Params: ./cmzasha --no-stderr --filter 70 40 Rfam/cm/RF00164.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00164_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: boudin.cs.washington.edu pid: 31433 ----cmFile: Rfam/cm/RF00164.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #1777,sp|AB013618.2|AB013618 Human astrovirus gene for capsid protein precursor, complete cds. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 0 : 2444 2486 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 2444 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 2486 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #3943,sp|AB031030.1|AB031030 Human astrovirus gene for capsid protein, complete cds, strain:katano24. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 1 : 2444 2486 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 2444 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 2486 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #3944,sp|AB031031.1|AB031031 Human astrovirus gene for capsid protein, complete cds, strain:Katano23-6. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 2 : 2314 2356 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 2314 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 2356 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #4388,sp|AB033998.1|AB033998 Avian nephritis virus gene for structural polyprotein, non-structural polyprotein, complete cds. ----isReversed: 0 ----hitSequence: CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAAG hit 3 : 6702 6744 (fwd) 53.24 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 : :U:CCGAGGCCACG+CGAGUAG+AUCGAGGGUACAG:A: : 6702 CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAAG 6744 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #5169,sp|AB037272.1|AB037272 Porcine astrovirus gene for capsid protein precursor, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGAGGCCACGCCGAGUAGGAACGAGGGUACAGCUUUC hit 4 : 2612 2654 (fwd) 57.67 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 GAA:GCCGAGGCCACGCCGAGUAGGA CGAGGGUACAGC:UUC 2612 GAAAGCCGAGGCCACGCCGAGUAGGAACGAGGGUACAGCUUUC 2654 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #5170,sp|AB037273.1|AB037273 Human astrovirus type 5 gene for capsid protein precursor, complete cds, strain:CHN146. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 5 : 2393 2435 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 2393 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 2435 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #5171,sp|AB037274.1|AB037274 Human astrovirus type 5 gene for capsid protein precursor, complete cds, strain:CHN198. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 6 : 2632 2674 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 2632 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 2674 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #6181,sp|AB046864.1|AB046864 Avian nephritis virus ORF 2 gene for virus capsid polyprotein, complete cds. ----isReversed: 0 ----hitSequence: CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAUG hit 7 : 2311 2353 (fwd) 53.24 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 : :U:CCGAGGCCACG+CGAGUAG+AUCGAGGGUACAG:A: : 2311 CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAUG 2353 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #21789,sp|AF056197.1|AF056197 Feline astrovirus capsid precursor protein mRNA, complete cds. ----isReversed: 0 ----hitSequence: GAGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCUC hit 8 : 2428 2470 (fwd) 60.14 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 GA::GCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGC::UC 2428 GAGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCUC 2470 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #31409,sp|AF111995.1|AF111995 Turkey coronavirus strain Indiana nucleocapsid protein gene, complete cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGCGUACGAUCGUGGGUACAGCACUA hit 9 : 1596 1638 (fwd) 50.83 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:G GUA:GAUCG GGGUACAGCA:U: 1596 CAGUGCCGGGGCCACGCGGCGUACGAUCGUGGGUACAGCACUA 1638 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #31410,sp|AF111996.1|AF111996 Turkey coronavirus strain Minnesota nucleocapsid protein gene, complete cds. ----isReversed: 0 ----hitSequence: CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 10 : 1596 1638 (fwd) 59.11 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCGAGGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 1596 CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 1638 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #31411,sp|AF111997.1|AF111997 Turkey coronavirus strain NC95 nucleocapsid protein gene, complete cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA hit 11 : 1443 1485 (fwd) 54.97 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 : :UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA: : 1443 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA 1485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #31998,sp|AF117209.1|AF117209 Human astrovirus type 3 capsid protein precursor, gene, complete cds. ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 12 : 2373 2415 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 2373 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 2415 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #36072,sp|AF141381.1|AF141381 Human astrovirus putative serine protease gene, complete cds; putative RNA-dependent RNA polymerase gene, partial cds; and caps ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 13 : 6710 6752 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 6710 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 6752 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #45311,sp|AF203002.1|AF203002 Avian infectious bronchitis virus strain DE072 3' noncoding region. ----isReversed: 0 ----hitSequence: CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 14 : 370 412 (fwd) 59.11 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCGAGGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 370 CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 412 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #45316,sp|AF203007.1|AF203007 Avian infectious bronchitis virus strain D1466 3' noncoding region. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 15 : 392 434 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 392 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #52651,sp|AF248738.2|AF248738 Human astrovirus type 7 ORF1b gene, partial cds; and capsid protein precursor, gene, complete cds. ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 16 : 2981 3023 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 2981 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 3023 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #54168,sp|AF257226.1|AF257226 Human astrovirus type 2 M358 capsid precursor protein gene, partial cds. ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 17 : 425 467 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 425 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 467 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #54541,sp|AF260508.1|AF260508 Human astrovirus type 8, complete genome. ----isReversed: 0 ----hitSequence: GGAAGCCGCGACCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 18 : 6651 6693 (fwd) 54.95 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG G CCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 6651 GGAAGCCGCGACCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 6693 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #62856,sp|AF322368.2|AF322368 Avian infectious bronchitis virus strain D41 3' noncoding region. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 19 : 392 434 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 392 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #68160,sp|AF361253.1|AF361253 Equine rhinovirus 3 strain P313/75, complete genome. ----isReversed: 0 ----hitSequence: ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU hit 20 : 8721 8763 (fwd) 54.56 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::GCCGAGGCCACGCCGAGUAGGA CGAGGGUACAGC:::: 8721 ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU 8763 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #74088,sp|AF395733.1|AF395733 Human astrovirus type 1 strain HUN-1b capsid protein precursor, gene, partial cds. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 21 : 1118 1160 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 1118 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 1160 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #74089,sp|AF395734.1|AF395734 Human astrovirus type 1 strain HUN-1a capsid protein precursor, gene, partial cds. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC hit 22 : 1118 1160 (fwd) 56.07 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGA CGAGGGUACAGC:U:C 1118 GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC 1160 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #74090,sp|AF395735.1|AF395735 Human astrovirus type 3 strain HUN-3 capsid protein precursor, gene, partial cds. ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 23 : 1133 1175 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 1133 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 1175 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #74092,sp|AF395737.1|AF395737 Human astrovirus type 5 strain HUN-5 capsid protein precursor, gene, partial cds. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 24 : 1109 1151 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 1109 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 1151 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #74093,sp|AF395738.1|AF395738 Human astrovirus type 8 strain HUN-8 capsid protein precursor, gene, partial cds. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 25 : 1103 1145 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 1103 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 1145 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98350,sp|U04804.1|AI04804 Avian infectious bronchitis virus 3' noncoding region. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 26 : 368 410 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 368 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98381,sp|Z30541.1|AIBVCG Avian infectious bronchitis virus mRNA for chimeric gene ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 27 : 8944 8986 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 8944 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 8986 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98384,sp|AJ278334.1|AIN278334 Avian infectious bronchitis virus, strain UK/918/68, 3'UTR ----isReversed: 0 ----hitSequence: CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 28 : 373 415 (fwd) 59.11 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCGAGGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 373 CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 415 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98385,sp|AJ278335.1|AIN278335 Avian infectious bronchitis virus, strain D207, 3' UTR ----isReversed: 0 ----hitSequence: CAGUGCCAGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 29 : 370 412 (fwd) 54.34 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCC GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 370 CAGUGCCAGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 412 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98386,sp|AJ278336.1|AIN278336 Avian infectious bronchitis virus, strain H120, 3' UTR ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 30 : 395 437 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 395 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 437 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98387,sp|AJ278337.1|AIN278337 Avian infectious bronchitis virus, strain HV10, 3' UTR ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 31 : 374 416 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 374 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 416 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98388,sp|AJ278338.1|AIN278338 Avian infectious bronchitis virus, strain HVI-140, 3' UTR ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 32 : 374 416 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 374 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 416 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98435,sp|U49858.1|AIU49858 Avian infectious bronchitis virus strain CU-T2 spike protein (gene 2), gene 3, membrane protein (gene 4), gene 5, nucleocapsid ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 33 : 7267 7309 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 7267 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 7309 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98436,sp|U52594.1|AIU52594 Avian infectious bronchitis virus Vic S nucleocapsid protein mRNA, complete cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUU hit 34 : 1540 1582 (fwd) 55.80 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U 1540 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUU 1582 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98437,sp|U52595.1|AIU52595 Avian infectious bronchitis virus V5/90 nucleocapsid protein mRNA, partial cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUU hit 35 : 1520 1562 (fwd) 55.80 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U 1520 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUU 1562 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98438,sp|U52596.1|AIU52596 Avian infectious bronchitis virus N1/62 nucleocapsid protein mRNA, partial cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 36 : 1581 1623 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 1581 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 1623 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98439,sp|U52597.1|AIU52597 Avian infectious bronchitis virus N9/74 nucleocapsid protein mRNA, partial cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 37 : 1581 1623 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 1581 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 1623 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98440,sp|U52598.1|AIU52598 Avian infectious bronchitis virus N2/75 nucleocapsid protein mRNA, partial cds. ----isReversed: 0 ----hitSequence: CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 38 : 1583 1625 (fwd) 59.11 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCGAGGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 1583 CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 1625 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98441,sp|U52599.1|AIU52599 Avian infectious bronchitis virus N1/88 nucleocapsid protein mRNA, complete cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 39 : 1405 1447 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 1405 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 1447 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98442,sp|U52600.1|AIU52600 Avian infectious bronchitis virus Q3/88 nucleocapsid protein mRNA, complete cds. ----isReversed: 0 ----hitSequence: CAGUGCCGAGGCCACUCGGAGUACGAUCGAGGGUACAGCACUA hit 40 : 1419 1461 (fwd) 55.17 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCGAGGCCAC:C:GAGUA:GAU:GAGGGUACAGCA:U: 1419 CAGUGCCGAGGCCACUCGGAGUACGAUCGAGGGUACAGCACUA 1461 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98443,sp|U52601.1|AIU52601 Avian infectious bronchitis virus V18/91 nucleocapsid protein mRNA, complete cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 41 : 1396 1438 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 1396 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 1438 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98684,sp|AP006557.1|AP006557 SARS coronavirus TWH genomic RNA, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 42 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98685,sp|AP006558.1|AP006558 SARS coronavirus TWJ genomic RNA, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 43 : 29582 29624 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29582 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29624 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98686,sp|AP006559.1|AP006559 SARS coronavirus TWK genomic RNA, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 44 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98687,sp|AP006560.1|AP006560 SARS coronavirus TWS genomic RNA, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 45 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98688,sp|AP006561.1|AP006561 SARS coronavirus TWY genomic RNA, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 46 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #108696,sp|AY044186.1|AY044186 Avian infectious bronchitis virus mRNA, 3'UTR. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCUGAGUACGACCGAGGGUACAGCACUA hit 47 : 184 226 (fwd) 53.97 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GA CGAGGGUACAGCA:U: 184 CAGUGCCGGGGCCACGCUGAGUACGACCGAGGGUACAGCACUA 226 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #120517,sp|AY179509.1|AY179509 Mink astrovirus, complete genome. ----isReversed: 0 ----hitSequence: ACUACCCGAGGCCACGCCGAGUUAGGAUCGAGGGUACAGGUAGU hit 48 : 6505 6548 (fwd) 49.18 bits <<<<<<-----<<-<<<<___.__>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAG.UAgGAUCGAGGGUACAGcauuc 43 :::::CCGAGGCCACGCCGAG UAGGAUCGAGGGUACAG::::: 6505 ACUACCCGAGGCCACGCCGAGuUAGGAUCGAGGGUACAGGUAGU 6548 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #130501,sp|AY274119.3|AY274119 SARS coronavirus TOR2, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 49 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #130717,sp|AY278487.3|AY278487 SARS coronavirus BJ02, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 50 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #130718,sp|AY278488.2|AY278488 SARS coronavirus BJ01, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 51 : 29565 29607 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29565 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29607 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #130719,sp|AY278489.2|AY278489 SARS coronavirus GD01, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 52 : 29597 29639 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29597 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29639 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #130720,sp|AY278490.3|AY278490 SARS coronavirus BJ03, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 53 : 29580 29622 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29580 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29622 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #130721,sp|AY278491.2|AY278491 SARS coronavirus HKU-39849, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 54 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #130727,sp|AY278554.2|AY278554 SARS coronavirus CUHK-W1, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 55 : 29569 29611 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29569 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29611 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #130730,sp|AY278741.1|AY278741 SARS coronavirus Urbani, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 56 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #130736,sp|AY279354.2|AY279354 SARS coronavirus BJ04, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 57 : 29568 29610 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29568 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29610 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131145,sp|AY282752.1|AY282752 SARS coronavirus CUHK-Su10, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 58 : 29569 29611 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29569 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29611 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131194,sp|AY283794.1|AY283794 SARS coronavirus Sin2500, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 59 : 29568 29610 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29568 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29610 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131195,sp|AY283795.1|AY283795 SARS coronavirus Sin2677, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 60 : 29562 29604 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29562 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29604 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131196,sp|AY283796.1|AY283796 SARS coronavirus Sin2679, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 61 : 29568 29610 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29568 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29610 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131197,sp|AY283797.1|AY283797 SARS coronavirus Sin2748, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 62 : 29563 29605 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29563 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29605 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131198,sp|AY283798.1|AY283798 SARS coronavirus Sin2774, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 63 : 29568 29610 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29568 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29610 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131610,sp|AY290752.1|AY290752 SARS coronavirus ZJ-HZ01 nucleocapsid protein, uncharacterized protein 9b, and uncharacterized protein 9c genes, complete cds. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 64 : 1539 1581 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 1539 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 1581 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131613,sp|AY291315.1|AY291315 SARS coronavirus Frankfurt 1, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 65 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131617,sp|AY291451.1|AY291451 SARS coronavirus TW1, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 66 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #131812,sp|AY297028.1|AY297028 SARS coronavirus ZJ01, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 67 : 29575 29617 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29575 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29617 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #133007,sp|AY310120.1|AY310120 SARS coronavirus strain FRA, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 68 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #133291,sp|AY319651.1|AY319651 Avian infectious bronchitis virus isolate BJ, complete genome. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 69 : 27580 27622 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 27580 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 27622 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #133312,sp|AY321118.1|AY321118 SARS coronavirus TWC, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 70 : 29582 29624 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29582 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29624 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #133385,sp|AY322208.1|AY322208 SARS coronavirus Shanhgai LY Orf7a gene, partial cds; and Orf7b, Orf8A, Orf8b, and nucleocapsid protein genes, complete cds. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 71 : 2219 2261 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 2219 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 2261 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #133420,sp|AY323977.2|AY323977 SARS coronavirus HSR 1, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 72 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #134652,sp|AY338174.1|AY338174 SARS coronavirus Taiwan TC1, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 73 : 29515 29557 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29515 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #134653,sp|AY338175.1|AY338175 SARS coronavirus Taiwan TC2, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 74 : 29515 29557 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29515 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #134732,sp|AY348314.1|AY348314 SARS coronavirus Taiwan TC3, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 75 : 29515 29557 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29515 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #134954,sp|AY351680.1|AY351680 SARS coronavirus ZMY 1, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 76 : 29604 29646 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29604 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29646 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #135140,sp|AY362698.1|AY362698 SARS coronavirus TWC2, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 77 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #135141,sp|AY362699.1|AY362699 SARS coronavirus TWC3, complete genome. ----isReversed: 0 ----hitSequence: UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU hit 78 : 29584 29626 (fwd) 44.63 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::CGAGGCCACGC:GAGUA:GAUCGAGGGUACA:::: 29584 UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU 29626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #138149,sp|M21515.1|CORIBASP Avian infectious bronchitis virus spike, membrane, and nucleocapsid protein genes, complete cds, and fusion (F2) polypeptide, 3 ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 79 : 8676 8718 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 8676 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 8718 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140483,sp|X96871.1|ERPROTYP2 Equine Rhinovirus type 2 genomic sequence ----isReversed: 0 ----hitSequence: ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU hit 80 : 8728 8770 (fwd) 54.56 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::::GCCGAGGCCACGCCGAGUAGGA CGAGGGUACAGC:::: 8728 ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU 8770 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143086,sp|Z11682.1|HA13TERM Human astrovirus type 1, 3' terminal sequence RNA ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC hit 81 : 931 973 (fwd) 56.07 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGA CGAGGGUACAGC:U:C 931 GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC 973 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143092,sp|U15136.1|HA15136 Human astrovirus type 5 major capsid protein precursor mRNA, complete cds. ----isReversed: 0 ----hitSequence: GAAGCCGCGCCCACGCCGAGUAGGAUCGAGGGUACAGUC hit 82 : 2344 2382 (fwd) 43.05 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 GA +GCCG G CCACGCCGAGUAGGAUCGAGGGUACAG UC 2344 GA-AGCCGCGCCCACGCCGAGUAGGAUCGAGGGUACAG---UC 2382 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143094,sp|Z25771.1|HA1CAPNS Human astrovirus type 1 genes for capsid protein and nonstructural protein ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC hit 83 : 6710 6752 (fwd) 56.07 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGA CGAGGGUACAGC:U:C 6710 GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC 6752 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143119,sp|Z33883.1|HA4VP13 Human astrovirus type 4 gene encoding structural polyprotein vp1-3 ----isReversed: 0 ----hitSequence: GGGAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC hit 84 : 2293 2335 (fwd) 58.54 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:::GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:::C 2293 GGGAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC 2335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143163,sp|AB005257.1|HAAB5257 Human astrovirus type 6 RNA for capsid protein, partial cds. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 85 : 253 295 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 253 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 295 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143240,sp|Y08627.1|HAS1CAP Human astrovirus type 1 gene encoding capsid protein precursor (partial) ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC hit 86 : 197 239 (fwd) 56.07 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGA CGAGGGUACAGC:U:C 197 GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC 239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143241,sp|Y08628.1|HAS2CAP Human astrovirus type 2 gene encoding capsid protein precursor (partial) ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 87 : 197 239 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 197 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143242,sp|Y08629.1|HAS3CAP Human astrovirus type 3 gene encoding capsid protein precursor (partial) ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 88 : 197 239 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 197 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143243,sp|Y08630.1|HAS4CAP Human astrovirus type 4 gene encoding capsid protein precursor (partial) ----isReversed: 0 ----hitSequence: GGGAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC hit 89 : 191 233 (fwd) 58.54 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:::GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:::C 191 GGGAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC 233 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143244,sp|Y08631.1|HAS5CAP Human astrovirus type 5 gene encoding capsid protein precursor (partial) ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 90 : 197 239 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 197 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143245,sp|Y08632.2|HAS7CAP Human astrovirus type 7 gene for capsid protein precursor ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 91 : 2379 2421 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 2379 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 2421 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143246,sp|Y08633.1|HASCAPU1 Human astrovirus gene encoding capsid protein precursor (partial), isolate GII33 ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 92 : 291 333 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 291 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143247,sp|Y08634.1|HASCAPU2 Human astrovirus gene encoding capsid protein precursor (partial), isolate B55 ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC hit 93 : 188 230 (fwd) 56.07 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGA CGAGGGUACAGC:U:C 188 GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC 230 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143248,sp|M87668.1|HAT3TERMS Human astrovirus type 1 RNA, 3' terminal sequence. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC hit 94 : 931 973 (fwd) 56.07 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGA CGAGGGUACAGC:U:C 931 GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC 973 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143309,sp|Z46658.1|HAV6ORF2 Human astrovirus type 6 gene for capsid polyprotein precursor. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 95 : 2314 2356 (fwd) 58.71 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 2314 GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 2356 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #143310,sp|Z66541.1|HAVCAPSP Human astrovirus type 8 orf2 gene for capsid protein ----isReversed: 0 ----hitSequence: GGAAGCCGCGACCACGCCGAGUAGGAUCGAGGGUACAGCUUCC hit 96 : 2326 2368 (fwd) 54.95 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG G CCACGCCGAGUAGGAUCGAGGGUACAGC:U:C 2326 GGAAGCCGCGACCACGCCGAGUAGGAUCGAGGGUACAGCUUCC 2368 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #178318,sp|L06802.1|HUACAPSID Human astrovirus capsid protein mRNA, complete cds. ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 97 : 2379 2421 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 2379 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 2421 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #178319,sp|L13745.1|HUANSSPS Human astrovirus serotype 2, complete sequence of genomic RNA. ----isReversed: 0 ----hitSequence: GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC hit 98 : 6692 6734 (fwd) 54.69 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A::CCG GGCCACGCCGAGUAGGAUCGAGGGUACAG::U:C 6692 GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC 6734 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #178325,sp|L23513.1|HUAPOLY6A Human astrovirus type 1 strain Oxford, complete genome. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC hit 99 : 6668 6710 (fwd) 56.07 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGA CGAGGGUACAGC:U:C 6668 GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC 6710 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #178941,sp|M28565.1|IBABEAU Avian infectious bronchitis virus (Beaudette) nucleocapsid protein genomic RNA, complete cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 100 : 1700 1742 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 1700 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 1742 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #178942,sp|M95169.1|IBACGB Avian infectious bronchitis virus pol protein, spike protein, small virion-associated protein, membrane protein, and nucleocaps ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 101 : 27471 27513 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 27471 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 27513 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #178945,sp|L06251.1|IBAHYPVA1 Avian infectious bronchitis virus hypervariable region - related RNA sequence. ----isReversed: 0 ----hitSequence: CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 102 : 371 413 (fwd) 59.11 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCGAGGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 371 CAGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 413 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #178946,sp|L06253.1|IBAHYPVA2 Avian infectious bronchitis virus hypervariable region - related RNA sequence. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 103 : 392 434 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 392 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #178947,sp|L06252.1|IBAHYPVAR Avian infectious bronchitis virus hypervariable region - related RNA sequence. ----isReversed: 0 ----hitSequence: CAGUGCCAGGGCCACGCGGAGUACGAUCGAGGGUACAGCACCA hit 104 : 368 410 (fwd) 51.49 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 : :UGCC GGCCACGC:GAGUA:GAUCGAGGGUACAGCA: : 368 CAGUGCCAGGGCCACGCGGAGUACGAUCGAGGGUACAGCACCA 410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #178957,sp|M28566.1|IBAMPUP Avian infectious bronchitis virus (M41) nucleocapsid protein genomic RNA, complete cds. ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGACCGAGGGUACAGCACUA hit 105 : 1515 1557 (fwd) 55.98 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GA CGAGGGUACAGCA:U: 1515 CAGUGCCGGGGCCACGCGGAGUACGACCGAGGGUACAGCACUA 1557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #179081,sp|AJ311317.1|IBR311317 Avian infectious bronchitis virus (strain Beaudette CK) complete genomic RNA ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 106 : 27471 27513 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 27471 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 27513 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #179082,sp|AJ311362.1|IBR311362 Avian infectious bronchitis virus (strain Beaudette US) s gene, 3a gene, 3b gene, 3c gene, m gene, 5a gene, 5b gene and n gene, ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 107 : 7164 7206 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 7164 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 7206 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #179128,sp|Z69629.1|IBVCD61 Infectious bronchitis virus RNA (defective RNA CD-61) ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA hit 108 : 5991 6033 (fwd) 57.82 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :A:UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA:U: 5991 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA 6033 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #183639,sp|Y15938.2|PACAPSID Porcine astrovirus gene for capsid protein precursor, genomic RNA ----isReversed: 0 ----hitSequence: GAAAGCCGAGGCCACGCCGAGUAGGAACGAGGGUACAGCUUUC hit 109 : 2354 2396 (fwd) 57.67 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 GAA:GCCGAGGCCACGCCGAGUAGGA CGAGGGUACAGC:UUC 2354 GAAAGCCGAGGCCACGCCGAGUAGGAACGAGGGUACAGCUUUC 2396 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #188771,sp|S47249.1|S47249 {astrovirus genome 3' end} [human astrovirus type 1, Genomic RNA, 118 nt]. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC hit 110 : 15 57 (fwd) 56.07 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGA CGAGGGUACAGC:U:C 15 GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC 57 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #189089,sp|S68561.1|S68561 non-structural protein, capsid protein [human astrovirus serotype 1, isolate A88/2, Newcastle, Genomic RNA, 2739 nt]. ----isReversed: 0 ----hitSequence: GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC hit 111 : 2636 2678 (fwd) 56.07 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 G:A:GCCG GGCCACGCCGAGUAGGA CGAGGGUACAGC:U:C 2636 GGAAGCCGCGGCCACGCCGAGUAGGAACGAGGGUACAGCUUCC 2678 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #189562,sp|Y15937.2|SACAPSID Sheep astrovirus, complete genome, genomic RNA ----isReversed: 0 ----hitSequence: CAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUG hit 112 : 6358 6400 (fwd) 58.92 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 :AAU:CCGAGGCCACGCCGAGUAGGAUCGAGGGUACAG:AUU: 6358 CAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUG 6400 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #192586,sp|Y15936.2|TACAPSID Turkey astrovirus, complete genome, genomic RNA ----isReversed: 0 ----hitSequence: UGAUGCCGAGGCCACGCCGGGUAGGAUCGAGGGUACAGCAUCG hit 113 : 6871 6913 (fwd) 56.60 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 ::AUGCCGAGGCCACGCCG GUAGGAUCGAGGGUACAGCAU:: 6871 UGAUGCCGAGGCCACGCCGGGUAGGAUCGAGGGUACAGCAUCG 6913 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #192676,sp|AJ310642.1|TCO310642 Turkey coronavirus genomic RNA, partial 3' UTR, strain turkey/UK/412/00 ----isReversed: 0 ----hitSequence: CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA hit 114 : 102 144 (fwd) 54.97 bits <<<<<<-----<<-<<<<_____>>-->>->>----->>>>>> 1 gaaugCCGAGGCCACGCcGAGUAgGAUCGAGGGUACAGcauuc 43 : :UGCCG GGCCACGC:GAGUA:GAUCGAGGGUACAGCA: : 102 CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA 144 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=5.83164e-07, 2d-fracLetsThru=3.44054e-07). Filter report: done 1.65905e+10 nucs (frac lets thru so far=5.83164e-07, 2d-fracLetsThru=3.44054e-07). done 1.65905e+10 nucs (frac lets thru so far=5.83164e-07, 2d-fracLetsThru=3.44054e-07). CPU time: 117019.01u 184.94s 32:33:23.94 Elapsed: 32:33:40