,UAAUAUAUAUAUAUAUAUACAUAUAUAAUAUAUAUAAUAUGUUUUUAUAUUAUAUACAUAUAUAAUAUAUAUAUGUUUAUAUUUAUAUAAUAUGUUUAUA,**** NEW HIT #4 ****,,2,0,AE014833.1/197627-197726 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7885,AE014837.1,1,sp|AE014837.1|AE014837 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.,1,5,98647,98548,25.19,UUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUAUAUAUGGUACAGAAUAUUCUACAUUAUAUAAUAUAUAUAAUAUAUUUUUACAAAUAAGUUAUUAU,**** NEW HIT #5 ****,,2,0,AE014837.1/98647-98548 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,16013,AL929351.1,1,sp|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7; chromosome 5; segment 1/4,1,6,209327,209231,27.35,AAAAAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGCAUACAUGUUUGUACAUUUUGUAAAAUUAAUACAAUUUAUACAUUUUAUAUUUUUU,**** NEW HIT #6 ****,,2,0,AL929351.1/209327-209231 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6645,AC124515.4,1,sp|AC124515.4|AC124515 Mus musculus chromosome 13 clone RP23-381E19; complete sequence.,1,7,95722,95620,27.21,UUAUAGUAAUACAAUUUUUAUCAUAUAUUUUAUAUUAUAUUUAUACUCUGUUUAUAUAUUAUAACAGAAAUAUAAAAUACUAUGAUUAUAUUUUAUUUAAAUA,**** NEW HIT #7 ****,,2,0,AC124515.4/95722-95620 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,7456,AC132408.2,1,sp|AC132408.2|AC132408 Mus musculus chromosome 18 clone RP23-346A12; complete sequence.,1,8,147805,147705,25.30,UAAAAAAAAAAAAAAAAGCUCUGUUUAAAAUUAGAUCAAAUGUUUUCAGGUUUUUACCAGCUUACAGUAAAUCAUGAAAACAAAGUAUCUUAAAUUUAAAU,**** NEW HIT #8 ****,,2,0,AC132408.2/147805-147705 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,11802,AB084760.1,1,sp|AB084760.1|AB084760 Drosophila simulans mitochondrial DNA; strain:SL61; central part of the A+T-rich region.,1,9,592,494,25.21,UAAAUUAAAUAUAAUAUUAAUAAAUUAUUUUAAUAAUAGUUUUAUUUGUGUGUAUAAAUUAACCAAAAUAAUUAAUAAAAAUUAAAUAAAACAAAUUAU,**** NEW HIT #9 ****,,2,0,AB084760.1/592-494 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,89102,AF379861.1,1,sp|AF379861.1|AF379861 Leptomastix dactylopii 16S ribosomal RNA gene; partial sequence; mitochondrial gene for mitochondrial product.,1,10,239,140,25.11,AUUAUUUAAAUUAUUAAAAUUUAUAUAAAAUUCUAUAGGGUCUUCUCGUCUUUAAAAAAAAUUUAAGAUUUUUAACUUAUAAAUAAAAUUUAAUUUAUUA,**** NEW HIT #10 ****,,2,0,AF379861.1/239-140 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,856,AB008757.1,1,sp|AB008757.1|AB008757 Bacillus stearothermophilus cbaB and cbaA genes for subunit II and subunit I of b(o/a)3-type cytochrome c oxidase; complete cds.,1,11,115,16,78.10,AAUGAAUCACGCUGACUCACUCAUAUAAUCGCAAGAAUACGGCUUGCGAGUCUCUACCAGCCGACCGUAAAUCGGCUGACUAUGAGUGGCAAUGUCAGGA,AB008757.1/115-16,115-16,0,99,AB008757.1/115-16 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,16407,AC069311.6,1,sp|AC069311.6|AC069311 Staphylococcus aureus clone sabac-4; complete sequence.,0,12,6197,6300,73.10,GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG,**** NEW HIT #11 ****,6198-6297,1,102,AC069311.6/6197-6300 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21107,AE006347.1,1,sp|AE006347.1|AE006347 Lactococcus lactis subsp. lactis IL1403 section 109 of 218 of the complete genome.,0,13,1212,1310,71.89,UAGUCUAUAAUAGAACAAUCUUAUUUAUACCUAGGAUAUGGCUGGGCGUUUCUACCUCGUACCGUAAAUGCGAGACAAUAAGGAAAUUCGAUUUUUUAG,AE006347.1/1212-1310,1212-1310,0,98,AE006347.1/1212-1310 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21307,AE006556.1,1,sp|AE006556.1|AE006556 Streptococcus pyogenes M1 GAS strain SF370; section 85 of 167 of the complete genome.,0,14,1276,1370,63.78,UGAAUUCAAUAAUGACAUACUUAUUUAUGCUGUGAAUUGGCGCAGCGUCUCUACAAGACACCUUAAUGUCUAACAAUAAGUAAGCUUUUAGGCUU,AE014152.1/30424-30518 AE006556.1/1276-1370 AE010036.1/1276-1370 AP005144.1/43827-43921,1276-1370,0,94,AE006556.1/1276-1370 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22221,AE007476.1,1,sp|AE007476.1|AE007476 Streptococcus pneumoniae TIGR4 section 159 of 194 of the complete genome.,0,15,6452,6548,64.73,AAAAUUGAAUAUCGUUUUACUUGUUUAUGUCGUGAAUUGGCACGACGUUUCUACAAGGUGCCGGAACACCUAACAAUAAGUAAGUCAGCAGUGAGAU,AE007476.1/6452-6548 AE008531.1/9576-9672,6452-6548,0,96,AE007476.1/6452-6548 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22346,AE007602.1,1,sp|AE007602.1|AE007602 Clostridium acetobutylicum ATCC824 section 90 of 356 of the complete genome.,0,16,8615,8714,77.01,UAUAUAAAAAACUAAAUUUCUCGUAUACACCGGUAAUAUGGUCCGGAAGUUUCUACCUGCUGCCAUAAAUAGCAGACUACGGGGUGUUAUUGAUAAUAUA,AE007602.1/8615-8714,8615-8714,0,99,AE007602.1/8615-8714 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22512,AE007768.1,1,sp|AE007768.1|AE007768 Clostridium acetobutylicum ATCC824 section 256 of 356 of the complete genome.,1,17,1788,1690,78.31,AAUCGUUAAUAUAGUUUAACUCAUAUAUUUCCUGAAUAUGGCAGGAUGUUUCUACAAGGAACCUUAAAUUUCUUACUAUGAGUGAUUUGUUUGUAUGCA,AE007768.1/1788-1690,1788-1690,0,98,AE007768.1/1788-1690 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22519,AE007775.1,1,sp|AE007775.1|AE007775 Clostridium acetobutylicum ATCC824 section 263 of 356 of the complete genome.,1,18,3558,3456,79.79,GAAAAGUAAUAACAUAUUACCCGUAUAUGCUUAGAAAUAUGGUCUAAGCGUCUCUACCGGACUGCCGUAAAUUGUCUGACUAUGGGUGUUUAUAAGUAUUUUA,**** NEW HIT #12 ****,3557-3458,1,100,AE007775.1/3558-3456 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23270,AE008531.1,1,sp|AE008531.1|AE008531 Streptococcus pneumoniae R6 section 147 of 184 of the complete genome.,0,19,9576,9672,64.73,AAAAUUGAAUAUCGUUUUACUUGUUUAUGUCGUGAAUUGGCACGACGUUUCUACAAGGUGCCGGAACACCUAACAAUAAGUAAGUCAGCAGUGAGAU,AE007476.1/6452-6548 AE008531.1/9576-9672,9576-9672,0,96,AE008531.1/9576-9672 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24747,AE010036.1,1,sp|AE010036.1|AE010036 Streptococcus pyogenes strain MGAS8232; section 84 of 173 of the complete genome.,0,20,1276,1370,63.78,UGAAUUCAAUAAUGACAUACUUAUUUAUGCUGUGAAUUGGCGCAGCGUCUCUACAAGACACCUUAAUGUCUAACAAUAAGUAAGCUUUUAGGCUU,AE014152.1/30424-30518 AE006556.1/1276-1370 AE010036.1/1276-1370 AP005144.1/43827-43921,1276-1370,0,94,AE010036.1/1276-1370 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25314,AE010606.1,1,sp|AE010606.1|AE010606 Fusobacterium nucleatum subsp. nucleatum ATCC 25586; section 148 of 197 of the complete genome.,1,21,4680,4581,65.46,UAAAUAAUUUUAAUAAAAAUUCGUAUAAGCCUAAUAUAUGGAAGGGUGUCCCUACGGUUAACCAUAAAUUAACCAGCUACGAAAAAUGUUUUACUGUGUU,AE010606.1/4680-4581,4680-4581,0,99,AE010606.1/4680-4581 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,27516,AE013027.1,1,sp|AE013027.1|AE013027 Thermoanaerobacter tengcongensis strain MB4T; section 54 of 244 of the complete genome.,0,22,8237,8336,96.76,AAAAAUUUAAUAAGAAGCACUCAUAUAAUCCCGAGAAUAUGGCUCGGGAGUCUCUACCGAACAACCGUAAAUUGUUCGACUAUGAGUGAAAGUGUACCUA,AE013027.1/8237-8336,8237-8336,0,99,AE013027.1/8237-8336 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,28576,AE014152.1,1,sp|AE014152.1|AE014152 Streptococcus pyogenes MGAS315; section 17 of 37 of the complete genome.,0,23,30424,30518,63.78,UGAAUUCAAUAAUGACAUACUUAUUUAUGCUGUGAAUUGGCGCAGCGUCUCUACAAGACACCUUAAUGUCUAACAAUAAGUAAGCUUUUAGGCUU,AE014152.1/30424-30518 AE006556.1/1276-1370 AE010036.1/1276-1370 AP005144.1/43827-43921,30424-30518,0,94,AE014152.1/30424-30518 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,28647,AE014241.1,1,sp|AE014241.1|AE014241 Streptococcus agalactiae 2603V/R section 51 of 100 of the complete genome.,1,24,16113,16017,68.13,CAAUUAAAUAUAUGAUUUACUUAUUUAUGCUGAGGAUUGGCUUAGCGUCUCUACAAGACACCGUAAUGUCUAACAAUAAGUAAGCUAAUAAAUAGCU,AL766848.1/211490-211394 AE014241.1/16113-16017,16113-16017,0,96,AE014241.1/16113-16017 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30281,AE015944.1,1,sp|AE015944.1|AE015944 Clostridium tetani E88; section 9 of 10 of the complete genome.,1,25,141656,141558,71.34,CUCUAUAAUAAAUUAUUGACUCAUAUAUCCCCUUAAUAAGGUAGGGAGUAUCUACCAGAAGCCUUAAACUUCUGACUAUGAGUGAAUAAAGCAUUGUCA,AE015944.1/141656-141558,141656-141558,0,98,AE015944.1/141656-141558 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30291,AE016752.1,1,sp|AE016752.1|AE016752 Staphylococcus epidermidis ATCC 12228; section 9 of 9 of the complete genome.,1,26,24570,24467,76.84,CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU,**** NEW HIT #13 ****,24569-24470,1,100,AE016752.1/24570-24467 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30343,AE016809.1,1,sp|AE016809.1|AE016809 Vibrio vulnificus CMCP6 chromosome II section 2 of 6 of the complete sequence.,0,27,202495,202592,66.06,GACUUUCGGCGAUCAACGCUUCAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUGAAGUCUGUCGCUUUAU,AE016809.1/202495-202592,202495-202592,0,97,AE016809.1/202495-202592 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30423,AE016954.1,1,sp|AE016954.1|AE016954 Enterococcus faecalis V583; section 8 of 11 of the complete genome.,1,28,153893,153795,51.93,UCCUAGAGAAACAUAGAAGCUUGUAUAAGGUCAAAAUACGGUUGACCGUCUCUACCCAGCACCGUAAAUGCUGGUCUAUAAGUGAAGAAGAGCGGAUAG,AE016954.1/153893-153795,153893-153795,0,98,AE016954.1/153893-153795 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30458,AE016998.1,1,sp|AE016998.1|AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome.,0,29,259601,259703,82.95,AGAUAAUAUAAAACGAUCCUUCAUAUAUCCUCAAUGAUAUGGUUUGAGAGUCUCUACCGGGUUACCGUAAACAACCUGACUAUGAAGGCAGUGUGUCUUAUAU,AE016998.1/259601-259703,261558-261660 298774-298876 259601-259703,0,102,AE016998.1/259601-259703 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30458,AE016998.1,1,sp|AE016998.1|AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome.,0,30,261558,261660,79.40,GAAAAGUGAAUAUUAUGCCGUCGUAUAAUAUCGGGGAUAUGGCCCGAAAGUUUCUACCUAGCUACCGUAAAUGGCUUGACUACGAGGCGUUUUUAUAAAGGUG,AE016998.1/261558-261660 AE017024.1/262601-262703,261558-261660 298774-298876 259601-259703,0,102,AE016998.1/261558-261660 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30458,AE016998.1,1,sp|AE016998.1|AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome.,0,31,298774,298876,72.92,AGAAACAAUAAUAUAAGACCUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUCUCUACCUAACGACCGUUAUUCGUUAGACUAUGAGGGAAAGUCACUCGGUAU,AE016998.1/298774-298876,261558-261660 298774-298876 259601-259703,0,102,AE016998.1/298774-298876 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30459,AE016999.1,1,sp|AE016999.1|AE016999 Bacillus cereus ATCC 14579 section 2 of 18 of the complete genome.,1,32,36564,36462,71.19,UUAAUACGGACGAUGUUACCUCAUAUAUACUUGAUAAUAUGGAUCGAGAGUUUCUACCCGGCAACCUUAAAUUGCUGGACUAUGGGGAAAACUAAUGAAUAUU,AE016999.1/36564-36462,36564-36462,0,102,AE016999.1/36564-36462 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30462,AE017002.1,1,sp|AE017002.1|AE017002 Bacillus cereus ATCC 14579 section 5 of 18 of the complete genome.,0,33,301083,301185,84.56,AAAUAAAUAGUUAGCUACACUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGAAGUACCGUAAAUACUUUGACUAUGAGUGAGGACGAAUAUAAUU,AE017002.1/301083-301185,301083-301185,0,102,AE017002.1/301083-301185 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30470,AE017010.1,1,sp|AE017010.1|AE017010 Bacillus cereus ATCC 14579 section 13 of 18 of the complete genome.,1,34,138243,138141,69.04,CUUCGAAAAGAAUCACUGCCUCAUAUAAUCUUGGAGAUAAGGUCCAUAAGUUUCUACCUGGCAACCAUGAAUUGCUAGACUAUGAGGGGAAAAGUGUGUAACA,AE017010.1/138243-138141 AE017036.1/96483-96381,138243-138141,0,102,AE017010.1/138243-138141 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30476,AE017024.1,1,sp|AE017024.1|AE017024 Bacillus anthracis str. Ames section 1 of 18 of the complete genome.,0,35,260641,260743,78.67,AGAUAAUAUAAAACGAUCCUUCAUAUAUCCUCAAAGAUAAGGUUUGAGAGUCUCUACCGGGUUACCGUAAACAACCUGACUAUGAAGGCAGUGUGUCUUAUAU,AE017024.1/260641-260743,260641-260743 262601-262703,0,102,AE017024.1/260641-260743 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30476,AE017024.1,1,sp|AE017024.1|AE017024 Bacillus anthracis str. Ames section 1 of 18 of the complete genome.,0,36,262601,262703,79.40,GAAAAGUGAAUAUUAUGCCGUCGUAUAAUAUCGGGGAUAUGGCCCGAAAGUUUCUACCUAGCUACCGUAAAUGGCUUGACUACGAGGCGUUUUUAUAAAGGUG,AE016998.1/261558-261660 AE017024.1/262601-262703,260641-260743 262601-262703,0,102,AE017024.1/262601-262703 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30477,AE017025.1,1,sp|AE017025.1|AE017025 Bacillus anthracis str. Ames section 2 of 18 of the complete genome.,0,37,5362,5464,75.34,AAAGAAUAAUAUAUAAGACCUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUCUCUACCUAACGACCGUUAUUCGUUAGACUAUGAGGGAAAGUCACUCGGUAU,AE017025.1/5362-5464,52387-52285 5362-5464,0,102,AE017025.1/5362-5464 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30477,AE017025.1,1,sp|AE017025.1|AE017025 Bacillus anthracis str. Ames section 2 of 18 of the complete genome.,1,38,52387,52285,74.52,UUAAUACGGACGAUGUUACCUCAUAUAUACUCGAUAAUAUGGAUCGAGAGUUUCUACCCGGCAACCUUAAAUUGCUGGACUAUGGGGAAAACUAAUGAAUAUU,AE017025.1/52387-52285,52387-52285 5362-5464,0,102,AE017025.1/52387-52285 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30481,AE017029.1,1,sp|AE017029.1|AE017029 Bacillus anthracis str. Ames section 6 of 18 of the complete genome.,0,39,46768,46870,85.41,AAAUAAAUAGUUAGCUACACUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGAAGUACCGUAAAUACUUUGACUAUGAGUGAGGACGAAUAUAUUU,AE017029.1/46768-46870,46768-46870,0,102,AE017029.1/46768-46870 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30488,AE017036.1,1,sp|AE017036.1|AE017036 Bacillus anthracis str. Ames section 13 of 18 of the complete genome.,1,40,96483,96381,69.04,CUUCGAAAAGAAUCACUGCCUCAUAUAAUCUUGGAGAUAAGGUCCAUAAGUUUCUACCUGGCAACCAUGAAUUGCUAGACUAUGAGGGGAAAAGUGUGUAACA,AE017010.1/138243-138141 AE017036.1/96483-96381,96483-96381,0,102,AE017036.1/96483-96381 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,10027,AF269738.1,1,sp|AF269738.1|AF269738 Staphylococcus epidermidis strain SR1 clone step.1020h07 genomic sequence.,0,41,1414,1517,76.84,CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU,**** NEW HIT (duplicate of new hit #13) ****,1415-1514,1,102,AF269738.1/1414-1517 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,10114,AF269825.1,1,sp|AF269825.1|AF269825 Staphylococcus epidermidis strain SR1 clone step.1024f07 genomic sequence.,1,42,751,648,76.84,CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU,**** NEW HIT (duplicate of new hit #13) ****,750-651,1,100,AF269825.1/751-648 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,10376,AF270087.1,1,sp|AF270087.1|AF270087 Staphylococcus epidermidis strain SR1 clone step.1048a12 genomic sequence.,0,43,2577,2680,76.84,CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU,**** NEW HIT (duplicate of new hit #13) ****,2578-2677,1,102,AF270087.1/2577-2680 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,18307,AF327738.1,1,sp|AF327738.1|AF327738 Streptococcus thermophilus strain CNRZ1205 Hpk1 (hpk1); response regulator Rr1 (rr1); and xanthine phosphoribosyltransferase (xpt) genes; complete cds; xanthine permease (xp) gene; partial cds; and unknown gene.,0,44,2512,2607,29.04,CAAACAAUGAGAACAUUACUUAUUUAUGUCACGAAUGGGCGUGACUUUCCUAUCAAGGUGCCGUACCACCUAACAAUAAUUAACCUAUWUUAUUCA,AF327738.1/2512-2607,2512-2607,0,95,AF327738.1/2512-2607 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,409,AL591975.1,1,sp|AL591975.1|AL591975 Listeria monocytogenes strain EGD; complete genome; segment 3/12,1,45,251119,251017,78.43,AAUCCGCUACAAUAAUAUAGUCGUAUAAGUUCGGUAAUAUGGACCGUUCGUUUCUACCAGGCAACCGUAAAAUGCCAGGCUACGAGCUAUUGUAAAAUUUAAU,**** NEW HIT #17 ****,251119-251020,1,99,AL591975.1/251119-251017 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,415,AL591981.1,1,sp|AL591981.1|AL591981 Listeria monocytogenes strain EGD; complete genome; segment 9/12,1,46,205922,205821,78.36,AUAACUUAAAACCGAAAUACUUGUAUAAUAGUUGCGAUUGGGCGACGAGUUUCUACCUGGUUACCGUAAAUAACCGGACUAUGAGUAGUUUGUAUAAAGAAG,**** NEW HIT #18 ****,205922-205824,1,98,AL591981.1/205922-205821 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,421,AL596165.1,1,sp|AL596165.1|AL596165 Listeria innocua Clip11262 complete genome; segment 3/12,1,47,154156,154054,79.45,AAUCGUCUACAAUAAUAAAGUCGUAUAAGUUCGGUAAUAUGGACCGUUCGUUUCUACCAGGCAACCGUAAAAUGCCAGGCUACGAGCUAUUGUAAAAUUUAAU,**** NEW HIT #19 ****,154156-154057,1,99,AL596165.1/154156-154054 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,426,AL596170.1,1,sp|AL596170.1|AL596170 Listeria innocua Clip11262 complete genome; segment 8/12,1,48,223345,223244,79.58,AUAACUUAAAACCGAAAUACUUAUAUAAUAGUUGCGAUUGGGCGACGAGUUUCUACCUGGUUACCGUAAAUAACCGGACUAUGAGUAGUUUGUAUAAAGAAG,**** NEW HIT #20 ****,223345-223247,1,98,AL596170.1/223345-223244 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,489,AL935260.1,1,sp|AL935260.1|AL935260 Lactobacillus plantarum strain WCFS1 complete genome; segment 9/11,0,49,2478,2574,49.88,UUCAAAUAAGUGGUAAUUGCCUAUAUAAUGUCAUGAUAUGGUUGACGAGUUUCUACCCAACCCCGUAAAGGUUGGACUAUAAGCAAACGAGGUCAUC,**** NEW HIT #21 ****,,2,0,AL935260.1/2478-2574 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,490,AL935261.1,1,sp|AL935261.1|AL935261 Lactobacillus plantarum strain WCFS1 complete genome; segment 10/11,1,50,262830,262734,60.28,UUAUCAAUACAACUAAUUGCCUAUAUAAUGCCAUGAUAUGGAUGGCGAGUUUCUACCCAGUGCCGUAAACACUGGACUAUAAGCGAAUUGAGUCGAC,**** NEW HIT #22 ****,,2,0,AL935261.1/262830-262734 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,928,AP001509.1,1,sp|AP001509.1|AP001509 Bacillus halodurans genomic DNA; section 3/14.,0,51,51442,51544,72.87,ACAUGUAGAUAUCAUCCCUUUCGUAUAUACUUGGAGAUAAGGUCCAGGAGUUUCUACCAGAUCACCGUAAAUGAUCUGACUAUGAAGGUGGAAUGGCUCGAUA,**** NEW HIT #23 ****,79475-79574 53309-53408 209873-209971 51442-51541,1,102,AP001509.1/51442-51544 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,928,AP001509.1,1,sp|AP001509.1|AP001509 Bacillus halodurans genomic DNA; section 3/14.,0,52,53309,53411,87.28,AAUAAAUCGAAAACAUCAUUUCGUAUAAUGGCAGGAAUAGGGCCUGCGAGUUUCUACCAAGCUACCGUAAAUAGCUUGACUACGAAAAUAAUGGGUUUUUUAC,**** NEW HIT #24 ****,79475-79574 53309-53408 209873-209971 51442-51541,1,102,AP001509.1/53309-53411 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,928,AP001509.1,1,sp|AP001509.1|AP001509 Bacillus halodurans genomic DNA; section 3/14.,0,53,79475,79577,89.28,CGUUCUUUAUAUAAAGUACCUCAUAUAAUCUUGGGAAUAUGGCCCAAAAGUUUCUACCUGCUGACCGUAAAUCGGCGGACUAUGGGGAAAGAUUUUGGAUCUU,**** NEW HIT #25 ****,79475-79574 53309-53408 209873-209971 51442-51541,1,102,AP001509.1/79475-79577 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,928,AP001509.1,1,sp|AP001509.1|AP001509 Bacillus halodurans genomic DNA; section 3/14.,0,54,209873,209971,60.60,UUAAUCGAGCUCAACACUCUUCGUAUAUCCUCUCAAUAUGGGAUGAGGGUCUCUACAGGUACCGUAAAUACCUAGCUACGAAAAGAAUGCAGUUAAUGU,AP001509.1/209873-209971,79475-79574 53309-53408 209873-209971 51442-51541,0,98,AP001509.1/209873-209971 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,931,AP001512.1,1,sp|AP001512.1|AP001512 Bacillus halodurans genomic DNA; section 6/14.,1,55,93774,93672,90.86,AUUUACAUUAAAAAAAGCACUCGUAUAAUCGCGGGAAUAGGGCCCGCAAGUUUCUACCAGGCUGCCGUAAACAGCCUGACUACGAGUGAUACUUUGACAUAGA,**** NEW HIT #26 ****,93774-93675,1,99,AP001512.1/93774-93672 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,992,AP003130.2,1,sp|AP003130.2|AP003130 Staphylococcus aureus subsp. aureus N315 genomic DNA; complete genome; section 2/10.,0,56,132797,132900,73.10,GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG,**** NEW HIT (duplicate of new hit #11) ****,132798-132897,1,102,AP003130.2/132797-132900 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1003,AP003186.2,1,sp|AP003186.2|AP003186 Clostridium perfringens str. 13 DNA; complete genome; section 2/10.,0,57,121422,121522,76.94,UGUACUUAUAUAAGUAUAUCGUAUAUGCUCGACGAUAUGGGUUGAGUGUUUCUACUAGGAGGCCGUAAACAUCCUAACUACGAAUAUAUAGGUGAUUUCUA,**** NEW HIT #28 ****,211688-211589 121422-121519,1,100,AP003186.2/121422-121522 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1003,AP003186.2,1,sp|AP003186.2|AP003186 Clostridium perfringens str. 13 DNA; complete genome; section 2/10.,1,58,211688,211586,90.03,UAAGUGUAUUAAAUUUUAACUCGUAUAUAAUCGGUAAUAUGGUCCGAAAGUUUCUACCUGCUAACCGUAAAAUAGCAGACUACGAGGAGUUGUACUAUAAAUU,**** NEW HIT #29 ****,211688-211589 121422-121519,1,99,AP003186.2/211688-211586 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1010,AP003193.2,1,sp|AP003193.2|AP003193 Clostridium perfringens str. 13 DNA; complete genome; section 9/10.,1,59,214121,214023,78.90,AAAACGGAAUAUAAACAAACUCGUAUAAGCUUUGAAUAAGGCAAGGCGUUUCUACCGGAAACCUUAAAUUUCCGUCUAUGAGUGAAUUUGAUAUACUAU,AP003193.2/214121-214023,214121-214023,0,98,AP003193.2/214121-214023 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1011,AP003194.2,1,sp|AP003194.2|AP003194 Clostridium perfringens str. 13 DNA; complete genome; section 10/10.,1,60,163701,163601,79.48,AUAAAAAAAUAAAUUUUGCUUCGUAUAACUCUAAUGAUAUGGAUUAGAGGUCUCUACCAAGAACCGAGAAUUCUUGAUUACGAAGAAAGCUUAUUUGCUUU,**** NEW HIT #30 ****,163701-163603,1,98,AP003194.2/163701-163601 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1013,AP003359.2,1,sp|AP003359.2|AP003359 Staphylococcus aureus subsp. aureus Mu50 genomic DNA; complete sequence; section 2/9.,0,61,80810,80913,73.10,GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG,**** NEW HIT (duplicate of new hit #11) ****,80811-80910,1,102,AP003359.2/80810-80913 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1057,AP004595.1,1,sp|AP004595.1|AP004595 Oceanobacillus iheyensis HTE831 genomic DNA; section 3/13.,0,62,160373,160472,76.92,CAAUUUUUAUCCAAUGCCUUUCGUAUAUCCUCGAUAAUAUGGUUCGAAAGUAUCUACCGGGUCACCGUAAAUGAUCUGACUAUGAAGGCAGAAGCAGGUU,AP004595.1/160373-160472,160373-160472 169586-169684 186670-186768,0,99,AP004595.1/160373-160472 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1057,AP004595.1,1,sp|AP004595.1|AP004595 Oceanobacillus iheyensis HTE831 genomic DNA; section 3/13.,0,63,169586,169687,74.12,UGAUGUAAUUGAAUAGAAAUGCGUAUAAUUAAGGGGAUAUGGCCCACAGUUUCUACCAGACCACCGUAAAUGGUUUGACUACGCAGUAAUUAUAUUUGUAUC,**** NEW HIT #32 ****,160373-160472 169586-169684 186670-186768,1,101,AP004595.1/169586-169687 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1057,AP004595.1,1,sp|AP004595.1|AP004595 Oceanobacillus iheyensis HTE831 genomic DNA; section 3/13.,0,64,186670,186768,75.87,ACAAUUGAAAAUGAACCUCAUAUAAAUUUGAGAAUAUGGCUCAGAAGUUUCUACCCAGCACCGUAAAUGGCUGGACUAUGAGGGAAGAUGGAUCAUUUC,AP004595.1/186670-186768,160373-160472 169586-169684 186670-186768,0,98,AP004595.1/186670-186768 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1058,AP004596.1,1,sp|AP004596.1|AP004596 Oceanobacillus iheyensis HTE831 genomic DNA; section 4/13.,0,65,203843,203945,84.95,AAACCUUAUAUAUAGUUUUUUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGGUUUACCGUAAAUGAACCGACUAUGGAAAAGCGGAAAAUUCGAU,**** NEW HIT #33 ****,203843-203942,1,102,AP004596.1/203843-203945 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1069,AP004823.1,1,sp|AP004823.1|AP004823 Staphylococcus aureus subsp. aureus MW2 DNA; complete genome; strain:MW2; section 2/10.,0,66,120346,120449,73.10,GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG,**** NEW HIT (duplicate of new hit #11) ****,120347-120446,1,102,AP004823.1/120346-120449 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1124,AP005088.1,1,sp|AP005088.1|AP005088 Vibrio parahaemolyticus DNA; chromosome 2; complete sequence; 5/6.,0,67,167671,167771,60.05,UAUAAUCGCAAGCGUUUGCUUCGUAUAACCCCAAUGAUAUGGUUUGGGGGUCUCUACCAGUUCCCGCAAAGUGCUGAUUACGAAGAGUUGAGAUCACUGUG,AP005088.1/167671-167771,167671-167771,0,100,AP005088.1/167671-167771 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1129,AP005144.1,1,sp|AP005144.1|AP005144 Streptococcus pyogenes SSI-1 DNA; complete genome; section 4/6.,0,68,43827,43921,63.78,UGAAUUCAAUAAUGACAUACUUAUUUAUGCUGUGAAUUGGCGCAGCGUCUCUACAAGACACCUUAAUGUCUAACAAUAAGUAAGCUUUUAGGCUU,AE014152.1/30424-30518 AE006556.1/1276-1370 AE010036.1/1276-1370 AP005144.1/43827-43921,43827-43921,0,94,AP005144.1/43827-43921 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,14913,AY136815.1,1,sp|AY136815.1|AY136815 Spiroplasma citri SC76 gene; complete cds.,0,69,661,761,43.12,UAUAAAAAUAAAUUAUAUAUCUGUAUAUACUAGUAAUAUGGUCUAGUGUUUCUACGUCUUACCAUUGGAAGAAGACGCUAUAGGUUAAUGCUUUUGCUUUU,**** NEW HIT #35 ****,,2,0,AY136815.1/661-761 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,40073,D83026.1,1,sp|D83026.1|BSD026 Bacillus subtilis genome sequence covering lic-cel region.,1,70,18553,18451,88.63,CAUCUUAGAAAAAGACAUUCUUGUAUAUGAUCAGUAAUAUGGUCUGAUUGUUUCUACCUAGUAACCGUAAAAAACUAGACUACAAGAAAGUUUGAAUAAAUUU,Z99123.2/194901-195003,18553-18454,0,99,D83026.1/18553-18451 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,40106,D88802.1,1,sp|D88802.1|BSD802 Bacillus subtilis DNA for phoB-rrnE-groESL region; complete cds.,1,71,12464,12364,74.95,AAUUAAAUAGCUAUUAUCACUUGUAUAACCUCAAUAAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGAUUACAAAAUUUGUUUAUGACAUUU,Z99107.2/14363-14263,12464-12366,0,98,D88802.1/12464-12364 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,41327,J02732.1,1,sp|J02732.1|BSPURF01 B.subtilis pur operon encoding purine biosynthesis enzymes; 12 genes.,0,72,196,298,81.00,CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCGGCAACCGUAAAUUGCCGGACUAUGCAGGAAAGUGAUCGAUAAA,Z99107.2/86081-86183,196-295,0,102,J02732.1/196-298 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42301,U51115.1,1,sp|U51115.1|BSU51115 Bacillus subtilis CotA (cotA); GabP (gabP); YeaB (yeaB); YeaC (yeaC); YebA (yebA); GMP synthetase (guaA) genes; complete cds; and AIR carboxylase I (purE) gene; partial cds.,0,73,11655,11757,86.19,AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAAGCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUUG,Z99107.2/82145-82247,11655-11754 15589-15688,0,102,U51115.1/11655-11757 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42301,U51115.1,1,sp|U51115.1|BSU51115 Bacillus subtilis CotA (cotA); GabP (gabP); YeaB (yeaB); YeaC (yeaC); YebA (yebA); GMP synthetase (guaA) genes; complete cds; and AIR carboxylase I (purE) gene; partial cds.,0,74,15589,15691,79.30,CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCGGCAACCGUAAAUUGCCGGACUAUGCAGGGAAGUGAUCGAUAAA,**** NEW HIT #36 ****,11655-11754 15589-15688,1,102,U51115.1/15589-15691 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42384,Z99107.2,1,sp|Z99107.2|BSUB0004 Bacillus subtilis complete genome (section 4 of 21): from 611631 to 813719.,0,75,82145,82247,86.19,AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAAGCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUUG,Z99107.2/82145-82247,86081-86183 82145-82247 14363-14263,0,102,Z99107.2/82145-82247 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42384,Z99107.2,1,sp|Z99107.2|BSUB0004 Bacillus subtilis complete genome (section 4 of 21): from 611631 to 813719.,0,76,86081,86183,81.00,CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCGGCAACCGUAAAUUGCCGGACUAUGCAGGAAAGUGAUCGAUAAA,Z99107.2/86081-86183,86081-86183 82145-82247 14363-14263,0,102,Z99107.2/86081-86183 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42384,Z99107.2,1,sp|Z99107.2|BSUB0004 Bacillus subtilis complete genome (section 4 of 21): from 611631 to 813719.,1,77,14363,14263,74.95,AAUUAAAUAGCUAUUAUCACUUGUAUAACCUCAAUAAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGAUUACAAAAUUUGUUUAUGACAUUU,Z99107.2/14363-14263,86081-86183 82145-82247 14363-14263,0,100,Z99107.2/14363-14263 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42392,Z99115.2,1,sp|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to 2409180.,1,78,111605,111505,82.72,UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGGUGAGCAAUGGAACCGCA,Z99115.2/111605-111505,111605-111505,0,100,Z99115.2/111605-111505 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42400,Z99123.2,1,sp|Z99123.2|BSUB0020 Bacillus subtilis complete genome (section 20 of 21): from 3809641 to 4010779.,0,79,194901,195003,88.63,CAUCUUAGAAAAAGACAUUCUUGUAUAUGAUCAGUAAUAUGGUCUGAUUGUUUCUACCUAGUAACCGUAAAAAACUAGACUACAAGAAAGUUUGAAUAAAUUU,Z99123.2/194901-195003,194901-195003,0,102,Z99123.2/194901-195003 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42420,X83878.1,1,sp|X83878.1|BSXPTPBUX B.subtilis xpt and pbuX genes,0,80,168,268,82.72,UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGGUGAGCAAUGGAACCGCA,Z99115.2/111605-111505,168-265,0,100,X83878.1/168-268 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42494,L77246.1,1,sp|L77246.1|BSYACA Bacillus subtilis (YAC10-9 clone) DNA region between the serA and kdg loci.,0,81,1237,1337,82.72,UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGGUGAGCAAUGGAACCGCA,Z99115.2/111605-111505,1237-1334,0,100,L77246.1/1237-1337 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,26976,AL766848.1,1,sp|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome; segment 6,1,82,211490,211394,68.13,CAAUUAAAUAUAUGAUUUACUUAUUUAUGCUGAGGAUUGGCUUAGCGUCUCUACAAGACACCGUAAUGUCUAACAAUAAGUAAGCUAAUAAAUAGCU,AL766848.1/211490-211394 AE014241.1/16113-16017,211490-211394,0,96,AL766848.1/211490-211394 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,24292,AL929229.6,1,sp|AL929229.6|AL929229 Zebrafish DNA sequence from clone CH211-1E14 in linkage group 18,0,83,58723,58821,25.18,AAAAAUCAUAUAAUUUAUUUUUAUAUAUAUUAUAUAAUAUUAUUUAUUUCUACUACUUACCUUUAAAUGAAUAAAUUAAACAUAGUAAUAAAUAAUAUA,**** NEW HIT #37 ****,,2,0,AL929229.6/58723-58821 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2308,AC008649.8,1,sp|AC008649.8|AC008649 Homo sapiens chromosome 19 clone CTB-186G2; complete sequence.,1,84,89622,89527,25.33,AAAUAUAUAUAUAUAAAAAUAUAUAUAAAUAUAUAAAUAUAUAUAAGUAUAUAUAAAUAUAUAAAUAUAUAAAUAUAUAUAAUAUAUAUAAAUAUA,**** NEW HIT #38 ****,,2,0,AC008649.8/89622-89527 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3179,AC010284.4,1,sp|AC010284.4|AC010284 Homo sapiens chromosome 5 clone CTC-558E23; complete sequence.,0,85,10582,10678,27.20,AAAUAUAAAAAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAUAUAAAUCUAUACAAAUAUAUAAAUAUAUAUAAUAUAUAAAUAUAUAAAUAUAUAU,**** NEW HIT #39 ****,,2,0,AC010284.4/10582-10678 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3485,AC010792.4,1,sp|AC010792.4|AC010792 Homo sapiens chromosome 17; clone -2524N8; complete sequence.,1,86,13113,13012,25.20,UAUAUAUUAUAAUAUAUAAUAUAUAUAAUAUAUAUAAUAUAUUAGAUAUAUAAUAUAUACAAUAUAUUAUAUAUAUAAAUAUAUAUAAUAUAUAACAUAUAU,**** NEW HIT #40 ****,,2,0,AC010792.4/13113-13012 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5723,AC022144.8,1,sp|AC022144.8|AC022144 Homo sapiens chromosome 19 clone CTD-2540F13; complete sequence.,0,87,131510,131605,25.33,AAAUAUAUAUAUAUAAAAAUAUAUAUAAAUAUAUAAAUAUAUAUAAGUAUAUAUAAAUAUAUAAAUAUAUAAAUAUAUAUAAUAUAUAUAAAUAUA,**** NEW HIT (duplicate of new hit #38) ****,,2,0,AC022144.8/131510-131605 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8613,AC078833.5,1,sp|AC078833.5|AC078833 Homo sapiens chromosome 7 clone RP11-266A11; complete sequence.,1,88,19225,19127,26.39,UAUAAUAUUAUAUAAUAUUAUUAUAUAAUAAUAUUAUAUAUGGUAUAUAUUAUACCUUAAACCUUAUAUAUAAUAUUAUUAUAUAAUAUUAUUAUAUAA,**** NEW HIT #42 ****,,2,0,AC078833.5/19225-19127 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,180,AC091628.2,1,sp|AC091628.2|AC091628 Homo sapiens chromosome 17 map 17q21.1; complete sequence.,1,89,17585,17484,25.20,UAUAUAUUAUAAUAUAUAAUAUAUAUAAUAUAUAUAAUAUAUUAGAUAUAUAAUAUAUACAAUAUAUUAUAUAUAUAAAUAUAUAUAAUAUAUAACAUAUAU,**** NEW HIT (duplicate of new hit #40) ****,,2,0,AC091628.2/17585-17484 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,315,AC091925.3,1,sp|AC091925.3|AC091925 Homo sapiens chromosome 5 clone RP11-278J6; complete sequence.,0,90,162685,162781,27.20,AAAUAUAAAAAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAUAUAAAUCUAUACAAAUAUAUAAAUAUAUAUAAUAUAUAAAUAUAUAAAUAUAUAU,**** NEW HIT (duplicate of new hit #39) ****,,2,0,AC091925.3/162685-162781 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1080,AC093112.4,1,sp|AC093112.4|AC093112 Homo sapiens BAC clone RP11-621K10 from 2; complete sequence.,1,91,33032,32930,25.37,UAUAUAAAUAUAUUAUAUAUUUAUAUAUAAAUAUAUAAUAUGAAUAUAUAUAUUAUAUAUAAAUAUAUUAUAUAUUUAUAUAUAAAUAUAUUAUAUAUUUAUA,**** NEW HIT #45 ****,,2,0,AC093112.4/33032-32930 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1537,AC093840.4,1,sp|AC093840.4|AC093840 Homo sapiens BAC clone RP11-433O3 from 4; complete sequence.,0,92,67964,68064,28.12,AUAUAUUAUAUAUAUAAUAUAUAUAUAAUAUAUGUAAUAUGCAAUAUAUAUUUUAUUAUAUAAUAAUAAAUUAUAUAUUAUAUAUAAAUAAUAUAUAAUAU,**** NEW HIT #46 ****,,2,0,AC093840.4/67964-68064 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4096,AC109360.3,1,sp|AC109360.3|AC109360 Homo sapiens BAC clone RP11-685O6 from 4; complete sequence.,0,93,12947,13050,25.15,UUAUAUAUAUUUUUAUUUCUAGAUAUAUAUUAUAUAAUAUGAUAUAUAAAUAUAUACAAUAUACAUUUAUAAAUAUAUAAAUAUAUAUAAAUAUAUACUAUAUA,**** NEW HIT #47 ****,,2,0,AC109360.3/12947-13050 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6566,AC136488.3,1,sp|AC136488.3|AC136488 Homo sapiens chromosome X clone RP13-886N14; complete sequence.,1,94,141163,141064,25.99,AUAUAUUAAUAAAUAUAUAAAUAUAUAUAUUAAUAAAUAUAUAUAUAAAUAUGUACAUAUAUGUAAAUAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAU,**** NEW HIT #48 ****,,2,0,AC136488.3/141163-141064 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6567,AC136489.3,1,sp|AC136489.3|AC136489 Homo sapiens chromosome X clone RP13-749I18 map Xp11.3 complete sequence.,1,95,42575,42476,25.99,AUAUAUUAAUAAAUAUAUAAAUAUAUAUAUUAAUAAAUAUAUAUAUAAAUAUGUACAUAUAUGUAAAUAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAU,**** NEW HIT (duplicate of new hit #48) ****,,2,0,AC136489.3/42575-42476 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,3311,AL391987.15,1,sp|AL391987.15|AL391987 Human DNA sequence from clone RP11-374M1 on chromosome 9,0,96,99210,99309,26.49,AUUAUGUUUUUAAUAUAUUUUAAUAUAAUUUGAAAAUAUUGUUUUAAAAUUACAUCUAUGUUCCAUAAAUAAAUAAAUAUGUAAAAAUAAUAAAUGUUUG,**** NEW HIT #50 ****,,2,0,AL391987.15/99210-99309 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,5372,AL627230.15,1,sp|AL627230.15|AL627230 Human DNA sequence from clone RP11-12A20 on chromosome 9,0,97,34680,34779,26.49,AUUAUGUUUUUAAUAUAUUUUAAUAUAAUUUGAAAAUAUUGUUUUAAAAUUACAUCUAUGUUCCAUAAAUAAAUAAAUAUGUAAAAAUAAUAAAUGUUUG,**** NEW HIT (duplicate of new hit #50) ****,,2,0,AL627230.15/34680-34779 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,6858,AP001138.3,1,sp|AP001138.3|AP001138 Homo sapiens genomic DNA; chromosome 21q21.1-q21.2; LL56-APP region; clone:B880L11; complete sequence.,1,98,146063,145961,26.57,UAUAUGUAAAAUAUUAUUACAUAUAUAUCUCUAUAUAUAGAUAUAUAUAUCUCUACAUAUACACGUAAAAUAUUAUAUAUUAUAUAUAACAUAUUAUAUAUUU,**** NEW HIT #52 ****,,2,0,AP001138.3/146063-145961 ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00167.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,7118,AP001680.1,1,sp|AP001680.1|AP001680 Homo sapiens genomic DNA; chromosome 21q; section 24/105.,1,99,280698,280596,26.57,UAUAUGUAAAAUAUUAUUACAUAUAUAUCUCUAUAUAUAGAUAUAUAUAUCUCUACAUAUACACGUAAAAUAUUAUAUAUUAUAUAUAACAUAUUAUAUAUUU,**** NEW HIT (duplicate of new hit #52) ****,,2,0,AP001680.1/280698-280596 THINGS IN Rfam THAT WEREN'T FOUND: AUAACUUAAAACCGAAAUACUUAUAUAAUAGUUGCGAUUGGGCGACGAGUUUCUACCUGGUUACCGUAAAUAACCGGACUAUGAGUAGUUUGUAUAAAG,AL596170.1/223345-223247, AAUCGUCUACAAUAAUAAAGUCGUAUAAGUUCGGUAAUAUGGACCGUUCGUUUCUACCAGGCAACCGUAAAAUGCCAGGCUACGAGCUAUUGUAAAAUUU,AL596165.1/154156-154057, CGUUCUUUAUAUAAAGUACCUCAUAUAAUCUUGGGAAUAUGGCCCAAAAGUUUCUACCUGCUGACCGUAAAUCGGCGGACUAUGGGGAAAGAUUUUGGAU,AP001509.1/79475-79574, AAAAGUAAUAACAUAUUACCCGUAUAUGCUUAGAAAUAUGGUCUAAGCGUCUCUACCGGACUGCCGUAAAUUGUCUGACUAUGGGUGUUUAUAAGUAUUU,AE007775.1/3557-3458, ACAUGUAGAUAUCAUCCCUUUCGUAUAUACUUGGAGAUAAGGUCCAGGAGUUUCUACCAGAUCACCGUAAAUGAUCUGACUAUGAAGGUGGAAUGGCUCG,AP001509.1/51442-51541,0 AAUCCGCUACAAUAAUAUAGUCGUAUAAGUUCGGUAAUAUGGACCGUUCGUUUCUACCAGGCAACCGUAAAAUGCCAGGCUACGAGCUAUUGUAAAAUUU,AL591975.1/251119-251020, AUAACUUAAAACCGAAAUACUUGUAUAAUAGUUGCGAUUGGGCGACGAGUUUCUACCUGGUUACCGUAAAUAACCGGACUAUGAGUAGUUUGUAUAAAG,AL591981.1/205922-205824, AAUUAAAUAGCUAUUAUCACUUGUAUAACCUCAAUAAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGAUUACAAAAUUUGUUUAUGACAU,D88802.1/12464-12366, AUAAAAAAAUAAAUUUUGCUUCGUAUAACUCUAAUGAUAUGGAUUAGAGGUCUCUACCAAGAACCGAGAAUUCUUGAUUACGAAGAAAGCUUAUUUGCU,AP003194.2/163701-163603, AUUUACAUUAAAAAAAGCACUCGUAUAAUCGCGGGAAUAGGGCCCGCAAGUUUCUACCAGGCUGCCGUAAACAGCCUGACUACGAGUGAUACUUUGACAU,AP001512.1/93774-93675, UGUACUUAUAUAAGUAUAUCGUAUAUGCUCGACGAUAUGGGUUGAGUGUUUCUACUAGGAGGCCGUAAACAUCCUAACUACGAAUAUAUAGGUGAUUU,AP003186.2/121422-121519,0 CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCGGCAACCGUAAAUUGCCGGACUAUGCAGGAAAGUGAUCGAU,J02732.1/196-295, UUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUAC,AC069311.6/6198-6297, UUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUAC,AP004823.1/120347-120446, UUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUAC,AP003359.2/80811-80910, UUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUAC,AP003130.2/132798-132897, CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCGGCAACCGUAAAUUGCCGGACUAUGCAGGGAAGUGAUCGAU,U51115.1/15589-15688,0 AAACCUUAUAUAUAGUUUUUUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGGUUUACCGUAAAUGAACCGACUAUGGAAAAGCGGAAAAUUC,AP004596.1/203843-203942, UAAGUGUAUUAAAUUUUAACUCGUAUAUAAUCGGUAAUAUGGUCCGAAAGUUUCUACCUGCUAACCGUAAAAUAGCAGACUACGAGGAGUUGUACUAUAA,AP003186.2/211688-211589, AUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUAC,AF269825.1/750-651, AUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUAC,AF270087.1/2578-2677, AUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUAC,AF269738.1/1415-1514, AUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUAC,AE016752.1/24569-24470, UGAUGUAAUUGAAUAGAAAUGCGUAUAAUUAAGGGGAUAUGGCCCACAGUUUCUACCAGACCACCGUAAAUGGUUUGACUACGCAGUAAUUAUAUUUGU,AP004595.1/169586-169684,0 AAUAAAUCGAAAACAUCAUUUCGUAUAAUGGCAGGAAUAGGGCCUGCGAGUUUCUACCAAGCUACCGUAAAUAGCUUGACUACGAAAAUAAUGGGUUUUU,AP001509.1/53309-53408,0 CAUCUUAGAAAAAGACAUUCUUGUAUAUGAUCAGUAAUAUGGUCUGAUUGUUUCUACCUAGUAACCGUAAAAAACUAGACUACAAGAAAGUUUGAAUAAA,D83026.1/18553-18454, UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGGUGAGCAAUGGAACC,L77246.1/1237-1334, UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGGUGAGCAAUGGAACC,X83878.1/168-265, AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAAGCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGU,U51115.1/11655-11754, # hits found that weren't in Rfam: 54 (totally new = 31, overlaps hit in Rfam = 23, overlap hits with more than 10 nucs = 23, total # hits with 0 overlap with Rfam (ignoring sequence matching) = 31) # Rfam hits not found: 29 (no overlap of >= 10 nucs: 29) # Rfam seqs not found: 22 (no overlap of >= 10 nucs: too tricky to calculate)