params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10954,AF036389.1,1,sp|AF036389.1|AF036389 Schistosoma haematobium clone Sh1 satellite sequence.,0,0,120,167,56.39,AUCCAGCUGACGAGUCCCAAACAGGACGAAACGCGCGUCAAACUGCAU,AF036389.1/120-167,120-167,0,47,AF036389.1/120-167
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10955,AF036390.1,1,sp|AF036390.1|AF036390 Schistosoma haematobium clone Sh2 satellite sequence.,0,1,118,165,42.56,AUCCAACUGACGAGUGCCCAAUAGGAGGAAACGCGCGUCAAACUGCAU,AF036390.1/118-165,118-165,0,47,AF036390.1/118-165
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10956,AF036391.1,1,sp|AF036391.1|AF036391 Schistosoma haematobium clone Sh4 satellite sequence.,0,2,121,168,47.96,AUCCAACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUCAAACUGCAU,AF036391.1/121-168,121-168,0,47,AF036391.1/121-168
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10957,AF036392.1,1,sp|AF036392.1|AF036392 Schistosoma haematobium clone Sh5 satellite sequence.,0,3,121,168,42.95,AUCCAACUGACGAGCGCCAAAUAGGAGGAAACGCGCGUCAAACUGCAU,AF036392.1/121-168,121-168,0,47,AF036392.1/121-168
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10958,AF036393.1,1,sp|AF036393.1|AF036393 Schistosoma haematobium clone Sh6 satellite sequence.,0,4,119,166,47.28,AUCCAGCUGACGAGUCCCAAACAGGACGAAACGAGAGUCAAACUGCAU,AF036393.1/119-166,119-166,0,47,AF036393.1/119-166
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10959,AF036394.1,1,sp|AF036394.1|AF036394 Schistosoma haematobium clone Sh7 satellite sequence.,0,5,118,165,46.68,AUCCAGCUGACGUGUCCCAAACAGCACGAAACGCGCGUCAAACUGCAU,AF036394.1/118-165,118-165,0,47,AF036394.1/118-165
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10960,AF036395.1,1,sp|AF036395.1|AF036395 Schistosoma haematobium clone Sh8 satellite sequence.,0,6,119,163,52.88,CCCUGGCUGACGAGUCCCAAACAGGACGAAACGCGCGUCCUGGAU,AF036395.1/119-163,119-163,0,44,AF036395.1/119-163
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10961,AF036396.1,1,sp|AF036396.1|AF036396 Schistosoma haematobium clone Sh9 satellite sequence.,0,7,121,168,43.34,AUCCAACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUCAAACUGCAG,AF036396.1/121-168,121-168,0,47,AF036396.1/121-168
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10962,AF036397.1,1,sp|AF036397.1|AF036397 Schistosoma haematobium clone Sh10 satellite sequence.,0,8,119,166,51.63,AUCCAGCUGACGAGUCCCAAACAGCACGAAACGCGCGUCAAACUGCAU,AF036397.1/119-166,119-166,0,47,AF036397.1/119-166
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10963,AF036398.1,1,sp|AF036398.1|AF036398 Schistosoma haematobium clone Sh12 satellite sequence.,0,9,58,102,47.50,AUCUUUCUGACGAGUUUCAAAUAGGACGAAACGCGUGUCAUGGAU,AF036398.1/58-102,58-102,0,44,AF036398.1/58-102
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10964,AF036399.1,1,sp|AF036399.1|AF036399 Schistosomatium douthitti clone Sd1 satellite sequence.,0,10,123,167,57.71,AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUCCUGGAU,AF036399.1/123-167 AF036404.1/122-166,123-167,0,44,AF036399.1/123-167
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10965,AF036400.1,1,sp|AF036400.1|AF036400 Schistosomatium douthitti clone Sd2 satellite sequence.,0,11,123,167,55.17,AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGUGCAUCCUGGAU,AF036400.1/123-167,123-167,0,44,AF036400.1/123-167
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10966,AF036401.1,1,sp|AF036401.1|AF036401 Schistosomatium douthitti clone Sd3 satellite sequence.,0,12,123,167,61.28,AUCCAGCUGACGAGUCCCAAAUAGGACGAAAUGCGCAUCCUGGAU,AF036401.1/123-167,123-167,0,44,AF036401.1/123-167
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10967,AF036402.1,1,sp|AF036402.1|AF036402 Schistosomatium douthitti clone Sd4 satellite sequence.,0,13,123,167,52.53,AUCCAGCUGACGAGUGCCAAAUACGACGAAAUGCGCAUCCUGGAU,AF036402.1/123-167,123-167,0,44,AF036402.1/123-167
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,10969,AF036404.1,1,sp|AF036404.1|AF036404 Schistosomatium douthitti clone Sd6 satellite sequence.,0,14,122,166,57.71,AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUCCUGGAU,AF036399.1/123-167 AF036404.1/122-166,122-166,0,44,AF036404.1/122-166
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11099,AF036739.1,1,sp|AF036739.1|AF036739 Schistosoma mansoni clone Sm1 satellite sequence.,0,15,118,162,65.54,AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUCCUGGAU,M27676.1/133-177 AF036742.1/118-162 AF036744.1/118-162 AF036739.1/118-162,118-162,0,44,AF036739.1/118-162
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11100,AF036740.1,1,sp|AF036740.1|AF036740 Schistosoma mansoni clone Sm3 satellite sequence.,0,16,117,159,44.94,AUCCAGCUCACGAGUCCCAAAUAGGACGAAACGCGUCCUCCAU,AF036740.1/117-159,117-159,0,42,AF036740.1/117-159
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11101,AF036741.1,1,sp|AF036741.1|AF036741 Schistosoma mansoni clone Sm4 satellite sequence.,0,17,118,165,44.94,AUCCAGCCGACGAGUCCCAAAUAAAACGAAACGCGCGUCAAAGUGGAU,AF036741.1/118-165,118-165,0,47,AF036741.1/118-165
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11102,AF036742.1,1,sp|AF036742.1|AF036742 Schistosoma mansoni clone Sm5 satellite sequence.,0,18,118,162,65.54,AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUCCUGGAU,M27676.1/133-177 AF036742.1/118-162 AF036744.1/118-162 AF036739.1/118-162,118-162,0,44,AF036742.1/118-162
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11103,AF036743.1,1,sp|AF036743.1|AF036743 Schistosoma mansoni clone Sm6 satellite sequence.,0,19,118,165,53.33,AUUCAGCUGACGAGUCCCAAAUAGGACGAAGUGACGCGCGUCCUGGAU,AF036743.1/118-165,118-165,0,47,AF036743.1/118-165
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11104,AF036744.1,1,sp|AF036744.1|AF036744 Schistosoma mansoni clone Sm7 satellite sequence.,0,20,118,162,65.54,AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUCCUGGAU,M27676.1/133-177 AF036742.1/118-162 AF036744.1/118-162 AF036739.1/118-162,118-162,0,44,AF036744.1/118-162
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11105,AF036745.1,1,sp|AF036745.1|AF036745 Schistosoma mansoni clone Sm8 satellite sequence.,0,21,119,163,48.34,AUCCAACUGACCAGUCGGAAAUAGGACGAAACGCGCGUCCAGGAU,AF036745.1/119-163,119-163,0,44,AF036745.1/119-163
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11106,AF036746.1,1,sp|AF036746.1|AF036746 Schistosoma mansoni clone Sm9 satellite sequence.,0,22,113,157,53.25,AUCCAGCUGACCAGUCGGAAAUAGGACGAAACGCGCGUCCUGGAU,AF036746.1/113-157,113-157,0,44,AF036746.1/113-157
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11107,AF036747.1,1,sp|AF036747.1|AF036747 Schistosoma mansoni clone Sm10 satellite sequence.,0,23,117,160,55.01,AUCCAGCUGACGAGUCCCAAAUAGGCGAAACGCGCGUCCUGGAU,AF036747.1/117-160,117-160,0,43,AF036747.1/117-160
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11108,AF036748.1,1,sp|AF036748.1|AF036748 Schistosoma mansoni clone Sm12 satellite sequence.,0,24,120,164,54.24,AUCCAGCUGACGAGUCCUAAAUAGGGUGAAACGCGCGUCCUGGAU,AF036748.1/120-164,120-164,0,44,AF036748.1/120-164
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11109,AF036749.1,1,sp|AF036749.1|AF036749 Schistosoma mansoni clone Sm13 satellite sequence.,0,25,121,167,37.50,AUUAACAGACGAGUCCCAAAUAGGACGAAGUGACGCGCGUCCUGGAU,AF036749.1/121-167,121-167,0,46,AF036749.1/121-167
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11110,AF036750.1,1,sp|AF036750.1|AF036750 Schistosoma mansoni clone Sm14 satellite sequence.,0,26,119,165,45.80,AUCUAGCUGACGAGUCCCAAAUAGGACGAAAUCGCGUCAAACUGGAU,AF036750.1/119-165,119-165,0,46,AF036750.1/119-165
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11111,AF036751.1,1,sp|AF036751.1|AF036751 Schistosoma mansoni clone Sm15 satellite sequence.,0,27,118,161,49.10,AUCCAGCUGACGAGUCCCAAAUAGGACGAACGCACUUCCUAGAU,AF036751.1/118-161,118-161,0,43,AF036751.1/118-161
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11112,AF036752.1,1,sp|AF036752.1|AF036752 Schistosoma mansoni clone Sm16 satellite sequence.,0,28,118,162,51.85,AUCCAGCUGACGAGUCCCAAAUAGGACUUGACGCGCGUCCUGGAU,AF036752.1/118-162,118-162,0,44,AF036752.1/118-162
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11113,AF036753.1,1,sp|AF036753.1|AF036753 Schistosoma mansoni clone Sm17 satellite sequence.,0,29,118,161,43.59,AUCCAGCUGACCGUCGGAAAUAGGACGAAACGCGCGUCCUGGAU,AF036753.1/118-161,118-161,0,43,AF036753.1/118-161
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11114,AF036754.1,1,sp|AF036754.1|AF036754 Schistosoma mansoni clone Sm18 satellite sequence.,0,30,91,138,50.25,AUCCAGUUGACGAGUCCCAAAUUGGACGAAACGCGCGUCAAACUGGAU,AF036754.1/91-138,91-138,0,47,AF036754.1/91-138
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11115,AF036755.1,1,sp|AF036755.1|AF036755 Schistosoma mansoni clone Sm19 satellite sequence.,0,31,118,162,48.22,AUCCNGCUGACGNGUCCCAAAUAGGACGGAAGGCGCGUCCCGGAU,AF036755.1/118-162,118-162,0,44,AF036755.1/118-162
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11116,AF036756.1,1,sp|AF036756.1|AF036756 Schistosoma mansoni clone Sm20 satellite sequence.,0,32,118,162,63.00,AUCCAGCUGACGAGUCCCAAGUAGGACGAAACGCGCGUCCUGGAU,AF036756.1/118-162,118-162,0,44,AF036756.1/118-162
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16307,AF109181.1,1,sp|AF109181.1|AF109181 Schistosoma mansoni SPO-1 protein (SPO-1) gene; complete cds.,1,33,634,589,35.50,GCAAUACUGAAGAGUUCCACAAUAGGACGAAACGGCGAUCCAGUGU,AF109181.1/634-589,634-589,0,45,AF109181.1/634-589
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,25905,AF213692.1,1,sp|AF213692.1|AF213692 Schistosoma japonicum Sj-alpha-1 retroposon-like sequence.,0,34,353,397,48.09,AUCCAGCCGAUGAGUUCCAAACAGGACUAAACGCGCUUCUUGGAU,AF213692.1/353-397,222-180 353-397,0,44,AF213692.1/353-397
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,25905,AF213692.1,1,sp|AF213692.1|AF213692 Schistosoma japonicum Sj-alpha-1 retroposon-like sequence.,1,35,222,180,27.19,AUCCAUGCGAUGAGUUUCAAAUAGGACAAAACGCAUCCUGGAU,AF213692.1/222-180,222-180 353-397,0,42,AF213692.1/222-180
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,25906,AF213693.1,1,sp|AF213693.1|AF213693 Schistosoma japonicum Sj-alpha-2 retroposon-like sequence.,0,36,184,228,49.62,AUCCAACCGAUGAGUCCCAAAUAGAACGAAACCUGCGUCCUGGAU,AF213693.1/184-228,184-228,0,44,AF213693.1/184-228
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,47513,AF442688.1,1,sp|AF442688.1|AF442688 Trichobilharzia regenti Sau3A repeated sequence.,0,37,302,349,29.18,GUACUGCCGAUGAUUCCCAAACUAGAUGAAACAGCAGCUGUCCAGUAC,****    NEW  HIT  #0  ****,,2,0,AF442688.1/302-349
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,16801,AY028787.1,1,sp|AY028787.1|AY028787 Schistosoma mansoni FTZ-F1 nuclear receptor-like protein (ftz-f1) gene; complete cds; alternatively spliced.,0,38,14871,14915,27.81,UCCUUGCUGACGAGUAUUAGCUAGCACGAAACUUACGUCCAGGGU,****    NEW  HIT  #1  ****,23621-23665,2,0,AY028787.1/14871-14915
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,16801,AY028787.1,1,sp|AY028787.1|AY028787 Schistosoma mansoni FTZ-F1 nuclear receptor-like protein (ftz-f1) gene; complete cds; alternatively spliced.,0,39,23621,23665,45.24,AUUUAGCUGACGAGUCCCAAACGGUACGAAACUGGCGUCCUUGAU,AY028787.1/23621-23665,23621-23665,0,44,AY028787.1/23621-23665
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5721,Z69697.1,1,sp|Z69697.1|DSBDOPCR1 D.schiavazzii satellite DNA (clone bdopcr1),0,40,341,389,34.41,GCCCCGCUGAUGAGGUCAGGGAAGACUGAAAGUGUCGACUCUACGGGGC,Z69697.1/341-389 Z69704.1/341-389,341-389,0,48,Z69697.1/341-389
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5722,Z69699.1,1,sp|Z69699.1|DSBDOPCR2 D.schiavazzii satellite DNA (clone bdopcr2),0,41,341,389,35.04,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACAGGGC,Z69699.1/341-389,341-389,0,48,Z69699.1/341-389
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5723,Z69698.1,1,sp|Z69698.1|DSBDOPCR3 D.schiavazzii satellite DNA (clone bdopcr3),0,42,341,389,38.91,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC,Z69691.1/342-390 Z69703.1/343-391 Z69702.1/341-389 Z69692.1/343-391 Z69696.1/341-389 Z69690.1/342-390 Z69695.1/345-393 Z69685.1/342-390 Z69698.1/341-389,341-389,0,48,Z69698.1/341-389
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5724,Z69700.1,1,sp|Z69700.1|DSBDOPCR4 D.schiavazzii satellite DNA (clone bdopcr4),0,43,341,389,34.96,GCCCCGCUGAUGAGGUCAGGGAAAACCGAAAGUGUCGACUCUACGGGGC,Z69700.1/341-389,341-389,0,48,Z69700.1/341-389
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5725,Z69701.1,1,sp|Z69701.1|DSBDOPCR5 D.schiavazzii satellite DNA (clone bdopcr5),0,44,341,389,33.46,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCAACGGGGC,Z69701.1/341-389,341-389,0,48,Z69701.1/341-389
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5726,Z69702.1,1,sp|Z69702.1|DSBDOPCR6 D.schiavazzii satellite DNA (clone bdopcr6),0,45,341,389,38.91,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC,Z69691.1/342-390 Z69703.1/343-391 Z69702.1/341-389 Z69692.1/343-391 Z69696.1/341-389 Z69690.1/342-390 Z69695.1/345-393 Z69685.1/342-390 Z69698.1/341-389,341-389,0,48,Z69702.1/341-389
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5727,Z69703.1,1,sp|Z69703.1|DSBDOPCR7 D.schiavazzii satellite DNA (clone bdopcr7),0,46,343,391,38.91,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC,Z69691.1/342-390 Z69703.1/343-391 Z69702.1/341-389 Z69692.1/343-391 Z69696.1/341-389 Z69690.1/342-390 Z69695.1/345-393 Z69685.1/342-390 Z69698.1/341-389,343-391,0,48,Z69703.1/343-391
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5736,Z69704.1,1,sp|Z69704.1|DSBDPCR1B D.schiavazzii satellite DNA (clone bdopcr1),0,47,341,389,34.41,GCCCCGCUGAUGAGGUCAGGGAAGACUGAAAGUGUCGACUCUACGGGGC,Z69697.1/341-389 Z69704.1/341-389,341-389,0,48,Z69704.1/341-389
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5759,Z69691.1,1,sp|Z69691.1|DSCPSPCR1 D.schiavazzii satellite DNA (clone cpspcr1),0,48,342,390,38.91,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC,Z69691.1/342-390 Z69703.1/343-391 Z69702.1/341-389 Z69692.1/343-391 Z69696.1/341-389 Z69690.1/342-390 Z69695.1/345-393 Z69685.1/342-390 Z69698.1/341-389,342-390,0,48,Z69691.1/342-390
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5760,Z69692.1,1,sp|Z69692.1|DSCPSPCR2 D.schiavazzii satellite DNA (clone cpspcr2),0,49,343,391,38.91,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC,Z69691.1/342-390 Z69703.1/343-391 Z69702.1/341-389 Z69692.1/343-391 Z69696.1/341-389 Z69690.1/342-390 Z69695.1/345-393 Z69685.1/342-390 Z69698.1/341-389,343-391,0,48,Z69692.1/343-391
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5761,Z69693.1,1,sp|Z69693.1|DSCPSPCR3 D.schiavazzii satellite DNA (clone cpspcr3),0,50,343,391,30.54,GCCCUGCUGAUGAGGUCAGGGAAGACUGAAAGUGUCGACUCUACGGGGC,Z69693.1/343-391,343-391,0,48,Z69693.1/343-391
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5762,Z69694.1,1,sp|Z69694.1|DSCPSPCR4 D.schiavazzii satellite DNA (clone cpspcr4),0,51,342,390,35.90,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGUGC,Z69694.1/342-390,342-390,0,48,Z69694.1/342-390
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5763,Z69695.1,1,sp|Z69695.1|DSCPSPCR5 D.schiavazzii satellite DNA (clone cpspcr5),0,52,345,393,38.91,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC,Z69691.1/342-390 Z69703.1/343-391 Z69702.1/341-389 Z69692.1/343-391 Z69696.1/341-389 Z69690.1/342-390 Z69695.1/345-393 Z69685.1/342-390 Z69698.1/341-389,345-393,0,48,Z69695.1/345-393
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,5764,Z69696.1,1,sp|Z69696.1|DSCPSPCR6 D.schiavazzii satellite DNA (clone cpspcr6),0,53,341,389,38.91,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC,Z69691.1/342-390 Z69703.1/343-391 Z69702.1/341-389 Z69692.1/343-391 Z69696.1/341-389 Z69690.1/342-390 Z69695.1/345-393 Z69685.1/342-390 Z69698.1/341-389,341-389,0,48,Z69696.1/341-389
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,6267,Z69685.1,1,sp|Z69685.1|DSVETPCR1 D.schiavazzii satellite DNA (clone vetpcr1),0,54,342,390,38.91,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC,Z69691.1/342-390 Z69703.1/343-391 Z69702.1/341-389 Z69692.1/343-391 Z69696.1/341-389 Z69690.1/342-390 Z69695.1/345-393 Z69685.1/342-390 Z69698.1/341-389,342-390,0,48,Z69685.1/342-390
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,6268,Z69686.1,1,sp|Z69686.1|DSVETPCR2 D.schiavazzii satellite DNA (clone vetpcr2),0,55,342,390,36.57,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGACUCUACGGGGC,Z69686.1/342-390 Z69687.1/342-390,342-390,0,48,Z69686.1/342-390
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,6269,Z69688.1,1,sp|Z69688.1|DSVETPCR3 D.schiavazzii satellite DNA (clone vetpcr3),0,56,265,313,31.75,GCGCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUAUGGGGC,Z69688.1/265-313,265-313,0,48,Z69688.1/265-313
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,6270,Z69689.1,1,sp|Z69689.1|DSVETPCR4 D.schiavazzii satellite DNA (clone vetpcr4),0,57,341,389,29.82,GCCCCGCUGGUGGGGUCAGGGAAGGCCGAAAGUGUCGACUCUACGGGGC,Z69689.1/341-389,341-389,0,48,Z69689.1/341-389
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,6271,Z69690.1,1,sp|Z69690.1|DSVETPCR5 D.schiavazzii satellite DNA (clone vetpcr5),0,58,342,390,38.91,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC,Z69691.1/342-390 Z69703.1/343-391 Z69702.1/341-389 Z69692.1/343-391 Z69696.1/341-389 Z69690.1/342-390 Z69695.1/345-393 Z69685.1/342-390 Z69698.1/341-389,342-390,0,48,Z69690.1/342-390
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,6276,Z69687.1,1,sp|Z69687.1|DSVTPCR2B D.schiavazzii satellite DNA (clone vetpcr2),0,59,342,390,36.57,GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGACUCUACGGGGC,Z69686.1/342-390 Z69687.1/342-390,342-390,0,48,Z69687.1/342-390
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,19925,S80278.1,1,sp|S80278.1|S80278 {tandem repetitive sequence} [Opisthorchis viverrini; Genomic; 333 nt].,0,60,127,168,24.39,GCCUACCUGAUAGCCCCGAGAAGGGCGAAACCGGUCGUGGGC,****    NEW  HIT  #2  ****,,2,0,S80278.1/127-168
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20744,U12442.1,1,sp|U12442.1|SM12442 Schistosoma mansoni OZ.A female-specific retroposon SMAlphafem-1 repeat region.,0,61,241,285,26.51,AUCCAGAUGGUCAGUGGCAAAUCGAACGAAACACGCAUCCUGCAU,****    NEW  HIT  #3  ****,,2,0,U12442.1/241-285
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20854,D87492.1,1,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences.,0,62,743,788,47.09,GCACUGCUGAGGAGUCCCACAAUAGGACGAAACGACCGUCCAGUAC,D87492.1/743-788,1479-1524 2147-2192 743-788,0,45,D87492.1/743-788
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20854,D87492.1,1,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences.,0,63,1479,1524,43.51,AUCCAGUUGAUGAGUCCCAGAGAAGGACGAAACGUGCAUCCUGGAU,D87492.1/1479-1524,1479-1524 2147-2192 743-788,0,45,D87492.1/1479-1524
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20854,D87492.1,1,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences.,0,64,2147,2192,44.65,CAAUUGCUGAGGAGUCCCAUAAUAGGACGAAACGGCCGUCCAGUGC,D87492.1/2147-2192,1479-1524 2147-2192 743-788,0,45,D87492.1/2147-2192
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20855,D87493.1,1,sp|D87493.1|SMD493 Schistosoma mansoni DNA for repeat sequences.,0,65,3564,3609,34.54,GCACUUCUGAAGAGUCCCAUGCUAGGACGAAACAGCCUUCCAGUAC,D87493.1/3564-3609,3564-3609,0,45,D87493.1/3564-3609
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20889,L23117.1,1,sp|L23117.1|SMGLUSTRB Schistosoma mansoni glutathione S-transferase gene; protein bind region.,0,66,1024,1069,35.67,CGACUGCUGAGGAGUCCCACAAUAGGGCGAUACGGACGUCCAGUGC,M98271.1/8-53 L23117.1/1024-1069,1024-1069,0,45,L23117.1/1024-1069
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20895,M98271.1,1,sp|M98271.1|SMGSTM Schistosoma mansoni 28 kDa glutathione S-transferase (GST) gene; complete cds.,0,67,8,53,35.67,CGACUGCUGAGGAGUCCCACAAUAGGGCGAUACGGACGUCCAGUGC,M98271.1/8-53 L23117.1/1024-1069,8-53,0,45,M98271.1/8-53
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20942,L07513.1,1,sp|L07513.1|SMMTEGANT Schistosoma mansoni major tegumental antigen SM15 (GSM70) gene; complete cds.,0,68,246,290,38.24,AUCUAGCUGACGAGUCCCGAAUAGGAGGAAGUGCUCGUUCAAUAU,L07513.1/246-290,246-290 84-40,0,44,L07513.1/246-290
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20942,L07513.1,1,sp|L07513.1|SMMTEGANT Schistosoma mansoni major tegumental antigen SM15 (GSM70) gene; complete cds.,1,69,84,40,34.37,AUCUAAAUGACGAGUCCUAAAUGGAACUAAACACAUGUGUUUGAU,L07513.1/84-40,246-290 84-40,0,44,L07513.1/84-40
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20962,X15619.1,1,sp|X15619.1|SMRED1 Schistosoma mansoni repetitive DNA element d-1 of SM(alpha) family,0,70,121,168,49.65,AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUCAAAAUGCAU,X15619.1/121-168 M27678.1/121-168,121-168,0,47,X15619.1/121-168
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20963,X15620.1,1,sp|X15620.1|SMRED2 Schistosoma mansoni repetitive DNA element d-2 of SM(alpha) family,0,71,19,62,36.02,GGCUAGCAGUGGAAUCCAAAUAGGACGAAACGCGCGUCCUGGAU,M27679.1/19-62 X15620.1/19-62,19-62,0,43,X15620.1/19-62
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20964,X15621.1,1,sp|X15621.1|SMRED3 Schistosoma mansoni repetitive DNA element d-3 of SM(alpha) family,0,72,101,144,32.51,ACUCCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUCCUAGAU,X15621.1/101-144 M27680.1/101-144,101-144 76-34,0,43,X15621.1/101-144
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20964,X15621.1,1,sp|X15621.1|SMRED3 Schistosoma mansoni repetitive DNA element d-3 of SM(alpha) family,1,73,76,34,46.03,AUCCAGCUGACGAGUCCCAAAUAAGACGAACGCGCGUCUGGAU,M27680.1/76-34 X15621.1/76-34,101-144 76-34,0,42,X15621.1/76-34
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20966,X15618.1,1,sp|X15618.1|SMRET2 Schistosoma mansoni repetitive DNA element t-2 of SM(alpha) family,0,74,136,180,46.31,AUCCAACUGACCAGUCGGAAAUUGGACGAAACGCGCGUCCUGGAU,X15618.1/136-180 M19148.1/160-204 M27677.1/136-180,136-180,0,44,X15618.1/136-180
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20976,M27676.1,1,sp|M27676.1|SMRSRLA S.mansoni retroposon-like repetitive DNA element DNA.,0,75,133,177,65.54,AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUCCUGGAU,M27676.1/133-177 AF036742.1/118-162 AF036744.1/118-162 AF036739.1/118-162,133-177,0,44,M27676.1/133-177
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20977,M27677.1,1,sp|M27677.1|SMRSRLB S.mansoni retroposon-like repetitive DNA element DNA.,0,76,136,180,46.31,AUCCAACUGACCAGUCGGAAAUUGGACGAAACGCGCGUCCUGGAU,X15618.1/136-180 M19148.1/160-204 M27677.1/136-180,136-180,0,44,M27677.1/136-180
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20978,M27678.1,1,sp|M27678.1|SMRSRLC S.mansoni retroposon-like repetitive DNA element DNA.,0,77,121,168,49.65,AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUCAAAAUGCAU,X15619.1/121-168 M27678.1/121-168,121-168,0,47,M27678.1/121-168
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20979,M27679.1,1,sp|M27679.1|SMRSRLD S.mansoni retroposon-like repetitive DNA element DNA.,0,78,19,62,36.02,GGCUAGCAGUGGAAUCCAAAUAGGACGAAACGCGCGUCCUGGAU,M27679.1/19-62 X15620.1/19-62,19-62,0,43,M27679.1/19-62
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20980,M27680.1,1,sp|M27680.1|SMRSRLE S.mansoni retroposon-like repetitive DNA element DNA.,0,79,101,144,32.51,ACUCCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUCCUAGAU,X15621.1/101-144 M27680.1/101-144,76-34 101-144,0,43,M27680.1/101-144
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20980,M27680.1,1,sp|M27680.1|SMRSRLE S.mansoni retroposon-like repetitive DNA element DNA.,1,80,76,34,46.03,AUCCAGCUGACGAGUCCCAAAUAAGACGAACGCGCGUCUGGAU,M27680.1/76-34 X15621.1/76-34,76-34 101-144,0,42,M27680.1/76-34
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,20983,M19148.1,1,sp|M19148.1|SMSATA S.mansoni satellite DNA repeat.,0,81,160,204,46.31,AUCCAACUGACCAGUCGGAAAUUGGACGAAACGCGCGUCCUGGAU,X15618.1/136-180 M19148.1/160-204 M27677.1/136-180,160-204,0,44,M19148.1/160-204
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5427,AC112791.3,1,sp|AC112791.3|AC112791 Mus musculus chromosome 13 clone RP23-182O1; complete sequence.,0,82,198183,198226,24.64,UUCCUGAGAAGAGAGCAAGACAGAUCGAAACUGGAGUCCUACAC,****    NEW  HIT  #4  ****,,2,0,AC112791.3/198183-198226
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,18966,AF320600.1,1,sp|AF320600.1|AF320600 Mus musculus NKR-P1F (Nkrp1f) gene; exons 2-6; and C lectin-related protein A gene; complete cds.,0,83,23589,23633,29.04,ACUGUACUGAUGAGUCCCAAAAAGGACGAAAUAACAGUUCACAAA,AF320600.1/23589-23633 BC051091.1/1473-1517,23589-23633,0,44,AF320600.1/23589-23633
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26083,AL773539.18,1,sp|AL773539.18|AL773539 Mouse DNA sequence from clone RP23-9F18 on chromosome 4,0,84,161571,161618,31.04,CUGCAGCUGAUGAGCUCCAAAAAGAGCGAAACCUGUUGGGUCCUGCAG,****    NEW  HIT  #5  ****,,2,0,AL773539.18/161571-161618
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26661,AL844845.7,1,sp|AL844845.7|AL844845 Mouse DNA sequence from clone RP23-155C1 on chromosome 2,0,85,42315,42364,24.27,CCAUUCCACAAGAGACCCAAACAGGUCUAAAAGUACCAGCCUCUGAGUUG,****    NEW  HIT  #6  ****,,2,0,AL844845.7/42315-42364
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,49015,BC051091.1,1,sp|BC051091.1|BC051091 Mus musculus; Similar to C lectin-related protein A; clone MGC:59011 IMAGE:6529908; mRNA; complete cds.,0,86,1473,1517,29.04,ACUGUACUGAUGAGUCCCAAAAAGGACGAAAUAACAGUUCACAAA,AF320600.1/23589-23633 BC051091.1/1473-1517,1473-1517,0,44,BC051091.1/1473-1517
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50181,AF229815.1,1,sp|AF229815.1|AF229815 Avocado sunblotch viroid Sc isolate CF1; complete sequence.,1,87,178,64,42.03,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG,AF404030.1/178-64 AF229815.1/178-64 AF404044.1/70-184,178-64,0,114,AF229815.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50182,AF229816.1,1,sp|AF229816.1|AF229816 Avocado sunblotch viroid Sc isolate CF2; complete sequence.,1,88,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,AF229816.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50183,AF229817.1,1,sp|AF229817.1|AF229817 Avocado sunblotch viroid Sc isolate CF3; complete sequence.,1,89,177,63,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,177-63,0,114,AF229817.1/177-63
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50184,AF229818.1,1,sp|AF229818.1|AF229818 Avocado sunblotch viroid Sc isolate CF4; complete sequence.,1,90,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,AF229818.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50185,AF229819.1,1,sp|AF229819.1|AF229819 Avocado sunblotch viroid Sc isolate CF5; complete sequence.,1,91,177,63,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,177-63,0,114,AF229819.1/177-63
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50186,AF229820.1,1,sp|AF229820.1|AF229820 Avocado sunblotch viroid B isolate CF6; complete sequence.,1,92,180,64,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF229820.1/180-64,180-64,0,116,AF229820.1/180-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50187,AF229821.1,1,sp|AF229821.1|AF229821 Avocado sunblotch viroid B isolate CF7; complete sequence.,1,93,180,64,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF229824.1/180-64 AF229821.1/180-64,180-64,0,116,AF229821.1/180-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50188,AF229822.1,1,sp|AF229822.1|AF229822 Avocado sunblotch viroid B isolate CF8; complete sequence.,1,94,179,64,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,179-64,0,115,AF229822.1/179-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50189,AF229823.1,1,sp|AF229823.1|AF229823 Avocado sunblotch viroid B isolate CF9; complete sequence.,1,95,180,64,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF229823.1/180-64,180-64,0,116,AF229823.1/180-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50190,AF229824.1,1,sp|AF229824.1|AF229824 Avocado sunblotch viroid B isolate CF10; complete sequence.,1,96,180,64,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF229824.1/180-64 AF229821.1/180-64,180-64,0,116,AF229824.1/180-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50191,AF229825.1,1,sp|AF229825.1|AF229825 Avocado sunblotch viroid Sc isolate CF11; complete sequence.,1,97,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,AF229825.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50192,AF229826.1,1,sp|AF229826.1|AF229826 Avocado sunblotch viroid Sc isolate CF12; complete sequence.,1,98,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,AF229826.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50193,AF229827.1,1,sp|AF229827.1|AF229827 Avocado sunblotch viroid Sc isolate CF13; complete sequence.,1,99,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,AF229827.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,50194,AF229828.1,1,sp|AF229828.1|AF229828 Avocado sunblotch viroid Sc isolate CF14; complete sequence.,1,100,177,63,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,177-63,0,114,AF229828.1/177-63
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75382,AF404029.1,1,sp|AF404029.1|AF404029 Avocado sunblotch viroid isolate CF15; complete genome.,1,101,178,64,42.03,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUCUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG,AF404029.1/178-64,178-64,0,114,AF404029.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75383,AF404030.1,1,sp|AF404030.1|AF404030 Avocado sunblotch viroid isolate CF16; complete genome.,1,102,178,64,42.03,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG,AF404030.1/178-64 AF229815.1/178-64 AF404044.1/70-184,178-64,0,114,AF404030.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75384,AF404031.1,1,sp|AF404031.1|AF404031 Avocado sunblotch viroid isolate CF17; complete genome.,0,103,70,184,40.77,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACAACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCGAG,AF404031.1/70-184,70-184,0,114,AF404031.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75385,AF404032.1,1,sp|AF404032.1|AF404032 Avocado sunblotch viroid isolate CF18; complete genome.,1,104,170,55,32.87,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGACCAG,AF404032.1/170-55,170-55,0,115,AF404032.1/170-55
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75386,AF404033.1,1,sp|AF404033.1|AF404033 Avocado sunblotch viroid isolate CF19; complete genome.,0,105,70,184,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUCCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404033.1/70-184,70-184,0,114,AF404033.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75387,AF404034.1,1,sp|AF404034.1|AF404034 Avocado sunblotch viroid isolate CF20; complete genome.,1,106,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,AF404034.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75388,AF404035.1,1,sp|AF404035.1|AF404035 Avocado sunblotch viroid isolate CF21; complete genome.,0,107,70,186,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404040.1/70-186 M31095.1/180-64 AF404048.1/179-63 M31088.1/181-65 AF404070.1/70-186 AF404035.1/70-186,70-186,0,116,AF404035.1/70-186
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75389,AF404036.1,1,sp|AF404036.1|AF404036 Avocado sunblotch viroid isolate CF22; complete genome.,0,108,70,184,40.22,CUUUCCCUGAAGAGGCGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404069.1/70-184 AF404036.1/70-184,70-184,0,114,AF404036.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75390,AF404037.1,1,sp|AF404037.1|AF404037 Avocado sunblotch viroid isolate CF23; complete genome.,1,109,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,AF404037.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75391,AF404038.1,1,sp|AF404038.1|AF404038 Avocado sunblotch viroid isolate CF24; complete genome.,0,110,70,185,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,70-185,0,115,AF404038.1/70-185
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75392,AF404039.1,1,sp|AF404039.1|AF404039 Avocado sunblotch viroid isolate CF25; complete genome.,0,111,70,184,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,70-184,0,114,AF404039.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75393,AF404040.1,1,sp|AF404040.1|AF404040 Avocado sunblotch viroid isolate CF26; complete genome.,0,112,70,186,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404040.1/70-186 M31095.1/180-64 AF404048.1/179-63 M31088.1/181-65 AF404070.1/70-186 AF404035.1/70-186,70-186,0,116,AF404040.1/70-186
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75394,AF404041.1,1,sp|AF404041.1|AF404041 Avocado sunblotch viroid isolate CF27; complete genome.,0,113,70,183,44.39,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404041.1/70-183,70-183,0,113,AF404041.1/70-183
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75395,AF404042.1,1,sp|AF404042.1|AF404042 Avocado sunblotch viroid isolate CF28; complete genome.,1,114,177,63,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,177-63,0,114,AF404042.1/177-63
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75396,AF404043.1,1,sp|AF404043.1|AF404043 Avocado sunblotch viroid isolate CF29; complete genome.,1,115,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,AF404043.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75397,AF404044.1,1,sp|AF404044.1|AF404044 Avocado sunblotch viroid isolate CF30; complete genome.,0,116,70,184,42.03,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG,AF404030.1/178-64 AF229815.1/178-64 AF404044.1/70-184,70-184,0,114,AF404044.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75398,AF404045.1,1,sp|AF404045.1|AF404045 Avocado sunblotch viroid isolate CF31; complete genome.,0,117,70,184,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,70-184,0,114,AF404045.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75399,AF404046.1,1,sp|AF404046.1|AF404046 Avocado sunblotch viroid isolate CF32; complete genome.,1,118,177,64,36.50,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGCUCACCACGACUCCUCCUUCUCUCAAAGUCGAAACUCAGAGUCGGGAAG,AF404046.1/177-64,177-64,0,113,AF404046.1/177-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75400,AF404047.1,1,sp|AF404047.1|AF404047 Avocado sunblotch viroid isolate CF33; complete genome.,1,119,177,63,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,177-63,0,114,AF404047.1/177-63
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75401,AF404048.1,1,sp|AF404048.1|AF404048 Avocado sunblotch viroid isolate CF34; complete genome.,1,120,179,63,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404040.1/70-186 M31095.1/180-64 AF404048.1/179-63 M31088.1/181-65 AF404070.1/70-186 AF404035.1/70-186,179-63,0,116,AF404048.1/179-63
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75402,AF404049.1,1,sp|AF404049.1|AF404049 Avocado sunblotch viroid isolate CF35; complete genome.,1,121,177,63,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGGUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404049.1/177-63,177-63,0,114,AF404049.1/177-63
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75403,AF404050.1,1,sp|AF404050.1|AF404050 Avocado sunblotch viroid isolate CF36; complete genome.,0,122,70,184,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,70-184,0,114,AF404050.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75404,AF404051.1,1,sp|AF404051.1|AF404051 Avocado sunblotch viroid isolate CF37; complete genome.,0,123,70,186,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUAAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404051.1/70-186,70-186,0,116,AF404051.1/70-186
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75405,AF404052.1,1,sp|AF404052.1|AF404052 Avocado sunblotch viroid isolate CF38; complete genome.,0,124,70,187,39.29,CUUUCCCUGAAGUGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404052.1/70-187,70-187,0,117,AF404052.1/70-187
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75406,AF404053.1,1,sp|AF404053.1|AF404053 Avocado sunblotch viroid isolate CF39; complete genome.,0,125,70,186,41.95,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG,AF404053.1/70-186,70-186,0,116,AF404053.1/70-186
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75407,AF404054.1,1,sp|AF404054.1|AF404054 Avocado sunblotch viroid isolate CF40; complete genome.,0,126,70,188,36.82,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAACAG,AF404054.1/70-188,70-188,0,118,AF404054.1/70-188
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75408,AF404055.1,1,sp|AF404055.1|AF404055 Avocado sunblotch viroid isolate CF41; complete genome.,0,127,70,187,44.23,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404055.1/70-187,70-187,0,117,AF404055.1/70-187
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75409,AF404056.1,1,sp|AF404056.1|AF404056 Avocado sunblotch viroid isolate CF42; complete genome.,1,128,180,64,40.14,CUUUCCCUGAAGAGUCGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404056.1/180-64,180-64,0,116,AF404056.1/180-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75410,AF404057.1,1,sp|AF404057.1|AF404057 Avocado sunblotch viroid isolate CF43; complete genome.,0,129,70,187,44.23,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404057.1/70-187,70-187,0,117,AF404057.1/70-187
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75411,AF404058.1,1,sp|AF404058.1|AF404058 Avocado sunblotch viroid isolate CF44; complete genome.,0,130,70,187,36.86,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAACAG,AF404058.1/70-187,70-187,0,117,AF404058.1/70-187
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75412,AF404059.1,1,sp|AF404059.1|AF404059 Avocado sunblotch viroid isolate CF45; complete genome.,0,131,70,187,44.23,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404059.1/70-187,70-187,0,117,AF404059.1/70-187
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75413,AF404060.1,1,sp|AF404060.1|AF404060 Avocado sunblotch viroid isolate CF46; complete genome.,0,132,70,186,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUCUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404060.1/70-186,70-186,0,116,AF404060.1/70-186
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75414,AF404061.1,1,sp|AF404061.1|AF404061 Avocado sunblotch viroid isolate CF47; complete genome.,0,133,70,185,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGCUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404061.1/70-185,70-185,0,115,AF404061.1/70-185
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75415,AF404062.1,1,sp|AF404062.1|AF404062 Avocado sunblotch viroid isolate CF48; complete genome.,1,134,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACCAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404062.1/178-64,178-64,0,114,AF404062.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75416,AF404063.1,1,sp|AF404063.1|AF404063 Avocado sunblotch viroid isolate CF49; complete genome.,1,135,176,63,44.39,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404063.1/176-63,176-63,0,113,AF404063.1/176-63
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75417,AF404064.1,1,sp|AF404064.1|AF404064 Avocado sunblotch viroid isolate CF50; complete genome.,0,136,70,184,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,70-184,0,114,AF404064.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75418,AF404065.1,1,sp|AF404065.1|AF404065 Avocado sunblotch viroid isolate CF51; complete genome.,0,137,70,184,41.92,CUUUCCCUGAAGAGAUGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404065.1/70-184,70-184,0,114,AF404065.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75419,AF404066.1,1,sp|AF404066.1|AF404066 Avocado sunblotch viroid isolate CF52; complete genome.,0,138,70,185,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,70-185,0,115,AF404066.1/70-185
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75420,AF404067.1,1,sp|AF404067.1|AF404067 Avocado sunblotch viroid isolate CF53; complete genome.,0,139,70,184,42.03,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAACAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG,AF404067.1/70-184,70-184,0,114,AF404067.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75421,AF404068.1,1,sp|AF404068.1|AF404068 Avocado sunblotch viroid isolate CF54; complete genome.,0,140,70,185,40.66,CUUUCCAUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404068.1/70-185,70-185,0,115,AF404068.1/70-185
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75422,AF404069.1,1,sp|AF404069.1|AF404069 Avocado sunblotch viroid isolate CF55; complete genome.,0,141,70,184,40.22,CUUUCCCUGAAGAGGCGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404069.1/70-184 AF404036.1/70-184,70-184,0,114,AF404069.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75423,AF404070.1,1,sp|AF404070.1|AF404070 Avocado sunblotch viroid isolate CF56; complete genome.,0,142,70,186,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404040.1/70-186 M31095.1/180-64 AF404048.1/179-63 M31088.1/181-65 AF404070.1/70-186 AF404035.1/70-186,70-186,0,116,AF404070.1/70-186
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75424,AF404071.1,1,sp|AF404071.1|AF404071 Avocado sunblotch viroid isolate CF57; complete genome.,0,143,70,184,38.77,CUUUCCCUGAAGAGACGAUGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404071.1/70-184,70-184,0,114,AF404071.1/70-184
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75425,AF404072.1,1,sp|AF404072.1|AF404072 Avocado sunblotch viroid isolate CF58; complete genome.,1,144,179,64,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,179-64,0,115,AF404072.1/179-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75426,AF404073.1,1,sp|AF404073.1|AF404073 Avocado sunblotch viroid isolate CF59; complete genome.,0,145,70,162,45.23,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404073.1/70-162,70-162,0,92,AF404073.1/70-162
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,75427,AF404074.1,1,sp|AF404074.1|AF404074 Avocado sunblotch viroid isolate CF60; complete genome.,0,146,1,109,24.29,UCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGA,AF404074.1/1-109,1-109,0,108,AF404074.1/1-109
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98879,M31100.1,1,sp|M31100.1|ASBVCS10 Avocado sunblotch viroid complete sequence; variant C-10.,1,147,178,64,41.59,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUAGGAAAG,M31100.1/178-64,178-64,0,114,M31100.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98880,M27297.1,1,sp|M27297.1|ASBVCS1A Avocado sunblotch viroid complete sequence; variant A-1.,1,148,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,M27297.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98881,M31086.1,1,sp|M31086.1|ASBVCS1B Avocado sunblotch viroid complete sequence; variant B-1.,1,149,179,65,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,179-65,0,114,M31086.1/179-65
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98882,M31085.1,1,sp|M31085.1|ASBVCS2A Avocado sunblotch viroid complete sequence; variants A-2 and C-1.,1,150,179,64,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,179-64,0,115,M31085.1/179-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98883,M31087.1,1,sp|M31087.1|ASBVCS2B Avocado sunblotch viroid complete sequence; variant B-2.,1,151,181,66,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,181-66,0,115,M31087.1/181-66
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98884,M31092.1,1,sp|M31092.1|ASBVCS2C Avocado sunblotch viroid complete sequence; variant C-2.,1,152,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,M31092.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98885,M31088.1,1,sp|M31088.1|ASBVCS3B Avocado sunblotch viroid complete sequence; variant B-3.,1,153,181,65,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404040.1/70-186 M31095.1/180-64 AF404048.1/179-63 M31088.1/181-65 AF404070.1/70-186 AF404035.1/70-186,181-65,0,116,M31088.1/181-65
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98886,M31093.1,1,sp|M31093.1|ASBVCS3C Avocado sunblotch viroid complete sequence; variant C-3.,1,154,179,64,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,179-64,0,115,M31093.1/179-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98887,M31089.1,1,sp|M31089.1|ASBVCS4B Avocado sunblotch viroid complete sequence; variant B-4.,1,155,179,65,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,179-65,0,114,M31089.1/179-65
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98888,M31094.1,1,sp|M31094.1|ASBVCS4C Avocado sunblotch viroid complete sequence; variant C-4.,1,156,177,64,44.39,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31094.1/177-64,177-64,0,113,M31094.1/177-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98889,M31090.1,1,sp|M31090.1|ASBVCS5B Avocado sunblotch viroid complete sequence; variant B-5.,1,157,179,65,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,179-65,0,114,M31090.1/179-65
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98890,M31095.1,1,sp|M31095.1|ASBVCS5C Avocado sunblotch viroid complete sequence; variant C-5.,1,158,180,64,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,AF404040.1/70-186 M31095.1/180-64 AF404048.1/179-63 M31088.1/181-65 AF404070.1/70-186 AF404035.1/70-186,180-64,0,116,M31095.1/180-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98891,M31091.1,1,sp|M31091.1|ASBVCS6B Avocado sunblotch viroid complete sequence; variant B-6.,1,159,180,65,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,180-65,0,115,M31091.1/180-65
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98892,M31096.1,1,sp|M31096.1|ASBVCS6C Avocado sunblotch viroid complete sequence; variant C-6.,1,160,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,M31096.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98893,M31097.1,1,sp|M31097.1|ASBVCS7C Avocado sunblotch viroid complete sequence; variant C-7.,1,161,179,64,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,179-64,0,115,M31097.1/179-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98894,M31098.1,1,sp|M31098.1|ASBVCS8C Avocado sunblotch viroid complete sequence; variant C-8.,1,162,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,M31098.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98895,M31099.1,1,sp|M31099.1|ASBVCS9C Avocado sunblotch viroid complete sequence; variant C-9.,1,163,179,64,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,179-64,0,115,M31099.1/179-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98896,X13000.1,1,sp|X13000.1|ASBVXX Avocado sunblotch viroid (ASBV) genomic RNA,1,164,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,X13000.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98965,X52041.1,1,sp|X52041.1|ASVI Avocado sunblotch viroid RNA genome variant I,1,165,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,X52041.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98967,X52042.1,1,sp|X52042.1|ASVII Avocado sunblotch viroid RNA genome variant II,1,166,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,X52043.1/178-64 X52042.1/178-64,178-64,0,114,X52042.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98968,X52043.1,1,sp|X52043.1|ASVIII Avocado sunblotch viroid RNA genome variant III,1,167,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,X52043.1/178-64 X52042.1/178-64,178-64,0,114,X52043.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98970,X52044.1,1,sp|X52044.1|ASVIV Avocado sunblotch viroid RNA genome variant IV,1,168,179,64,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,X52044.1/179-64,179-64,0,115,X52044.1/179-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,98993,X52045.1,1,sp|X52045.1|ASVV Avocado sunblotch viroid RNA genome variant V,1,169,180,64,44.27,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,X52045.1/180-64,180-64,0,116,X52045.1/180-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140420,AJ536612.1,1,sp|AJ536612.1|ELA536612 Eggplant latent viroid complete genome; isolate 1,0,170,13,62,24.26,CCACCCCUGAUGAGUCCAAAAGGACGAAAUGGGGUUCUGCCAUGGGGUAG,****    NEW  HIT  #7  ****,,2,0,AJ536612.1/13-62
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,189221,S73860.1,1,sp|S73860.1|S73860 {symptomless carrier tissue-associated} [avocado sunblotch viroid ASBVd-Sc; Genomic RNA Mutant; 247 nt].,1,171,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,S73860.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,189222,S73861.1,1,sp|S73861.1|S73861 {variegated carrier tissue-associated} [avocado sunblotch viroid ASBVd-V; Genomic RNA Mutant; 248 nt].,1,172,179,64,44.31,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31087.1/181-66 AF229822.1/179-64 M31085.1/179-64 AF404072.1/179-64 M31099.1/179-64 M31097.1/179-64 M31091.1/180-65 AF404038.1/70-185 AF404066.1/70-185 M31093.1/179-64 S73861.1/179-64,179-64,0,115,S73861.1/179-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,189270,S74687.1,1,sp|S74687.1|S74687 {bleached carrier tissue-associated} [avocado sunblotch viroid ASBVd-B; Genomic RNA Mutant; 250 nt].,1,173,181,64,44.23,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUUUUUUAAAAAGUUCACCACAACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,S74687.1/181-64,181-64,0,117,S74687.1/181-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,196582,J02020.1,1,sp|J02020.1|XX Avocado sunblotch viroid; complete genome.,1,174,178,64,44.35,CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG,M31096.1/178-64 AF229826.1/178-64 M31090.1/179-65 AF229825.1/178-64 AF404042.1/177-63 X52041.1/178-64 AF229818.1/178-64 AF229828.1/177-63 M31092.1/178-64 S73860.1/178-64 AF229816.1/178-64 AF404039.1/70-184 AF404045.1/70-184 AF229819.1/177-63 AF404037.1/178-64 M27297.1/178-64 M31089.1/179-65 AF404043.1/178-64 AF404047.1/177-63 J02020.1/178-64 AF404050.1/70-184 M31098.1/178-64 AF229817.1/177-63 AF404064.1/70-184 AF404034.1/178-64 M31086.1/179-65 AF229827.1/178-64 X13000.1/178-64,178-64,0,114,J02020.1/178-64
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,25279,L05839.1,1,sp|L05839.1|ATSAT2C Amphiuma tridactylum satellite 2 repetitive element; clone pAtri H.,0,175,5,47,24.13,ACCUCACUGAUGAUGCCCAAUGAGGCUGAAACGCGUUUGGGGU,****    NEW  HIT  #8  ****,,2,0,L05839.1/5-47
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,25280,L05856.1,1,sp|L05856.1|ATSAT2C1 Ambystoma talpoideum satellite 2 repetitive element; clone pAtal 7.,0,176,5,47,27.14,UCCUCACUGAUGAGGCCCAACAAGGCCGAAACAUGUUUGGGGA,****    NEW  HIT  #9  ****,,2,0,L05856.1/5-47
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,25283,L05841.1,1,sp|L05841.1|ATSAT2E Amphiuma tridactylum satellite 2 repetitive element; clone pAtri D.,0,177,5,47,24.13,ACCUCACUGAUGAUGCCCAAUGAGGCUGAAACGCGUUUGGGGU,****    NEW  HIT (duplicate of new hit #8)   ****,,2,0,L05841.1/5-47
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,25289,L05844.1,1,sp|L05844.1|ATSAT2H Amphiuma tridactylum satellite 2 repetitive element; clone pAtri E.,0,178,5,47,25.36,ACCUCACUGAUGAUGCCCAAUGAGGCUGAAAUGCGUCUGGGGU,****    NEW  HIT  #11  ****,,2,0,L05844.1/5-47
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,25290,L05861.1,1,sp|L05861.1|ATSAT2H1 Ambystoma talpoideum satellite 2 repetitive element; clone pAtal 2.,0,179,5,47,27.14,UCCUCACUGAUGAGGCCCAACAAGGCCGAAACAUGUUUGGGGA,****    NEW  HIT (duplicate of new hit #9)   ****,,2,0,L05861.1/5-47
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,25292,L05862.1,1,sp|L05862.1|ATSAT2I1 Ambystoma talpoideum satellite 2 repetitive element; clone pAtal 8.,0,180,5,47,26.40,UCCUCACUGAUGACGCCCAACCAGGCUGAAACAUGUCUGGGGA,****    NEW  HIT  #13  ****,,2,0,L05862.1/5-47
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,25301,L05850.1,1,sp|L05850.1|ATSAT2N Amphiuma tridactylum satellite 2 repetitive element; clone pAtri J.,0,181,5,47,24.13,ACCUCACUGAUGAUGCCCAAUGAGGCUGAAACGCGUUUGGGGU,****    NEW  HIT (duplicate of new hit #8)   ****,,2,0,L05850.1/5-47
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,25303,L05851.1,1,sp|L05851.1|ATSAT2O Amphiuma tridactylum satellite 2 repetitive element; clone pAtri F.,0,182,5,47,28.25,ACCUCACUGAUGACGCCCAAUGAGGCUGAAACGCGUCUGGGGU,****    NEW  HIT  #15  ****,,2,0,L05851.1/5-47
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,25305,L05853.1,1,sp|L05853.1|ATSAT2Q Amphiuma tridactylum satellite 2 repetitive element; clone Atricon.,0,183,5,47,28.25,ACCUCACUGAUGAUGCCCAAUGAGGCUGAAACGCGUCUGGGGU,****    NEW  HIT  #16  ****,,2,0,L05853.1/5-47
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,36016,Y17693.1,1,sp|Y17693.1|BMU17693 Bungarus multicinctus gene encoding alpha-bungarotoxin; V31 variant,1,184,1977,1931,25.64,GGCUAGCUGACGAGAGCUAAGUAGCUCGAAAUAGAUCUAUCCGAGUC,****    NEW  HIT  #17  ****,,2,0,Y17693.1/1977-1931
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,36016,Y17693.1,1,sp|Y17693.1|BMU17693 Bungarus multicinctus gene encoding alpha-bungarotoxin; V31 variant,1,185,1646,1600,25.64,GGCUAGCUGACGAGAGCUAAGUAGUUCGAAAUAGAUCUAUCCGAGUC,****    NEW  HIT  #18  ****,,2,0,Y17693.1/1646-1600
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,36017,Y17694.1,1,sp|Y17694.1|BMU17694 Bungarus multicinctus gene encoding alpha-bungarotoxin; A31 variant,1,186,1970,1924,30.56,GGCUAGCUGACGAGAGCUAAGUAGCUCGAAAUAGAUCUAUCCUAGUC,****    NEW  HIT  #19  ****,,2,0,Y17694.1/1970-1924
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,36017,Y17694.1,1,sp|Y17694.1|BMU17694 Bungarus multicinctus gene encoding alpha-bungarotoxin; A31 variant,1,187,1645,1599,25.64,GGCUAGCUGACGAGAGCUAAGUAGUUCGAAAUAGAUCUAUCCGAGUC,****    NEW  HIT (duplicate of new hit #18)   ****,,2,0,Y17694.1/1645-1599
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,36707,U37321.1,1,sp|U37321.1|CA37321 Cryptobranchus alleganiensis satellite 2 repetitive DNA element cas2hhc.,0,188,33,75,38.26,ACCCAUCUGACGAGGUCCAGAGAGACCGAAACGCGUCAUGGGU,****    NEW  HIT  #21  ****,,2,0,U37321.1/33-75
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,38500,U37316.1,1,sp|U37316.1|EL37316 Eurycea longicauda satellite 2 repetitive DNA element els2hhc.,0,189,33,75,31.61,ACCUCACUGAGGAGGCCCAACAAGGCCGAAACCGGUCUGGGGG,****    NEW  HIT  #22  ****,,2,0,U37316.1/33-75
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,44649,U37319.1,1,sp|U37319.1|NM37319 Necturus maculosus satellite 2 repetitive DNA element nms2hhc.,0,190,33,75,29.49,ACCUCACUGACGAUGCCCAAUGAGGCUGAAACGCGUCUGGGGU,****    NEW  HIT  #23  ****,,2,0,U37319.1/33-75
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,46149,U37318.1,1,sp|U37318.1|PG37318 Plethodon glutinosus satellite 2 repetitive DNA element pgs2hhc.,0,191,33,75,29.61,GCCCUACUGAUGAGGCCCAACAAGGCCGAAACCGGUCUGGGGA,****    NEW  HIT  #24  ****,,2,0,U37318.1/33-75
./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00163.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,154,AL138834.28,1,sp|AL138834.28|AL138834 Human DNA sequence from clone RP11-113A10 on chromosome 9,0,192,97514,97561,31.18,CUGCAGCUGAUGAGCUCCAAAAAGAGCGAAACCUAUUAGGUCCUGCAG,****    NEW  HIT  #25  ****,,2,0,AL138834.28/97514-97561



THINGS IN Rfam THAT WEREN'T FOUND:


# hits found that weren't in Rfam: 26 (totally new = 26, overlaps hit in Rfam = 0, overlap hits with more than 10 nucs = 0,  total # hits with 0 overlap with Rfam (ignoring sequence matching) = 26)
# Rfam hits not found: 0 (no overlap of >= 10 nucs: 0)
# Rfam seqs not found: 0 (no overlap of >= 10 nucs: too tricky to calculate)