Params: ./cmzasha --no-stderr --filter 150 25 Rfam/cm/RF00167.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00167_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00167_fwdinf_hmmtype1_advance_copy.bin Build: release Host: tricycle.cs.washington.edu pid: 15495 ----hmm-from-cmFileName: Rfam/cm/RF00167.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-greedy-node 150 25.00 Rfam/cm/RF00167.cm forward-alg-inf 100000 cycling-node cfsqp-elim-gauss 0 1 Build: release Host: recycle.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-greedy-node 150 25.00 Rfam/cm/RF00167.cm forward-alg-inf 100000 cycling-node cfsqp-elim-gauss 0 1 Build: release Host: recycle.cs.washington.edu ----hmm-from-cmFileName: ../zasha-infernal/Rfam/cm/RF00167.cm ----hmm-build-info: ;(default construction of HMM) Params: --set-input-mm-file Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf ../zasha-infernal/Rfam/cm/RF00167.cm 1 1 100000 1 Build: release Host: SERENA ;Params: --set-input-mm-file Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf ../zasha-infernal/Rfam/cm/RF00167.cm 1 1 100000 1 Build: release Host: SERENA ----cmFile: Rfam/cm/RF00167.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7352,sp|AE001373.1|AE001373 Plasmodium falciparum 3D7 chromosome 2 section 10 of 73 of the complete sequence. ----isReversed: 0 ----hitSequence: AUGUAUUAUAUAUAAAAUAUAUAUAUAUAUAUAAUGAUAUAUUUUUAAAAAUUUAUAUUAUAUAACCAUAUAUUAUAUAUCAAUAAAAUAAUUAUAUAUAAAUA hit 0 : 973 1076 (fwd) 29.05 bits :::::::::::::::::((((((((,,,<<<<<<<_______...>>>>>>>,,,,,,,, 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG...cccgggaGUUUCUAC 57 A +AU+A+A+A+AAA+ +: :AU UA+:::::::+AUAU ::::::: UUU UA 973 AUGUAUUAUAUAUAAAAUAUAUAUAUAUAUAUAAUGAUAU--auuUUUAAAAAUUUAUAU 1030 <<<<<<<_______>>>>>>>,,))))))))::::::::::::::: 58 CaGgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :A:::AACC UA AUU:::U: C AU: :+ AAUU UAUAUA U 1031 UAUAUAACCAUAUAUUAUAUAUCAAUAAAAUAAUUAUAUAUAAAUA 1076 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7870,sp|AE014822.1|AE014822 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence. ----isReversed: 0 ----hitSequence: AAAUAAAAAUAAAAAUAUAUAUAUAUAUAUAUAUAAUAUGGAUAAUUUCACUCUUCAGUAGAAUCAUAUGUAUAUUUAUAUAUAUAUAUUAUAAAAUUA hit 1 : 188619 188717 (fwd) 25.64 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAA+A+AAA+AAAAA++:A: :AUAUA+ ::::+AAUAUGG+:::: + +UCU C::: 188619 AAAUAAAAAUAAAAAUAUAUAUAUAUAU-AUAUAUAAUAUGGAUAAUUUCACUCUUCAGU 188677 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 : A: C U :U :::: UAU: :U: AU+UUAUA A UU 188678 AGAAUCAU---AUGUAUAUUUAUAUAUAUAUAUUAUAAAAUUA 188717 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7871,sp|AE014823.1|AE014823 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. ----isReversed: 1 ----hitSequence: AUAAAUAUAUUUAUAUUUUUUUUUAUAUUAUUAUAAUAUGGUUAUAUUAUUUAUACACGUGCAAAGAUAAUUAAAAAGAGGUAUAUUUUAAUUU hit 2 : 163328 163235 (rev) 25.45 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A AAAUA+A+++A A+U:::U: UAUA+ :: :::AAUAUGG::: ::+ UUU UAC: 86616 AUAAAUAUAUUUAUAUUUUUUUUUAUAU-UAUUAUAAUAUGGUUAUAUUAUUUAUACAC- 86673 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :: C AAA :: :A UA :A::: U+U +U+UA UUU 86674 GUG-C---AAA-GAU--AAUUAAAAAGAGGUAUAUUUUAAUUU 86709 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7878,sp|AE014830.1|AE014830 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence. ----isReversed: 1 ----hitSequence: AUAAAUAAAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUUAUAUGUUUCUAAAAUACAUAUUAUAUAUAUAAUUAUAUUUAUAUAUAUUUUUUUUU hit 3 : 124794 124698 (rev) 28.50 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A AAAUAAA+A+A A++:A :AUAUA+ :::: AUAUG :::: +GUUUCUA :A: 125236 AUAAAUAAAUAUAUAUAUAUAUAUAUAU-A-UAUAUAUAUGUUAUA--UGUUUCUAAAAU 125291 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 : A UA A U ::U:A UAU: U: AU+U +U+U+UUUU 125292 ACA-UAUUAUA-UAUAUAAUUAUAUUUAUAUAUAUUUUUUUUU 125332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7881,sp|AE014833.1|AE014833 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence. ----isReversed: 0 ----hitSequence: UAAUAUAUAUAUAUAUAUACAUAUAUAAUAUAUAUAAUAUGUUUUUAUAUUAUAUACAUAUAUAAUAUAUAUAUGUUUAUAUUUAUAUAAUAUGUUUAUA hit 4 : 197627 197726 (fwd) 25.20 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +AA+AUA+A+A+A A++:A :AUAUAAU : ::AAUAUG :: : A U U UAC A: 197627 UAAUAUAUAUAUAUAUAUACAUAUAUAAUAUAUAUAAUAUGUUUUUAUAUUAUAUAC-AU 197685 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::A UA A U:::UG UAU: U: AU+ UAU U+U U 197686 AUA-UAAUAUA-UAUAUGUUUAUAUUUAUAUAAUAUGUUUAUA 197726 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7885,sp|AE014837.1|AE014837 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence. ----isReversed: 1 ----hitSequence: UUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUAUAUAUGGUACAGAAUAUUCUACAUUAUAUAAUAUAUAUAAUAUAUUUUUACAAAUAAGUUAUUAU hit 5 : 98647 98548 (rev) 25.19 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + A+AUA+A+A+A A++:A :AUAUA+:: :G:: AUAUGG::C: :: UUCUAC::: 159111 UUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUAUAUAUGGUACAGAAUAUUCUACAUU 159170 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::A UA A U:::::A UAU: U: A +U A +UAUU U 159171 AUA-UAAUAUA-UAUAAUA-UAUUUUUACAAAUAAGUUAUUAU 159210 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #16013,sp|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4 ----isReversed: 1 ----hitSequence: AAAAAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGCAUACAUGUUUGUACAUUUUGUAAAAUUAAUACAAUUUAUACAUUUUAUAUUUUUU hit 6 : 209327 209231 (rev) 27.35 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAAAAUA+A+A+A A++:A: :AU UA+ : ::: AUAUG ::: : GUUU UAC::: 137724 AAAAAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGC-AUACAUGUUUGUACAUU 137782 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 UAAA :::AC AU: :U: AUUUUAUAU+UUUU 137783 UUG----UAAA-AUUAAUACAAUUUAUACAUUUUAUAUUUUUU 137820 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6645,sp|AC124515.4|AC124515 Mus musculus chromosome 13 clone RP23-381E19, complete sequence. ----isReversed: 1 ----hitSequence: UUAUAGUAAUACAAUUUUUAUCAUAUAUUUUAUAUUAUAUUUAUACUCUGUUUAUAUAUUAUAACAGAAAUAUAAAAUACUAUGAUUAUAUUUUAUUUAAAUA hit 7 : 95722 95620 (rev) 27.21 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + A+A +AA+A AA++U: UCAUAUA+ :::::+ AUAU +::::: GUUU UA ::: 79633 UUAUAGUAAUACAAUUUUUAUCAUAUAUUUUAUAUUAUAUUUAUACUCUGUUUAUAUAUU 79692 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :A:C G AA :U: :::ACUAUGA : AUUUUAU+UA U 79693 AUAACAGAAAUAUAAAAUACUAUGAUUAUAUUUUAUUUAAAUA 79735 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7456,sp|AC132408.2|AC132408 Mus musculus chromosome 18 clone RP23-346A12, complete sequence. ----isReversed: 1 ----hitSequence: UAAAAAAAAAAAAAAAAGCUCUGUUUAAAAUUAGAUCAAAUGUUUUCAGGUUUUUACCAGCUUACAGUAAAUCAUGAAAACAAAGUAUCUUAAAUUUAAAU hit 8 : 147805 147705 (rev) 25.30 bits :::::::::::::::::((((((((,,,<.<<<<<<_______>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAu.cccgggAAUAUGGcccgggaGUUUCUACCa 59 +AAAA+AAAAAAAAAA+ :::::U+UAA ::::: A AUG ::::: GUUU UACCA 43809 UAAAAAAAAAAAAAAAAGCUCUGUUUAAAaUUAGAUCAAAUGUUUUCA-GGUUUUUACCA 43867 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G : AC GUAAAU : UGA +A::::: A+ UU A++U+ U 43868 GCUUACAGUAAAUCA--UGAAAACAAAGUAUCUUAAAUUUAAAU 43909 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #11802,sp|AB084760.1|AB084760 Drosophila simulans mitochondrial DNA, strain:SL61, central part of the A+T-rich region. ----isReversed: 1 ----hitSequence: UAAAUUAAAUAUAAUAUUAAUAAAUUAUUUUAAUAAUAGUUUUAUUUGUGUGUAUAAAUUAACCAAAAUAAUUAAUAAAAAUUAAAUAAAACAAAUUAU hit 9 : 592 494 (rev) 25.21 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +AAA+UAAA+A+AA+AU:A U: +UA+ ::::::AAU G ::::::+GU U UA :A: 58 UAAAUUAAAUAUAAUAUUAAUAAAUUAU-UUUAAUAAU-AGUUUUAUUUGUGUGUAUAAA 115 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::A:CC AAA:U:::U:A + :A U:AAU+ A A AUU U 116 UUAACC--AAAAUAAUUAAUAAAAAUUAAAUAAAACAAAUUAU 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #89102,sp|AF379861.1|AF379861 Leptomastix dactylopii 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product. ----isReversed: 1 ----hitSequence: AUUAUUUAAAUUAUUAAAAUUUAUAUAAAAUUCUAUAGGGUCUUCUCGUCUUUAAAAAAAAUUUAAGAUUUUUAACUUAUAAAUAAAAUUUAAUUUAUUA hit 10 : 239 140 (rev) 25.11 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A +A+U+AAA++A +A+AA:U:AUAUAA : AUA GG: +GU+U UA :A: 252 AUUAUUUAAAUUAUUAAAAUUUAUAUAA-AAUUCU-AUAGGGUCUUCUCGUCUUUAAAAA 309 <<<<_______>>>>>>>,,.))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGAC.UAuGAguaAauuuuauaUauuuu 103 ::A UAA U:::U:AC UAU:A:UAAA UUUA++U+ UU 310 AAAU--UUAAGAUUUUUAACuUAUAAAUAAAAUUUAAUUUAUUA 351 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #856,sp|AB008757.1|AB008757 Bacillus stearothermophilus cbaB and cbaA genes for subunit II and subunit I of b(o/a)3-type cytochrome c oxidase, complete cds. ----isReversed: 1 ----hitSequence: AAUGAAUCACGCUGACUCACUCAUAUAAUCGCAAGAAUACGGCUUGCGAGUCUCUACCAGCCGACCGUAAAUCGGCUGACUAUGAGUGGCAAUGUCAGGA hit 11 : 115 16 (rev) 78.10 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA+ A++ A ++A U:ACUCAUAUAAUC:C::GAAUA GGC::G:GAGU+UCUACCAG 3824 AAUGAAUCACGCUGACUCACUCAUAUAAUCGCAAGAAUACGGCUUGCGAGUCUCUACCAG 3883 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :C:ACCGUAAAU:G:CUGACUAUGAGU: +U++ A 3884 CCGACCGUAAAUCGGCUGACUAUGAGUGGCAAUGUCAGGA--- 3923 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #16407,sp|AC069311.6|AC069311 Staphylococcus aureus clone sabac-4, complete sequence. ----isReversed: 0 ----hitSequence: GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG hit 12 : 6197 6300 (fwd) 73.10 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 +AA++AA+++A A++AACUCAUAUAAU::::: AAUAUGG :::::AGUUUCUACCA 6197 GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGcUUUAGAAGUUUCUACCA 6256 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :G:+:CC U AA:+:C:UGACUAUGAGUAA + +AUA U 6257 UGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG 6300 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #21107,sp|AE006347.1|AE006347 Lactococcus lactis subsp. lactis IL1403 section 109 of 218 of the complete genome. ----isReversed: 0 ----hitSequence: UAGUCUAUAAUAGAACAAUCUUAUUUAUACCUAGGAUAUGGCUGGGCGUUUCUACCUCGUACCGUAAAUGCGAGACAAUAAGGAAAUUCGAUUUUUUAG hit 13 : 1212 1310 (fwd) 71.89 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +A + UA+AA+A AA +A:CU:AU+UA+ CC :G+AUAUGGC: GG +GUUUCUACC: 1212 UAGUCUAUAAUAGAACAAUCUUAUUUAU-ACCUAGGAUAUGGCUGGG-CGUUUCUACCUC 1269 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G A CCGUAAA U C :GAC+AU:AG:AAAUU +AU+U+UU 1270 GUA-CCGUAAA-UGCGAGACAAUAAGGAAAUUCGAUUUUUUAG 1310 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #21307,sp|AE006556.1|AE006556 Streptococcus pyogenes M1 GAS strain SF370, section 85 of 167 of the complete genome. ----isReversed: 0 ----hitSequence: UGAAUUCAAUAAUGACAUACUUAUUUAUGCUGUGAAUUGGCGCAGCGUCUCUACAAGACACCUUAAUGUCUAACAAUAAGUAAGCUUUUAGGCUU hit 14 : 1276 1370 (fwd) 63.78 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + AA+U AA+AA++A +:ACU:AU+UA+ +C:G GAAU UGGC C:G +GU+UCUAC:AG 1276 UGAAUUCAAUAAUGACAUACUUAUUUAU-GCUGUGAAU-UGGCGCAG-CGUCUCUACAAG 1332 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CA CC U AA UG:CU:AC+AU:AGU:A UUU++ UU 1333 ACA-CCUU-AA-UGUCUAACAAUAAGUAAGCUUUUAGGCUU-- 1370 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22221,sp|AE007476.1|AE007476 Streptococcus pneumoniae TIGR4 section 159 of 194 of the complete genome. ----isReversed: 0 ----hitSequence: AAAAUUGAAUAUCGUUUUACUUGUUUAUGUCGUGAAUUGGCACGACGUUUCUACAAGGUGCCGGAACACCUAACAAUAAGUAAGUCAGCAGUGAGAU hit 15 : 6452 6548 (fwd) 64.73 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAAA+U AA+A+ +++U:ACU::U+UA+ +:CG:GAAU UGGC:CG: +GUUUCUAC:AG 6452 AAAAUUGAAUAUCGUUUUACUUGUUUAU-GUCGUGAAU-UGGCACGA-CGUUUCUACAAG 6508 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:: CCG AA ::CCU:AC+A::AGU:A U + + U U 6509 GUG-CCGG-AA-CACCUAACAAUAAGUAAGUCAGCAGUGAGAU 6548 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22346,sp|AE007602.1|AE007602 Clostridium acetobutylicum ATCC824 section 90 of 356 of the complete genome. ----isReversed: 0 ----hitSequence: UAUAUAAAAAACUAAAUUUCUCGUAUACACCGGUAAUAUGGUCCGGAAGUUUCUACCUGCUGCCAUAAAUAGCAGACUACGGGGUGUUAUUGAUAAUAUA hit 16 : 8615 8714 (fwd) 77.01 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +A+A++AAAAA +AAAU :C:C:UAUA : CCGG:AAUAUGG:CCGG :GUUUCUACC:G 8615 UAUAUAAAAAACUAAAUUUCUCGUAUA-CACCGGUAAUAUGGUCCGGAAGUUUCUACCUG 8673 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :: CC UAAA ::C:GACUA:G:G: +U+UU ++ AU U 8674 CUG-CCAUAAA-UAGCAGACUACGGGGUGUUAUUGAUAAUAUA 8714 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22512,sp|AE007768.1|AE007768 Clostridium acetobutylicum ATCC824 section 256 of 356 of the complete genome. ----isReversed: 1 ----hitSequence: AAUCGUUAAUAUAGUUUAACUCAUAUAUUUCCUGAAUAUGGCAGGAUGUUUCUACAAGGAACCUUAAAUUUCUUACUAUGAGUGAUUUGUUUGUAUGCA hit 17 : 1788 1690 (rev) 78.31 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA+ U+AA+A+A+++U+ACUCAUAUA+ :CC: GAAUAUGGC :GG: GUUUCUAC:AG 11616 AAUCGUUAAUAUAGUUUAACUCAUAUAUUUCCU-GAAUAUGGC-AGGAUGUUUCUACAAG 11673 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::A CC UAAA U::CU:ACUAUGAGU+A+UU U+U UAU + 11674 GAA-CCUUAAA-UUUCUUACUAUGAGUGAUUUGUUUGUAUGCA 11714 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22519,sp|AE007775.1|AE007775 Clostridium acetobutylicum ATCC824 section 263 of 356 of the complete genome. ----isReversed: 1 ----hitSequence: GAAAAGUAAUAACAUAUUACCCGUAUAUGCUUAGAAAUAUGGUCUAAGCGUCUCUACCGGACUGCCGUAAAUUGUCUGACUAUGGGUGUUUAUAAGUAUUUUA hit 18 : 3558 3456 (rev) 79.79 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAAA +AA+AA A+AU AC:C:UAUA+:C:::G:AAUAUGG:C:::G:GU+UCUACC:G 6472 GAAAAGUAAUAACAUAUUACCCGUAUAUGCUUAGAAAUAUGGUCUAAGCGUCUCUACCGG 6531 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :C :CCGUAAA: G:C:GACUA:G:GU +U+U A + +UUU 6532 ACUGCCGUAAAUUGUCUGACUAUGGGUGUUUAUAAGUAUUUUA 6574 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #23270,sp|AE008531.1|AE008531 Streptococcus pneumoniae R6 section 147 of 184 of the complete genome. ----isReversed: 0 ----hitSequence: AAAAUUGAAUAUCGUUUUACUUGUUUAUGUCGUGAAUUGGCACGACGUUUCUACAAGGUGCCGGAACACCUAACAAUAAGUAAGUCAGCAGUGAGAU hit 19 : 9576 9672 (fwd) 64.73 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAAA+U AA+A+ +++U:ACU::U+UA+ +:CG:GAAU UGGC:CG: +GUUUCUAC:AG 9576 AAAAUUGAAUAUCGUUUUACUUGUUUAU-GUCGUGAAU-UGGCACGA-CGUUUCUACAAG 9632 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:: CCG AA ::CCU:AC+A::AGU:A U + + U U 9633 GUG-CCGG-AA-CACCUAACAAUAAGUAAGUCAGCAGUGAGAU 9672 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24747,sp|AE010036.1|AE010036 Streptococcus pyogenes strain MGAS8232, section 84 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: UGAAUUCAAUAAUGACAUACUUAUUUAUGCUGUGAAUUGGCGCAGCGUCUCUACAAGACACCUUAAUGUCUAACAAUAAGUAAGCUUUUAGGCUU hit 20 : 1276 1370 (fwd) 63.78 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + AA+U AA+AA++A +:ACU:AU+UA+ +C:G GAAU UGGC C:G +GU+UCUAC:AG 1276 UGAAUUCAAUAAUGACAUACUUAUUUAU-GCUGUGAAU-UGGCGCAG-CGUCUCUACAAG 1332 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CA CC U AA UG:CU:AC+AU:AGU:A UUU++ UU 1333 ACA-CCUU-AA-UGUCUAACAAUAAGUAAGCUUUUAGGCUU-- 1370 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25314,sp|AE010606.1|AE010606 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 148 of 197 of the complete genome. ----isReversed: 1 ----hitSequence: UAAAUAAUUUUAAUAAAAAUUCGUAUAAGCCUAAUAUAUGGAAGGGUGUCCCUACGGUUAACCAUAAAUUAACCAGCUACGAAAAAUGUUUUACUGUGUU hit 21 : 4680 4581 (rev) 65.46 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +AAA++A++++AA AA+A+:UC:UAUAA :CC: AUAUGG :GG:+GU+ CUAC :G 6466 UAAAUAAUUUUAAUAAAAAUUCGUAUAA-GCCUAAUAUAUGG-AAGGGUGUCCCUAC-GG 6522 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::AACC UAAAUU::C:+ CUA:GA:+AA+ UUU++ U U UU 6523 UUAACCAUAAAUUAACCAGCUACGAAAAAUGUUUUACUGUGUU 6565 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #27516,sp|AE013027.1|AE013027 Thermoanaerobacter tengcongensis strain MB4T, section 54 of 244 of the complete genome. ----isReversed: 0 ----hitSequence: AAAAAUUUAAUAAGAAGCACUCAUAUAAUCCCGAGAAUAUGGCUCGGGAGUCUCUACCGAACAACCGUAAAUUGUUCGACUAUGAGUGAAAGUGUACCUA hit 22 : 8237 8336 (fwd) 96.76 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAAAAU++AA+AA+AA :ACUCAUAUAAUCCCG:GAAUAUGGC:CGGGAGU+UCUACC:: 8237 AAAAAUUUAAUAAGAAGCACUCAUAUAAUCCCGAGAAUAUGGCUCGGGAGUCUCUACCGA 8296 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CAACCGUAAAUUG:::GACUAUGAGU:AA U+++ + 8297 ACAACCGUAAAUUGUUCGACUAUGAGUGAAAGUGUACCUA--- 8336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #28576,sp|AE014152.1|AE014152 Streptococcus pyogenes MGAS315, section 17 of 37 of the complete genome. ----isReversed: 0 ----hitSequence: UGAAUUCAAUAAUGACAUACUUAUUUAUGCUGUGAAUUGGCGCAGCGUCUCUACAAGACACCUUAAUGUCUAACAAUAAGUAAGCUUUUAGGCUU hit 23 : 30424 30518 (fwd) 63.78 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + AA+U AA+AA++A +:ACU:AU+UA+ +C:G GAAU UGGC C:G +GU+UCUAC:AG 30424 UGAAUUCAAUAAUGACAUACUUAUUUAU-GCUGUGAAU-UGGCGCAG-CGUCUCUACAAG 30480 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CA CC U AA UG:CU:AC+AU:AGU:A UUU++ UU 30481 ACA-CCUU-AA-UGUCUAACAAUAAGUAAGCUUUUAGGCUU-- 30518 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #28647,sp|AE014241.1|AE014241 Streptococcus agalactiae 2603V/R section 51 of 100 of the complete genome. ----isReversed: 1 ----hitSequence: CAAUUAAAUAUAUGAUUUACUUAUUUAUGCUGAGGAUUGGCUUAGCGUCUCUACAAGACACCGUAAUGUCUAACAAUAAGUAAGCUAAUAAAUAGCU hit 24 : 16113 16017 (rev) 68.13 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA+++AA+A+A++A+U:ACU:AU+UA+ +C:::G+AU UGGC:::G +GU+UCUAC:AG 5715 CAAUUAAAUAUAUGAUUUACUUAUUUAU-GCUGAGGAU-UGGCUUAG-CGUCUCUACAAG 5771 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CA CCGU AA UG:CU:AC+AU:AGU:A U ++A + +U 5772 ACA-CCGU-AA-UGUCUAACAAUAAGUAAGCUAAUAAAUAGCU 5811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30281,sp|AE015944.1|AE015944 Clostridium tetani E88, section 9 of 10 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUAUAAUAAAUUAUUGACUCAUAUAUCCCCUUAAUAAGGUAGGGAGUAUCUACCAGAAGCCUUAAACUUCUGACUAUGAGUGAAUAAAGCAUUGUCA hit 25 : 141656 141558 (rev) 71.34 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +AUAA+AAA+ A+U ACUCAUAUA+:CCC: :AAUA GG: :GGG:GU UCUACCAG 158550 CUCUAUAAUAAAUUAUUGACUCAUAUAUCCCCU-UAAUAAGGU-AGGGAGUAUCUACCAG 158607 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::: CC UAAA :::CUGACUAUGAGU AAU+ AU+ U+ 158608 AAG-CCUUAAA-CUUCUGACUAUGAGUGAAUAAAGCAUUGUCA 158648 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30291,sp|AE016752.1|AE016752 Staphylococcus epidermidis ATCC 12228, section 9 of 9 of the complete genome. ----isReversed: 1 ----hitSequence: CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU hit 26 : 24570 24467 (rev) 76.84 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 A+AA+A+AA+++A+AU:ACUCAUAUAAU::::: AAUAUGG :::::AGUUUCUACC: 66233 CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGcUUUAGAAGUUUCUACCG 66292 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :G:::CC UAAA:::C::GACUAUGAGU:A +U +AUA UU 66293 UGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU 66336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30343,sp|AE016809.1|AE016809 Vibrio vulnificus CMCP6 chromosome II section 2 of 6 of the complete sequence. ----isReversed: 0 ----hitSequence: GACUUUCGGCGAUCAACGCUUCAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUGAAGUCUGUCGCUUUAU hit 27 : 202495 202592 (fwd) 66.06 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A ++U A+ AA ::UCAUAUAAUCC::::+AUAUGG::::GGAGUUUCUACCA: 202495 GACUUUCGGCGAUCAACGCUUCAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAA 202554 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:: CC UAAA ::C:UGA UAUGA:: + U + U+UAU 202555 GAG-CCUUAAA-CUCUUGAUUAUGAAGUCUGUCGCUUUAU--- 202592 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30423,sp|AE016954.1|AE016954 Enterococcus faecalis V583, section 8 of 11 of the complete genome. ----isReversed: 1 ----hitSequence: UCCUAGAGAAACAUAGAAGCUUGUAUAAGGUCAAAAUACGGUUGACCGUCUCUACCCAGCACCGUAAAUGCUGGUCUAUAAGUGAAGAAGAGCGGAUAG hit 28 : 153893 153795 (rev) 51.93 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + +A A AAA A A ++ CU::UAUAA +:: ::AAUA GG:: :: +GU+UCUACC:: 146655 UCCUAGAGAAACAUAGAAGCUUGUAUAA-GGUCAAAAUACGGUUGAC-CGUCUCUACCCA 146712 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCA CCGUAAA UGC::G CUA::AG +AA + +A U 146713 GCA-CCGUAAA-UGCUGGUCUAUAAGUGAAGAAGAGCGGAUAG 146753 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30458,sp|AE016998.1|AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AGAUAAUAUAAAACGAUCCUUCAUAUAUCCUCAAUGAUAUGGUUUGAGAGUCUCUACCGGGUUACCGUAAACAACCUGACUAUGAAGGCAGUGUGUCUUAUAU hit 29 : 259601 259703 (fwd) 82.95 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A A+A++A+AAAA AU:::UCAUAUA+:C:C:::+AUAUGG:::G:G:GU+UCUACC:G 259601 AGAUAAUAUAAAACGAUCCUUCAUAUAUCCUCAAUGAUAUGGUUUGAGAGUCUCUACCGG 259660 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:+ CCGUAAA +:CC:GACUAUGA::: A U U U U+ U U 259661 GUUACCGUAAACAACCUGACUAUGAAGGCAGUGUGUCUUAUAU 259703 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30458,sp|AE016998.1|AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: GAAAAGUGAAUAUUAUGCCGUCGUAUAAUAUCGGGGAUAUGGCCCGAAAGUUUCUACCUAGCUACCGUAAAUGGCUUGACUACGAGGCGUUUUUAUAAAGGUG hit 30 : 261558 261660 (fwd) 79.40 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAAA + AA+A+ A+ :: UC:UAUAAU :CGGG+AUAUGGCCCG: AGUUUCUACC : 261558 GAAAAGUGAAUAUUAUGCCGUCGUAUAAUAUCGGGGAUAUGGCCCGAAAGUUUCUACCUA 261617 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GC+ACCGUAAAU+GC: GACUA:GA :: +UUUUAUA A U 261618 GCUACCGUAAAUGGCUUGACUACGAGGCGUUUUUAUAAAGGUG 261660 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30458,sp|AE016998.1|AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AGAAACAAUAAUAUAAGACCUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUCUCUACCUAACGACCGUUAUUCGUUAGACUAUGAGGGAAAGUCACUCGGUAU hit 31 : 298774 298876 (fwd) 72.92 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A AAA AA+AA+A AA +:CUCAUAUAAU::C:GG+AUAUGGCC:G::AGU+UCUACC:: 298774 AGAAACAAUAAUAUAAGACCUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUCUCUACCUA 298833 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :C:ACCGU A U:G:::GACUAUGAG:+AA U A + U U 298834 ACGACCGUUAUUCGUUAGACUAUGAGGGAAAGUCACUCGGUAU 298876 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30459,sp|AE016999.1|AE016999 Bacillus cereus ATCC 14579 section 2 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: UUAAUACGGACGAUGUUACCUCAUAUAUACUUGAUAAUAUGGAUCGAGAGUUUCUACCCGGCAACCUUAAAUUGCUGGACUAUGGGGAAAACUAAUGAAUAUU hit 32 : 36564 36462 (rev) 71.19 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + AA++ A A +UA:C:CAUAUA+:C::G:+AAUAUGG+:C::G:GUUUCUACC: 264493 UUAAUACGGACGAUGUUACCUCAUAUAUACUUGAUAAUAUGGAUCGAGAGUUUCUACCCG 264552 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCAACC UAAAUUGC :GACUAUG:G:AAA U AU AU UU 264553 GCAACCUUAAAUUGCUGGACUAUGGGGAAAACUAAUGAAUAUU 264595 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30462,sp|AE017002.1|AE017002 Bacillus cereus ATCC 14579 section 5 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AAAUAAAUAGUUAGCUACACUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGAAGUACCGUAAAUACUUUGACUAUGAGUGAGGACGAAUAUAAUU hit 33 : 301083 301185 (fwd) 84.56 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAA+A+A+A ++A+ ++:ACUCAUAUAAU::C:GG+AUAUGGCC:G::AGUUUCUACC:: 301083 AAAUAAAUAGUUAGCUACACUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGA 301142 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 : +ACCGUAAAU+ :::GACUAUGAGU:A + +A++ + UU 301143 AGUACCGUAAAUACUUUGACUAUGAGUGAGGACGAAUAUAAUU 301185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30470,sp|AE017010.1|AE017010 Bacillus cereus ATCC 14579 section 13 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUUCGAAAAGAAUCACUGCCUCAUAUAAUCUUGGAGAUAAGGUCCAUAAGUUUCUACCUGGCAACCAUGAAUUGCUAGACUAUGAGGGGAAAAGUGUGUAACA hit 34 : 138243 138141 (rev) 69.04 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + +AAA AA+ A U :CUCAUAUAAU:::GG:+AUA GG:CC:::AGUUUCUACC: 164239 CUUCGAAAAGAAUCACUGCCUCAUAUAAUCUUGGAGAUAAGGUCCAUAAGUUUCUACCUG 164298 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCAACC U AAUUGC :GACUAUGAG: A + ++ + + + 164299 GCAACCAUGAAUUGCUAGACUAUGAGGGGAAAAGUGUGUAACA 164341 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30476,sp|AE017024.1|AE017024 Bacillus anthracis str. Ames section 1 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AGAUAAUAUAAAACGAUCCUUCAUAUAUCCUCAAAGAUAAGGUUUGAGAGUCUCUACCGGGUUACCGUAAACAACCUGACUAUGAAGGCAGUGUGUCUUAUAU hit 35 : 260641 260743 (fwd) 78.67 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A A+A++A+AAAA AU:::UCAUAUA+:C:C:::+AUA GG:::G:G:GU+UCUACC:G 260641 AGAUAAUAUAAAACGAUCCUUCAUAUAUCCUCAAAGAUAAGGUUUGAGAGUCUCUACCGG 260700 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:+ CCGUAAA +:CC:GACUAUGA::: A U U U U+ U U 260701 GUUACCGUAAACAACCUGACUAUGAAGGCAGUGUGUCUUAUAU 260743 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30476,sp|AE017024.1|AE017024 Bacillus anthracis str. Ames section 1 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: GAAAAGUGAAUAUUAUGCCGUCGUAUAAUAUCGGGGAUAUGGCCCGAAAGUUUCUACCUAGCUACCGUAAAUGGCUUGACUACGAGGCGUUUUUAUAAAGGUG hit 36 : 262601 262703 (fwd) 79.40 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAAA + AA+A+ A+ :: UC:UAUAAU :CGGG+AUAUGGCCCG: AGUUUCUACC : 262601 GAAAAGUGAAUAUUAUGCCGUCGUAUAAUAUCGGGGAUAUGGCCCGAAAGUUUCUACCUA 262660 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GC+ACCGUAAAU+GC: GACUA:GA :: +UUUUAUA A U 262661 GCUACCGUAAAUGGCUUGACUACGAGGCGUUUUUAUAAAGGUG 262703 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30477,sp|AE017025.1|AE017025 Bacillus anthracis str. Ames section 2 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AAAGAAUAAUAUAUAAGACCUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUCUCUACCUAACGACCGUUAUUCGUUAGACUAUGAGGGAAAGUCACUCGGUAU hit 37 : 5362 5464 (fwd) 75.34 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAA A++AA+A+A AA +:CUCAUAUAAU::C:GG+AUAUGGCC:G::AGU+UCUACC:: 5362 AAAGAAUAAUAUAUAAGACCUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUCUCUACCUA 5421 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :C:ACCGU A U:G:::GACUAUGAG:+AA U A + U U 5422 ACGACCGUUAUUCGUUAGACUAUGAGGGAAAGUCACUCGGUAU 5464 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30477,sp|AE017025.1|AE017025 Bacillus anthracis str. Ames section 2 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: UUAAUACGGACGAUGUUACCUCAUAUAUACUCGAUAAUAUGGAUCGAGAGUUUCUACCCGGCAACCUUAAAUUGCUGGACUAUGGGGAAAACUAAUGAAUAUU hit 38 : 52387 52285 (rev) 74.52 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + AA++ A A +UA:C:CAUAUA+:C:CG:+AAUAUGG+:CG:G:GUUUCUACC: 238328 UUAAUACGGACGAUGUUACCUCAUAUAUACUCGAUAAUAUGGAUCGAGAGUUUCUACCCG 238387 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCAACC UAAAUUGC :GACUAUG:G:AAA U AU AU UU 238388 GCAACCUUAAAUUGCUGGACUAUGGGGAAAACUAAUGAAUAUU 238430 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30481,sp|AE017029.1|AE017029 Bacillus anthracis str. Ames section 6 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AAAUAAAUAGUUAGCUACACUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGAAGUACCGUAAAUACUUUGACUAUGAGUGAGGACGAAUAUAUUU hit 39 : 46768 46870 (fwd) 85.41 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAA+A+A+A ++A+ ++:ACUCAUAUAAU::C:GG+AUAUGGCC:G::AGUUUCUACC:: 46768 AAAUAAAUAGUUAGCUACACUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGA 46827 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 : +ACCGUAAAU+ :::GACUAUGAGU:A + +A++ + UUU 46828 AGUACCGUAAAUACUUUGACUAUGAGUGAGGACGAAUAUAUUU 46870 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30488,sp|AE017036.1|AE017036 Bacillus anthracis str. Ames section 13 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUUCGAAAAGAAUCACUGCCUCAUAUAAUCUUGGAGAUAAGGUCCAUAAGUUUCUACCUGGCAACCAUGAAUUGCUAGACUAUGAGGGGAAAAGUGUGUAACA hit 40 : 96483 96381 (rev) 69.04 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + +AAA AA+ A U :CUCAUAUAAU:::GG:+AUA GG:CC:::AGUUUCUACC: 194548 CUUCGAAAAGAAUCACUGCCUCAUAUAAUCUUGGAGAUAAGGUCCAUAAGUUUCUACCUG 194607 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCAACC U AAUUGC :GACUAUGAG: A + ++ + + + 194608 GCAACCAUGAAUUGCUAGACUAUGAGGGGAAAAGUGUGUAACA 194650 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #10027,sp|AF269738.1|AF269738 Staphylococcus epidermidis strain SR1 clone step.1020h07 genomic sequence. ----isReversed: 0 ----hitSequence: CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU hit 41 : 1414 1517 (fwd) 76.84 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 A+AA+A+AA+++A+AU:ACUCAUAUAAU::::: AAUAUGG :::::AGUUUCUACC: 1414 CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGcUUUAGAAGUUUCUACCG 1473 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :G:::CC UAAA:::C::GACUAUGAGU:A +U +AUA UU 1474 UGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU 1517 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #10114,sp|AF269825.1|AF269825 Staphylococcus epidermidis strain SR1 clone step.1024f07 genomic sequence. ----isReversed: 1 ----hitSequence: CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU hit 42 : 751 648 (rev) 76.84 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 A+AA+A+AA+++A+AU:ACUCAUAUAAU::::: AAUAUGG :::::AGUUUCUACC: 2419 CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGcUUUAGAAGUUUCUACCG 2478 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :G:::CC UAAA:::C::GACUAUGAGU:A +U +AUA UU 2479 UGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU 2522 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #10376,sp|AF270087.1|AF270087 Staphylococcus epidermidis strain SR1 clone step.1048a12 genomic sequence. ----isReversed: 0 ----hitSequence: CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGCUUUAGAAGUUUCUACCGUGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU hit 43 : 2577 2680 (fwd) 76.84 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 A+AA+A+AA+++A+AU:ACUCAUAUAAU::::: AAUAUGG :::::AGUUUCUACC: 2577 CAUAAAAUAAUUUAUAUGACUCAUAUAAUCUAGAGAAUAUGGcUUUAGAAGUUUCUACCG 2636 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :G:::CC UAAA:::C::GACUAUGAGU:A +U +AUA UU 2637 UGUCGCCAUAAACGACACGACUAUGAGUAACAAUCCAAUACAUU 2680 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #18307,sp|AF327738.1|AF327738 Streptococcus thermophilus strain CNRZ1205 Hpk1 (hpk1), response regulator Rr1 (rr1), and xanthine phosphoribosyltransferase (xpt) genes, complete cds; xanthine permease (xp) gene, partial cds; and unknown gene. ----isReversed: 0 ----hitSequence: CAAACAAUGAGAACAUUACUUAUUUAUGUCACGAAUGGGCGUGACUUUCCUAUCAAGGUGCCGUACCACCUAACAAUAAUUAACCUAUWUUAUUCA hit 44 : 2512 2607 (fwd) 29.04 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,.,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUA.CCa 59 AAA +A+ A AA A+U A U:AU+UA+ +:C: GAAU GGC :G: + UU CUA C:A 2512 CAAACAAUGAGAACAUU-ACUUAUUUAU-GUCACGAAU-GGGCGUGA-CUUUCCUAuCAA 2567 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GG:: CCGU A ::CCU:AC+AU:A U AA U +++UAUU+ 2568 GGUG-CCGU-AC-CACCUAACAAUAAUU-AACCUAUWUUAUUCA 2607 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #409,sp|AL591975.1|AL591975 Listeria monocytogenes strain EGD, complete genome, segment 3/12 ----isReversed: 1 ----hitSequence: AAUCCGCUACAAUAAUAUAGUCGUAUAAGUUCGGUAAUAUGGACCGUUCGUUUCUACCAGGCAACCGUAAAAUGCCAGGCUACGAGCUAUUGUAAAAUUUAAU hit 45 : 251119 251017 (rev) 78.43 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA+ +A AA+AA++ UC:UAUAA:::CGG+AAUAUGG+CCG:::GUUUCUACC G 28932 AAUCCGCUACAAUAAUAUAGUCGUAUAAGUUCGGUAAUAUGGACCGUUCGUUUCUACCAG 28991 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCA:CCGUAAA:UGCC G CUA:GA A+U U A+AU+U U 28992 GCAACCGUAAAAUGCCAGGCUACGAGCUAUUGUAAAAUUUAAU 29034 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #415,sp|AL591981.1|AL591981 Listeria monocytogenes strain EGD, complete genome, segment 9/12 ----isReversed: 1 ----hitSequence: AUAACUUAAAACCGAAAUACUUGUAUAAUAGUUGCGAUUGGGCGACGAGUUUCUACCUGGUUACCGUAAAUAACCGGACUAUGAGUAGUUUGUAUAAAGAAG hit 46 : 205922 205821 (rev) 78.36 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A AA U+AAAA +AA+:ACU::UAUAAU+:: G:+AU UGG:C ::+AGUUUCUACC G 141129 AUAACUUAAAACCGAAAUACUUGUAUAAUAGUUGCGAU-UGGGCGACGAGUUUCUACCUG 141187 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:+ACCGUAAAU+:CC GACUA::AGU: +UU UAUA A 141188 GUUACCGUAAAUAACCGGACUAUGAGUAGUUUGUAUAAAGAAG 141230 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #421,sp|AL596165.1|AL596165 Listeria innocua Clip11262 complete genome, segment 3/12 ----isReversed: 1 ----hitSequence: AAUCGUCUACAAUAAUAAAGUCGUAUAAGUUCGGUAAUAUGGACCGUUCGUUUCUACCAGGCAACCGUAAAAUGCCAGGCUACGAGCUAUUGUAAAAUUUAAU hit 47 : 154156 154054 (rev) 79.45 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA+ U +A AA+AA++ UC:UAUAA:::CGG+AAUAUGG+CCG:::GUUUCUACC G 94895 AAUCGUCUACAAUAAUAAAGUCGUAUAAGUUCGGUAAUAUGGACCGUUCGUUUCUACCAG 94954 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCA:CCGUAAA:UGCC G CUA:GA A+U U A+AU+U U 94955 GCAACCGUAAAAUGCCAGGCUACGAGCUAUUGUAAAAUUUAAU 94997 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #426,sp|AL596170.1|AL596170 Listeria innocua Clip11262 complete genome, segment 8/12 ----isReversed: 1 ----hitSequence: AUAACUUAAAACCGAAAUACUUAUAUAAUAGUUGCGAUUGGGCGACGAGUUUCUACCUGGUUACCGUAAAUAACCGGACUAUGAGUAGUUUGUAUAAAGAAG hit 48 : 223345 223244 (rev) 79.58 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A AA U+AAAA +AA+:ACU:AUAUAAU+:: G:+AU UGG:C ::+AGUUUCUACC G 90106 AUAACUUAAAACCGAAAUACUUAUAUAAUAGUUGCGAU-UGGGCGACGAGUUUCUACCUG 90164 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:+ACCGUAAAU+:CC GACUAU:AGU: +UU UAUA A 90165 GUUACCGUAAAUAACCGGACUAUGAGUAGUUUGUAUAAAGAAG 90207 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #489,sp|AL935260.1|AL935260 Lactobacillus plantarum strain WCFS1 complete genome; segment 9/11 ----isReversed: 0 ----hitSequence: UUCAAAUAAGUGGUAAUUGCCUAUAUAAUGUCAUGAUAUGGUUGACGAGUUUCUACCCAACCCCGUAAAGGUUGGACUAUAAGCAAACGAGGUCAUC hit 49 : 2478 2574 (fwd) 49.88 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + AA++AA + AAU: C::AUAUAAU :: ::+AUAUGG:: ::GAGUUUCUACC:: 2478 UUCAAAUAAGUGGUAAUUGCCUAUAUAAU-GUCAUGAUAUGGUUGACGAGUUUCUACCCA 2536 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :C: CCGUAAA :G:::GACUAU::G :AA + U + 2537 ACC-CCGUAAA-GGUUGGACUAUAAGCAAACGAGGUCAUC--- 2574 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #490,sp|AL935261.1|AL935261 Lactobacillus plantarum strain WCFS1 complete genome; segment 10/11 ----isReversed: 1 ----hitSequence: UUAUCAAUACAACUAAUUGCCUAUAUAAUGCCAUGAUAUGGAUGGCGAGUUUCUACCCAGUGCCGUAAACACUGGACUAUAAGCGAAUUGAGUCGAC hit 50 : 262830 262734 (rev) 60.28 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + A+ +A+A AA AAU C::AUAUAAU: C :++AUAUGG+: G :AGUUUCUACC:: 35221 UUAUCAAUACAACUAAUUGCCUAUAUAAUGCC-AUGAUAUGGAUGGCGAGUUUCUACCCA 35279 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:: CCGUAAA ::C::GACUAU::G AAUU U A 35280 GUG-CCGUAAA-CACUGGACUAUAAGCGAAUUGAGUCGAC--- 35317 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #928,sp|AP001509.1|AP001509 Bacillus halodurans genomic DNA, section 3/14. ----isReversed: 0 ----hitSequence: ACAUGUAGAUAUCAUCCCUUUCGUAUAUACUUGGAGAUAAGGUCCAGGAGUUUCUACCAGAUCACCGUAAAUGAUCUGACUAUGAAGGUGGAAUGGCUCGAUA hit 51 : 51442 51544 (fwd) 72.87 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A A+ UA A+A+ A+ :::UC:UAUA+:C::GG:+AUA GG:CC::G:GUUUCUACCAG 51442 ACAUGUAGAUAUCAUCCCUUUCGUAUAUACUUGGAGAUAAGGUCCAGGAGUUUCUACCAG 51501 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :::ACCGUAAAU:::CUGACUA:GA::: + U U U 51502 AUCACCGUAAAUGAUCUGACUAUGAAGGUGGAAUGGCUCGAUA 51544 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #928,sp|AP001509.1|AP001509 Bacillus halodurans genomic DNA, section 3/14. ----isReversed: 0 ----hitSequence: AAUAAAUCGAAAACAUCAUUUCGUAUAAUGGCAGGAAUAGGGCCUGCGAGUUUCUACCAAGCUACCGUAAAUAGCUUGACUACGAAAAUAAUGGGUUUUUUAC hit 52 : 53309 53411 (fwd) 87.28 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA+AA++ AAAA A+ A+:UC:UAUAAU::C:GGAAUA GGCC:G::AGUUUCUACCA: 53309 AAUAAAUCGAAAACAUCAUUUCGUAUAAUGGCAGGAAUAGGGCCUGCGAGUUUCUACCAA 53368 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GC+ACCGUAAAU+GC:UGACUA:GA:+A A U + U+U+UU 53369 GCUACCGUAAAUAGCUUGACUACGAAAAUAAUGGGUUUUUUAC 53411 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #928,sp|AP001509.1|AP001509 Bacillus halodurans genomic DNA, section 3/14. ----isReversed: 0 ----hitSequence: CGUUCUUUAUAUAAAGUACCUCAUAUAAUCUUGGGAAUAUGGCCCAAAAGUUUCUACCUGCUGACCGUAAAUCGGCGGACUAUGGGGAAAGAUUUUGGAUCUU hit 53 : 79475 79577 (fwd) 89.28 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 ++ U++A+A+AAA UA:C:CAUAUAAU:::GGGAAUAUGGCCC:::AGUUUCUACC G 79475 CGUUCUUUAUAUAAAGUACCUCAUAUAAUCUUGGGAAUAUGGCCCAAAAGUUUCUACCUG 79534 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 : :ACCGUAAAU: :C GACUAUG:G:AAA +UU+U AU UU 79535 CUGACCGUAAAUCGGCGGACUAUGGGGAAAGAUUUUGGAUCUU 79577 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #928,sp|AP001509.1|AP001509 Bacillus halodurans genomic DNA, section 3/14. ----isReversed: 0 ----hitSequence: UUAAUCGAGCUCAACACUCUUCGUAUAUCCUCUCAAUAUGGGAUGAGGGUCUCUACAGGUACCGUAAAUACCUAGCUACGAAAAGAAUGCAGUUAAUGU hit 54 : 209873 209971 (fwd) 60.60 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + AA+ A + AA A :::UC:UAUA+:C:C ::AAUAUGG::+G:G:GU+UCUAC AG 209873 UUAAUCGAGCUCAACACUCUUCGUAUAUCCUC-UCAAUAUGGGAUGAGGGUCUCUAC-AG 209930 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:A CCGUAAA U:CCU+ CUA:GA::: A U A +UA U U 209931 GUA-CCGUAAA-UACCUAGCUACGAAAAGAAUGCAGUUAAUGU 209971 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #931,sp|AP001512.1|AP001512 Bacillus halodurans genomic DNA, section 6/14. ----isReversed: 1 ----hitSequence: AUUUACAUUAAAAAAAGCACUCGUAUAAUCGCGGGAAUAGGGCCCGCAAGUUUCUACCAGGCUGCCGUAAACAGCCUGACUACGAGUGAUACUUUGACAUAGA hit 55 : 93774 93672 (rev) 90.86 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A ++A A++AAAAAAA :ACUC:UAUAAU::CGGGAAUA GGCCCG::AGUUUCUACCAG 206777 AUUUACAUUAAAAAAAGCACUCGUAUAAUCGCGGGAAUAGGGCCCGCAAGUUUCUACCAG 206836 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GC+:CCGUAAA:+GCCUGACUA:GAGU:A+ UU+ A AU 206837 GCUGCCGUAAACAGCCUGACUACGAGUGAUACUUUGACAUAGA 206879 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #992,sp|AP003130.2|AP003130 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 2/10. ----isReversed: 0 ----hitSequence: GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG hit 56 : 132797 132900 (fwd) 73.10 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 +AA++AA+++A A++AACUCAUAUAAU::::: AAUAUGG :::::AGUUUCUACCA 132797 GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGcUUUAGAAGUUUCUACCA 132856 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :G:+:CC U AA:+:C:UGACUAUGAGUAA + +AUA U 132857 UGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG 132900 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1003,sp|AP003186.2|AP003186 Clostridium perfringens str. 13 DNA, complete genome, section 2/10. ----isReversed: 0 ----hitSequence: UGUACUUAUAUAAGUAUAUCGUAUAUGCUCGACGAUAUGGGUUGAGUGUUUCUACUAGGAGGCCGUAAACAUCCUAACUACGAAUAUAUAGGUGAUUUCUA hit 57 : 121422 121522 (fwd) 76.94 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + +A U+A+A+AA++AUA UC:UAUA+:C:C:::+AUAUGG:::G:G:GUUUCUAC:AG 121422 UGUACUUAUAUAAGUAUA--UCGUAUAUGCUCGACGAUAUGGGUUGAGUGUUUCUACUAG 121479 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G: :CCGUAAA: :CCU:ACUA:GA+UA AU+ ++ AU+U U 121480 GAGGCCGUAAACAUCCUAACUACGAAUAUAUAGGUGAUUUCUA 121522 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1003,sp|AP003186.2|AP003186 Clostridium perfringens str. 13 DNA, complete genome, section 2/10. ----isReversed: 1 ----hitSequence: UAAGUGUAUUAAAUUUUAACUCGUAUAUAAUCGGUAAUAUGGUCCGAAAGUUUCUACCUGCUAACCGUAAAAUAGCAGACUACGAGGAGUUGUACUAUAAAUU hit 58 : 211688 211586 (rev) 90.03 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +AA + +A++AAA ++UA CUC:UAUA+: :CGG:AAUAUGG:CCG: :GUUUCUACC:G 90613 UAAGUGUAUUAAAUUUUAACUCGUAUAUAAUCGGUAAUAUGGUCCGAAAGUUUCUACCUG 90672 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::A:CCGUAAA:U::C:GACUA:GAG A +U U UAUA UU 90673 CUAACCGUAAAAUAGCAGACUACGAGGAGUUGUACUAUAAAUU 90715 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1010,sp|AP003193.2|AP003193 Clostridium perfringens str. 13 DNA, complete genome, section 9/10. ----isReversed: 1 ----hitSequence: AAAACGGAAUAUAAACAAACUCGUAUAAGCUUUGAAUAAGGCAAGGCGUUUCUACCGGAAACCUUAAAUUUCCGUCUAUGAGUGAAUUUGAUAUACUAU hit 59 : 214121 214023 (rev) 78.90 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAAA AA+A+AAA ++ACUC:UAUAA :C:::GAAUA GG :::G:+GUUUCUACC:G 89130 AAAACGGAAUAUAAACAAACUCGUAUAA-GCUUUGAAUAAGG-CAAGGCGUUUCUACCGG 89187 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::A CC UAAA U::C:G CUA:GAGU+AAUUU+AUAUA U U 89188 AAA-CCUUAAA-UUUCCGUCUAUGAGUGAAUUUGAUAUACUAU 89228 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1011,sp|AP003194.2|AP003194 Clostridium perfringens str. 13 DNA, complete genome, section 10/10. ----isReversed: 1 ----hitSequence: AUAAAAAAAUAAAUUUUGCUUCGUAUAACUCUAAUGAUAUGGAUUAGAGGUCUCUACCAAGAACCGAGAAUUCUUGAUUACGAAGAAAGCUUAUUUGCUUU hit 60 : 163701 163601 (rev) 79.48 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A AAA+AAA+AAA ++U:::UC:UAUAA::C:::++AUAUGG+:::G::GU+UCUACCA: 160230 AUAAAAAAAUAAAUUUUGCUUCGUAUAACUCUAAUGAUAUGGAUUAGAGGUCUCUACCAA 160289 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:A CCG AA U:C:UGA UA:GA:::AA UUAU+U UUU 160290 GAA-CCGAGAA-UUCUUGAUUACGAAGAAAGCUUAUUUGCUUU 160330 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1013,sp|AP003359.2|AP003359 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 2/9. ----isReversed: 0 ----hitSequence: GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG hit 61 : 80810 80913 (fwd) 73.10 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 +AA++AA+++A A++AACUCAUAUAAU::::: AAUAUGG :::::AGUUUCUACCA 80810 GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGcUUUAGAAGUUUCUACCA 80869 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :G:+:CC U AA:+:C:UGACUAUGAGUAA + +AUA U 80870 UGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG 80913 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1057,sp|AP004595.1|AP004595 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. ----isReversed: 0 ----hitSequence: CAAUUUUUAUCCAAUGCCUUUCGUAUAUCCUCGAUAAUAUGGUUCGAAAGUAUCUACCGGGUCACCGUAAAUGAUCUGACUAUGAAGGCAGAAGCAGGUU hit 62 : 160373 160472 (fwd) 76.92 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA++U++A+ AA+ :::UC:UAUA+:::CG::AAUAUGG::CG:::GU UCUACC:G 160373 CAAUUUUUAUCCAAUGCCUUUCGUAUAUCCUCGAUAAUAUGGUUCGAAAGUAUCUACCGG 160432 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :::ACCGUAAAU:::C:GACUA:GA::: A + + + +U 160433 GUCACCGUAAAUGAUCUGACUAUGAAGGCAGAAGCAGGUU--- 160472 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1057,sp|AP004595.1|AP004595 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. ----isReversed: 0 ----hitSequence: UGAUGUAAUUGAAUAGAAAUGCGUAUAAUUAAGGGGAUAUGGCCCACAGUUUCUACCAGACCACCGUAAAUGGUUUGACUACGCAGUAAUUAUAUUUGUAUC hit 63 : 169586 169687 (fwd) 74.12 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + A+ UAA++ AA A + ::C:UAUAAU:::GGG+AUAUGG CC:::AGUUUCUACCA 169586 UGAUGUAAUUGAAUAGAAAUGCGUAUAAUUAAGGGGAUAUGG-CCCACAGUUUCUACCAG 169644 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :C:ACCGUAAAU:G: UGACUA:G:: AAUU UAU+U U U 169645 ACCACCGUAAAUGGUUUGACUACGCAGUAAUUAUAUUUGUAUC 169687 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1057,sp|AP004595.1|AP004595 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. ----isReversed: 0 ----hitSequence: ACAAUUGAAAAUGAACCUCAUAUAAAUUUGAGAAUAUGGCUCAGAAGUUUCUACCCAGCACCGUAAAUGGCUGGACUAUGAGGGAAGAUGGAUCAUUUC hit 64 : 186670 186768 (fwd) 75.87 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A +A++ AAAA+ ++:CUCAUAUAA::::G:GAAUAUGGC:C::::GUUUCUACC:: 186670 ---ACAAUUGAAAAUGAACCUCAUAUAAAUUUGAGAAUAUGGCUCAGAAGUUUCUACCCA 186726 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GC ACCGUAAAU GC::GACUAUGAG:+AA +U+ ++ AUUU 186727 GC-ACCGUAAAUGGCUGGACUAUGAGGGAAGAUGGAUCAUUUC 186768 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1058,sp|AP004596.1|AP004596 Oceanobacillus iheyensis HTE831 genomic DNA, section 4/13. ----isReversed: 0 ----hitSequence: AAACCUUAUAUAUAGUUUUUUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGGUUUACCGUAAAUGAACCGACUAUGGAAAAGCGGAAAAUUCGAU hit 65 : 203843 203945 (fwd) 84.95 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAA U+A+A+A+A +U:+::CAUAUAAU::C:GG+AUAUGGCC:G::AGUUUCUACC:G 203843 AAACCUUAUAUAUAGUUUUUUCAUAUAAUCGCGGGGAUAUGGCCUGCAAGUUUCUACCGG 203902 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::+ACCGUAAAU+::C:GACUAUG::+:A A+AU+ U 203903 UUUACCGUAAAUGAACCGACUAUGGAAAAGCGGAAAAUUCGAU 203945 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1069,sp|AP004823.1|AP004823 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 2/10. ----isReversed: 0 ----hitSequence: GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG hit 66 : 120346 120449 (fwd) 73.10 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 +AA++AA+++A A++AACUCAUAUAAU::::: AAUAUGG :::::AGUUUCUACCA 120346 GUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGcUUUAGAAGUUUCUACCA 120405 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :G:+:CC U AA:+:C:UGACUAUGAGUAA + +AUA U 120406 UGUUGCCUUGAACGACAUGACUAUGAGUAACAACACAAUACUAG 120449 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1124,sp|AP005088.1|AP005088 Vibrio parahaemolyticus DNA, chromosome 2, complete sequence, 5/6. ----isReversed: 0 ----hitSequence: UAUAAUCGCAAGCGUUUGCUUCGUAUAACCCCAAUGAUAUGGUUUGGGGGUCUCUACCAGUUCCCGCAAAGUGCUGAUUACGAAGAGUUGAGAUCACUGUG hit 67 : 167671 167771 (fwd) 60.05 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +A+AAU AA +++U:::UC:UAUAA:CCC:::+AUAUGG:::GGG:GU+UCUACCAG 167671 UAUAAUCGCAAGCGUUUGCUUCGUAUAACCCCAAUGAUAUGGUUUGGGGGUCUCUACCAG 167730 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 : CCG AAA : CUGA UA:GA::: +U +AU U U 167731 UUC-CCGCAAA-GUGCUGAUUACGAAGAGUUGAGAUCACUGUG 167771 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1129,sp|AP005144.1|AP005144 Streptococcus pyogenes SSI-1 DNA, complete genome, section 4/6. ----isReversed: 0 ----hitSequence: UGAAUUCAAUAAUGACAUACUUAUUUAUGCUGUGAAUUGGCGCAGCGUCUCUACAAGACACCUUAAUGUCUAACAAUAAGUAAGCUUUUAGGCUU hit 68 : 43827 43921 (fwd) 63.78 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + AA+U AA+AA++A +:ACU:AU+UA+ +C:G GAAU UGGC C:G +GU+UCUAC:AG 43827 UGAAUUCAAUAAUGACAUACUUAUUUAU-GCUGUGAAU-UGGCGCAG-CGUCUCUACAAG 43883 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CA CC U AA UG:CU:AC+AU:AGU:A UUU++ UU 43884 ACA-CCUU-AA-UGUCUAACAAUAAGUAAGCUUUUAGGCUU-- 43921 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #14913,sp|AY136815.1|AY136815 Spiroplasma citri SC76 gene, complete cds. ----isReversed: 0 ----hitSequence: UAUAAAAAUAAAUUAUAUAUCUGUAUAUACUAGUAAUAUGGUCUAGUGUUUCUACGUCUUACCAUUGGAAGAAGACGCUAUAGGUUAAUGCUUUUGCUUUU hit 69 : 661 761 (fwd) 43.12 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +A+AA+AA+AAA+ A++ A :::UAUA+ C::G:AAUAUGG:C::G +GUUUCUAC : 661 UAUAAAAAUAAAUUAUAUAUCUGUAUAU-ACUAGUAAUAUGGUCUAG-UGUUUCUACGUC 718 <<<<____..___>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGU..AAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :: CC U AA :: : CUA::: U AAU U+U+ UUUU 719 UUA-CCAUugGAA-GAAGACGCUAUAGGUUAAUGCUUUUGCUUUU 761 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #40073,sp|D83026.1|BSD026 Bacillus subtilis genome sequence covering lic-cel region. ----isReversed: 1 ----hitSequence: CAUCUUAGAAAAAGACAUUCUUGUAUAUGAUCAGUAAUAUGGUCUGAUUGUUUCUACCUAGUAACCGUAAAAAACUAGACUACAAGAAAGUUUGAAUAAAUUU hit 70 : 18553 18451 (rev) 88.63 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A+ +UA AAAAA+A +:+CU::UAUA+: :C:G:AAUAUGG:C:G: :GUUUCUACC:: 46591 CAUCUUAGAAAAAGACAUUCUUGUAUAUGAUCAGUAAUAUGGUCUGAUUGUUUCUACCUA 46650 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:+:CCGUAAA:+:C::GACUA::AG+:A UUU+A++ A UUU 46651 GUAACCGUAAAAAACUAGACUACAAGAAAGUUUGAAUAAAUUU 46693 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #40106,sp|D88802.1|BSD802 Bacillus subtilis DNA for phoB-rrnE-groESL region, complete cds. ----isReversed: 1 ----hitSequence: AAUUAAAUAGCUAUUAUCACUUGUAUAACCUCAAUAAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGAUUACAAAAUUUGUUUAUGACAUUU hit 71 : 12464 12364 (rev) 74.95 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA++A+A+A +A +AU:+:U::UAUAA:C:C:::AAUAUGG:::G:G:GU UCUACCAG 23845 AAUUAAAUAGCUAUUAUCACUUGUAUAACCUCAAUAAUAUGGUUUGAGGGUGUCUACCAG 23904 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:+ CCGUAAA +:CCUGA UA::A:+: + UUUAU UUU 23905 GAA-CCGUAAA-AUCCUGAUUACAAAAUUUGUUUAUGACAUUU 23945 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #41327,sp|J02732.1|BSPURF01 B.subtilis pur operon encoding purine biosynthesis enzymes, 12 genes. ----isReversed: 0 ----hitSequence: CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCGGCAACCGUAAAUUGCCGGACUAUGCAGGAAAGUGAUCGAUAAA hit 72 : 196 298 (fwd) 81.00 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A+ A+A+ AAAA A +:: CAUAUAAU:::GGGAAUAUGGCCC:::AGUUUCUACC:G 196 CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCG 255 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCAACCGUAAAUUGCC:GACUAUG ::+AA U+AU AU 256 GCAACCGUAAAUUGCCGGACUAUGCAGGAAAGUGAUCGAUAAA 298 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42301,sp|U51115.1|BSU51115 Bacillus subtilis CotA (cotA), GabP (gabP), YeaB (yeaB), YeaC (yeaC), YebA (yebA), GMP synthetase (guaA) genes, complete cds, and AIR carboxylase I (purE) gene, partial cds. ----isReversed: 0 ----hitSequence: AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAAGCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUUG hit 73 : 11655 11757 (fwd) 86.19 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A AAAU AAA+AA+A+ A+: C:UAUAAU::CG:GAAUAUGGC:CG::AGU+UCUACCA: 11655 AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAA 11714 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GC+ACCGUAAAU+GC:UGACUA:G :+A AUUU +U+ UUU 11715 GCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUUG 11757 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42301,sp|U51115.1|BSU51115 Bacillus subtilis CotA (cotA), GabP (gabP), YeaB (yeaB), YeaC (yeaC), YebA (yebA), GMP synthetase (guaA) genes, complete cds, and AIR carboxylase I (purE) gene, partial cds. ----isReversed: 0 ----hitSequence: CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCGGCAACCGUAAAUUGCCGGACUAUGCAGGGAAGUGAUCGAUAAA hit 74 : 15589 15691 (fwd) 79.30 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A+ A+A+ AAAA A +:: CAUAUAAU:::GGGAAUAUGGCCC:::AGUUUCUACC:G 15589 CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCG 15648 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCAACCGUAAAUUGCC:GACUAUG ::+ A U+AU AU 15649 GCAACCGUAAAUUGCCGGACUAUGCAGGGAAGUGAUCGAUAAA 15691 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42384,sp|Z99107.2|BSUB0004 Bacillus subtilis complete genome (section 4 of 21): from 611631 to 813719. ----isReversed: 0 ----hitSequence: AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAAGCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUUG hit 75 : 82145 82247 (fwd) 86.19 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A AAAU AAA+AA+A+ A+: C:UAUAAU::CG:GAAUAUGGC:CG::AGU+UCUACCA: 82145 AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAA 82204 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GC+ACCGUAAAU+GC:UGACUA:G :+A AUUU +U+ UUU 82205 GCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUUG 82247 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42384,sp|Z99107.2|BSUB0004 Bacillus subtilis complete genome (section 4 of 21): from 611631 to 813719. ----isReversed: 0 ----hitSequence: CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCGGCAACCGUAAAUUGCCGGACUAUGCAGGAAAGUGAUCGAUAAA hit 76 : 86081 86183 (fwd) 81.00 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A+ A+A+ AAAA A +:: CAUAUAAU:::GGGAAUAUGGCCC:::AGUUUCUACC:G 86081 CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCG 86140 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 GCAACCGUAAAUUGCC:GACUAUG ::+AA U+AU AU 86141 GCAACCGUAAAUUGCCGGACUAUGCAGGAAAGUGAUCGAUAAA 86183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42384,sp|Z99107.2|BSUB0004 Bacillus subtilis complete genome (section 4 of 21): from 611631 to 813719. ----isReversed: 1 ----hitSequence: AAUUAAAUAGCUAUUAUCACUUGUAUAACCUCAAUAAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGAUUACAAAAUUUGUUUAUGACAUUU hit 77 : 14363 14263 (rev) 74.95 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA++A+A+A +A +AU:+:U::UAUAA:C:C:::AAUAUGG:::G:G:GU UCUACCAG 187727 AAUUAAAUAGCUAUUAUCACUUGUAUAACCUCAAUAAUAUGGUUUGAGGGUGUCUACCAG 187786 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:+ CCGUAAA +:CCUGA UA::A:+: + UUUAU UUU 187787 GAA-CCGUAAA-AUCCUGAUUACAAAAUUUGUUUAUGACAUUU 187827 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42392,sp|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to 2409180. ----isReversed: 1 ----hitSequence: UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGGUGAGCAAUGGAACCGCA hit 78 : 111605 111505 (rev) 82.72 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + A A++A+AA+A+ A+:AC:CAUAUAAU::CG:G+AUAUGGC:CG::AGUUUCUACC:G 89771 UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGG 89830 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CA CCGUAAA UG:C:GACUAUG:GU:A + U A + 89831 GCA-CCGUAAA-UGUCCGACUAUGGGUGAGCAAUGGAACCGCA 89871 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42400,sp|Z99123.2|BSUB0020 Bacillus subtilis complete genome (section 20 of 21): from 3809641 to 4010779. ----isReversed: 0 ----hitSequence: CAUCUUAGAAAAAGACAUUCUUGUAUAUGAUCAGUAAUAUGGUCUGAUUGUUUCUACCUAGUAACCGUAAAAAACUAGACUACAAGAAAGUUUGAAUAAAUUU hit 79 : 194901 195003 (fwd) 88.63 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A+ +UA AAAAA+A +:+CU::UAUA+: :C:G:AAUAUGG:C:G: :GUUUCUACC:: 194901 CAUCUUAGAAAAAGACAUUCUUGUAUAUGAUCAGUAAUAUGGUCUGAUUGUUUCUACCUA 194960 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 G:+:CCGUAAA:+:C::GACUA::AG+:A UUU+A++ A UUU 194961 GUAACCGUAAAAAACUAGACUACAAGAAAGUUUGAAUAAAUUU 195003 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42420,sp|X83878.1|BSXPTPBUX B.subtilis xpt and pbuX genes ----isReversed: 0 ----hitSequence: UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGGUGAGCAAUGGAACCGCA hit 80 : 168 268 (fwd) 82.72 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + A A++A+AA+A+ A+:AC:CAUAUAAU::CG:G+AUAUGGC:CG::AGUUUCUACC:G 168 UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGG 227 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CA CCGUAAA UG:C:GACUAUG:GU:A + U A + 228 GCA-CCGUAAA-UGUCCGACUAUGGGUGAGCAAUGGAACCGCA 268 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42494,sp|L77246.1|BSYACA Bacillus subtilis (YAC10-9 clone) DNA region between the serA and kdg loci. ----isReversed: 0 ----hitSequence: UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGGUGAGCAAUGGAACCGCA hit 81 : 1237 1337 (fwd) 82.72 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + A A++A+AA+A+ A+:AC:CAUAUAAU::CG:G+AUAUGGC:CG::AGUUUCUACC:G 1237 UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGG 1296 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CA CCGUAAA UG:C:GACUAUG:GU:A + U A + 1297 GCA-CCGUAAA-UGUCCGACUAUGGGUGAGCAAUGGAACCGCA 1337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #26976,sp|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6 ----isReversed: 1 ----hitSequence: CAAUUAAAUAUAUGAUUUACUUAUUUAUGCUGAGGAUUGGCUUAGCGUCUCUACAAGACACCGUAAUGUCUAACAAUAAGUAAGCUAAUAAAUAGCU hit 82 : 211490 211394 (rev) 68.13 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AA+++AA+A+A++A+U:ACU:AU+UA+ +C:::G+AU UGGC:::G +GU+UCUAC:AG 21561 CAAUUAAAUAUAUGAUUUACUUAUUUAU-GCUGAGGAU-UGGCUUAG-CGUCUCUACAAG 21617 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :CA CCGU AA UG:CU:AC+AU:AGU:A U ++A + +U 21618 ACA-CCGU-AA-UGUCUAACAAUAAGUAAGCUAAUAAAUAGCU 21657 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24292,sp|AL929229.6|AL929229 Zebrafish DNA sequence from clone CH211-1E14 in linkage group 18 ----isReversed: 0 ----hitSequence: AAAAAUCAUAUAAUUUAUUUUUAUAUAUAUUAUAUAAUAUUAUUUAUUUCUACUACUUACCUUUAAAUGAAUAAAUUAAACAUAGUAAUAAAUAAUAUA hit 83 : 58723 58821 (fwd) 25.18 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAAAAU A+A+AA +++: : : UAUA+::: :::AAUA ::: ::: UUUCUAC :: 58723 AAAAAUCAUAUAAUUUAUUUUUAUAUAUAUUAUAUAAUA---UUAUUUA-UUUCUAC-UA 58777 <<<<____.___>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGU.AAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :+ACC U AAAU+: ::+A UA : : : + +U A++ AU U 58778 CUUACCUUuAAAUGAAUAAAUUAAACAUAGUAAUAAAUAAUAUA 58821 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2308,sp|AC008649.8|AC008649 Homo sapiens chromosome 19 clone CTB-186G2, complete sequence. ----isReversed: 1 ----hitSequence: AAAUAUAUAUAUAUAAAAAUAUAUAUAAAUAUAUAAAUAUAUAUAAGUAUAUAUAAAUAUAUAAAUAUAUAAAUAUAUAUAAUAUAUAUAAAUAUA hit 84 : 89622 89527 (rev) 25.33 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAA+AUA+A+A+A AA+AA: :AUAUAA:: ::: AAUAU ::: ::GU U UA : : 37061 AAAUAUAUAUAUAUAAAAAUAUAUAUAAAUAUAUAAAUAU---AUAUAAGUAUAUAUAAA 37117 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::+A UAAAU+::: :A UAU: :UAA+ U UAUA AU U 37118 UAUA---UAAAUAUAUAAA-UAUAUAUAAUAUAUAUAAAUAUA 37156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3179,sp|AC010284.4|AC010284 Homo sapiens chromosome 5 clone CTC-558E23, complete sequence. ----isReversed: 0 ----hitSequence: AAAUAUAAAAAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAUAUAAAUCUAUACAAAUAUAUAAAUAUAUAUAAUAUAUAAAUAUAUAAAUAUAUAU hit 85 : 10582 10678 (fwd) 27.20 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAA+AUAAAAA+A A++A+: :AUAUAA:: ::: AAUAU ::: :: U+U UAC: : 10582 AAAUAUAAAAAUAUAUAAAUAUAUAUAAAUAUAUAAAUAU---AUAUAAAUCUAUACAAA 10638 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::+A UAAAU+::: :A UAU: :+A AU+U A++ + U U 10639 UAUA---UAAAUAUAUAUAAUAUAUAAAUAUAUAAAUAUAUAU 10678 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3485,sp|AC010792.4|AC010792 Homo sapiens chromosome 17, clone -2524N8, complete sequence. ----isReversed: 1 ----hitSequence: UAUAUAUUAUAAUAUAUAAUAUAUAUAAUAUAUAUAAUAUAUUAGAUAUAUAAUAUAUACAAUAUAUUAUAUAUAUAAAUAUAUAUAAUAUAUAACAUAUAU hit 86 : 13113 13012 (rev) 25.20 bits :::::::::::::::::((((((((,,,<<<<<<<______...._>>>>>>>,,,,,,, 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUG....GcccgggaGUUUCUA 56 +A+A++++A+AA+A+AUAA: :AUAUAAU : ::+AAUAU G+:: : A U U UA 104294 UAUAUAUUAUAAUAUAUAAUAUAUAUAAUAUAUAUAAUAU-auuaGAUAUAUAAUAUAUA 104352 ,<<<<<<<_______>>>>>>>,,))))))))::::::::::::::: 57 CCaGgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 C:A:::A UA A U:::U:A UAU: :UAA+ U UA+ + U U 104353 CAAUAUA---UUAUA-UAUAUAAAUAUAUAUAAUAUAUAACAUAUAU 104395 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5723,sp|AC022144.8|AC022144 Homo sapiens chromosome 19 clone CTD-2540F13, complete sequence. ----isReversed: 0 ----hitSequence: AAAUAUAUAUAUAUAAAAAUAUAUAUAAAUAUAUAAAUAUAUAUAAGUAUAUAUAAAUAUAUAAAUAUAUAAAUAUAUAUAAUAUAUAUAAAUAUA hit 87 : 131510 131605 (fwd) 25.33 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAA+AUA+A+A+A AA+AA: :AUAUAA:: ::: AAUAU ::: ::GU U UA : : 131510 AAAUAUAUAUAUAUAAAAAUAUAUAUAAAUAUAUAAAUAU---AUAUAAGUAUAUAUAAA 131566 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::+A UAAAU+::: :A UAU: :UAA+ U UAUA AU U 131567 UAUA---UAAAUAUAUAAA-UAUAUAUAAUAUAUAUAAAUAUA 131605 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8613,sp|AC078833.5|AC078833 Homo sapiens chromosome 7 clone RP11-266A11, complete sequence. ----isReversed: 1 ----hitSequence: UAUAAUAUUAUAUAAUAUUAUUAUAUAAUAAUAUUAUAUAUGGUAUAUAUUAUACCUUAAACCUUAUAUAUAAUAUUAUUAUAUAAUAUUAUUAUAUAA hit 88 : 19225 19127 (rev) 26.39 bits :::::::::::::::::((((((((,,,<<<<<<<_.______>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggA.AUAUGGcccgggaGUUUCUACCa 59 +A+AAUA++A+A+AA++ + U:AUAUAAU ::::A AUAUGG:::: A UU UAC : 124723 UAUAAUAUUAUAUAAUAUUAUUAUAUAAUAAUAUUAuAUAUGGUAUA-UA--UUAUACCU 124779 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :: A CC UA A U ::: A UAU:A + AAU+UUAU+ + U 124780 UAAA-CCUUAUA-UAUAAUAUUAUUAUAUAAUAUUAUUAUAUAA 124821 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #180,sp|AC091628.2|AC091628 Homo sapiens chromosome 17 map 17q21.1, complete sequence. ----isReversed: 1 ----hitSequence: UAUAUAUUAUAAUAUAUAAUAUAUAUAAUAUAUAUAAUAUAUUAGAUAUAUAAUAUAUACAAUAUAUUAUAUAUAUAAAUAUAUAUAAUAUAUAACAUAUAU hit 89 : 17585 17484 (rev) 25.20 bits :::::::::::::::::((((((((,,,<<<<<<<______...._>>>>>>>,,,,,,, 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUG....GcccgggaGUUUCUA 56 +A+A++++A+AA+A+AUAA: :AUAUAAU : ::+AAUAU G+:: : A U U UA 183813 UAUAUAUUAUAAUAUAUAAUAUAUAUAAUAUAUAUAAUAU-auuaGAUAUAUAAUAUAUA 183871 ,<<<<<<<_______>>>>>>>,,))))))))::::::::::::::: 57 CCaGgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 C:A:::A UA A U:::U:A UAU: :UAA+ U UA+ + U U 183872 CAAUAUA---UUAUA-UAUAUAAAUAUAUAUAAUAUAUAACAUAUAU 183914 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #315,sp|AC091925.3|AC091925 Homo sapiens chromosome 5 clone RP11-278J6, complete sequence. ----isReversed: 0 ----hitSequence: AAAUAUAAAAAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAUAUAAAUCUAUACAAAUAUAUAAAUAUAUAUAAUAUAUAAAUAUAUAAAUAUAUAU hit 90 : 162685 162781 (fwd) 27.20 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 AAA+AUAAAAA+A A++A+: :AUAUAA:: ::: AAUAU ::: :: U+U UAC: : 162685 AAAUAUAAAAAUAUAUAAAUAUAUAUAAAUAUAUAAAUAU---AUAUAAAUCUAUACAAA 162741 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::+A UAAAU+::: :A UAU: :+A AU+U A++ + U U 162742 UAUA---UAAAUAUAUAUAAUAUAUAAAUAUAUAAAUAUAUAU 162781 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1080,sp|AC093112.4|AC093112 Homo sapiens BAC clone RP11-621K10 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UAUAUAAAUAUAUUAUAUAUUUAUAUAUAAAUAUAUAAUAUGAAUAUAUAUAUUAUAUAUAAAUAUAUUAUAUAUUUAUAUAUAAAUAUAUUAUAUAUUUAUA hit 91 : 33032 32930 (rev) 25.37 bits :::::::::::::::::((((((((,,,.<<<<<<<_______>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAA.ucccgggAAUAUGGcccgggaGUUUCUACCa 59 +A+A++AA+A+A+ A++:A:U:AUAUA+ : : ::+AAUAUG +:: : : UU UA :: 26383 UAUAUAAAUAUAUUAUAUAUUUAUAUAUaAAUAUAUAAUAUGAAUAUAUAUAUUAUAUAU 26442 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :::+A UA AU+:::::A UAU:A:U: AUU UAUAU+U U 26443 AAAUAUAUUAUAUAUUUAUA-UAUAAAUAUAUUAUAUAUUUAUA 26485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1537,sp|AC093840.4|AC093840 Homo sapiens BAC clone RP11-433O3 from 4, complete sequence. ----isReversed: 0 ----hitSequence: AUAUAUUAUAUAUAUAAUAUAUAUAUAAUAUAUGUAAUAUGCAAUAUAUAUUUUAUUAUAUAAUAAUAAAUUAUAUAUUAUAUAUAAAUAAUAUAUAAUAU hit 92 : 67964 68064 (fwd) 28.12 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 A A+AU+A+A+A+A+A+:A: :AUAUAAU : ::+AAUAUG +:: : A UUU U A 67964 AUAUAUUAUAUAUAUAAUAUAUAUAUAAUAUAUGUAAUAUGCaAUAUAUAUUUUAU--UA 68021 <<<<<_______>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 :::AA UAAAUU:::U A UAU: :U:AAU+ UAUAUA U U 68022 UAUAAUAAUAAAUUAUAU-AUUAUAUAUAAAUAAUAUAUAAUAU 68064 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4096,sp|AC109360.3|AC109360 Homo sapiens BAC clone RP11-685O6 from 4, complete sequence. ----isReversed: 0 ----hitSequence: UUAUAUAUAUUUUUAUUUCUAGAUAUAUAUUAUAUAAUAUGAUAUAUAAAUAUAUACAAUAUACAUUUAUAAAUAUAUAAAUAUAUAUAAAUAUAUACUAUAUA hit 93 : 12947 13050 (fwd) 25.15 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 + A+AUA+A++++ A+U: : AUAUA+:::: :AAUAUG : :::: U U UAC:A: 12947 UUAUAUAUAUUUUUAUUUCUAGAUAUAUAUUAUAUAAUAUGAUAUAUAAAUAUAUACAAU 13006 <<<<____...___>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGU...AAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 ::A C U AAA U:::U:A UAU : :AAU+U ++ UAU U 13007 AUA-CAUUuauAAA-UAUAUAAAUAUAUAUAAAUAUAUACUAUAUA 13050 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6566,sp|AC136488.3|AC136488 Homo sapiens chromosome X clone RP13-886N14, complete sequence. ----isReversed: 1 ----hitSequence: AUAUAUUAAUAAAUAUAUAAAUAUAUAUAUUAAUAAAUAUAUAUAUAAAUAUGUACAUAUAUGUAAAUAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAU hit 94 : 141163 141064 (rev) 25.99 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 A A+AU+AA+AAA A++:A :AUAUA+:::::::AAUAU ::::::: U U UAC A 22673 AUAUAUUAAUAAAUAUAUAAAUAUAUAUAUUAAUAAAUAU--aUAUAUAAAUAUGUAC-A 22729 <<<<<_______.>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAA.uugcCuGACUAuGAguaAauuuuauaUauuuu 103 :::A GUAAA U:::U+A UAU: U:AAU+U ++A + U U 22730 UAUAU--GUAAAuAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAU 22772 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6567,sp|AC136489.3|AC136489 Homo sapiens chromosome X clone RP13-749I18 map Xp11.3 complete sequence. ----isReversed: 1 ----hitSequence: AUAUAUUAAUAAAUAUAUAAAUAUAUAUAUUAAUAAAUAUAUAUAUAAAUAUGUACAUAUAUGUAAAUAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAU hit 95 : 42575 42476 (rev) 25.99 bits :::::::::::::::::((((((((,,,<<<<<<<_______.>>>>>>>,,,,,,,,<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGG.cccgggaGUUUCUACCa 59 A A+AU+AA+AAA A++:A :AUAUA+:::::::AAUAU ::::::: U U UAC A 121894 AUAUAUUAAUAAAUAUAUAAAUAUAUAUAUUAAUAAAUAU--aUAUAUAAAUAUGUAC-A 121950 <<<<<_______.>>>>>>>,,))))))))::::::::::::::: 60 GgcaaCCGUAAA.uugcCuGACUAuGAguaAauuuuauaUauuuu 103 :::A GUAAA U:::U+A UAU: U:AAU+U ++A + U U 121951 UAUAU--GUAAAuAUAUAUAAAUAUAUAUAAAUAUAUAAAUAUAU 121993 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3311,sp|AL391987.15|AL391987 Human DNA sequence from clone RP11-374M1 on chromosome 9 ----isReversed: 0 ----hitSequence: AUUAUGUUUUUAAUAUAUUUUAAUAUAAUUUGAAAAUAUUGUUUUAAAAUUACAUCUAUGUUCCAUAAAUAAAUAAAUAUGUAAAAAUAAUAAAUGUUUG hit 96 : 99210 99309 (fwd) 26.49 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A +A+ +++++AA A++:+: :AUAUAAU:: ::AAUAU G::+ ::A UU C C:A: 99210 AUUAUGUUUUUAAUAUAUUUUAAUAUAAUUUG-AAAAUAUUGUUUUAAAAUUACAUCUAU 99268 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 : CC UAAA : :U:A UAU: :+:AAU+ UA+AU UUU 99269 GUU-CCAUAAA-UAAAUAAAUAUGUAAAAAUAAUAAAUGUUUG 99309 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #5372,sp|AL627230.15|AL627230 Human DNA sequence from clone RP11-12A20 on chromosome 9 ----isReversed: 0 ----hitSequence: AUUAUGUUUUUAAUAUAUUUUAAUAUAAUUUGAAAAUAUUGUUUUAAAAUUACAUCUAUGUUCCAUAAAUAAAUAAAUAUGUAAAAAUAAUAAAUGUUUG hit 97 : 34680 34779 (fwd) 26.49 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 A +A+ +++++AA A++:+: :AUAUAAU:: ::AAUAU G::+ ::A UU C C:A: 34680 AUUAUGUUUUUAAUAUAUUUUAAUAUAAUUUG-AAAAUAUUGUUUUAAAAUUACAUCUAU 34738 <<<<_______>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAAuugcCuGACUAuGAguaAauuuuauaUauuuu 103 : CC UAAA : :U:A UAU: :+:AAU+ UA+AU UUU 34739 GUU-CCAUAAA-UAAAUAAAUAUGUAAAAAUAAUAAAUGUUUG 34779 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6858,sp|AP001138.3|AP001138 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, LL56-APP region, clone:B880L11, complete sequence. ----isReversed: 1 ----hitSequence: UAUAUGUAAAAUAUUAUUACAUAUAUAUCUCUAUAUAUAGAUAUAUAUAUCUCUACAUAUACACGUAAAAUAUUAUAUAUUAUAUAUAACAUAUUAUAUAUUU hit 98 : 146063 145961 (rev) 26.57 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +A+A+ +AAAA+A +AU:A: :AUAUA+ : :::: AU G :::: : U+UCUAC::: 17907 UAUAUGUAAAAUAUUAUUACAUAUAUAUCUCUAUAUAU-AGAUAUAUAUAUCUCUACAUA 17965 <<<<_______..>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAA..uugcCuGACUAuGAguaAauuuuauaUauuuu 103 :: : CGUAAA : :::::A UAU: :U:A U U+++ + UUU 17966 UACA-CGUAAAauAUUAUAUAUUAUAUAUAACAUAUUAUAUAUUU 18009 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7118,sp|AP001680.1|AP001680 Homo sapiens genomic DNA, chromosome 21q, section 24/105. ----isReversed: 1 ----hitSequence: UAUAUGUAAAAUAUUAUUACAUAUAUAUCUCUAUAUAUAGAUAUAUAUAUCUCUACAUAUACACGUAAAAUAUUAUAUAUUAUAUAUAACAUAUUAUAUAUUU hit 99 : 280698 280596 (rev) 26.57 bits :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<< 1 aAAaauaAAaAAAaAauaacUCaUAUAAucccgggAAUAUGGcccgggaGUUUCUACCaG 60 +A+A+ +AAAA+A +AU:A: :AUAUA+ : :::: AU G :::: : U+UCUAC::: 59303 UAUAUGUAAAAUAUUAUUACAUAUAUAUCUCUAUAUAU-AGAUAUAUAUAUCUCUACAUA 59361 <<<<_______..>>>>>>>,,))))))))::::::::::::::: 61 gcaaCCGUAAA..uugcCuGACUAuGAguaAauuuuauaUauuuu 103 :: : CGUAAA : :::::A UAU: :U:A U U+++ + UUU 59362 UACA-CGUAAAauAUUAUAUAUUAUAUAUAACAUAUUAUAUAUUU 59405 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=0.00422857, 2d-fracLetsThru=0.00224784). Filter report: done 1.65905e+10 nucs (frac lets thru so far=0.0327931, 2d-fracLetsThru=0.0183668). Filter report: done 5.44055e+08 nucs (frac lets thru so far=0.128947, 2d-fracLetsThru=0.122386). done 1.65905e+10 nucs (frac lets thru so far=0.00422857, 2d-fracLetsThru=0.00224784). CPU time: 477234.98u 1557.99s 132:59:52.96 Elapsed: 136:42:04