Params: ./cmzasha --no-stderr --filter 200 24 Rfam/cm/RF00163.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00163_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00163_fwdinf_hmmtype1_advance_copy.bin Build: release Host: bicycle.cs.washington.edu pid: 18907 ----hmm-from-cmFileName: Rfam/cm/RF00163.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-greedy-node 200 24.00 Rfam/cm/RF00163.cm forward-alg-inf 100000 cycling-node cfsqp-elim-gauss 0 1 Build: release Host: recycle.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-greedy-node 200 24.00 Rfam/cm/RF00163.cm forward-alg-inf 100000 cycling-node cfsqp-elim-gauss 0 1 Build: release Host: recycle.cs.washington.edu ----hmm-from-cmFileName: ../zasha-infernal/Rfam/cm/RF00163.cm ----hmm-build-info: ;(default construction of HMM) Params: --set-input-mm-file Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf ../zasha-infernal/Rfam/cm/RF00163.cm 1 1 100000 1 Build: release Host: SERENA ;Params: --set-input-mm-file Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf ../zasha-infernal/Rfam/cm/RF00163.cm 1 1 100000 1 Build: release Host: SERENA ----cmFile: Rfam/cm/RF00163.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10954,sp|AF036389.1|AF036389 Schistosoma haematobium clone Sh1 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAACAGGACGAAACGCGCGUCAAACUGCAU hit 0 : 120 167 (fwd) 56.39 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AU:CAGCUGACGAGUCCCAAA+AGGACGAAACGC GCGUC CUG:AU 120 AUCCAGCUGACGAGUCCCAAACAGGACGAAACGC----GCGUCaaaCUGCAU 167 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10955,sp|AF036390.1|AF036390 Schistosoma haematobium clone Sh2 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAACUGACGAGUGCCCAAUAGGAGGAAACGCGCGUCAAACUGCAU hit 1 : 118 165 (fwd) 42.56 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AU:CA:CUGACGA U CC AAUAG A GAAACGC GCGUC :UG:AU 118 AUCCAACUGACGAGUGCCCAAUAGGAGGAAACGC----GCGUCaaaCUGCAU 165 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10956,sp|AF036391.1|AF036391 Schistosoma haematobium clone Sh4 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUCAAACUGCAU hit 2 : 121 168 (fwd) 47.96 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AU:CA:CUGACGA U CCAAAUAG A GAAACGC GCGUC :UG:AU 121 AUCCAACUGACGAGUGCCAAAUAGGAGGAAACGC----GCGUCaaaCUGCAU 168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10957,sp|AF036392.1|AF036392 Schistosoma haematobium clone Sh5 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAACUGACGAGCGCCAAAUAGGAGGAAACGCGCGUCAAACUGCAU hit 3 : 121 168 (fwd) 42.95 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AU:CA:CUGACGA : CCAAAUAG : GAAACGC GCGUC :UG:AU 121 AUCCAACUGACGAGCGCCAAAUAGGAGGAAACGC----GCGUCaaaCUGCAU 168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10958,sp|AF036393.1|AF036393 Schistosoma haematobium clone Sh6 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAACAGGACGAAACGAGAGUCAAACUGCAU hit 4 : 119 166 (fwd) 47.28 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AU:CAGCUGACGAGUCCCAAA+AGGACGAAAC : : GUC CUG:AU 119 AUCCAGCUGACGAGUCCCAAACAGGACGAAACGA----GAGUCaaaCUGCAU 166 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10959,sp|AF036394.1|AF036394 Schistosoma haematobium clone Sh7 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGUGUCCCAAACAGCACGAAACGCGCGUCAAACUGCAU hit 5 : 118 165 (fwd) 46.68 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AU:CAGCUGACG GU CCAAA+AG ACGAAACGC GCGUC CUG:AU 118 AUCCAGCUGACGUGUCCCAAACAGCACGAAACGC----GCGUCaaaCUGCAU 165 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10960,sp|AF036395.1|AF036395 Schistosoma haematobium clone Sh8 satellite sequence. ----isReversed: 0 ----hitSequence: CCCUGGCUGACGAGUCCCAAACAGGACGAAACGCGCGUCCUGGAU hit 6 : 119 163 (fwd) 52.88 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 :C::GCUGACGAGUCCCAAA+AGGACGAAACGC GCGUCC::G: 119 CCCUGGCUGACGAGUCCCAAACAGGACGAAACGC----GCGUCCUGGAU 163 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10961,sp|AF036396.1|AF036396 Schistosoma haematobium clone Sh9 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUCAAACUGCAG hit 7 : 121 168 (fwd) 43.34 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 U:CA:CUGACGA U CCAAAUAG A GAAACGC GCGUC :UG:A 121 AUCCAACUGACGAGUGCCAAAUAGGAGGAAACGC----GCGUCaaaCUGCAG 168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10962,sp|AF036397.1|AF036397 Schistosoma haematobium clone Sh10 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAACAGCACGAAACGCGCGUCAAACUGCAU hit 8 : 119 166 (fwd) 51.63 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AU:CAGCUGACGAGU CCAAA+AG ACGAAACGC GCGUC CUG:AU 119 AUCCAGCUGACGAGUCCCAAACAGCACGAAACGC----GCGUCaaaCUGCAU 166 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10963,sp|AF036398.1|AF036398 Schistosoma haematobium clone Sh12 satellite sequence. ----isReversed: 0 ----hitSequence: AUCUUUCUGACGAGUUUCAAAUAGGACGAAACGCGUGUCAUGGAU hit 9 : 58 102 (fwd) 47.50 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUC: :CUGACGAGU::CAAAUA::ACGAAAC C G GUC: :GAU 58 AUCUUUCUGACGAGUUUCAAAUAGGACGAAACGC----GUGUCAUGGAU 102 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10964,sp|AF036399.1|AF036399 Schistosomatium douthitti clone Sd1 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUCCUGGAU hit 10 : 123 167 (fwd) 57.71 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGU CCAAAUAG ACGAAA:GC GC:UCCUGGAU 123 AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGC----GCAUCCUGGAU 167 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10965,sp|AF036400.1|AF036400 Schistosomatium douthitti clone Sd2 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGUGCAUCCUGGAU hit 11 : 123 167 (fwd) 55.17 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGU CCAAAUAG ACGAAA:G: :C:UCCUGGAU 123 AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGU----GCAUCCUGGAU 167 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10966,sp|AF036401.1|AF036401 Schistosomatium douthitti clone Sd3 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGACGAAAUGCGCAUCCUGGAU hit 12 : 123 167 (fwd) 61.28 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUCCCAAAUAGGACGAAA:GC GC:UCCUGGAU 123 AUCCAGCUGACGAGUCCCAAAUAGGACGAAAUGC----GCAUCCUGGAU 167 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10967,sp|AF036402.1|AF036402 Schistosomatium douthitti clone Sd4 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUGCCAAAUACGACGAAAUGCGCAUCCUGGAU hit 13 : 123 167 (fwd) 52.53 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGU CAAAUA ACGAAA:GC GC:UCCUGGAU 123 AUCCAGCUGACGAGUGCCAAAUACGACGAAAUGC----GCAUCCUGGAU 167 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10969,sp|AF036404.1|AF036404 Schistosomatium douthitti clone Sd6 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUCCUGGAU hit 14 : 122 166 (fwd) 57.71 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGU CCAAAUAG ACGAAA:GC GC:UCCUGGAU 122 AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGC----GCAUCCUGGAU 166 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11099,sp|AF036739.1|AF036739 Schistosoma mansoni clone Sm1 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUCCUGGAU hit 15 : 118 162 (fwd) 65.54 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC GCGUCCUGGAU 118 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC----GCGUCCUGGAU 162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11100,sp|AF036740.1|AF036740 Schistosoma mansoni clone Sm3 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUCACGAGUCCCAAAUAGGACGAAACGCGUCCUCCAU hit 16 : 117 159 (fwd) 44.94 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AU: AGCU ACGAGUCCCAAAUAGGACGAAACG CGUCCU :AU 117 AUCCAGCUCACGAGUCCCAAAUAGGACGAAACG------CGUCCUCCAU 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11101,sp|AF036741.1|AF036741 Schistosoma mansoni clone Sm4 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCCGACGAGUCCCAAAUAAAACGAAACGCGCGUCAAAGUGGAU hit 17 : 118 165 (fwd) 44.94 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AUCCA C GACGAGU::CAAAUA::ACGAAACGC GCGUC UGGAU 118 AUCCAGCCGACGAGUCCCAAAUAAAACGAAACGC----GCGUCaaaGUGGAU 165 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11102,sp|AF036742.1|AF036742 Schistosoma mansoni clone Sm5 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUCCUGGAU hit 18 : 118 162 (fwd) 65.54 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC GCGUCCUGGAU 118 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC----GCGUCCUGGAU 162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11103,sp|AF036743.1|AF036743 Schistosoma mansoni clone Sm6 satellite sequence. ----isReversed: 0 ----hitSequence: AUUCAGCUGACGAGUCCCAAAUAGGACGAAGUGACGCGCGUCCUGGAU hit 19 : 118 165 (fwd) 53.33 bits ((((((,,,,,,,<<<<______>>>>,,,...<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAA...ACgcACGAgcGUCcuggAu 49 AU:CAGCUGACGAGUCCCAAAUAGGACGAA ACGC GCGUCCUG:AU 118 AUUCAGCUGACGAGUCCCAAAUAGGACGAAgugACGC----GCGUCCUGGAU 165 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11104,sp|AF036744.1|AF036744 Schistosoma mansoni clone Sm7 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUCCUGGAU hit 20 : 118 162 (fwd) 65.54 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC GCGUCCUGGAU 118 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC----GCGUCCUGGAU 162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11105,sp|AF036745.1|AF036745 Schistosoma mansoni clone Sm8 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAACUGACCAGUCGGAAAUAGGACGAAACGCGCGUCCAGGAU hit 21 : 119 163 (fwd) 48.34 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCC :CUGAC AGUC AAAUA GACGAAACGC GCGUC: GGAU 119 AUCCAACUGACCAGUCGGAAAUAGGACGAAACGC----GCGUCCAGGAU 163 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11106,sp|AF036746.1|AF036746 Schistosoma mansoni clone Sm9 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACCAGUCGGAAAUAGGACGAAACGCGCGUCCUGGAU hit 22 : 113 157 (fwd) 53.25 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGAC AGUC AAAUA GACGAAACGC GCGUCCUGGAU 113 AUCCAGCUGACCAGUCGGAAAUAGGACGAAACGC----GCGUCCUGGAU 157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11107,sp|AF036747.1|AF036747 Schistosoma mansoni clone Sm10 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGCGAAACGCGCGUCCUGGAU hit 23 : 117 160 (fwd) 55.01 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUCCCAAAUAGG CGAAACGC GCGUCCUGGAU 117 AUCCAGCUGACGAGUCCCAAAUAGG-CGAAACGC----GCGUCCUGGAU 160 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11108,sp|AF036748.1|AF036748 Schistosoma mansoni clone Sm12 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCUAAAUAGGGUGAAACGCGCGUCCUGGAU hit 24 : 120 164 (fwd) 54.24 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGA CC AAAUAGG GAAACGC GCGUCCUGGAU 120 AUCCAGCUGACGAGUCCUAAAUAGGGUGAAACGC----GCGUCCUGGAU 164 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11109,sp|AF036749.1|AF036749 Schistosoma mansoni clone Sm13 satellite sequence. ----isReversed: 0 ----hitSequence: AUUAACAGACGAGUCCCAAAUAGGACGAAGUGACGCGCGUCCUGGAU hit 25 : 121 167 (fwd) 37.50 bits ((((((,,,,,,,<<<<______>>>>,,,...<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAA...ACgcACGAgcGUCcuggAu 49 AU: A:C GACGAGUCCCAAAUAGGACGAA ACGC GCGUC:UG:AU 121 AUU-AACAGACGAGUCCCAAAUAGGACGAAgugACGC----GCGUCCUGGAU 167 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11110,sp|AF036750.1|AF036750 Schistosoma mansoni clone Sm14 satellite sequence. ----isReversed: 0 ----hitSequence: AUCUAGCUGACGAGUCCCAAAUAGGACGAAAUCGCGUCAAACUGGAU hit 26 : 119 165 (fwd) 45.80 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AUC:AGCUGACGAGUCCCAAAUAGGACGAAA: C GC:UC CU:GAU 119 AUCUAGCUGACGAGUCCCAAAUAGGACGAAAU-C----GCGUCaaaCUGGAU 165 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11111,sp|AF036751.1|AF036751 Schistosoma mansoni clone Sm15 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGACGAACGCACUUCCUAGAU hit 27 : 118 161 (fwd) 49.10 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUC:AGCUGACGAGUCCCAAAUAGGACGA A+G+ +C+UCCU:GAU 118 AUCCAGCUGACGAGUCCCAAAUAGGACGA-ACGC----ACUUCCUAGAU 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11112,sp|AF036752.1|AF036752 Schistosoma mansoni clone Sm16 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGACUUGACGCGCGUCCUGGAU hit 28 : 118 162 (fwd) 51.85 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUCCCAAAUAGGAC ACGC GCGUCCUGGAU 118 AUCCAGCUGACGAGUCCCAAAUAGGACUUGACGC----GCGUCCUGGAU 162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11113,sp|AF036753.1|AF036753 Schistosoma mansoni clone Sm17 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACCGUCGGAAAUAGGACGAAACGCGCGUCCUGGAU hit 29 : 118 161 (fwd) 43.59 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGAC GUC AAAUA GACGAAACGC GCGUCCUGGAU 118 AUCCAGCUGACC-GUCGGAAAUAGGACGAAACGC----GCGUCCUGGAU 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11114,sp|AF036754.1|AF036754 Schistosoma mansoni clone Sm18 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGUUGACGAGUCCCAAAUUGGACGAAACGCGCGUCAAACUGGAU hit 30 : 91 138 (fwd) 50.25 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AUCCAG UGACGAGUCCCAAAU GGACGAAACGC GCGUC CUGGAU 91 AUCCAGUUGACGAGUCCCAAAUUGGACGAAACGC----GCGUCaaaCUGGAU 138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11115,sp|AF036755.1|AF036755 Schistosoma mansoni clone Sm19 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCNGCUGACGNGUCCCAAAUAGGACGGAAGGCGCGUCCCGGAU hit 31 : 118 162 (fwd) 48.22 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCC GCUGACG GUCCCAAAUAGGACG AA GC GC UCC GGAU 118 AUCCNGCUGACGNGUCCCAAAUAGGACGGAAGGC----GCGUCCCGGAU 162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11116,sp|AF036756.1|AF036756 Schistosoma mansoni clone Sm20 satellite sequence. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAGUAGGACGAAACGCGCGUCCUGGAU hit 32 : 118 162 (fwd) 63.00 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUCCCAA UAGGACGAAACGC GCGUCCUGGAU 118 AUCCAGCUGACGAGUCCCAAGUAGGACGAAACGC----GCGUCCUGGAU 162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16307,sp|AF109181.1|AF109181 Schistosoma mansoni SPO-1 protein (SPO-1) gene, complete cds. ----isReversed: 1 ----hitSequence: GCAAUACUGAAGAGUUCCACAAUAGGACGAAACGGCGAUCCAGUGU hit 33 : 634 589 (rev) 35.50 bits ((((((,,,,,,,<<<<__.____>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCA.AAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::::::CUGA+GAGU:CCA AAUAG:ACGAAA :: :: UC:::::: 3223 GCAAUACUGAAGAGUUCCAcAAUAGGACGAAACGG----CGAUCCAGUGU 3268 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #25905,sp|AF213692.1|AF213692 Schistosoma japonicum Sj-alpha-1 retroposon-like sequence. ----isReversed: 0 ----hitSequence: AUCCAGCCGAUGAGUUCCAAACAGGACUAAACGCGCUUCUUGGAU hit 34 : 353 397 (fwd) 48.09 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCA C GA GAGU:CCAAA+AG:AC AAA+GC GC+UC UGGAU 353 AUCCAGCCGAUGAGUUCCAAACAGGACUAAACGC----GCUUCUUGGAU 397 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #25905,sp|AF213692.1|AF213692 Schistosoma japonicum Sj-alpha-1 retroposon-like sequence. ----isReversed: 1 ----hitSequence: AUCCAUGCGAUGAGUUUCAAAUAGGACAAAACGCAUCCUGGAU hit 35 : 222 180 (rev) 27.19 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCA: GA GAGU::CAAAUA::AC AAA G C UC:UGGAU 309 AUCCAUGCGAUGAGUUUCAAAUAGGACAAAACG------CAUCCUGGAU 351 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #25906,sp|AF213693.1|AF213693 Schistosoma japonicum Sj-alpha-2 retroposon-like sequence. ----isReversed: 0 ----hitSequence: AUCCAACCGAUGAGUCCCAAAUAGAACGAAACCUGCGUCCUGGAU hit 36 : 184 228 (fwd) 49.62 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCA:C GA GAGU:CCAAAUAG:ACGAAAC : : GUC:UGGAU 184 AUCCAACCGAUGAGUCCCAAAUAGAACGAAACCU----GCGUCCUGGAU 228 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #47513,sp|AF442688.1|AF442688 Trichobilharzia regenti Sau3A repeated sequence. ----isReversed: 0 ----hitSequence: GUACUGCCGAUGAUUCCCAAACUAGAUGAAACAGCAGCUGUCCAGUAC hit 37 : 302 349 (fwd) 29.18 bits ((((((,,,,,,,<<<<______>>>>,,,<<.<<____>>.>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAAC.gcACGAgc.GUCcuggAu 49 :U:C:GC GA GA:UC:CAAA+ :GA:GAAAC GCA GC GUCC:G:A: 302 GUACUGCCGAUGAUUCCCAAACUAGAUGAAACaGCA---GCuGUCCAGUAC 349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #16801,sp|AY028787.1|AY028787 Schistosoma mansoni FTZ-F1 nuclear receptor-like protein (ftz-f1) gene, complete cds, alternatively spliced. ----isReversed: 0 ----hitSequence: UCCUUGCUGACGAGUAUUAGCUAGCACGAAACUUACGUCCAGGGU hit 38 : 14871 14915 (fwd) 27.81 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 :C::GCUGACGAGU:: A UA::ACGAAAC : : GUCC::G: 14871 UCCUUGCUGACGAGUAUUAGCUAGCACGAAACUU----ACGUCCAGGGU 14915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #16801,sp|AY028787.1|AY028787 Schistosoma mansoni FTZ-F1 nuclear receptor-like protein (ftz-f1) gene, complete cds, alternatively spliced. ----isReversed: 0 ----hitSequence: AUUUAGCUGACGAGUCCCAAACGGUACGAAACUGGCGUCCUUGAU hit 39 : 23621 23665 (fwd) 45.24 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AU::AGCUGACGAGU CCAAA+ G ACGAAAC GUCCU::AU 23621 AUUUAGCUGACGAGUCCCAAACGGUACGAAACUG----GCGUCCUUGAU 23665 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5721,sp|Z69697.1|DSBDOPCR1 D.schiavazzii satellite DNA (clone bdopcr1) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACUGAAAGUGUCGACUCUACGGGGC hit 40 : 341 389 (fwd) 34.41 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GA ::C+ AG:: GAAA:::+CGA:::U C:GG:: 341 GCCCCGCUGAUGAGGUCAGGGAAGACUGAAAGUGUCGACUCUACGGGGC 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5722,sp|Z69699.1|DSBDOPCR2 D.schiavazzii satellite DNA (clone bdopcr2) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACAGGGC hit 41 : 341 389 (fwd) 35.04 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C GG:: 341 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACAGGGC 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5723,sp|Z69698.1|DSBDOPCR3 D.schiavazzii satellite DNA (clone bdopcr3) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC hit 42 : 341 389 (fwd) 38.91 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:GG:: 341 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5724,sp|Z69700.1|DSBDOPCR4 D.schiavazzii satellite DNA (clone bdopcr4) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAAACCGAAAGUGUCGACUCUACGGGGC hit 43 : 341 389 (fwd) 34.96 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG:::+ A:::CGAAA:::+CGA:::U C:GG:: 341 GCCCCGCUGAUGAGGUCAGGGAAAACCGAAAGUGUCGACUCUACGGGGC 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5725,sp|Z69701.1|DSBDOPCR5 D.schiavazzii satellite DNA (clone bdopcr5) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCAACGGGGC hit 44 : 341 389 (fwd) 33.46 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAA :::+CGA::: C:GG:: 341 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCAACGGGGC 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5726,sp|Z69702.1|DSBDOPCR6 D.schiavazzii satellite DNA (clone bdopcr6) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC hit 45 : 341 389 (fwd) 38.91 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:GG:: 341 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5727,sp|Z69703.1|DSBDOPCR7 D.schiavazzii satellite DNA (clone bdopcr7) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC hit 46 : 343 391 (fwd) 38.91 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:GG:: 343 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC 391 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5736,sp|Z69704.1|DSBDPCR1B D.schiavazzii satellite DNA (clone bdopcr1) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACUGAAAGUGUCGACUCUACGGGGC hit 47 : 341 389 (fwd) 34.41 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GA ::C+ AG:: GAAA:::+CGA:::U C:GG:: 341 GCCCCGCUGAUGAGGUCAGGGAAGACUGAAAGUGUCGACUCUACGGGGC 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5759,sp|Z69691.1|DSCPSPCR1 D.schiavazzii satellite DNA (clone cpspcr1) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC hit 48 : 342 390 (fwd) 38.91 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:GG:: 342 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC 390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5760,sp|Z69692.1|DSCPSPCR2 D.schiavazzii satellite DNA (clone cpspcr2) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC hit 49 : 343 391 (fwd) 38.91 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:GG:: 343 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC 391 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5761,sp|Z69693.1|DSCPSPCR3 D.schiavazzii satellite DNA (clone cpspcr3) ----isReversed: 0 ----hitSequence: GCCCUGCUGAUGAGGUCAGGGAAGACUGAAAGUGUCGACUCUACGGGGC hit 50 : 343 391 (fwd) 30.54 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC GCUGA GA ::C+ AG:: GAAA:::+CGA:::U C GG:: 343 GCCCUGCUGAUGAGGUCAGGGAAGACUGAAAGUGUCGACUCUACGGGGC 391 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5762,sp|Z69694.1|DSCPSPCR4 D.schiavazzii satellite DNA (clone cpspcr4) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGUGC hit 51 : 342 390 (fwd) 35.90 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 :: C:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:G :: 342 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGUGC 390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5763,sp|Z69695.1|DSCPSPCR5 D.schiavazzii satellite DNA (clone cpspcr5) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC hit 52 : 345 393 (fwd) 38.91 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:GG:: 345 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC 393 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5764,sp|Z69696.1|DSCPSPCR6 D.schiavazzii satellite DNA (clone cpspcr6) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC hit 53 : 341 389 (fwd) 38.91 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:GG:: 341 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6267,sp|Z69685.1|DSVETPCR1 D.schiavazzii satellite DNA (clone vetpcr1) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC hit 54 : 342 390 (fwd) 38.91 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:GG:: 342 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC 390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6268,sp|Z69686.1|DSVETPCR2 D.schiavazzii satellite DNA (clone vetpcr2) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGACUCUACGGGGC hit 55 : 342 390 (fwd) 36.57 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+ GA:::U C:GG:: 342 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGACUCUACGGGGC 390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6269,sp|Z69688.1|DSVETPCR3 D.schiavazzii satellite DNA (clone vetpcr3) ----isReversed: 0 ----hitSequence: GCGCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUAUGGGGC hit 56 : 265 313 (fwd) 31.75 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 :: C: CUGA GAG::C+ AG::CGAAA:::+CGA:::U :G :: 265 GCGCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUAUGGGGC 313 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6270,sp|Z69689.1|DSVETPCR4 D.schiavazzii satellite DNA (clone vetpcr4) ----isReversed: 0 ----hitSequence: GCCCCGCUGGUGGGGUCAGGGAAGGCCGAAAGUGUCGACUCUACGGGGC hit 57 : 341 389 (fwd) 29.82 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUG G G::C+ AG::CGAAA:::+CGA:::U C:GG:: 341 GCCCCGCUGGUGGGGUCAGGGAAGGCCGAAAGUGUCGACUCUACGGGGC 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6271,sp|Z69690.1|DSVETPCR5 D.schiavazzii satellite DNA (clone vetpcr5) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC hit 58 : 342 390 (fwd) 38.91 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+CGA:::U C:GG:: 342 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGACUCUACGGGGC 390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6276,sp|Z69687.1|DSVTPCR2B D.schiavazzii satellite DNA (clone vetpcr2) ----isReversed: 0 ----hitSequence: GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGACUCUACGGGGC hit 59 : 342 390 (fwd) 36.57 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::CC:GCUGA GAG::C+ AG::CGAAA:::+ GA:::U C:GG:: 342 GCCCCGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGACUCUACGGGGC 390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19925,sp|S80278.1|S80278 {tandem repetitive sequence} [Opisthorchis viverrini, Genomic, 333 nt]. ----isReversed: 0 ----hitSequence: GCCUACCUGAUAGCCCCGAGAAGGGCGAAACCGGUCGUGGGC hit 60 : 127 168 (fwd) 24.39 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::C:A:CUGA AG:CCC A AGG:CGAAAC C G GUC:U:G:: 127 GCCUACCUGAU-AGCCCCGAGAAGGGCGAAAC-C----G-GUCGUGGGC 168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20744,sp|U12442.1|SM12442 Schistosoma mansoni OZ.A female-specific retroposon SMAlphafem-1 repeat region. ----isReversed: 0 ----hitSequence: AUCCAGAUGGUCAGUGGCAAAUCGAACGAAACACGCAUCCUGCAU hit 61 : 241 285 (fwd) 26.51 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AU:CAG UG AGU CAAAU ACGAAA :C G: UCCUG:AU 241 AUCCAGAUGGUCAGUGGCAAAUCGAACGAAACAC----GCAUCCUGCAU 285 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20854,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: GCACUGCUGAGGAGUCCCACAAUAGGACGAAACGACCGUCCAGUAC hit 62 : 743 788 (fwd) 47.09 bits ((((((,,,,,,,<<<<__.____>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCA.AAUAGGACGAAACgcACGAgcGUCcuggAu 49 :::C:GCUGA GAGUCCCA AAUAGGACGAAACG: :CGUCC:G::: 743 GCACUGCUGAGGAGUCCCAcAAUAGGACGAAACGA----CCGUCCAGUAC 788 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20854,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: AUCCAGUUGAUGAGUCCCAGAGAAGGACGAAACGUGCAUCCUGGAU hit 63 : 1479 1524 (fwd) 43.51 bits ((((((,,,,,,,<<<<__.____>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCA.AAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAG UGA GAGUCCCA A AGGACGAAA G: :C UCCUGGAU 1479 AUCCAGUUGAUGAGUCCCAgAGAAGGACGAAACGU----GCAUCCUGGAU 1524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20854,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: CAAUUGCUGAGGAGUCCCAUAAUAGGACGAAACGGCCGUCCAGUGC hit 64 : 2147 2192 (fwd) 44.65 bits ((((((,,,,,,,<<<<__.____>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCA.AAUAGGACGAAACgcACGAgcGUCcuggAu 49 :::GCUGA GAGUCCCA AAUAGGACGAAACG: :CGUCC::: 2147 CAAUUGCUGAGGAGUCCCAuAAUAGGACGAAACGG----CCGUCCAGUGC 2192 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20855,sp|D87493.1|SMD493 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: GCACUUCUGAAGAGUCCCAUGCUAGGACGAAACAGCCUUCCAGUAC hit 65 : 3564 3609 (fwd) 34.54 bits ((((((,,,,,,,<<<<__.____>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCA.AAUAGGACGAAACgcACGAgcGUCcuggAu 49 :::C::CUGA+GAGUCCCA UAGGACGAAA+:: ::+UC::G::: 3564 GCACUUCUGAAGAGUCCCAuGCUAGGACGAAACAG----CCUUCCAGUAC 3609 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20889,sp|L23117.1|SMGLUSTRB Schistosoma mansoni glutathione S-transferase gene, protein bind region. ----isReversed: 0 ----hitSequence: CGACUGCUGAGGAGUCCCACAAUAGGGCGAUACGGACGUCCAGUGC hit 66 : 1024 1069 (fwd) 35.67 bits ((((((,,,,,,,<<<<__.____>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCA.AAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::C:GCUGA GAG CCCA AAUAGG CGA ACG CGUCC:G:: 1024 CGACUGCUGAGGAGUCCCAcAAUAGGGCGAUACGG----ACGUCCAGUGC 1069 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20895,sp|M98271.1|SMGSTM Schistosoma mansoni 28 kDa glutathione S-transferase (GST) gene, complete cds. ----isReversed: 0 ----hitSequence: CGACUGCUGAGGAGUCCCACAAUAGGGCGAUACGGACGUCCAGUGC hit 67 : 8 53 (fwd) 35.67 bits ((((((,,,,,,,<<<<__.____>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCA.AAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::C:GCUGA GAG CCCA AAUAGG CGA ACG CGUCC:G:: 8 CGACUGCUGAGGAGUCCCAcAAUAGGGCGAUACGG----ACGUCCAGUGC 53 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20942,sp|L07513.1|SMMTEGANT Schistosoma mansoni major tegumental antigen SM15 (GSM70) gene, complete cds. ----isReversed: 0 ----hitSequence: AUCUAGCUGACGAGUCCCGAAUAGGAGGAAGUGCUCGUUCAAUAU hit 68 : 246 290 (fwd) 38.24 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AU : GCUGACGA UCCC AAUAGGA GAA::G C:: C : AU 246 AUCUAGCUGACGAGUCCCGAAUAGGAGGAAGUGC----UCGUUCAAUAU 290 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20942,sp|L07513.1|SMMTEGANT Schistosoma mansoni major tegumental antigen SM15 (GSM70) gene, complete cds. ----isReversed: 1 ----hitSequence: AUCUAAAUGACGAGUCCUAAAUGGAACUAAACACAUGUGUUUGAU hit 69 : 84 40 (rev) 34.37 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUC:A: UGACGAGU:C AAAU G:AC AAAC:+ +:GU :U:GAU 4617 AUCUAAAUGACGAGUCCUAAAUGGAACUAAACAC----AUGUGUUUGAU 4661 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20962,sp|X15619.1|SMRED1 Schistosoma mansoni repetitive DNA element d-1 of SM(alpha) family ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUCAAAAUGCAU hit 70 : 121 168 (fwd) 49.65 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AU:CA CUGACGAGUCCCAAAUAGGACGAAACG CGUC UG:AU 121 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC----UCGUCaaaAUGCAU 168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20963,sp|X15620.1|SMRED2 Schistosoma mansoni repetitive DNA element d-2 of SM(alpha) family ----isReversed: 0 ----hitSequence: GGCUAGCAGUGGAAUCCAAAUAGGACGAAACGCGCGUCCUGGAU hit 71 : 19 62 (fwd) 36.02 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::C:AGC G GA:UCC AAAUAGGA:GAAACGC GCGUCCU:G:: 19 GGCUAGCAGUGGAAUCC-AAAUAGGACGAAACGC----GCGUCCUGGAU 62 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20964,sp|X15621.1|SMRED3 Schistosoma mansoni repetitive DNA element d-3 of SM(alpha) family ----isReversed: 0 ----hitSequence: ACUCCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUCCUAGAU hit 72 : 101 144 (fwd) 32.51 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 A::::G UGAC AGUC:C AAUA:GACGAAA:G: :C:UCC::::U 101 ACUCCG-UGACAAGUCUCGAAUAGGACGAAAUGU----GCGUCCUAGAU 144 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20964,sp|X15621.1|SMRED3 Schistosoma mansoni repetitive DNA element d-3 of SM(alpha) family ----isReversed: 1 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAAGACGAACGCGCGUCUGGAU hit 73 : 76 34 (rev) 46.03 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUC:CAAAUA:GACGA ACGC GCGU CUGGAU 218 AUCCAGCUGACGAGUCCCAAAUAAGACGA-ACGC----GCGU-CUGGAU 260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20966,sp|X15618.1|SMRET2 Schistosoma mansoni repetitive DNA element t-2 of SM(alpha) family ----isReversed: 0 ----hitSequence: AUCCAACUGACCAGUCGGAAAUUGGACGAAACGCGCGUCCUGGAU hit 74 : 136 180 (fwd) 46.31 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCA:CUGAC AGUC AAAU GACGAAACGC GCGUC:UGGAU 136 AUCCAACUGACCAGUCGGAAAUUGGACGAAACGC----GCGUCCUGGAU 180 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20976,sp|M27676.1|SMRSRLA S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUCCUGGAU hit 75 : 133 177 (fwd) 65.54 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC GCGUCCUGGAU 133 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC----GCGUCCUGGAU 177 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20977,sp|M27677.1|SMRSRLB S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: AUCCAACUGACCAGUCGGAAAUUGGACGAAACGCGCGUCCUGGAU hit 76 : 136 180 (fwd) 46.31 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCA:CUGAC AGUC AAAU GACGAAACGC GCGUC:UGGAU 136 AUCCAACUGACCAGUCGGAAAUUGGACGAAACGC----GCGUCCUGGAU 180 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20978,sp|M27678.1|SMRSRLC S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUCAAAAUGCAU hit 77 : 121 168 (fwd) 49.65 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,...)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC...cuggAu 49 AU:CA CUGACGAGUCCCAAAUAGGACGAAACG CGUC UG:AU 121 AUCCAGCUGACGAGUCCCAAAUAGGACGAAACGC----UCGUCaaaAUGCAU 168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20979,sp|M27679.1|SMRSRLD S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: GGCUAGCAGUGGAAUCCAAAUAGGACGAAACGCGCGUCCUGGAU hit 78 : 19 62 (fwd) 36.02 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 ::C:AGC G GA:UCC AAAUAGGA:GAAACGC GCGUCCU:G:: 19 GGCUAGCAGUGGAAUCC-AAAUAGGACGAAACGC----GCGUCCUGGAU 62 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20980,sp|M27680.1|SMRSRLE S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: ACUCCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUCCUAGAU hit 79 : 101 144 (fwd) 32.51 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 A::::G UGAC AGUC:C AAUA:GACGAAA:G: :C:UCC::::U 101 ACUCCG-UGACAAGUCUCGAAUAGGACGAAAUGU----GCGUCCUAGAU 144 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20980,sp|M27680.1|SMRSRLE S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 1 ----hitSequence: AUCCAGCUGACGAGUCCCAAAUAAGACGAACGCGCGUCUGGAU hit 80 : 76 34 (rev) 46.03 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCAGCUGACGAGUC:CAAAUA:GACGA ACGC GCGU CUGGAU 218 AUCCAGCUGACGAGUCCCAAAUAAGACGA-ACGC----GCGU-CUGGAU 260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20983,sp|M19148.1|SMSATA S.mansoni satellite DNA repeat. ----isReversed: 0 ----hitSequence: AUCCAACUGACCAGUCGGAAAUUGGACGAAACGCGCGUCCUGGAU hit 81 : 160 204 (fwd) 46.31 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 AUCCA:CUGAC AGUC AAAU GACGAAACGC GCGUC:UGGAU 160 AUCCAACUGACCAGUCGGAAAUUGGACGAAACGC----GCGUCCUGGAU 204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5427,sp|AC112791.3|AC112791 Mus musculus chromosome 13 clone RP23-182O1, complete sequence. ----isReversed: 0 ----hitSequence: UUCCUGAGAAGAGAGCAAGACAGAUCGAAACUGGAGUCCUACAC hit 82 : 198183 198226 (fwd) 24.64 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 U:: G GA+GAG: C+A A+AG :CGAAAC: :GUCC ::A 198183 UUCCUG-AGAAGAGAGCAAGACAGAUCGAAACUG----GAGUCCUACAC 198226 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #18966,sp|AF320600.1|AF320600 Mus musculus NKR-P1F (Nkrp1f) gene, exons 2-6, and C lectin-related protein A gene, complete cds. ----isReversed: 0 ----hitSequence: ACUGUACUGAUGAGUCCCAAAAAGGACGAAAUAACAGUUCACAAA hit 83 : 23589 23633 (fwd) 29.04 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 :: ::CUGA GAGUCCCAAA AGGACGAAA: : : :U :: :: 23589 ACUGUACUGAUGAGUCCCAAAAAGGACGAAAUAA----CAGUUCACAAA 23633 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26083,sp|AL773539.18|AL773539 Mouse DNA sequence from clone RP23-9F18 on chromosome 4 ----isReversed: 0 ----hitSequence: CUGCAGCUGAUGAGCUCCAAAAAGAGCGAAACCUGUUGGGUCCUGCAG hit 84 : 161571 161618 (fwd) 31.04 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____...>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGA...gcGUCcuggAu 49 :U CAGCUGA GAG::CCAAA AG::CGAAAC : : GUCCUG A: 161571 CUGCAGCUGAUGAGCUCCAAAAAGAGCGAAACCU----guuGGGUCCUGCAG 161618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26661,sp|AL844845.7|AL844845 Mouse DNA sequence from clone RP23-155C1 on chromosome 2 ----isReversed: 0 ----hitSequence: CCAUUCCACAAGAGACCCAAACAGGUCUAAAAGUACCAGCCUCUGAGUUG hit 85 : 42315 42364 (fwd) 24.27 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,.)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUC.cuggAu 49 ::::::C A+GAG:CCCAAA+AGG:C AAA:G:AC A:C:UC :::::: 42315 CCAUUCCACAAGAGACCCAAACAGGUCUAAAAGUACCAGCCUCuGAGUUG 42364 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #49015,sp|BC051091.1|BC051091 Mus musculus, Similar to C lectin-related protein A, clone MGC:59011 IMAGE:6529908, mRNA, complete cds. ----isReversed: 0 ----hitSequence: ACUGUACUGAUGAGUCCCAAAAAGGACGAAAUAACAGUUCACAAA hit 86 : 1473 1517 (fwd) 29.04 bits ((((((,,,,,,,<<<<______>>>>,,,<<<<____>>>>,)))))) 1 aUccagCUGAcGAGUCCCAAAUAGGACGAAACgcACGAgcGUCcuggAu 49 :: ::CUGA GAGUCCCAAA AGGACGAAA: : : :U :: :: 1473 ACUGUACUGAUGAGUCCCAAAAAGGACGAAAUAA----CAGUUCACAAA 1517 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50181,sp|AF229815.1|AF229815 Avocado sunblotch viroid Sc isolate CF1, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG hit 87 : 178 64 (rev) 42.03 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U: ::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC:: :A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGCAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50182,sp|AF229816.1|AF229816 Avocado sunblotch viroid Sc isolate CF2, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 88 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50183,sp|AF229817.1|AF229817 Avocado sunblotch viroid Sc isolate CF3, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 89 : 177 63 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50184,sp|AF229818.1|AF229818 Avocado sunblotch viroid Sc isolate CF4, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 90 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50185,sp|AF229819.1|AF229819 Avocado sunblotch viroid Sc isolate CF5, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 91 : 177 63 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50186,sp|AF229820.1|AF229820 Avocado sunblotch viroid B isolate CF6, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 92 : 180 64 (rev) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagaucgaagacgagugaacuaauuuuuuuuaa 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50187,sp|AF229821.1|AF229821 Avocado sunblotch viroid B isolate CF7, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 93 : 180 64 (rev) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50188,sp|AF229822.1|AF229822 Avocado sunblotch viroid B isolate CF8, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 94 : 179 64 (rev) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50189,sp|AF229823.1|AF229823 Avocado sunblotch viroid B isolate CF9, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 95 : 180 64 (rev) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaaa 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50190,sp|AF229824.1|AF229824 Avocado sunblotch viroid B isolate CF10, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 96 : 180 64 (rev) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50191,sp|AF229825.1|AF229825 Avocado sunblotch viroid Sc isolate CF11, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 97 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 71 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 130 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 131 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50192,sp|AF229826.1|AF229826 Avocado sunblotch viroid Sc isolate CF12, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 98 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50193,sp|AF229827.1|AF229827 Avocado sunblotch viroid Sc isolate CF13, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 99 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #50194,sp|AF229828.1|AF229828 Avocado sunblotch viroid Sc isolate CF14, complete sequence. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 100 : 177 63 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75382,sp|AF404029.1|AF404029 Avocado sunblotch viroid isolate CF15, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUCUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG hit 101 : 178 64 (rev) 42.03 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U: ::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuucuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC:: :A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGCAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75383,sp|AF404030.1|AF404030 Avocado sunblotch viroid isolate CF16, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG hit 102 : 178 64 (rev) 42.03 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U: ::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC:: :A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGCAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75384,sp|AF404031.1|AF404031 Avocado sunblotch viroid isolate CF17, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACAACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCGAG hit 103 : 70 184 (fwd) 40.77 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U: ::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC:: :A: 130 aaaaguucaccacaacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGCGAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75385,sp|AF404032.1|AF404032 Avocado sunblotch viroid isolate CF18, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGACCAG hit 104 : 170 55 (rev) 32.87 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U :::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))).)) 20 ............................AAUAGGACGAAACgcACGAgcGUCcugg.Au 49 A+A:G:CGAAAC:CA G:GUC::: A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGACcAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75386,sp|AF404033.1|AF404033 Avocado sunblotch viroid isolate CF19, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUCCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 105 : 70 184 (fwd) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguccaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75387,sp|AF404034.1|AF404034 Avocado sunblotch viroid isolate CF20, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 106 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75388,sp|AF404035.1|AF404035 Avocado sunblotch viroid isolate CF21, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 107 : 70 186 (fwd) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuua 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 auaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75389,sp|AF404036.1|AF404036 Avocado sunblotch viroid isolate CF22, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGGCGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 108 : 70 184 (fwd) 40.22 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGGCGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75390,sp|AF404037.1|AF404037 Avocado sunblotch viroid isolate CF23, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 109 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75391,sp|AF404038.1|AF404038 Avocado sunblotch viroid isolate CF24, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 110 : 70 185 (fwd) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75392,sp|AF404039.1|AF404039 Avocado sunblotch viroid isolate CF25, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 111 : 70 184 (fwd) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75393,sp|AF404040.1|AF404040 Avocado sunblotch viroid isolate CF26, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 112 : 70 186 (fwd) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuua 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 auaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75394,sp|AF404041.1|AF404041 Avocado sunblotch viroid isolate CF27, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 113 : 70 183 (fwd) 44.39 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaua 129 ...........................____>>>>,,,<<<<____>>>>,)))))) 20 ...........................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75395,sp|AF404042.1|AF404042 Avocado sunblotch viroid isolate CF28, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 114 : 177 63 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75396,sp|AF404043.1|AF404043 Avocado sunblotch viroid isolate CF29, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 115 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75397,sp|AF404044.1|AF404044 Avocado sunblotch viroid isolate CF30, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG hit 116 : 70 184 (fwd) 42.03 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U: ::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC:: :A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGCAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75398,sp|AF404045.1|AF404045 Avocado sunblotch viroid isolate CF31, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 117 : 70 184 (fwd) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75399,sp|AF404046.1|AF404046 Avocado sunblotch viroid isolate CF32, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGCUCACCACGACUCCUCCUUCUCUCAAAGUCGAAACUCAGAGUCGGGAAG hit 118 : 177 64 (rev) 36.50 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A A:G:CGAAAC:CA G:GUC::::A: 130 aaaagcucaccacgacuccuccuucucuCA-AAGUCGAAACUCA---GAGUCGGGAAG 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75400,sp|AF404047.1|AF404047 Avocado sunblotch viroid isolate CF33, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 119 : 177 63 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75401,sp|AF404048.1|AF404048 Avocado sunblotch viroid isolate CF34, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 120 : 179 63 (rev) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuua 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 auaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75402,sp|AF404049.1|AF404049 Avocado sunblotch viroid isolate CF35, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGGUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 121 : 177 63 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagguugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75403,sp|AF404050.1|AF404050 Avocado sunblotch viroid isolate CF36, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 122 : 70 184 (fwd) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75404,sp|AF404051.1|AF404051 Avocado sunblotch viroid isolate CF37, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUAAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 123 : 70 186 (fwd) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagaucgaagacgagugaacuaauuuuuuuaaa 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75405,sp|AF404052.1|AF404052 Avocado sunblotch viroid isolate CF38, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGUGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 124 : 70 187 (fwd) 39.29 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+G G:C:+A 70 CUUUCCCUGAAGUGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuua 129 ...............................____>>>>,,,<<<<____>>>>,))))) 20 ...............................AAUAGGACGAAACgcACGAgcGUCcuggA 48 A+A:G:CGAAAC:CA G:GUC::::A 130 auaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAA 186 ) 49 u 49 : 187 G 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75406,sp|AF404053.1|AF404053 Avocado sunblotch viroid isolate CF39, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG hit 125 : 70 186 (fwd) 41.95 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U: ::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagaucgaagacgagugaacuaauuuuuuuuaa 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC:: :A: 130 uaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGCAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75407,sp|AF404054.1|AF404054 Avocado sunblotch viroid isolate CF40, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAACAG hit 126 : 70 188 (fwd) 36.82 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagaucgaagacgagugaacuaauuuuuuuuua 129 ...............................____>>>>,,,<<<<____>>>>,)))). 20 ...............................AAUAGGACGAAACgcACGAgcGUCcugg. 47 A+A:G:CGAAAC:CA G:GUC:::: 130 auaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAc 186 )) 48 Au 49 A: 187 AG 188 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75408,sp|AF404055.1|AF404055 Avocado sunblotch viroid isolate CF41, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 127 : 70 187 (fwd) 44.23 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 ...............................____>>>>,,,<<<<____>>>>,))))) 20 ...............................AAUAGGACGAAACgcACGAgcGUCcuggA 48 A+A:G:CGAAAC:CA G:GUC::::A 130 uaaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAA 186 ) 49 u 49 : 187 G 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75409,sp|AF404056.1|AF404056 Avocado sunblotch viroid isolate CF42, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGUCGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 128 : 180 64 (rev) 40.14 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG C:+A 70 CUUUCCCUGAAGAGUCGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G CGAAAC:CA G:GUC::::A: 130 uaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75410,sp|AF404057.1|AF404057 Avocado sunblotch viroid isolate CF43, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 129 : 70 187 (fwd) 44.23 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuua 129 ...............................____>>>>,,,<<<<____>>>>,))))) 20 ...............................AAUAGGACGAAACgcACGAgcGUCcuggA 48 A+A:G:CGAAAC:CA G:GUC::::A 130 auaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAA 186 ) 49 u 49 : 187 G 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75411,sp|AF404058.1|AF404058 Avocado sunblotch viroid isolate CF44, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAACAG hit 130 : 70 187 (fwd) 36.86 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 ..............................____>>>>,,,<<<<____>>>>,)))).) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcugg.A 48 A+A:G:CGAAAC:CA G:GUC:::: A 130 uaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAcA 186 ) 49 u 49 : 187 G 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75412,sp|AF404059.1|AF404059 Avocado sunblotch viroid isolate CF45, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 131 : 70 187 (fwd) 44.23 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 ...............................____>>>>,,,<<<<____>>>>,))))) 20 ...............................AAUAGGACGAAACgcACGAgcGUCcuggA 48 A+A:G:CGAAAC:CA G:GUC::::A 130 auaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAA 186 ) 49 u 49 : 187 G 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75413,sp|AF404060.1|AF404060 Avocado sunblotch viroid isolate CF46, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUCUUAAUAAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 132 : 70 186 (fwd) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuucuuaa 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75414,sp|AF404061.1|AF404061 Avocado sunblotch viroid isolate CF47, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGCUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 133 : 70 185 (fwd) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaagcucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75415,sp|AF404062.1|AF404062 Avocado sunblotch viroid isolate CF48, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACCAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 134 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 71 CUUUCCCUGAAGAGACGAAgugaucaagagaucgaagacgagugaaccaauuuuuuuaau 130 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 131 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75416,sp|AF404063.1|AF404063 Avocado sunblotch viroid isolate CF49, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 135 : 176 63 (rev) 44.39 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgaggaacuaauuuuuuuaaua 129 ...........................____>>>>,,,<<<<____>>>>,)))))) 20 ...........................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75417,sp|AF404064.1|AF404064 Avocado sunblotch viroid isolate CF50, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 136 : 70 184 (fwd) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75418,sp|AF404065.1|AF404065 Avocado sunblotch viroid isolate CF51, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGAUGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 137 : 70 184 (fwd) 41.92 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:::+A 70 CUUUCCCUGAAGAGAUGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:::CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75419,sp|AF404066.1|AF404066 Avocado sunblotch viroid isolate CF52, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 138 : 70 185 (fwd) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75420,sp|AF404067.1|AF404067 Avocado sunblotch viroid isolate CF53, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAACAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGCAAG hit 139 : 70 184 (fwd) 42.03 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U: ::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaac 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC:: :A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGCAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75421,sp|AF404068.1|AF404068 Avocado sunblotch viroid isolate CF54, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCAUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 140 : 70 185 (fwd) 40.66 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U:::: UGA+GAG:C:+A 70 CUUUCCAUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75422,sp|AF404069.1|AF404069 Avocado sunblotch viroid isolate CF55, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGGCGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 141 : 70 184 (fwd) 40.22 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGGCGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75423,sp|AF404070.1|AF404070 Avocado sunblotch viroid isolate CF56, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 142 : 70 186 (fwd) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuua 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 auaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75424,sp|AF404071.1|AF404071 Avocado sunblotch viroid isolate CF57, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAUGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 143 : 70 184 (fwd) 38.77 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C: A 70 CUUUCCCUGAAGAGACG-Augugaucaagagauugaagacgagugaacuaauuuuuuuaa 128 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 129 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75425,sp|AF404072.1|AF404072 Avocado sunblotch viroid isolate CF58, complete genome. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 144 : 179 64 (rev) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 71 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 130 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 131 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75426,sp|AF404073.1|AF404073 Avocado sunblotch viroid isolate CF59, complete genome. ----isReversed: 0 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 145 : 70 162 (fwd) 45.23 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaacgacuccucc 129 ......____>>>>,,,<<<<____>>>>,)))))) 20 ......AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #75427,sp|AF404074.1|AF404074 Avocado sunblotch viroid isolate CF60, complete genome. ----isReversed: 0 ----hitSequence: UCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGA hit 146 : 1 109 (fwd) 24.29 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :::CUGA+GAG:C:+A 1 ---UCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 57 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::: 58 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGA--- 109 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98879,sp|M31100.1|ASBVCS10 Avocado sunblotch viroid complete sequence, variant C-10. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUAGGAAAG hit 147 : 178 64 (rev) 41.59 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GU ::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUAGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98880,sp|M27297.1|ASBVCS1A Avocado sunblotch viroid complete sequence, variant A-1. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 148 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98881,sp|M31086.1|ASBVCS1B Avocado sunblotch viroid complete sequence, variant B-1. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 149 : 179 65 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 71 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 130 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 131 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98882,sp|M31085.1|ASBVCS2A Avocado sunblotch viroid complete sequence, variants A-2 and C-1. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 150 : 179 64 (rev) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98883,sp|M31087.1|ASBVCS2B Avocado sunblotch viroid complete sequence, variant B-2. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 151 : 181 66 (rev) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 71 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 130 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 131 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98884,sp|M31092.1|ASBVCS2C Avocado sunblotch viroid complete sequence, variant C-2. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 152 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98885,sp|M31088.1|ASBVCS3B Avocado sunblotch viroid complete sequence, variant B-3. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 153 : 181 65 (rev) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 71 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuua 130 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 131 auaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98886,sp|M31093.1|ASBVCS3C Avocado sunblotch viroid complete sequence, variant C-3. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 154 : 179 64 (rev) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98887,sp|M31089.1|ASBVCS4B Avocado sunblotch viroid complete sequence, variant B-4. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 155 : 179 65 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98888,sp|M31094.1|ASBVCS4C Avocado sunblotch viroid complete sequence, variant C-4. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 156 : 177 64 (rev) 44.39 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuaaua 129 ...........................____>>>>,,,<<<<____>>>>,)))))) 20 ...........................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98889,sp|M31090.1|ASBVCS5B Avocado sunblotch viroid complete sequence, variant B-5. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 157 : 179 65 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 71 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 130 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 131 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98890,sp|M31095.1|ASBVCS5C Avocado sunblotch viroid complete sequence, variant C-5. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 158 : 180 64 (rev) 44.27 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuua 129 ..............................____>>>>,,,<<<<____>>>>,)))))) 20 ..............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 auaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98891,sp|M31091.1|ASBVCS6B Avocado sunblotch viroid complete sequence, variant B-6. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 159 : 180 65 (rev) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98892,sp|M31096.1|ASBVCS6C Avocado sunblotch viroid complete sequence, variant C-6. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 160 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 71 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 130 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 131 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98893,sp|M31097.1|ASBVCS7C Avocado sunblotch viroid complete sequence, variant C-7. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 161 : 179 64 (rev) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 71 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 130 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 131 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98894,sp|M31098.1|ASBVCS8C Avocado sunblotch viroid complete sequence, variant C-8. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 162 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98895,sp|M31099.1|ASBVCS9C Avocado sunblotch viroid complete sequence, variant C-9. ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 163 : 179 64 (rev) 44.31 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuuaa 129 .............................____>>>>,,,<<<<____>>>>,)))))) 20 .............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 uaaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98896,sp|X13000.1|ASBVXX Avocado sunblotch viroid (ASBV) genomic RNA ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 164 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98965,sp|X52041.1|ASVI Avocado sunblotch viroid RNA genome variant I ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUUGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 165 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagauugaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98967,sp|X52042.1|ASVII Avocado sunblotch viroid RNA genome variant II ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 166 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A 70 CUUUCCCUGAAGAGACGAAgugaucaagagaucgaagacgagugaacuaauuuuuuuaau 129 ............................____>>>>,,,<<<<____>>>>,)))))) 20 ............................AAUAGGACGAAACgcACGAgcGUCcuggAu 49 A+A:G:CGAAAC:CA G:GUC::::A: 130 aaaaguucaccacgacuccuccuucucuCACAAGUCGAAACUCA---GAGUCGGAAAG 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #98968,sp|X52043.1|ASVIII Avocado sunblotch viroid RNA genome variant III ----isReversed: 1 ----hitSequence: CUUUCCCUGAAGAGACGAAGUGAUCAAGAGAUCGAAGACGAGUGAACUAAUUUUUUUAAUAAAAGUUCACCACGACUCCUCCUUCUCUCACAAGUCGAAACUCAGAGUCGGAAAG hit 167 : 178 64 (rev) 44.35 bits ((((((,,,,,,,<<<<__......................................... 1 aUccagCUGAcGAGUCCCA......................................... 19 :U::::CUGA+GAG:C:+A