Params: ./cmzasha --no-stderr --filter 200 25 Rfam/cm/RF00162.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00162_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00162_fwdinf_hmmtype1_Saureus_advance_copy.bin Build: release Host: tricycle.cs.washington.edu pid: 7431 ----hmm-from-cmFileName: Rfam/cm/RF00162.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-greedy-node 200 25.00 Rfam/cm/RF00162.cm forward-alg-inf 100000 cycling-node cfsqp-elim-gauss 0 1 Build: release Host: recycle.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-greedy-node 200 25.00 Rfam/cm/RF00162.cm forward-alg-inf 100000 cycling-node cfsqp-elim-gauss 0 1 Build: release Host: recycle.cs.washington.edu ----hmm-from-cmFileName: ../zasha-infernal/Rfam/cm/RF00162.cm ----hmm-build-info: ;(default construction of HMM) Params: --cm2hmm-set-node-combiner-forward-inf ../zasha-infernal/Rfam/cm/RF00162.cm 1 1 100000 1 Build: release Host: SERENA ;Params: --set-input-mm-file Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf ../zasha-infernal/Rfam/cm/RF00162.cm 1 1 100000 1 Build: release Host: SERENA ----cmFile: Rfam/cm/RF00162.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #13824,sp|AB090330.1|AB090330 Clostridium sporogenes genes for 5, 10-methylene tetrahydrofolate reductase, collagenase, hypothetical protein, partial and complete cds. ----isReversed: 1 ----hitSequence: UACUUAUCAAGAGCGGUGGAGGGACUGGCCCUAUGAAGCCCAGCAACCUAUAUGAAAAUAUAUAAGGUGCUAAAUCCUGCAGCAUAAGCUGAGAGAUGAGGA hit 0 : 380 279 (rev) 116.82 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.._ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa..A 58 :+CU:AUCAAGAG GG:GGAGGGACUGGCCCUAUGAA:CC CAGCAACC:A:AU +A + 4326 UACUUAUCAAGAGCGGUGGAGGGACUGGCCCUAUGAAGCC-CAGCAACCUAUAUGAAaaU 4384 __>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 AU:U:A GGUGCUAA+UCCUGCAG:A UAA :CUGA+AGAU:AG+: 4385 AUAUAA-GGUGCUAAAUCCUGCAGCA-UAA--GCUGAGAGAUGAGGA 4427 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #18078,sp|AE001982.1|AE001982 Deinococcus radiodurans R1 section 119 of 229 of the complete chromosome 1. ----isReversed: 0 ----hitSequence: CCUUUAUCCAGAGUCGGCGCAGGGACCUGGCCCCAUGACCGCCGCAGCAACCGGCCCUCAUCACGGCAGCGGUGCUUUCCAGACCCGCGCGAGCAGCGCCCGACGAUGGGCG hit 1 : 1022 1133 (fwd) 26.80 bits ((((((((,,,,,.,<<<---<<<_.____>>>-----.->>>,,<<<-<<<<<<_____ 1 cUCUUAUCaAGAG.AGGuGGAGGGA.CUGGCCCUAUGA.AaCCUCaGCAACCgacaUuUa 57 C:: :AUC+AGAG GG:G AGGGA CUGGCCC AUGA :CC CAGCAACC::C U A 1022 CCUUUAUCCAGAGuCGGCGCAGGGAcCUGGCCCCAUGAcCGCCGCAGCAACCGGCCCUCA 1081 ..___>>>-->>>>>>,,,,,,,,<<<<__..____.._>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUCCuGCAgaau..uaAU..uucUGAAAGAUAAGAg 105 A G:: +GGUGCU UUCC+G:: : +A : ::+A GAU: ::G 1082 ucACGGCAGCGGUGCU--UUCCAGACCCGCgcGAGCagCGCCCGACGAUGGGCG 1133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22298,sp|AE007554.1|AE007554 Clostridium acetobutylicum ATCC824 section 42 of 356 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUCAAGAGUGACGGAGGGAUAGGCCCUAUGAAGUCCGGCAACAUCCAAUUAUUUUGGAGAUGUGCUAAUUCCUACAGGUUUAUCCUGAGAGAUGAGAA hit 2 : 96 198 (fwd) 108.56 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 :UCU:AUCAAGAG+G::GGAGGGA GGCCCUAUGAA::C C:GCAAC:::CA UUA ++ 96 UUCUUAUCAAGAGUGACGGAGGGAUAGGCCCUAUGAAGUC-CGGCAACAUCCAAUUAuUU 154 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 UG:: A:GUGC:AAUUCCU CAG: U+A U:CUGA+AGAU:AGA: 155 UGGAGAUGUGCUAAUUCCUACAGGU-UUA-UCCUGAGAGAUGAGAA 198 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22317,sp|AE007573.1|AE007573 Clostridium acetobutylicum ATCC824 section 61 of 356 of the complete genome. ----isReversed: 1 ----hitSequence: AUCUUAUCAAGAGUGGUGGAGGGACUGGCCCUUUGAAACCCGGCAACCAGUAUAUUUUUUAAUAUAUGUGGUGCUAAAUCCUGCAGCAAACGCUGAUAGAUGAGAA hit 3 : 4052 3947 (rev) 110.94 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCU:AUCAAGAG+GGUGGAGGGACUGGCCCU UGAAACC C:GCAACC ::AU+U+ 7489 AUCUUAUCAAGAGUGGUGGAGGGACUGGCCCUUUGAAACC-CGGCAACCAGUAUAUUuuu 7547 ...___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 ...AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +AU:: GGUGC:AA+UCCUGCAG:A AA :CUGA AGAU:AGA: 7548 uaaUAUAUGU-GGUGCUAAAUCCUGCAGCA--AA-CGCUGAUAGAUGAGAA 7594 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22352,sp|AE007608.1|AE007608 Clostridium acetobutylicum ATCC824 section 96 of 356 of the complete genome. ----isReversed: 1 ----hitSequence: UCCUUAUCAAGAGAAACGGAGGGACUGGCCCAAUGAUGUUUCAGCAACCAAGGUUUUAUACUUAUGGUGCUAAUUCCAGCAGGAUAUUUUCUGAAAGAUGAGGA hit 4 : 12720 12617 (rev) 111.54 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 ::CU:AUCAAGAGA:::GGAGGGACUGGCCC AUGA :::UCAGCAACC:A UUU+A++ 13 UCCUUAUCAAGAGAAACGGAGGGACUGGCCCAAUGAUGUUUCAGCAACCAAGGUUUUAUA 72 >>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 U:A GGUGCUAAUUCC+GCAG:A +AU U:CUGAAAGAU:AG:: 73 CUUAUGGUGCUAAUUCCAGCAGGA--UAUuUUCUGAAAGAUGAGGA 116 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22358,sp|AE007614.1|AE007614 Clostridium acetobutylicum ATCC824 section 102 of 356 of the complete genome. ----isReversed: 0 ----hitSequence: CACUUAUCAAGAGAGGUGGAGGGACCGGCCCUGUGAAGCCCAGCAACCUGUAUAUGUUAAUUAUACAAGGUGCUAAUUCCUGCAGCGCUAGCUGAGAGAUGAGAA hit 5 : 6196 6300 (fwd) 109.97 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 : CU:AUCAAGAGAGG:GGAGGGAC GGCCCU UGAA:CC CAGCAACC:::AU+U 6196 CACUUAUCAAGAGAGGUGGAGGGACCGGCCCUGUGAAGCC-CAGCAACCUGUAUAUGuua 6254 ..___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +AU:::A GGUGCUAAUUCCUGCAG: +A :CUGA+AGAU:AG : 6255 auUAUACAA-GGUGCUAAUUCCUGCAGCGC-UA--GCUGAGAGAUGAGAA 6300 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22435,sp|AE007691.1|AE007691 Clostridium acetobutylicum ATCC824 section 179 of 356 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUCAAGAAGGUGGAGGGACUGGCCCUAUGAAGCCUGACAACCGGCAAAUGUACGGUGUUAAUUCCUGCAAAACUUAUUUGUUUUGAAAGAUAAGAA hit 6 : 7901 8001 (fwd) 105.16 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 :UCUUAUCAAGA AGG:GGAGGGACUGGCCCUAUGAA:CC ::CAACC::CA AAU 7901 UUCUUAUCAAGA-AGGUGGAGGGACUGGCCCUAUGAAGCC-UGACAACCGGCA----AAU 7954 >>>-->>>>>>,,,,,,,,<<<<__.____.._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau.uaAU..uucUGAAAGAUAAGAg 105 G:: GGUG::AAUUCCUGCA:AA UA+U UU:UGAAAGAUAAGA: 7955 GUAC-GGUGUUAAUUCCUGCAAAACuUAUUugUUUUGAAAGAUAAGAA 8001 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22520,sp|AE007776.1|AE007776 Clostridium acetobutylicum ATCC824 section 264 of 356 of the complete genome. ----isReversed: 1 ----hitSequence: GUCUUAUCAAGAGAGGUGGAGGGACUGGCCCUAUGAAACCCAACAACCAGCAUUUUUUAAUUAGAUGUAUGGUGUUAAUUCCUGCAAAGUUAAUUUUGAGAGAUAAGAG hit 7 : 3380 3272 (rev) 117.71 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCUUAUCAAGAGAGGUGGAGGGACUGGCCCUAUGAAACC CA:CAACC:+:AUUU+ 6817 GUCUUAUCAAGAGAGGUGGAGGGACUGGCCCUAUGAAACC-CAACAACCAGCAUUUUuua 6875 ...___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 ...AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A +:+:A GGUG:UAAUUCCUGCA:A U+A+UU:UGA+AGAUAAGA: 6876 auuAGAUGUAUGGUGUUAAUUCCUGCAAAG-UUAAUUUUGAGAGAUAAGAG 6925 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22527,sp|AE007783.1|AE007783 Clostridium acetobutylicum ATCC824 section 271 of 356 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGAGGUGGAGGGAAAGGGCCCGUUGAAACCCGGCAACCGAUGUAUUAAUUUAAGUACAUAAUGGUGCCAAUUCCUGCAGAAUUAUUCUGCAAGAUAAGAG hit 8 : 7014 6904 (rev) 115.52 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCUUAUCAAGAGAGGUGGAGGGA GGCCC+ UGAAACC C:GCAACC:A: U+U+ 3875 CUCUUAUCAAGAGAGGUGGAGGGAaAGGGCCCGUUGAAACC-CGGCAACCGAUGUAUUaa 3933 ......___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 ......AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +A :U:A GGUGC:AAUUCCUGCAGAA U+A UUCUG AAGAUAAGAG 3934 uuuaagUACAUAAUGGUGCCAAUUCCUGCAGAA-UUA-UUCUGCAAGAUAAGAG 3985 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25255,sp|AE010547.1|AE010547 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 89 of 197 of the complete genome. ----isReversed: 1 ----hitSequence: AAACCAUCAAGAGAGAUUGAGGGACAGGCCCGUUGAGAUCUCAGCAACCUACGUAAAAUGUGUGGUGCUAAUUCCUGAUAGAUGGAAAAGAUUAUAAUACAUCUCUC hit 9 : 5644 5538 (rev) 71.14 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 :::AU AAGAGAG:U GAGGGAC GGCCC+ UGA A:CUCAGCAACC:AC U++ AAU 7112 AAACCAUCAAGAGAGAUUGAGGGACAGGCCCGUUGAGAUCUCAGCAACCUACGUAA-AAU 7170 >>>-->>>>>>,,,,,,,,<<<<__.____..._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau.uaAU...uucUGAAAGAUAAGAg 105 GU: GGUGCUAAUUCCUG: :AU +AA+ U: :A A AU::: 7171 GUGU-GGUGCUAAUUCCUGAUAGAUgGAAAagaUUAUAAUACAUCUCUC 7218 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25285,sp|AE010577.1|AE010577 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 119 of 197 of the complete genome. ----isReversed: 1 ----hitSequence: UAACCAUCCAGAGAAACGGAGGGACUGGCCCAAUGAUGUUUCAGCAACCUACUUAAAUGUGUGGUGCUAAUUCCAGAGAGAUGGAGAGGAAAAUUGAAA hit 10 : 3358 3260 (rev) 74.35 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 : :::AU +AGAGA:::GGAGGGACUGGCCC AUGA :::UCAGCAACC:AC+U+ AAU 8175 UAACCAUCCAGAGAAACGGAGGGACUGGCCCAAUGAUGUUUCAGCAACCUACUUA--AAU 8232 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 GU: GGUGCUAAUUCC+G:: A + + ::+AA AU::: : 8233 GUGU-GGUGCUAAUUCCAGAGAGA--UG-GAGAGGAAAAUUGAAA 8273 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #26654,sp|AE011946.1|AE011946 Xanthomonas axonopodis pv. citri str. 306, section 324 of 469 of the complete genome. ----isReversed: 1 ----hitSequence: UCACCAUCGAGACCGGCGGAGGGACAGGCCCUUUGAUGCCGGGGCAGCCAGCGGAGCGCGCAAGCGUCCGCGUUUGGUGCCAAAUCCUGCGGGGACCUCCGCGUCCGCCGAAAGAUGGUUC hit 11 : 7029 6909 (rev) 43.36 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :::::AUC AGA GG:GGAGGGAC GGCCCU UGA :CC :GCA:CC::C + 7767 UCACCAUCGAGACCGGCGGAGGGACAGGCCCUUUGAUGCCGGGGCAGCCAGCGGAGCgcg 7826 ........___>>>-->>>>>>,,,,,,,,<<<<__.....____._>>>>,,,)))))) 58 ........AaugucAaGGUGCuAAUUCCuGCAgaau.....uaAU.uucUGAAAGAUAAG 103 G:: GG:GC:AA+UCCUGC:G + U C:GAAAGAU::: 7827 caagcgucCGCGUUU-GGUGCCAAAUCCUGCGGGGAccuccGCGUcCGCCGAAAGAUGGU 7885 )) 104 Ag 105 :: 7886 UC 7887 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #27105,sp|AE012398.1|AE012398 Xanthomonas campestris pv. campestris str. ATCC 33913, section 306 of 460 of the complete genome. ----isReversed: 1 ----hitSequence: UCACCAUCGAGACCGGCGGAGGGACAGGCCCUUUGAUGCCGGGGCAGCCAGCGGAGCGCGCAAGCGCCCGCGUUUGGUGCCAAAUCCUGCGGGGACCUCCGCGUCCGCCGAAAGAUGGUUC hit 12 : 12711 12591 (rev) 43.36 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :::::AUC AGA GG:GGAGGGAC GGCCCU UGA :CC :GCA:CC::C + 22 UCACCAUCGAGACCGGCGGAGGGACAGGCCCUUUGAUGCCGGGGCAGCCAGCGGAGCgcg 81 ........___>>>-->>>>>>,,,,,,,,<<<<__.....____._>>>>,,,)))))) 58 ........AaugucAaGGUGCuAAUUCCuGCAgaau.....uaAU.uucUGAAAGAUAAG 103 G:: GG:GC:AA+UCCUGC:G + U C:GAAAGAU::: 82 caagcgccCGCGUUU-GGUGCCAAAUCCUGCGGGGAccuccGCGUcCGCCGAAAGAUGGU 140 )) 104 Ag 105 :: 141 UC 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #27323,sp|AE012834.1|AE012834 Chlorobium tepidum TLS section 55 of 194 of the complete genome. ----isReversed: 0 ----hitSequence: CUAUCAUCCAGAAAGGCGGAGGGACUGGCCCUGCGAAGCCUUGGCAACCUUCAUUCCACAUGAGCGGUGCCAAAUCCAUCCCGGAGGAAAUCCGGGAAAGAUGAUGU hit 13 : 3852 3958 (fwd) 83.46 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 :U:AUC+AGA AGG:GGAGGGACUGGCCCU GAA:CCU :GCAACC::CAUU A 3852 CUAUCAUCCAGAAAGGCGGAGGGACUGGCCCUGCGAAGCCUUGGCAACCUUCAUUCCaCA 3911 _>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 UG:: GGUGC:AA+UCC+ C::: +AA+ :::GAAAGAU:A: 3912 UGAGC-GGUGCCAAAUCCAUCCCGGAgGAAAuCCGGGAAAGAUGAUGU 3958 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #27509,sp|AE013020.1|AE013020 Thermoanaerobacter tengcongensis strain MB4T, section 47 of 244 of the complete genome. ----isReversed: 0 ----hitSequence: CUCUUAUCAAGAGAGGUGGAGGGAAAGAGCCCGAUGAAACCCGGCAACCUGUCCUUUUAAGGAUAAGGUGCCAAUUCUCUCAGAAGAUUUUUUCUUCUGAAAGAUGAGGG hit 14 : 702 811 (fwd) 102.46 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 C CU:AUCAAGAGAGGUGGAGGGA GCCC+AUGAAACC C:GCAACC::: UU+ 702 CUCUUAUCAAGAGAGGUGGAGGGAaAGAGCCCGAUGAAACC-CGGCAACCUGUCCUUUua 760 ___>>>-->>>>>>,,,,,,,,<<<<__.____..._>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaau.uaAU...uucUGAAAGAUAAGAg 105 A :::A GGUGC:AAUUC CAGAA U++U UUCUGAAAGAU:AG G 761 AGGAUAA-GGUGCCAAUUCUCUCAGAAGaUUUUuucUUCUGAAAGAUGAGGG 811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #27621,sp|AE013132.1|AE013132 Thermoanaerobacter tengcongensis strain MB4T, section 159 of 244 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGAGGUGGAGGGACUGGCCCGAUGAAACCCGGCAACCAGCCUUAGGGCAUGGUGCCAAUUCCUGCAGCGGUUUCGCUGAAAGAUGAGAG hit 15 : 12640 12541 (rev) 118.84 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 CUCU:AUCAAGAGAGGUGGAGGGACUGGCCC+AUGAAACC C:GCAACC+:C UU A 41 CUCUUAUCAAGAGAGGUGGAGGGACUGGCCCGAUGAAACC-CGGCAACCAGCCUU--AGG 97 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 G:+ GGUGC:AAUUCCUGCAG: +++U :CUGAAAGAU:AGAG 98 GCAU-GGUGCCAAUUCCUGCAGCG-GUUUCGCUGAAAGAUGAGAG 140 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #27651,sp|AE013162.1|AE013162 Thermoanaerobacter tengcongensis strain MB4T, section 189 of 244 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGUGGUGGAGGGACUGGCCCGAUGAAACCCGGCAACCGGCACGUAAGUGCUUGGUGCCAAUUCCUGCAGGUUGGGGUUACCCAGCCUGAGAGAUGAGAG hit 16 : 3974 3865 (rev) 112.84 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 CUCU:AUCAAGAG+GGUGGAGGGACUGGCCC+AUGAAACC C:GCAACC :CA UAA U 6 CUCUUAUCAAGAGUGGUGGAGGGACUGGCCCGAUGAAACC-CGGCAACCGGCACGUAAGU 64 >>>-->>>>>>,,,,,,,,<<<<__....____..._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau....uaAU...uucUGAAAGAUAAGAg 105 G: GGUGC:AAUUCCUGCAG: U U+A +:CUGA+AGAU:AGAG 65 GCUU-GGUGCCAAUUCCUGCAGGUUggggUUACccaGCCUGAGAGAUGAGAG 115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30274,sp|AE015937.1|AE015937 Clostridium tetani E88, section 2 of 10 of the complete genome. ----isReversed: 0 ----hitSequence: CUCUUAUCGAGAGAGGUGGAGGGAAAGGGCCCUAUGAAACCCGGCAACCAAUAUUUUUAGAAGUAUUAAGGUGCCAAUUCCUGCAGAAAGUUCUGCAAGAUAAGAG hit 17 : 3369 3474 (fwd) 117.67 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCUUAUC AGAGAGGUGGAGGGA GGCCCUAUGAAACC C:GCAACC:A:AUUU+ 3369 CUCUUAUCGAGAGAGGUGGAGGGAaAGGGCCCUAUGAAACC-CGGCAACCAAUAUUUUua 3427 ..___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A U:U:AAGGUGC:AAUUCCUGCAGAA A UUCUG AAGAUAAGAG 3428 gaAGUAUUAAGGUGCCAAUUCCUGCAGAA--AG-UUCUGCAAGAUAAGAG 3474 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30277,sp|AE015940.1|AE015940 Clostridium tetani E88, section 5 of 10 of the complete genome. ----isReversed: 1 ----hitSequence: AGCUUAUUAAGAGCGGUGGAGGGACUGGCCCUAUGAAGCCCGGCAACCUGUAUAUGUGUUUGCAUAUUAUAAGGUGCUAAAUCCUGCGGUGUAAACCGAGAGAUGAGGA hit 18 : 248618 248510 (rev) 103.56 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 ::CU:AU:AAGAG GG:GGAGGGACUGGCCCUAUGAA:CC C:GCAACC:::AU+U 52086 AGCUUAUUAAGAGCGGUGGAGGGACUGGCCCUAUGAAGCC-CGGCAACCUGUAUAUGugu 52144 ......___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 ......AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A+U:::A GGUGC:AA+UCCUGC:G: UAA :C:GA+A:AU:AG:: 52145 uugcauAUUAUAA-GGUGCUAAAUCCUGCGGUG-UAA--ACCGAGAGAUGAGGA 52194 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30277,sp|AE015940.1|AE015940 Clostridium tetani E88, section 5 of 10 of the complete genome. ----isReversed: 1 ----hitSequence: AUCUUAUCAAGAGCGGUUGAGGGACUGGCCCUAUGAAACCCAGCAACCUAUACACAAAGUAUAAAGGUGCUAACUCCAGCAGGAAAUUUCCUGAAAGAUAAGAA hit 19 : 18048 17945 (rev) 119.16 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 :UCUUAUCAAGAG GGU GAGGGACUGGCCCUAUGAAACC CAGCAACC:A:A + A A 282656 AUCUUAUCAAGAGCGGUUGAGGGACUGGCCCUAUGAAACC-CAGCAACCUAUACACAaAG 282714 _>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 U:U:AAGGUGCUAA UCC+GCAG:A AAU U:CUGAAAGAUAAGA: 282715 UAUAAAGGUGCUAACUCCAGCAGGA--AAUuUCCUGAAAGAUAAGAA 282759 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30281,sp|AE015944.1|AE015944 Clostridium tetani E88, section 9 of 10 of the complete genome. ----isReversed: 1 ----hitSequence: UUCUUAUCAAGAGAGGCGGAGGGACUGGCCCUAUGAAACCCGGCAACCAAAAAUAAUAAUUUUAAGGUGCCAAUUCCAGCAGGUGAAACCUGACAGAUAAGAC hit 20 : 267219 267117 (rev) 116.97 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 :UCUUAUCAAGAGAGG:GGAGGGACUGGCCCUAUGAA:CC C:GCAACC:A:A U+A AA 32987 UUCUUAUCAAGAGAGGCGGAGGGACUGGCCCUAUGAAACC-CGGCAACCAAAAAUAAuAA 33045 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 U:U:AAGGUGC:AAUUCC+GCAG: +AA+ :CUGA AGAUAAGA: 33046 UUUUAAGGUGCCAAUUCCAGCAGGU-GAAA-CCUGACAGAUAAGAC 33089 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30283,sp|AE016744.1|AE016744 Staphylococcus epidermidis ATCC 12228, section 1 of 9 of the complete genome. ----isReversed: 0 ----hitSequence: ACCUUAUUUUGAGAAGCAGAGGGAUUUGGCCCGUAGAAGCUUCAGCAACCGACUUUAAAUAGCACGGUGCUAAUACCAACGAGCAACUCGAAUGAUAAGUA hit 21 : 15971 16071 (fwd) 80.42 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 ::CUUAU: GAGA:G: GAGGGA UGGCCC+ GAA:C:UCAGCAACCG: +UU+ AA 15971 ACCUUAUUUUGAGAAGCAGAGGGAuUUGGCCCGUAGAAGCUUCAGCAACCGACUUUA-AA 16029 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 U :CA+GGUGCUAAU CC+ C::: AA :::GAA :AUAAG:: 16030 UAGCACGGUGCUAAUACCAACGAGC--AA--CUCGAAUGAUAAGUA 16071 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30284,sp|AE016745.1|AE016745 Staphylococcus epidermidis ATCC 12228, section 2 of 9 of the complete genome. ----isReversed: 0 ----hitSequence: CUCUUAUCGAGAGAGGUGGAGGGAUGUGCCCUAAGAAGCCCGGCAACCGUCUAAAAUAGAAAUGGUGCCAAUUCACAUAAAGUAUAACUUUAGAAGAUGAGAG hit 22 : 287368 287470 (fwd) 101.58 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 CUCU:AUC AGAGAGG:GGAGGGA GCCCUA GAA:CC C:GCAACC::C+ ++ A++ 287368 CUCUUAUCGAGAGAGGUGGAGGGAUGUGCCCUAAGAAGCC-CGGCAACCGUCUAAA-AUA 287425 >>>-->>>>>>,,,,,,,,<<<<__._____>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau.uaAUuucUGAAAGAUAAGAg 105 G::A GGUGC:AAUUC :A:A U UAA U:U:+AAGAU:AGAG 287426 GAAAUGGUGCCAAUUCACAUAAAGUaUAA-CUUUAGAAGAUGAGAG 287470 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30288,sp|AE016749.1|AE016749 Staphylococcus epidermidis ATCC 12228, section 6 of 9 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCCUGAGUGGUGGAGGGACAUGGACCCAAUGAAACCCAGCAACCUCUUUAUUUAAAGAAAGGUGCCAAACCGUUUGCAGACAAAUAUGGUCUGAACGAUAAGAG hit 23 : 3761 3652 (rev) 98.68 bits ((((((((,,,,,,<<<---<<<_.____.>>>------>>>,,<<<-<<<<<<______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGG.CCCUAUGAAaCCUCaGCAACCgacaUuUaA 58 CUCUUAUC+ GAG+GGUGGAGGGA UGG CCC AUGAAACC C:GCAACC:::+U+U++ 299063 CUCUUAUCCUGAGUGGUGGAGGGAcAUGGaCCCAAUGAAACC-CAGCAACCUCUUUAUUU 299121 __>>>-->>>>>>,,,,,..,,,<<<<__.____._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUC..CuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 A+:::AAGGUGC:AA+ C UGCAGA +AU +UCUGAA GAUAAGAG 299122 AAAGAAAGGUGCCAAACCguUUGCAGACAaAUAUgGUCUGAACGAUAAGAG 299172 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30289,sp|AE016750.1|AE016750 Staphylococcus epidermidis ATCC 12228, section 7 of 9 of the complete genome. ----isReversed: 1 ----hitSequence: AACUUAUCAAGAGAAGUGGAGGGACUGGCCCAAAGAAGCUUCGGCAACAUUGUAUCAUGUGCCAAUUCCAGUAACCGAGAAGGUUAGAAGAUAAGGU hit 24 : 132874 132778 (rev) 90.86 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 +CUUAUCAAGAGA:G:GGAGGGACUGGCCC A GAA:C:UC:GCAAC: +U U A+ 167825 AACUUAUCAAGAGAAGUGGAGGGACUGGCCCAAAGAAGCUUCGGCAACA---UUGU-AUC 167880 >>>-->>>>>>,,,,,,,,<<<<__._____>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau.uaAUuucUGAAAGAUAAGAg 105 A :GUGC:AAUUCC+G:A:: +AA +::U:+AAGAUAAG+ 167881 ---A-UGUGCCAAUUCCAGUAACCGaGAA-GGUUAGAAGAUAAGGU 167921 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30458,sp|AE016998.1|AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UACUUAUCCAGAGAGGUAGAGGGACUGGCCCUAUGACACCUCAGCAGCGGGUUCUGUAAUAGGAACACCGUGCUAAUUCCAGCAAGCAAGUCUUGAAAGAUAAGUG hit 25 : 183064 183169 (fwd) 96.44 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 : CUUAUC+AGAGAGGU GAGGGACUGGCCCUAUGA ACCUCAGCA:C G :+ U + 183064 UACUUAUCCAGAGAGGUAGAGGGACUGGCCCUAUGACACCUCAGCAGCGGGUUCUGUaau 183123 ___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A : CA+ G:GCUAAUUCC+GCA:: A U::UGAAAGAUAAG : 183124 AGGAACACCGUGCUAAUUCCAGCAAGC-AAG-UCUUGAAAGAUAAGUG 183169 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30458,sp|AE016998.1|AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: AUUGUAUCAAGAGAGGUGGAGGGACUGGCCCUUUGAAACCUCGGCAACAGGUUCAUUUUGAAUACUGUGCCACUUCCUGCAAGCUUUAUGCUUGAAAGAUAGAAU hit 26 : 194622 194518 (rev) 102.16 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 U::UAUCAAGAGAGGUGGAGGGACUGGCCCU UGAAACCUC:GCAAC: :+ +U+++ 112722 AUUGUAUCAAGAGAGGUGGAGGGACUGGCCCUUUGAAACCUCGGCAACAGGUUCAUUUUG 112781 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 : A+:GUGC:A UUCCUGCA:: UU+AU+::UGAAAGAUA::A 112782 AAUACUGUGCCACUUCCUGCAAGCUUUAUGCUUGAAAGAUAGAAU 112826 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30458,sp|AE016998.1|AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGUGGCGGAGGGACUGGCCCGAUGAUGCCCGGCAACCGAGCUUAUGACGUAUAAGCUAAGGUGCUAAUUCCUGCAAAACGAGUUUUCGUUUUGGAAGAUAAGAG hit 27 : 174290 174176 (rev) 116.04 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 CUCUUAUCAAGAG+GG:GGAGGGACUGGCCC+AUGA :CC C:GCAACC:A UU++ 133054 CUCUUAUCAAGAGUGGCGGAGGGACUGGCCCGAUGAUGCC-CGGCAACCGAGCUUAUgac 133112 ....___>>>-->>>>>>,,,,,,,,<<<<__...____.._>>>>,,,)))))))) 58 ....AaugucAaGGUGCuAAUUCCuGCAgaau...uaAU..uucUGAAAGAUAAGAg 105 AA U:A GGUGC:AAUUCCUGCA:AA U++U UU:UG+AAGAUAAGAG 133113 guauAAGCUAA-GGUGCUAAUUCCUGCAAAACgagUUUUcgUUUUGGAAGAUAAGAG 133168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30459,sp|AE016999.1|AE016999 Bacillus cereus ATCC 14579 section 2 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUCCAGAGAGGUGGAGGGACUGGCCCUACGAUACCUCAGCAACGGGUUUUUUUAAUACCGUGCUAACUCCAGCAAGCCAUAUAAAGGCUUGGAAGAUGAGAA hit 28 : 16775 16881 (fwd) 106.67 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 :UCU:AUC+AGAGAGGUGGAGGGACUGGCCCUA GA ACCUCAGCAAC :+UU ++U 16775 UUCUUAUCCAGAGAGGUGGAGGGACUGGCCCUACGAUACCUCAGCAACGGGUUUU--UUU 16832 >>>-->>>>>>,,,,,,,,<<<<__...____._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau...uaAU.uucUGAAAGAUAAGAg 105 : A+ GUGCUAA UCC+GCA:: UAA+ +::UG+AAGAU:AGA: 16833 AAUACCGUGCUAACUCCAGCAAGCCauaUAAAgGCUUGGAAGAUGAGAA 16881 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30459,sp|AE016999.1|AE016999 Bacillus cereus ATCC 14579 section 2 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: UCUUUAUCAAGAGAGGCAGAGGGACCGGCCCUUUGAAGCCCAGCAACCUCAGUUUAUACAAACUGAAUAGGUGCUAAUUCCUGCAAAAUGCAAUGCAUUUUGGAAGAUAAAAC hit 29 : 67707 67595 (rev) 96.99 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :::UUAUCAAGAGAGG: GAGGGAC GGCCCU UGAA:CC CAGCAACC::: UUUA 233350 UCUUUAUCAAGAGAGGCAGAGGGACCGGCCCUUUGAAGCC-CAGCAACCUCAGUUUAuac 233408 .___>>>--.>>>>>>,,,,,,,,<<<<__.____..._>>>>,,,)))))))) 58 .AaugucAa.GGUGCuAAUUCCuGCAgaau.uaAU...uucUGAAAGAUAAGAg 105 AA :::A GGUGCUAAUUCCUGCA:AAU AAU UU:UG+AAGAUAA::: 233409 aAACUGAAUaGGUGCUAAUUCCUGCAAAAUgCAAUgcaUUUUGGAAGAUAAAAC 233462 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30460,sp|AE017000.1|AE017000 Bacillus cereus ATCC 14579 section 3 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: GUCUUAUCAAGAGCAGGUGGAGGGAUGAGCCCUACGAAGCCCGGCAACCGACCCAUUUAUGGGCACGGUGCUAAUUCUUACAACACAUUGUGUUGAAAGAUAAGAG hit 30 : 146968 146863 (rev) 102.50 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____._ 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.A 58 :UCUUAUCAAGAG AGG:GGAGGGA GCCCUA GAA:CC C:GCAACCG:C +U+ A 154322 GUCUUAUCAAGAGcAGGUGGAGGGAUGAGCCCUACGAAGCC-CGGCAACCGACCCAUUuA 154380 __>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 + G:CA+GGUGC:AAUUC U CA::A A+U U::UGAAAGAUAAGA: 154381 UGGGCACGGUGCUAAUUCUUACAACAC-AUUgUGUUGAAAGAUAAGAG 154427 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30462,sp|AE017002.1|AE017002 Bacillus cereus ATCC 14579 section 5 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AGCUUAUCAAGAGAAGCGGAGGGAACUGGCCCGAAGAAGCUCGGCAACCUGCUUAUAGAAAGCAAGGUGCUAAAUCCAGCAAAAUGGGAUCCAUUUUGAAAGAUAAGGU hit 31 : 167884 167992 (fwd) 112.33 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____._ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.A 58 :CUUAUCAAGAGA:G:GGAGGGA CUGGCCC+A GAA:C: C:GCAACC::C+U+UA A 167884 AGCUUAUCAAGAGAAGCGGAGGGAaCUGGCCCGAAGAAGCU-CGGCAACCUGCUUAUAgA 167942 __>>>-->>>>>>,,,,,,,,<<<<__.____..._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaau.uaAU...uucUGAAAGAUAAGAg 105 A+G::A GGUGC:AA+UCC+GCA:AAU + AU UU:UGAAAGAUAAG: 167943 AAGCAA-GGUGCUAAAUCCAGCAAAAUgGGAUccaUUUUGAAAGAUAAGGU 167992 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30462,sp|AE017002.1|AE017002 Bacillus cereus ATCC 14579 section 5 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUAAAGAGAGGCGGAGGGACUGGCCCUACGAUGCCUCGGCAGCGGACUCGAUUUCAGAGUGCUGUGCCAAAUCCAGCAAGCGUGUGCUUGAAAGAUGAGAA hit 32 : 180645 180750 (fwd) 93.39 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCU:AU:AAGAGAGG:GGAGGGACUGGCCCUA GA :CCUC:GCA:C AC+ ++ 180645 UUCUUAUAAAGAGAGGCGGAGGGACUGGCCCUACGAUGCCUCGGCAGCGGACUCGAUuuc 180704 ___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A +GU G:GC:AA+UCC+GCA:: ++ U+::UGAAA:AU:AGA: 180705 AGAGUGC-UGUGCCAAAUCCAGCAAGC-GUGUGCUUGAAAGAUGAGAA 180750 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30466,sp|AE017006.1|AE017006 Bacillus cereus ATCC 14579 section 9 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UACUUAUCCAGAGAGGUGGAGGGAACGGCCCUAAAAAACCUCAGCAACCCCUAUGCAAUUUUAUAGGAAGGUGCUAAUUCCGCAGAGGACACGAUGUGUUUUUUGAAAGAUAAGAG hit 33 : 167098 167213 (fwd) 84.37 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 : CUUAUC+AGAGAGGUGGAGGGA GGCCCUA AAACCUCAGCAACC:::AU A 167098 UACUUAUCCAGAGAGGUGGAGGGAACGGCCCUAAAAAACCUCAGCAACCCCUAUGCAauu 167157 .___>>>-->>>>>>,,,,,,,,<<<<__...____....._>>>>,,,)))))))) 58 .AaugucAaGGUGCuAAUUCCuGCAgaau...uaAU.....uucUGAAAGAUAAGAg 105 +AU:::AAGGUGCUAAUUCC GCA A AU UU UGAAAGAUAAG : 167158 uUAUAGGAAGGUGCUAAUUCC-GCAGAGGacaCGAUguguuUUUUGAAAGAUAAGAG 167213 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30468,sp|AE017008.1|AE017008 Bacillus cereus ATCC 14579 section 11 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: UUCUUAUCACGAGAGGUGGAGGGACUGGCCCUAUGAUACCUCGGCAGCGGAUUCGUUAUGAAUACUGUGCCAAUUCCAGCAAGGUAACUUGAAAGAUAAGAA hit 34 : 120824 120723 (rev) 104.16 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 :UCUUAUCA GAGAGGUGGAGGGACUGGCCCUAUGA ACCUC:GCA:C :+ U+A+ 179267 UUCUUAUCACGAGAGGUGGAGGGACUGGCCCUAUGAUACCUCGGCAGCGGAUUCGUUAUG 179326 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 : A+ G:GC:AAUUCC+GCA:: UAA ::UGAAAGAUAAGA: 179327 AAUACUGUGCCAAUUCCAGCAAGG-UAA--CUUGAAAGAUAAGAA 179368 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30471,sp|AE017011.1|AE017011 Bacillus cereus ATCC 14579 section 14 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUCAAGAGCAGGUGGAGGGACGAGCCCGACGAAACCCGGCAACCGAUCUACAAUUGUAGACACGGUGCUAAUUCUCGCAGCAUUACGCUGACAGAUAAGGA hit 35 : 79744 79849 (fwd) 93.09 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 : CUUAUCAAGAG AGGUGGAGGGAC GCCC+A GAAACC C:GCAACCGA: U+ A 79744 UUCUUAUCAAGAGcAGGUGGAGGGACGAGCCCGACGAAACC-CGGCAACCGAUCUACAau 79802 ..___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +A : CA+GGUGC:AAUUC GCAG:A U+A :CUGA AGAUAAG : 79803 ugUAGA-CACGGUGCUAAUUCUCGCAGCA-UUA-CGCUGACAGAUAAGGA 79849 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30471,sp|AE017011.1|AE017011 Bacillus cereus ATCC 14579 section 14 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUCUAGAGAGGUAGAGGGACUGGCCCUGUGACGCCUCAGCAACCAUUAACAUUUUGUUAAUAAGGUGCUAAUUCCAGCAAAUUGUGAAAGAUUUGACAGAUGAGAA hit 36 : 269282 269392 (fwd) 107.55 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCU:AUC AGAGAGG: GAGGGACUGGCCCU UGA :CCUCAGCAACC:::A ++ 269282 UUCUUAUCUAGAGAGGUAGAGGGACUGGCCCUGUGACGCCUCAGCAACCAUUAACAUuuu 269341 ___>>>-->>>>>>,,,,,,,,<<<<__..____._>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaau..uaAU.uucUGAAAGAUAAGAg 105 +U:::AAGGUGCUAAUUCC+GCA:A U +AA+ U:UGA AGAU:AGA: 269342 GUUAAUAAGGUGCUAAUUCCAGCAAAUUguGAAAgAUUUGACAGAUGAGAA 269392 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30471,sp|AE017011.1|AE017011 Bacillus cereus ATCC 14579 section 14 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUUGAGAGCGGUGGAGGGAAAGGCCCUGUGAAACCCGGCAACCUUCAAACGAAAUGUUUGAAACGGUGCUAAUACCUGCAAAACGAAUGUUUUGCAUAAUAAGAG hit 37 : 269078 268969 (rev) 100.57 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 CUCUUAU: AGAG GGUGGAGGGA GGCCCU UGAAACC C:GCAACC::CA + 33345 CUCUUAUUGAGAGCGGUGGAGGGAAAGGCCCUGUGAAACC-CGGCAACCUUCAAACGaaa 33403 ..___>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 ++UG::A+GGUGC:AAU CCUGCA:AA +AAU UU:UG A :AUAAGAG 33404 ugUUUGAAACGGUGCUAAUACCUGCAAAACGAAUgUUUUGCAUAAUAAGAG 33454 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30471,sp|AE017011.1|AE017011 Bacillus cereus ATCC 14579 section 14 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGCAGGUGGAGGGAUUUGGCCCGAUGAAGCCCACAACCGACCGUAAUACCAUUGUGAAAUGGGGCGUUUAUUACGCCAAAAGGCACGGUGCUAAUUCCAGCAGAAAGUAAAACUUUCUGGCAGAUAAGAG hit 38 : 77551 77411 (rev) 99.88 bits ((((((((,,,,,.,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____. 1 cUCUUAUCaAGAG.AGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa. 57 CUCUUAUCAAGAG AGG:GGAGGGA UGGCCC+AUGAA:CC CA CAACCG:C U+A 224872 CUCUUAUCAAGAGcAGGUGGAGGGAuUUGGCCCGAUGAAGCC-CA-CAACCGACCGUAAu 224929 ...............................___>>>-->>>>>>,,,,,,,,<<<<__. 58 ...............................AaugucAaGGUGCuAAUUCCuGCAgaau. 85 AA+G:CA+GGUGCUAAUUCC+GCAGAA 224930 accauugugaaauggggcguuuauuacgccaAAAGGCACGGUGCUAAUUCCAGCAGAAAg 224989 ____..._>>>>,,,)))))))) 86 uaAU...uucUGAAAGAUAAGAg 105 UAA+ UUCUG+ AGAUAAGAG 224990 UAAAacuUUCUGGCAGAUAAGAG 225012 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30473,sp|AE017013.1|AE017013 Bacillus cereus ATCC 14579 section 16 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCCCGAGCUGGCGGAGGGACAGGCCCGAUGAAGCCCAGCAACCUCACUUGUAGUGGUAAAUACAGGUGAAUAGGUGCUAAAACCUGUGCGAGGCUACAGGUCUCGAACGAUAAGAG hit 39 : 161744 161623 (rev) 79.87 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCUUAUC+ GAG +GG:GGAGGGAC GGCCC+AUGAA:CC CAGCAACC::: UU + 139232 CUCUUAUCCCGAGcUGGCGGAGGGACAGGCCCGAUGAAGCC-CAGCAACCUCACUUGUag 139290 ..........___>>>--.>>>>>>,,,,,,..,,<<<<______..._>>>>,,,)))) 58 ..........AaugucAa.GGUGCuAAUUCC..uGCAgaauuaAU...uucUGAAAGAUA 101 A :::A GGUGCUAA+ CC UGC::: +A U:::GAA GAUA 139291 ugguaaauacAGGUGAAUaGGUGCUAAAACCugUGCGAGGC-UACaggUCUCGAACGAUA 139349 )))) 102 AGAg 105 AGAG 139350 AGAG 139353 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30474,sp|AE017014.1|AE017014 Bacillus cereus ATCC 14579 section 17 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGAGGUGGAGGGACUGUGCCCUGUGAAGCCCGGCAACCGUCAACUUAUGUUGAAAUGGUGCCAAUUCCUGCAAAGCAAAUGCUUUGAGAGAUGAGAG hit 40 : 59727 59620 (rev) 112.83 bits ((((((((,,,,,,<<<---<<<____._>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAGAGGuGGAGGGACUG.GCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCU:AUCAAGAGAGG:GGAGGGACUG GCCCU UGAA:CC C:GCAACC::CA U+ 241128 CUCUUAUCAAGAGAGGUGGAGGGACUGuGCCCUGUGAAGCC-CGGCAACCGUCAACUUau 241186 ___>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 +UG::A GGUGC:AAUUCCUGCA:A AAU U:UGA+AGAU:AGAG 241187 GUUGAAAUGGUGCCAAUUCCUGCAAAGCAAAUgCUUUGAGAGAUGAGAG 241235 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30475,sp|AE017015.1|AE017015 Bacillus cereus ATCC 14579 section 18 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: GUCUUAUCAAGAAAAGGUGGAGGGACAGGCCCGAUGAAACCUUGGCAACAGCCGUAUAACGGAAUUGUGCCAAAUCCUGCAGGUAGUAAUCCUGAGAGAUAAGAA hit 41 : 186161 186057 (rev) 107.15 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 UCUUAUCAAGA AGGUGGAGGGAC GGCCC+AUGAAACCU :GCAAC:::C U+U AA 89874 GUCUUAUCAAGAAaAGGUGGAGGGACAGGCCCGAUGAAACCUUGGCAACAGCCGUAU-AA 89932 _>>>-->>>>>>,,,,,,,,<<<<__._____>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaau.uaAUuucUGAAAGAUAAGAg 105 G::A :GUGC:AA+UCCUGCAG: UAA U:CUGA+AGAUAAGA 89933 CGGAAUUGUGCCAAAUCCUGCAGGUAgUAA-UCCUGAGAGAUAAGAA 89978 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30476,sp|AE017024.1|AE017024 Bacillus anthracis str. Ames section 1 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UACUUAUCCAGAGAGGUAGAGGGACUGGCCCUAUGACACCUCAGCAGCGGGUUCUGUAAUAGGAACACCGUGCUAAUUCCAGCAAGCAAGUCUUGAAAGAUAAGUG hit 42 : 185584 185689 (fwd) 96.44 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 : CUUAUC+AGAGAGGU GAGGGACUGGCCCUAUGA ACCUCAGCA:C G :+ U + 185584 UACUUAUCCAGAGAGGUAGAGGGACUGGCCCUAUGACACCUCAGCAGCGGGUUCUGUaau 185643 ___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A : CA+ G:GCUAAUUCC+GCA:: A U::UGAAAGAUAAG : 185644 AGGAACACCGUGCUAAUUCCAGCAAGC-AAG-UCUUGAAAGAUAAGUG 185689 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30476,sp|AE017024.1|AE017024 Bacillus anthracis str. Ames section 1 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: AUUGUAUCAAGAGAGGUGGAGGGACUGGCCCUUUGAAACCUCGGCAGCAGGUUCAUUUUUGAAUACUGUGCCACUUCCUGCAAGCUUUAUAGCUUGAAAGAUAGAAU hit 43 : 197187 197081 (rev) 97.44 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 U::UAUCAAGAGAGGUGGAGGGACUGGCCCU UGAAACCUC:GCA:C: :+ +U+ ++ 92843 AUUGUAUCAAGAGAGGUGGAGGGACUGGCCCUUUGAAACCUCGGCAGCAGGUUCAUUuUU 92902 _>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 : A+:G:GC:A UUCCUGCA:: UU+AU +::UGAAAGAUA::A 92903 GAAUACUGUGCCACUUCCUGCAAGCUUUAUaGCUUGAAAGAUAGAAU 92949 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30476,sp|AE017024.1|AE017024 Bacillus anthracis str. Ames section 1 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGUGGCGGAGGGACUGGCCCGAUGAUGCCCGGCAACCGAGCUUAUGACGUAUAAGCUAAGGUGCUAAUUCCUGCAAAAUGAGUUUUCGUUUUGGAAGAUAAGAG hit 44 : 177274 177160 (rev) 116.81 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 CUCUUAUCAAGAG+GG:GGAGGGACUGGCCC+AUGA :CC C:GCAACC:A UU++ 112756 CUCUUAUCAAGAGUGGCGGAGGGACUGGCCCGAUGAUGCC-CGGCAACCGAGCUUAUgac 112814 ....___>>>-->>>>>>,,,,,,,,<<<<__...____.._>>>>,,,)))))))) 58 ....AaugucAaGGUGCuAAUUCCuGCAgaau...uaAU..uucUGAAAGAUAAGAg 105 AA U:A GGUGC:AAUUCCUGCA:AAU U++U UU:UG+AAGAUAAGAG 112815 guauAAGCUAA-GGUGCUAAUUCCUGCAAAAUgagUUUUcgUUUUGGAAGAUAAGAG 112870 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30477,sp|AE017025.1|AE017025 Bacillus anthracis str. Ames section 2 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUCCAGAGAGGUGGAGGGACUGGCCCUACGAUACCUCAGCAACGGGUUUUUUUAAUACCGUGCUAACUCCAGCAAGCCAUAUAAAGGCUUGGAAGAUGAGAA hit 45 : 30636 30742 (fwd) 106.67 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 :UCU:AUC+AGAGAGGUGGAGGGACUGGCCCUA GA ACCUCAGCAAC :+UU ++U 30636 UUCUUAUCCAGAGAGGUGGAGGGACUGGCCCUACGAUACCUCAGCAACGGGUUUU--UUU 30693 >>>-->>>>>>,,,,,,,,<<<<__...____._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau...uaAU.uucUGAAAGAUAAGAg 105 : A+ GUGCUAA UCC+GCA:: UAA+ +::UG+AAGAU:AGA: 30694 AAUACCGUGCUAACUCCAGCAAGCCauaUAAAgGCUUGGAAGAUGAGAA 30742 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30477,sp|AE017025.1|AE017025 Bacillus anthracis str. Ames section 2 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: UCUUUAUCAAGAGAGGCAGAGGGACCGGCCCUUUGAAGCCCAGCAACCUCAGUUUAUACAAACUGAAUAGGUGCUAAUUCCUGCAAAAUGCAUUGCAUUUUGAAAGAUAAAAC hit 46 : 81160 81048 (rev) 97.27 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :::UUAUCAAGAGAGG: GAGGGAC GGCCCU UGAA:CC CAGCAACC::: UUUA 209555 UCUUUAUCAAGAGAGGCAGAGGGACCGGCCCUUUGAAGCC-CAGCAACCUCAGUUUAuac 209613 .___>>>--.>>>>>>,,,,,,,,<<<<__.____..._>>>>,,,)))))))) 58 .AaugucAa.GGUGCuAAUUCCuGCAgaau.uaAU...uucUGAAAGAUAAGAg 105 AA :::A GGUGCUAAUUCCUGCA:AAU A+U UU:UGAAAGAUAA::: 209614 aAACUGAAUaGGUGCUAAUUCCUGCAAAAUgCAUUgcaUUUUGAAAGAUAAAAC 209667 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30480,sp|AE017028.1|AE017028 Bacillus anthracis str. Ames section 5 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AGCUUAUCAAGAGAAGCGGAGGGAACUGGCCCGGCGAAGCUCGGCAACCUGCUUAUAGAAAGCAAGGUGCUAAAUCCAGCAAAAUGGAAUCCAUUUUGAAAGAUAAGGU hit 47 : 201911 202019 (fwd) 111.88 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____._ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.A 58 :CUUAUCAAGAGA:G:GGAGGGA CUGGCCC+ GAA:C: C:GCAACC::C+U+UA A 201911 AGCUUAUCAAGAGAAGCGGAGGGAaCUGGCCCGGCGAAGCU-CGGCAACCUGCUUAUAgA 201969 __>>>-->>>>>>,,,,,,,,<<<<__.____..._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaau.uaAU...uucUGAAAGAUAAGAg 105 A+G::A GGUGC:AA+UCC+GCA:AAU +AAU UU:UGAAAGAUAAG: 201970 AAGCAA-GGUGCUAAAUCCAGCAAAAUgGAAUccaUUUUGAAAGAUAAGGU 202019 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30480,sp|AE017028.1|AE017028 Bacillus anthracis str. Ames section 5 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUAAAGAGAGGCGGAGGGACUGGCCCUACGAUGCCUCGGCAGCGGACUCGAUUUUAGAGUGCUGUGCCAAAUCCAGCAAGCAUGUGCUUGAAAGAUGAGAA hit 48 : 214605 214710 (fwd) 92.76 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCU:AU:AAGAGAGG:GGAGGGACUGGCCCUA GA :CCUC:GCA:C AC+ ++ 214605 UUCUUAUAAAGAGAGGCGGAGGGACUGGCCCUACGAUGCCUCGGCAGCGGACUCGAUuuu 214664 ___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A +GU G:GC:AA+UCC+GCA:: + U+::UGAAA:AU:AGA: 214665 AGAGUGC-UGUGCCAAAUCCAGCAAGC-AUGUGCUUGAAAGAUGAGAA 214710 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30484,sp|AE017032.1|AE017032 Bacillus anthracis str. Ames section 9 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UACUUAUCCAGAGAGGUGGAGGGAACGGCCCUAUGAAACCUCAGCAACCCCUAUGUAAAUGCAUAGGAAGGUGCUAAUUCCGCAGAGAACACGUUGUGUUUUUUGGAAGAUGAGAG hit 49 : 133458 133573 (fwd) 96.22 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 : CU:AUC+AGAGAGGUGGAGGGA GGCCCUAUGAAACCUCAGCAACC:::AU UA 133458 UACUUAUCCAGAGAGGUGGAGGGAACGGCCCUAUGAAACCUCAGCAACCCCUAUGUAaau 133517 .___>>>-->>>>>>,,,,,..,,,<<<<__..____..._>>>>,,,)))))))) 58 .AaugucAaGGUGCuAAUUC..CuGCAgaau..uaAU...uucUGAAAGAUAAGAg 105 AU:::AAGGUGCUAAUUC C+G:::A U+ U UU:::+AAGAU:AG : 133518 gCAUAGGAAGGUGCUAAUUCcgCAGAGAACAcgUUGUguuUUUUGGAAGAUGAGAG 133573 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30486,sp|AE017034.1|AE017034 Bacillus anthracis str. Ames section 11 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: UUCUUAUCCAGAGAGGUGGAGGGACUGGCCCGAUGAAACCCAGCAACCGCGAUGCAGGUGCUAAUUCCAGCAGAACAAAUUUGUUCUGGGAGAUAAGAC hit 50 : 185225 185127 (rev) 106.94 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 :UCUUAUC+AGAGAGGUGGAGGGACUGGCCC+AUGAAACC CAGCAACCG: AU 105209 UUCUUAUCCAGAGAGGUGGAGGGACUGGCCCGAUGAAACC-CAGCAACCGC------GAU 105261 >>>-->>>>>>,,,,,,,,<<<<__.____.._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau.uaAU..uucUGAAAGAUAAGAg 105 :CA GGUGCUAAUUCC+GCAGAA A+U UUCUG++AGAUAAGA: 105262 -GCA-GGUGCUAAUUCCAGCAGAACaAAUUugUUCUGGGAGAUAAGAC 105307 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30486,sp|AE017034.1|AE017034 Bacillus anthracis str. Ames section 11 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: UUCUUAUCACGAGAGGUGGAGGGACUGGCCCUAUGAAACCUCGGCAGCGGAUUCGUUAUGAAUACUGUGCCAAUUCCAGCAAGGUAACUUGAAAGAUAAGAA hit 51 : 46775 46674 (rev) 107.01 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 :UCUUAUCA GAGAGGUGGAGGGACUGGCCCUAUGAAACCUC:GCA:C :+ U+A+ 243659 UUCUUAUCACGAGAGGUGGAGGGACUGGCCCUAUGAAACCUCGGCAGCGGAUUCGUUAUG 243718 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 : A+ G:GC:AAUUCC+GCA:: UAA ::UGAAAGAUAAGA: 243719 AAUACUGUGCCAAUUCCAGCAAGG-UAA--CUUGAAAGAUAAGAA 243760 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30489,sp|AE017037.1|AE017037 Bacillus anthracis str. Ames section 14 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUCAAGAGCAGGUGGAGGGACGAGCCCGACGAAACCCGGCAACCGAUCUACAUAAUUGUAGACACGGUGCUAAUUCUCGCAGCAUUACGCUGACAGAUAAGGA hit 52 : 93146 93253 (fwd) 92.79 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 : CUUAUCAAGAG AGGUGGAGGGAC GCCC+A GAAACC C:GCAACCGA: U+ A 93146 UUCUUAUCAAGAGcAGGUGGAGGGACGAGCCCGACGAAACC-CGGCAACCGAUCUACAua 93204 ....___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 ....AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +A : CA+GGUGC:AAUUC GCAG:A U+A :CUGA AGAUAAG : 93205 auugUAGA-CACGGUGCUAAUUCUCGCAGCA-UUA-CGCUGACAGAUAAGGA 93253 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30489,sp|AE017037.1|AE017037 Bacillus anthracis str. Ames section 14 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: UUCUUAUCUAGAGAGGUAGAGGGACUGGCCCUAUGACGCCUCAGCAACCAUUAACAUUUGUUAAUAAGGUGCUAAUUCCAGCAAAUUGCGAAAAAUUUGACAGAUGAGAA hit 53 : 274498 274607 (fwd) 109.39 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.._ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa..A 58 :UCU:AUC AGAGAGG: GAGGGACUGGCCCUAUGA :CCUCAGCAACC:::A ++ 274498 UUCUUAUCUAGAGAGGUAGAGGGACUGGCCCUAUGACGCCUCAGCAACCAUUAACAUuuG 274557 __>>>-->>>>>>,,,,,,,,<<<<__..____._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaau..uaAU.uucUGAAAGAUAAGAg 105 +U:::AAGGUGCUAAUUCC+GCA:A U +AA+ U:UGA AGAU:AGA: 274558 UUAAUAAGGUGCUAAUUCCAGCAAAUUgcGAAAaAUUUGACAGAUGAGAA 274607 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30489,sp|AE017037.1|AE017037 Bacillus anthracis str. Ames section 14 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUUGAGAGCGGUGGAGGGAAAGGCCCUGUGAAACCCGGCAACCUUCAAACGAAAUGUUUGAAACGGUGCUAAUACCUGCAAAACGAAUGUUUUGCAUAAUAAGAG hit 54 : 274295 274186 (rev) 100.57 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 CUCUUAU: AGAG GGUGGAGGGA GGCCCU UGAAACC C:GCAACC::CA + 15912 CUCUUAUUGAGAGCGGUGGAGGGAAAGGCCCUGUGAAACC-CGGCAACCUUCAAACGaaa 15970 ..___>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 ++UG::A+GGUGC:AAU CCUGCA:AA +AAU UU:UG A :AUAAGAG 15971 ugUUUGAAACGGUGCUAAUACCUGCAAAACGAAUgUUUUGCAUAAUAAGAG 16021 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30489,sp|AE017037.1|AE017037 Bacillus anthracis str. Ames section 14 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGCAGGUGGAGGGAUUUGGCCCGAUGAAGCCCAGCAACCGACCGUAAUACCAUUGUGAAAUGGGGCGUUUAUGACGCCAAAAGGCACGGUGCUAAUUCCAGCAGAAAGUAAAACUUUCUGGCAGAUAAGAG hit 55 : 90953 90812 (rev) 112.22 bits ((((((((,,,,,.,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____. 1 cUCUUAUCaAGAG.AGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa. 57 CUCUUAUCAAGAG AGG:GGAGGGA UGGCCC+AUGAA:CC CAGCAACCG:C U+A 199254 CUCUUAUCAAGAGcAGGUGGAGGGAuUUGGCCCGAUGAAGCC-CAGCAACCGACCGUAAu 199312 ...............................___>>>-->>>>>>,,,,,,,,<<<<__. 58 ...............................AaugucAaGGUGCuAAUUCCuGCAgaau. 85 AA+G:CA+GGUGCUAAUUCC+GCAGAA 199313 accauugugaaauggggcguuuaugacgccaAAAGGCACGGUGCUAAUUCCAGCAGAAAg 199372 ____..._>>>>,,,)))))))) 86 uaAU...uucUGAAAGAUAAGAg 105 UAA+ UUCUG+ AGAUAAGAG 199373 UAAAacuUUCUGGCAGAUAAGAG 199395 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30491,sp|AE017039.1|AE017039 Bacillus anthracis str. Ames section 16 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCCCGAGCUGGCGGAGGGACAGGCCCGAUGAAGCCCAGCAACCUCACUUGUAGUGGUAAAUACAGGUGAAUAGGUGCUAAAACCUGUGCGAGGCUACAGGUCUCGAACGAUAAGAG hit 56 : 173784 173663 (rev) 79.87 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCUUAUC+ GAG +GG:GGAGGGAC GGCCC+AUGAA:CC CAGCAACC::: UU + 118021 CUCUUAUCCCGAGcUGGCGGAGGGACAGGCCCGAUGAAGCC-CAGCAACCUCACUUGUag 118079 ..........___>>>--.>>>>>>,,,,,,..,,<<<<______..._>>>>,,,)))) 58 ..........AaugucAa.GGUGCuAAUUCC..uGCAgaauuaAU...uucUGAAAGAUA 101 A :::A GGUGCUAA+ CC UGC::: +A U:::GAA GAUA 118080 ugguaaauacAGGUGAAUaGGUGCUAAAACCugUGCGAGGC-UACaggUCUCGAACGAUA 118138 )))) 102 AGAg 105 AGAG 118139 AGAG 118142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30492,sp|AE017040.1|AE017040 Bacillus anthracis str. Ames section 17 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGAGGUGGAGGGACUGUGCCCUGUGAAGCCCGGCAACCGUCAACUUAUGUUGAAAUGGUGCCAAUUCCUGCAAAGCAAAUGCUUUGAGAGAUGAGAG hit 57 : 68333 68226 (rev) 112.83 bits ((((((((,,,,,,<<<---<<<____._>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAGAGGuGGAGGGACUG.GCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCU:AUCAAGAGAGG:GGAGGGACUG GCCCU UGAA:CC C:GCAACC::CA U+ 222873 CUCUUAUCAAGAGAGGUGGAGGGACUGuGCCCUGUGAAGCC-CGGCAACCGUCAACUUau 222931 ___>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 +UG::A GGUGC:AAUUCCUGCA:A AAU U:UGA+AGAU:AGAG 222932 GUUGAAAUGGUGCCAAUUCCUGCAAAGCAAAUgCUUUGAGAGAUGAGAG 222980 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30493,sp|AE017041.1|AE017041 Bacillus anthracis str. Ames section 18 of 18 of the complete genome. ----isReversed: 1 ----hitSequence: GUCUUAUCAAGAAAAGGUGGAGGGACAGGCCCGAUGAAACCUUGGCAACAGCCGUAUAACGGAAUUGUGCCAAAUCCUGCAGGUAAUAAAUCCUGAGAGAUAAGAA hit 58 : 177535 177430 (rev) 107.70 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 UCUUAUCAAGA AGGUGGAGGGAC GGCCC+AUGAAACCU :GCAAC:::C U+U AA 86970 GUCUUAUCAAGAAaAGGUGGAGGGACAGGCCCGAUGAAACCUUGGCAACAGCCGUAU-AA 87028 _>>>-->>>>>>,,,,,,,,<<<<__._____>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaau.uaAUuucUGAAAGAUAAGAg 105 G::A :GUGC:AA+UCCUGCAG: UAA+U:CUGA+AGAUAAGA 87029 CGGAAUUGUGCCAAAUCCUGCAGGUAaUAAAUCCUGAGAGAUAAGAA 87075 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #31346,sp|AF008220.1|AF008220 Bacillus subtilis rrnB-dnaB genomic region. ----isReversed: 0 ----hitSequence: CUCUUAUCCCGAGCUGGCGGAGGGACAGGCCCUAUGAAGCCCAGCAACCGGUUUCUCUGUUAUUUAUUAUGUUCAACUGAGUGAGACAACCAAGGUGCUAACCUGUUGCAAGGUUGUAUGAUUCCUUGAGCGAUAAGAG hit 59 : 49783 49921 (fwd) 89.17 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCUUAUC+ GAG +GG:GGAGGGAC GGCCCUAUGAA:CC CAGCAACCG::+U U 49783 CUCUUAUCCCGAGcUGGCGGAGGGACAGGCCCUAUGAAGCC-CAGCAACCGGUUUCUCug 49841 ..........................___>>>-->>>>>>,,,,,.,,,<<<<__.____ 58 ..........................AaugucAaGGUGCuAAUUC.CuGCAgaau.uaAU 89 A +::CAAGGUGCUAA UGCA:: U ++AU 49842 uuauuuauuauguucaacugagugagACAACCAAGGUGCUAACCUgUUGCAAGGUuGUAU 49901 ...._>>>>,,,)))))))) 90 ....uucUGAAAGAUAAGAg 105 ::UGA+ GAUAAGAG 49902 gauuCCUUGAGCGAUAAGAG 49921 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #33353,sp|AF027868.1|AF027868 Bacillus subtilis chromosome region between terC and odhAB. ----isReversed: 1 ----hitSequence: UUUCUAUCCAGAGAGGUGGAGGGACUGGCCCUAUGAAACCUCGGCAACAUUAUUGUGCCAAUUCCAGCAAGCGCUAGCUUGAAAGAUAGGAA hit 60 : 5245 5154 (rev) 94.03 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_.______ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgaca.UuUaAa 59 :U::UAUC+AGAGAGGUGGAGGGACUGGCCCUAUGAAACCUC:GCAAC: +A 82256 UUUCUAUCCAGAGAGGUGGAGGGACUGGCCCUAUGAAACCUCGGCAACA----u----UA 82307 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 U :GUGC:AAUUCC+GCA:: +A +::UGAAAGAUA::A: 82308 U-----UGUGCCAAUUCCAGCAAGCGCUA-GCUUGAAAGAUAGGAA 82347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #10272,sp|AF269983.1|AF269983 Staphylococcus epidermidis strain SR1 clone step.1038e03 genomic sequence. ----isReversed: 0 ----hitSequence: ACCUUAUUUUGAGAAGCUGAGGGAUUUGGCCCAUAGAAGCUUCAGCAACCGACUUUAAAUAGCACGGUGCUAAUACCAACGAGCAACUCGAAUGAUAAGUA hit 61 : 571 671 (fwd) 79.05 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 ::CUUAU: GAGA:G: GAGGGA UGGCCC GAA:C:UCAGCAACCG: +UU+ AA 571 ACCUUAUUUUGAGAAGCUGAGGGAuUUGGCCCAUAGAAGCUUCAGCAACCGACUUUA-AA 629 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 U :CA+GGUGCUAAU CC+ C::: AA :::GAA :AUAAG:: 630 UAGCACGGUGCUAAUACCAACGAGC--AA--CUCGAAUGAUAAGUA 671 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #10590,sp|AF270301.1|AF270301 Staphylococcus epidermidis strain SR1 clone step.3049f07b genomic sequence. ----isReversed: 1 ----hitSequence: CUCUUAUCCUGAGUGGUGGAGGGACAUGGACCCAAUGAAACCCAGCAACCUCUUUAUUUAAAGAAAGGUGCCAAACCGUUUGCAGACAAAUAUGGUCUGAACGAUAAGAG hit 62 : 145 36 (rev) 98.68 bits ((((((((,,,,,,<<<---<<<_.____.>>>------>>>,,<<<-<<<<<<______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGG.CCCUAUGAAaCCUCaGCAACCgacaUuUaA 58 CUCUUAUC+ GAG+GGUGGAGGGA UGG CCC AUGAAACC C:GCAACC:::+U+U++ 2718 CUCUUAUCCUGAGUGGUGGAGGGAcAUGGaCCCAAUGAAACC-CAGCAACCUCUUUAUUU 2776 __>>>-->>>>>>,,,,,..,,,<<<<__.____._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUC..CuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 A+:::AAGGUGC:AA+ C UGCAGA +AU +UCUGAA GAUAAGAG 2777 AAAGAAAGGUGCCAAACCguUUGCAGACAaAUAUgGUCUGAACGAUAAGAG 2827 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #407,sp|AL591973.1|AL591973 Listeria monocytogenes strain EGD, complete genome, segment 1/12 ----isReversed: 0 ----hitSequence: UUCUUAUCAAGAGUGGUGGAGGGAAUCGGCCCAGUGAAACCCAGCAGCGGAGCGCAAGUUCUAUGCUAAUUCCGAUCAGAAGUAAUAUUCUGGCAGAUAAGUA hit 63 : 137133 137235 (fwd) 78.93 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 : CUUAUCAAGAG+GGUGGAGGGA GGCCC UGAAACC CAGCA: GA AA 137133 UUCUUAUCAAGAGUGGUGGAGGGAaUCGGCCCAGUGAAACC-CAGCAGCGGAGCGC--AA 137189 _>>>-->>>>>>,,,,,.,,,<<<<______._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUC.CuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 UC :GCUAAUUC + CAGAA UAAU UUCUG+ AGAUAAG : 137190 GUUC--UAUGCUAAUUCcGAUCAGAAGUAAUaUUCUGGCAGAUAAGUA 137235 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #408,sp|AL591974.1|AL591974 Listeria monocytogenes strain EGD, complete genome, segment 2/12 ----isReversed: 1 ----hitSequence: CUCUUAUCGAGAGCGGCAGAGGGACUGGCCCGAUGAAGCCCGGCAACCUAACUUUAUUUAAGCAUAAAGUGAAGGUGCUAAUUCCAGCAAAAUGGUGUAUUCCGUUUUGGUAGAUAAGAG hit 64 : 109385 109266 (rev) 112.78 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 CUCUUAUC AGAG GG: GAGGGACUGGCCC+AUGAA:CC C:GCAACC:A UUUA 50666 CUCUUAUCGAGAGCGGCAGAGGGACUGGCCCGAUGAAGCC-CGGCAACCUAACUUUAuuu 50724 ......___>>>-->>>>>>,,,,,,,,<<<<__...____...._>>>>,,,))))))) 58 ......AaugucAaGGUGCuAAUUCCuGCAgaau...uaAU....uucUGAAAGAUAAGA 104 AA+ U:AAGGUGC:AAUUCC+GCA:AAU ++AU UU:UG+ AGAUAAGA 50725 aagcauAAAGUGAAGGUGCUAAUUCCAGCAAAAUgguGUAUuccgUUUUGGUAGAUAAGA 50784 ) 105 g 105 G 50785 G 50785 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #409,sp|AL591975.1|AL591975 Listeria monocytogenes strain EGD, complete genome, segment 3/12 ----isReversed: 1 ----hitSequence: UUCUUAUCACGAAAGGUGGAGGGACUGGCCCUUUGAAGCCUUAGCAACCGGAAUUUAUUUUCACGGUGCUAAUUCCAGCAGUAUAUUCUGAAAGAUAAGUC hit 65 : 277926 277826 (rev) 107.92 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 : CUUAUCA GA AGG:GGAGGGACUGGCCCU UGAA:CCU AGCAACCG::AUUU A+U 2125 UUCUUAUCACGAAAGGUGGAGGGACUGGCCCUUUGAAGCCUUAGCAACCGGAAUUU-AUU 2183 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 ::CA+GGUGCUAAUUCC+GCAG A +A U CUGAAAGAUAAG : 2184 UUCACGGUGCUAAUUCCAGCAGUA--UA-UUCUGAAAGAUAAGUC 2225 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #410,sp|AL591976.1|AL591976 Listeria monocytogenes strain EGD, complete genome, segment 4/12 ----isReversed: 0 ----hitSequence: AACUUAUCAAGAAAGGUGGAGGGUUCUGGCCCCGUGAAGCCUUGGCAACCGGAUUUUUCACGGUGCCAAAUCCAGCAGGUAACACUGACAGAUAAGGC hit 66 : 242770 242867 (fwd) 86.52 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 +CUUAUCAAGA AGG:GGAGGG CUGGCCC UGAA:CCU :GCAACCG::+UU 242770 AACUUAUCAAGAAAGGUGGAGGGUuCUGGCCCCGUGAAGCCUUGGCAACCGGAUUU---- 242825 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 ::CA+GGUGC:AA+UCC+GCAG UAA CUGA AGAUAAG+ 242826 -UUCACGGUGCCAAAUCCAGCAGG--UAA-CACUGACAGAUAAGGC 242867 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #414,sp|AL591980.1|AL591980 Listeria monocytogenes strain EGD, complete genome, segment 8/12 ----isReversed: 1 ----hitSequence: CUCUUAUAAUGAGUGGUAGAGGGACUGGCCCGUUGAAACCCGGCAACCUUUCAAUACGUUGAAAAGGUGCUAAAUCCUGCGAAGUGUGAUGCUUCGAGAGAUAAGAG hit 67 : 89597 89491 (rev) 107.92 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.._ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa..A 58 CUCUUAU:A GAG+GGU GAGGGACUGGCCC+ UGAAACC C:GCAACC::: +UA + 13454 CUCUUAUAAUGAGUGGUAGAGGGACUGGCCCGUUGAAACC-CGGCAACCUUUCAAUAcgU 13512 __>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 + :::A GGUGC:AA+UCCUGC::A U U AU U::GA+A:AUAAGAG 13513 UGAAAA-GGUGCUAAAUCCUGCGAAGUgUGAUgCUUCGAGAGAUAAGAG 13560 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #414,sp|AL591980.1|AL591980 Listeria monocytogenes strain EGD, complete genome, segment 8/12 ----isReversed: 1 ----hitSequence: CUCUUAUCCAGAGCGGUAGAGGGACUGACCCUUUGAAGCCCAGCAACCUACACAUAUAAGUGAAAGGUGCUAAUCUGUUGCAGGAGUAUUAUCUUCUGAACGAUGAGAG hit 68 : 66651 66543 (rev) 98.71 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 CUCU:AUC+AGAG GG: GAGGGACUG CCCU UGAA:CC CAGCAACC:::A +UA AA 36400 CUCUUAUCCAGAGCGGUAGAGGGACUGACCCUUUGAAGCC-CAGCAACCUACACAUAuAA 36458 _>>>-->>>>>>,,,,,.,,,<<<<__..____._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUC.CuGCAgaau..uaAU.uucUGAAAGAUAAGAg 105 :::AAGGUGCUAAU UGCAG:A U+AU U:CUGAA GAU:AGAG 36459 GUGAAAGGUGCUAAUCUgUUGCAGGAGuaUUAUcUUCUGAACGAUGAGAG 36508 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #417,sp|AL591983.1|AL591983 Listeria monocytogenes strain EGD, complete genome segment 11/12 ----isReversed: 1 ----hitSequence: AUCUUAUCCAGAGUGGUGGAGGGAAAUGCCCUAUGAAGCCCAGCAACCUAAACAAUAAUUCAUUAUGUGUUUAAGGUGCUAAGUCAUGCAGAACAACUAAUUGUUCUGAAAGAUGAGAA hit 69 : 96176 96058 (rev) 103.40 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCU:AUC+AGAG+GG:GGAGGGA GCCCUAUGAA:CC CAGCAACC:A:A +++ 227875 AUCUUAUCCAGAGUGGUGGAGGGAAAUGCCCUAUGAAGCC-CAGCAACCUAAACAAUaau 227933 ........___>>>-->>>>>>,,,,,,,,<<<<__...____.._>>>>,,,))))))) 58 ........AaugucAaGGUGCuAAUUCCuGCAgaau...uaAU..uucUGAAAGAUAAGA 104 + U:U:A GGUGCUAA UC UGCAGAA UAAU UUCUGAAAGAU:AGA 227934 ucauuaugUGUUUAA-GGUGCUAAGUCAUGCAGAACaacUAAUugUUCUGAAAGAUGAGA 227992 ) 105 g 105 : 227993 A 227993 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #419,sp|AL596163.1|AL596163 Listeria innocua Clip11262 complete genome, segment 1/12 ----isReversed: 0 ----hitSequence: UUCUUAUCCAGAGUGGUGGAGGGAAUCGGCCCAGUGAAACCCGGCAGCGGAGCGCAAGUUCUAUGCUAAUUCCGAUCAGAAGUAAUAUUCUGGCAGAUAAGUA hit 70 : 172398 172500 (fwd) 77.19 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 : CUUAUC+AGAG+GGUGGAGGGA GGCCC UGAAACC C:GCA: GA AA 172398 UUCUUAUCCAGAGUGGUGGAGGGAaUCGGCCCAGUGAAACC-CGGCAGCGGAGCGC--AA 172454 _>>>-->>>>>>,,,,,.,,,<<<<______._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUC.CuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 UC :GC:AAUUC + CAGAA UAAU UUCUG+ AGAUAAG : 172455 GUUC--UAUGCUAAUUCcGAUCAGAAGUAAUaUUCUGGCAGAUAAGUA 172500 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #420,sp|AL596164.1|AL596164 Listeria innocua Clip11262 complete genome, segment 2/12 ----isReversed: 1 ----hitSequence: CUCUUAUCGAGAGCGGCAGAGGGACUGGCCCGAUGAAGCCCGGCAACCUAACUUUAUUUAAGCGUAAAGUGAAGGUGCUAAUUCCAGCAAAAUGGUGUAUUCCGUUUUGGUAGAUAAGAG hit 71 : 95936 95817 (rev) 112.78 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 CUCUUAUC AGAG GG: GAGGGACUGGCCC+AUGAA:CC C:GCAACC:A UUUA 128715 CUCUUAUCGAGAGCGGCAGAGGGACUGGCCCGAUGAAGCC-CGGCAACCUAACUUUAuuu 128773 ......___>>>-->>>>>>,,,,,,,,<<<<__...____...._>>>>,,,))))))) 58 ......AaugucAaGGUGCuAAUUCCuGCAgaau...uaAU....uucUGAAAGAUAAGA 104 AA+ U:AAGGUGC:AAUUCC+GCA:AAU ++AU UU:UG+ AGAUAAGA 128774 aagcguAAAGUGAAGGUGCUAAUUCCAGCAAAAUgguGUAUuccgUUUUGGUAGAUAAGA 128833 ) 105 g 105 G 128834 G 128834 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #421,sp|AL596165.1|AL596165 Listeria innocua Clip11262 complete genome, segment 3/12 ----isReversed: 1 ----hitSequence: UUCUUAUCACGAAAGGUGGAGGGACUGGCCCUUUGAAGCCUUAGCAACCGGAAUUUAUUUUCACGGUGCUAAUUCCAGCAGUAUAUUCUGAAAGAUAAGUC hit 72 : 180914 180814 (rev) 107.92 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 : CUUAUCA GA AGG:GGAGGGACUGGCCCU UGAA:CCU AGCAACCG::AUUU A+U 68137 UUCUUAUCACGAAAGGUGGAGGGACUGGCCCUUUGAAGCCUUAGCAACCGGAAUUU-AUU 68195 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 ::CA+GGUGCUAAUUCC+GCAG A +A U CUGAAAGAUAAG : 68196 UUCACGGUGCUAAUUCCAGCAGUA--UA-UUCUGAAAGAUAAGUC 68237 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #422,sp|AL596166.1|AL596166 Listeria innocua Clip11262 complete genome, segment 4/12 ----isReversed: 0 ----hitSequence: AACUUAUCAAGAAAGGUGGAGGGUUCUGGCCCAGUGAAGCCUUGGCAACCGGACUUUUCACGGUGCCAAAUCCAGCAGUAUCACUGACAGAUAAGGC hit 73 : 166748 166844 (fwd) 87.02 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 +CUUAUCAAGA AGG:GGAGGG CUGGCCC UGAA:CCU :GCAACCG:: UU 166748 AACUUAUCAAGAAAGGUGGAGGGUuCUGGCCCAGUGAAGCCUUGGCAACCGGACUU---- 166803 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 ::CA+GGUGC:AA+UCC+GCAG: A+ :CUGA AGAUAAG+ 166804 -UUCACGGUGCCAAAUCCAGCAGU---AU-CACUGACAGAUAAGGC 166844 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #425,sp|AL596169.1|AL596169 Listeria innocua Clip11262 complete genome, segment 7/12 ----isReversed: 1 ----hitSequence: CUCUUAUCCAGAGCGGUAGAGGGACUGACCCUUUGAAGCCCAGCAACCUACACAUAUAAGUGAAAGGUGCUAAUCUGUUGCAGGAGUAAUAUCUCCUGAACGAUGAGAG hit 74 : 221462 221354 (rev) 99.98 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 CUCU:AUC+AGAG GG: GAGGGACUG CCCU UGAA:CC CAGCAACC:::A +UA AA 17589 CUCUUAUCCAGAGCGGUAGAGGGACUGACCCUUUGAAGCC-CAGCAACCUACACAUAuAA 17647 _>>>-->>>>>>,,,,,.,,,<<<<______..._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUC.CuGCAgaauuaAU...uucUGAAAGAUAAGAg 105 :::AAGGUGCUAAU UGCAG:A UAAU U:CUGAA GAU:AGAG 17648 GUGAAAGGUGCUAAUCUgUUGCAGGAGUAAUaucUCCUGAACGAUGAGAG 17697 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #426,sp|AL596170.1|AL596170 Listeria innocua Clip11262 complete genome, segment 8/12 ----isReversed: 1 ----hitSequence: CUCUUAUUAUGAGUGGUAGAGGGACUGGCCCGUUGAAACCCAGCAACCUUUCAAUUCGUUGAAAAGGUGCUAAAUCCUGCGAAGUGUGAUGCUUCGAGAGAUAAGAG hit 75 : 192 86 (rev) 110.35 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.._ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa..A 58 CUCUUAU:A GAG+GGU GAGGGACUGGCCC+ UGAAACC CAGCAACC::: +U+ + 313259 CUCUUAUUAUGAGUGGUAGAGGGACUGGCCCGUUGAAACC-CAGCAACCUUUCAAUUcgU 313317 __>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 + :::A GGUGCUAA+UCCUGC::A U U AU U::GA+A:AUAAGAG 313318 UGAAAA-GGUGCUAAAUCCUGCGAAGUgUGAUgCUUCGAGAGAUAAGAG 313365 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #428,sp|AL596172.1|AL596172 Listeria innocua Clip11262 complete genome, segment 10/12 ----isReversed: 1 ----hitSequence: AUCUUAUCCAGAGUGGUGGAGGGAAAUGCCCUGUGAAACCCAGCAACCUAAACAAUAAUUCAUUAUGUGUUUAAGGUGCUAAGUCAUGCAGAACAACGAUUUGUUCUGAAAGAUGAGAA hit 76 : 176254 176136 (rev) 100.15 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCU:AUC+AGAG+GGUGGAGGGA GCCCU UGAAACC CAGCAACC:A:A +++ 71797 AUCUUAUCCAGAGUGGUGGAGGGAAAUGCCCUGUGAAACC-CAGCAACCUAAACAAUaau 71855 ........___>>>-->>>>>>,,,,,,,,<<<<__...____.._>>>>,,,))))))) 58 ........AaugucAaGGUGCuAAUUCCuGCAgaau...uaAU..uucUGAAAGAUAAGA 104 + U:U:A GGUGCUAA UC UGCAGAA +A+U UUCUGAAAGAU:AGA 71856 ucauuaugUGUUUAA-GGUGCUAAGUCAUGCAGAACaacGAUUugUUCUGAAAGAUGAGA 71914 ) 105 g 105 : 71915 A 71915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #929,sp|AP001510.1|AP001510 Bacillus halodurans genomic DNA, section 4/14. ----isReversed: 1 ----hitSequence: UUCUUAUCCAGAGUGGUGGAGGGACUGGCCCUGUGAAGCCCGGCAACCUCUUUUUUUAAAGAAGGUGCCAAUUCCAGCAGAACAUGAUGUUCUGAAAGAUAAGAA hit 77 : 12492 12388 (rev) 127.16 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 :UCUUAUC+AGAG+GG:GGAGGGACUGGCCCU UGAA:CC C:GCAACC:::+UUU++A+ 289659 UUCUUAUCCAGAGUGGUGGAGGGACUGGCCCUGUGAAGCC-CGGCAACCUCUUUUUUUAA 289717 >>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 :::A GGUGC:AAUUCC+GCAGAA U AU UUCUGAAAGAUAAGA: 289718 AGAA-GGUGCCAAUUCCAGCAGAACaUGAUgUUCUGAAAGAUAAGAA 289763 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #930,sp|AP001511.1|AP001511 Bacillus halodurans genomic DNA, section 5/14. ----isReversed: 0 ----hitSequence: GACUUAUCGAGAGAGGCAGAGGGACUGACCCGAUGAUGCCCGGCAACCCGUUUGUUAGCCAAGCAAACGAAGGUGCUAAUUUCAGCAGAAUGAUUUCAUUCUGGAAGAUAAGCG hit 78 : 149016 149129 (fwd) 102.41 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 : CUUAUC AGAGAGG: GAGGGACUG CCC+AUGA :CC C:GCAACC:::+U U+ 149016 GACUUAUCGAGAGAGGCAGAGGGACUGACCCGAUGAUGCC-CGGCAACCCGUUUGUUagc 149074 ....___>>>-->>>>>>,,,,,,,,<<<<__.____.._>>>>,,,)))))))) 58 ....AaugucAaGGUGCuAAUUCCuGCAgaau.uaAU..uucUGAAAGAUAAGAg 105 A+:::AAGGUGC:AAUU C+GCAGAAU ++U UUCUG+AAGAUAAG : 149075 caagCAAACGAAGGUGCUAAUUUCAGCAGAAUgAUUUcaUUCUGGAAGAUAAGCG 149129 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #931,sp|AP001512.1|AP001512 Bacillus halodurans genomic DNA, section 6/14. ----isReversed: 0 ----hitSequence: UUCUUAUCCAGAGAGGUGGAGGGAACGGCCCGAAGAAACCUCAGCAACCAGCCACGAUCCUGUGGUCAGGUGCUAAUUCCUGCAAGCAUUAUUUGCUUGAGAGAUAAGAG hit 79 : 200657 200766 (fwd) 109.08 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCUUAUC+AGAGAGGUGGAGGGA GGCCC+A GAAACCUCAGCAACC:+C A 200657 UUCUUAUCCAGAGAGGUGGAGGGAACGGCCCGAAGAAACCUCAGCAACCAGCCACGAucc 200716 ___>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 + UG+: AGGUGCUAAUUCCUGCA:: UA+U +::UGA+AGAUAAGA: 200717 UGUGGUCAGGUGCUAAUUCCUGCAAGCAuUAUUuGCUUGAGAGAUAAGAG 200766 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #937,sp|AP001518.1|AP001518 Bacillus halodurans genomic DNA, section 12/14. ----isReversed: 1 ----hitSequence: CUCUUAUCAUGAGAGGUGGAGGGACUGGCCCGAUGAAGCCCAGCAACCGCCAAGCAGCAAAUCGCUUGGAAAAGGUGCUAAUUCCUGCAAAGCGAUGCUUUGAGAGAUGAGAG hit 80 : 300422 300310 (rev) 114.98 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 CUCU:AUCA GAGAGG:GGAGGGACUGGCCC+AUGAA:CC CAGCAACC::CA A 2829 CUCUUAUCAUGAGAGGUGGAGGGACUGGCCCGAUGAAGCC-CAGCAACCGCCAAGCAgca 2887 ......___>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 58 ......AaugucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 ++ G::AAGGUGCUAAUUCCUGCA:A AU U:UGA+AGAU:AGAG 2888 aaucgcUUGGAAAAGGUGCUAAUUCCUGCAAAGC-GAUgCUUUGAGAGAUGAGAG 2941 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #937,sp|AP001518.1|AP001518 Bacillus halodurans genomic DNA, section 12/14. ----isReversed: 1 ----hitSequence: CUCUUAUCCAGAGUUGGUGGAGGGACAGGCCCGAAGAAACCCCAGCAACCAACACCUGUUAAACAAAGGUGAAAAGGUGCUAACCUGCAAGGCGUUGCCUUGAAAGAUAAGAG hit 81 : 137068 136956 (rev) 94.65 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCUUAUC+AGAG +GGUGGAGGGAC GGCCC+A GAAACC CAGCAACC ACA U 166183 CUCUUAUCCAGAGuUGGUGGAGGGACAGGCCCGAAGAAACCCCAGCAACCAACACCUGuu 166242 .....___>>>--..>>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 58 .....AaugucAa..GGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 AA GU AA GGUGCUAA CCUGCA:: +U ::UGAAAGAUAAGAG 166243 aaacaAAGGUGAAaaGGUGCUAA--CCUGCAAGGC-GUUgCCUUGAAAGAUAAGAG 166295 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #991,sp|AP003129.2|AP003129 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 1/10. ----isReversed: 0 ----hitSequence: UUCUUAUUGUGAGAAGUUGAGGGACUUGGCCCUGUGAUACUUCAGCAACCGACUUUAUAGCACGGUGCUAAAACCAACGAGUUACUCGAAUGAUAAGUA hit 82 : 15956 16054 (fwd) 80.12 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 : CUUAU: GAGA:GU GAGGGA UGGCCCU UGA AC:UCAGCAACCGAC+UU A+ 15956 UUCUUAUUGUGAGAAGUUGAGGGAcUUGGCCCUGUGAUACUUCAGCAACCGACUUU--AU 16013 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +G CA+GGUGCUAA+ CC+ C::: U+A :::GAA :AUAAG : 16014 AG-CACGGUGCUAAAACCAACGAG--UUA--CUCGAAUGAUAAGUA 16054 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #993,sp|AP003131.2|AP003131 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 3/10. ----isReversed: 0 ----hitSequence: CUCUUAUCGAGAGUGGUGGAGGGAUGUGCCCUACGAAGCCCGGCAACCGUCUUAUAUAGAAAUGGUGCCAAUUCACAUAAAGUUUUAACUUUUGAAGAUGAGAG hit 83 : 276406 276509 (fwd) 103.24 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 CUCU:AUC AGAG+GG:GGAGGGA GCCCUA GAA:CC C:GCAACC::C+U+U A++ 276406 CUCUUAUCGAGAGUGGUGGAGGGAUGUGCCCUACGAAGCC-CGGCAACCGUCUUAU-AUA 276463 >>>-->>>>>>,,,,,,,,<<<<__._____>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau.uaAUuucUGAAAGAUAAGAg 105 G::A GGUGC:AAUUC :A:A U U+A+ U:U:+AAGAU:AGAG 276464 GAAAUGGUGCCAAUUCACAUAAAGUuUUAACUUUUGAAGAUGAGAG 276509 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #997,sp|AP003135.2|AP003135 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 7/10. ----isReversed: 1 ----hitSequence: CUCUUAUCCUGAGUGGUGGAGGGACAUGGACCCAAUGAAACCCAGCAACCUCUUUUUUUAUAAAAGAAAGGUGCCAAACCGUUUGCAGACAAAUAGGUCUGAACGAUAAGAG hit 84 : 43428 43317 (rev) 97.80 bits ((((((((,,,,,,<<<---<<<_.____.>>>------>>>,,<<<-<<<<<<_____. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGG.CCCUAUGAAaCCUCaGCAACCgacaUuUa. 57 CUCUUAUC+ GAG+GGUGGAGGGA UGG CCC AUGAAACC C:GCAACC:::+UUU+ 247723 CUCUUAUCCUGAGUGGUGGAGGGAcAUGGaCCCAAUGAAACC-CAGCAACCUCUUUUUUu 247781 ..___>>>-->>>>>>,,,,,..,,,<<<<______.._>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUC..CuGCAgaauuaAU..uucUGAAAGAUAAGAg 105 AA+:::AAGGUGC:AA+ C UGCAGA AAU +UCUGAA GAUAAGAG 247782 auAAAAGAAAGGUGCCAAACCguUUGCAGAC-AAAUagGUCUGAACGAUAAGAG 247834 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #998,sp|AP003136.2|AP003136 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 8/10. ----isReversed: 1 ----hitSequence: CACUUAUCUAGAGAGGUGGAGGGACUGGCCCUAUGAAGCCUCGGCAACAUCUCGAAUGUGCCAAUUCCAGUAACCGUAAUGGUUUGAAGAUAAGCA hit 85 : 289345 289250 (rev) 95.11 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 : CUUAUC AGAGAGG:GGAGGGACUGGCCCUAUGAA:CCUC:GCAAC: U U + 18406 CACUUAUCUAGAGAGGUGGAGGGACUGGCCCUAUGAAGCCUCGGCAACA----UCU-CGA 18460 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A :GUGC:AAUUCC+G:A:: UAAU+::U:+AAGAUAAG : 18461 ---A-UGUGCCAAUUCCAGUAACCGUAAUGGUUUGAAGAUAAGCA 18501 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1010,sp|AP003193.2|AP003193 Clostridium perfringens str. 13 DNA, complete genome, section 9/10. ----isReversed: 1 ----hitSequence: AUCUUAUCAAGAGAGGUGGAGGGACUGGCCCUGUGAAACCCAGCAACCGGUAAUUCUUUGCGGUUAAAACAAUGCUGAUUUUAAAAUAAAAAAAUCAGUAGUAAUUUCCUAUGCAAAGAUUUAUAGCGGUGCUAAAUCCUGCGGUAGAAACUGAGAGAUAAGAA hit 86 : 260931 260768 (rev) 99.88 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCUUAUCAAGAGAGGUGGAGGGACUGGCCCU UGAAACC CAGCAACC:::A UU 42320 AUCUUAUCAAGAGAGGUGGAGGGACUGGCCCUGUGAAACC-CAGCAACCGGUAAUUCuuu 42378 ............................................................ - ............................................................ - 42379 gcgguuaaaacaaugcugauuuuaaaauaaaaaaaucaguaguaauuuccuaugcaaaga 42438 ___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 ++U::: +GGUGCUAA+UCCUGC:G:A +AA :C:GA+AGAUAAGA: 42439 UUUAUAGCGGUGCUAAAUCCUGCGGUA-GAA--ACUGAGAGAUAAGAA 42483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1010,sp|AP003193.2|AP003193 Clostridium perfringens str. 13 DNA, complete genome, section 9/10. ----isReversed: 1 ----hitSequence: CUCUUAUCCAGAGAGGUGGAGGGAAAAAGGCCCUAUGAAACCCGGCAACCAGUGAGAAAUCACUACGGUGCCAAUUCCGGUAAAGAAAUUCUUUACAAGAUGAGAG hit 87 : 95783 95678 (rev) 104.26 bits ((((((((,,,,,,<<<---<<<_..____>>>------>>>,,<<<-<<<<<<______ 1 cUCUUAUCaAGAGAGGuGGAGGGA..CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaA 58 CUCU:AUC+AGAGAGGUGGAGGGA GGCCCUAUGAAACC C:GCAACC::: +AA 207468 CUCUUAUCCAGAGAGGUGGAGGGAaaAAGGCCCUAUGAAACC-CGGCAACCAGUGAGAAA 207526 __>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 + :::A+GGUGC:AAUUCC G:A:A AAU U:U: AAGAU:AGAG 207527 UCACUACGGUGCCAAUUCCGGUAAAG-AAAUuCUUUACAAGAUGAGAG 207573 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1012,sp|AP003358.2|AP003358 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 1/9. ----isReversed: 0 ----hitSequence: UUCUUAUUGUGAGAAGUUGAGGGACUUGGCCCUGUGAUACUUCAGCAACCGACUUUAUAGCACGGUGCUAAAACCAACGAGUUACUCGAAUGAUAAGUA hit 88 : 15956 16054 (fwd) 80.12 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 : CUUAU: GAGA:GU GAGGGA UGGCCCU UGA AC:UCAGCAACCGAC+UU A+ 15956 UUCUUAUUGUGAGAAGUUGAGGGAcUUGGCCCUGUGAUACUUCAGCAACCGACUUU--AU 16013 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +G CA+GGUGCUAA+ CC+ C::: U+A :::GAA :AUAAG : 16014 AG-CACGGUGCUAAAACCAACGAG--UUA--CUCGAAUGAUAAGUA 16054 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1014,sp|AP003360.2|AP003360 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 3/9. ----isReversed: 0 ----hitSequence: CUCUUAUCGAGAGUGGUGGAGGGAUGUGCCCUACGAAGCCCGGCAACCGUCUUAUAUAGAAAUGGUGCCAAUUCACAUAAAGUUUUAACUUUUGAAGAUGAGAG hit 89 : 213745 213848 (fwd) 103.24 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 CUCU:AUC AGAG+GG:GGAGGGA GCCCUA GAA:CC C:GCAACC::C+U+U A++ 213745 CUCUUAUCGAGAGUGGUGGAGGGAUGUGCCCUACGAAGCC-CGGCAACCGUCUUAU-AUA 213802 >>>-->>>>>>,,,,,,,,<<<<__._____>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau.uaAUuucUGAAAGAUAAGAg 105 G::A GGUGC:AAUUC :A:A U U+A+ U:U:+AAGAU:AGAG 213803 GAAAUGGUGCCAAUUCACAUAAAGUuUUAACUUUUGAAGAUGAGAG 213848 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1017,sp|AP003363.2|AP003363 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 6/9. ----isReversed: 1 ----hitSequence: CUCUUAUCCUGAGUGGUGGAGGGACAUGGACCCAAUGAAACCCAGCAACCUCUUUUUUUAUAAAAGAAAGGUGCCAAACCGUUUGCAGACAAAUAGGUCUGAACGAUAAGAG hit 90 : 186489 186378 (rev) 97.80 bits ((((((((,,,,,,<<<---<<<_.____.>>>------>>>,,<<<-<<<<<<_____. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGG.CCCUAUGAAaCCUCaGCAACCgacaUuUa. 57 CUCUUAUC+ GAG+GGUGGAGGGA UGG CCC AUGAAACC C:GCAACC:::+UUU+ 156112 CUCUUAUCCUGAGUGGUGGAGGGAcAUGGaCCCAAUGAAACC-CAGCAACCUCUUUUUUu 156170 ..___>>>-->>>>>>,,,,,..,,,<<<<______.._>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUC..CuGCAgaauuaAU..uucUGAAAGAUAAGAg 105 AA+:::AAGGUGC:AA+ C UGCAGA AAU +UCUGAA GAUAAGAG 156171 auAAAAGAAAGGUGCCAAACCguUUGCAGAC-AAAUagGUCUGAACGAUAAGAG 156223 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1019,sp|AP003365.2|AP003365 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 8/9. ----isReversed: 1 ----hitSequence: CACUUAUCUAGAGAGGUGGAGGGACUGGCCCUAUGAAGCCUCGGCAACAUCUCGAAUGUGCCAAUUCCAGUAACCGUAAUGGUUUGAAGAUAAGCA hit 91 : 23502 23407 (rev) 95.11 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 : CUUAUC AGAGAGG:GGAGGGACUGGCCCUAUGAA:CCUC:GCAAC: U U + 317849 CACUUAUCUAGAGAGGUGGAGGGACUGGCCCUAUGAAGCCUCGGCAACA----UCU-CGA 317903 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A :GUGC:AAUUCC+G:A:: UAAU+::U:+AAGAUAAG : 317904 ---A-UGUGCCAAUUCCAGUAACCGUAAUGGUUUGAAGAUAAGCA 317944 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1057,sp|AP004595.1|AP004595 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. ----isReversed: 0 ----hitSequence: GACUUAUCAAGAGAGAUGGAGGGAUUGGCCCGAUGAAGUCUCAGCAACCAGCCUAGAUAAGGUAUGGUGCUAAUUCCAAUAGGCUUACAAGCCUUAAAGAUAAGAA hit 92 : 126926 127031 (fwd) 108.62 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 CUUAUCAAGAGAG::GGAGGGA UGGCCC+AUGAA::CUCAGCAACC:+C U+ A+A+ 126926 GACUUAUCAAGAGAGAUGGAGGGAUUGGCCCGAUGAAGUCUCAGCAACCAGCCUAGAUAA 126985 >>>-->>>>>>,,,,,,,,<<<<______.._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAU..uucUGAAAGAUAAGAg 105 G+:A GGUGCUAAUUCC+ :AG: U+A +:CU:AAAGAUAAG 126986 GGUAUGGUGCUAAUUCCAAUAGGC-UUACaaGCCUUAAAGAUAAGAA 127031 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1058,sp|AP004596.1|AP004596 Oceanobacillus iheyensis HTE831 genomic DNA, section 4/13. ----isReversed: 1 ----hitSequence: UUCUUAUCCAGAGAGGUGGAGGGACUGGCCCAAGGAAGCCUCGGCAACAGACUUAUUUGAUUAAGUACUGUGCCAAUUCCAGUAGCGUAAUUGCUAGAAGAUGAGAA hit 93 : 197999 197893 (rev) 110.38 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCU:AUC+AGAGAGG:GGAGGGACUGGCCC A GAA:CCUC:GCAAC::AC+U+U+ 102052 UUCUUAUCCAGAGAGGUGGAGGGACUGGCCCAAGGAAGCCUCGGCAACAGACUUAUUuga 102111 .___>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 58 .AaugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +A+GU: :GUGC:AAUUCC+G:AG: UAAUU:CU:+AAGAU:AGA: 102112 uUAAGUAC-UGUGCCAAUUCCAGUAGCG-UAAUUGCUAGAAGAUGAGAA 102158 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1059,sp|AP004597.1|AP004597 Oceanobacillus iheyensis HTE831 genomic DNA, section 5/13. ----isReversed: 0 ----hitSequence: UACUUAUCAAGAGAGGUGGAGGGACUGGCCCGCUGAAACCUCAGCAACAGAACGCAUCUGUCUGUGCUAAAUCCUGCAAGCAAUAGCUUGAAAGAUAAGUU hit 94 : 118941 119041 (fwd) 102.67 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 : CUUAUCAAGAGAGGUGGAGGGACUGGCCC+ UGAAACCUCAGCAAC:GA + + U 118941 UACUUAUCAAGAGAGGUGGAGGGACUGGCCCGCUGAAACCUCAGCAACAGAACGCA-UCU 118999 >>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 UC :GUGCUAA+UCCUGCA:: AAU +::UGAAAGAUAAG : 119000 GUC--UGUGCUAAAUCCUGCAAGC--AAUaGCUUGAAAGAUAAGUU 119041 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1062,sp|AP004600.1|AP004600 Oceanobacillus iheyensis HTE831 genomic DNA, section 8/13. ----isReversed: 1 ----hitSequence: CUCUUAUUCAGAGUUGGUGGAGGGACAGACCCGAUGAAGCCCAGCAACCAUCACUACUGGUGAAAAGGUGCUAAUCUGAUGCAAGGAUAAUAGUUCCUUGAACAAUAAGAG hit 95 : 266413 266303 (rev) 90.51 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____._ 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.A 58 CUCUUAU:+AGAG +GG:GGAGGGAC G CCC+AUGAA:CC CAGCAACC+:CA U+ 33538 CUCUUAUUCAGAGuUGGUGGAGGGACAGACCCGAUGAAGCC-CAGCAACCAUCACUACuG 33596 __>>>-->>>>>>,,,,,.,,,<<<<______...._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUC.CuGCAgaauuaAU....uucUGAAAGAUAAGAg 105 UG:+AAGGUGCUAAU UGCA:: UAAU ::UGAA :AUAAGAG 33597 GUGAAAAGGUGCUAAUCUgAUGCAAGGAUAAUaguuCCUUGAACAAUAAGAG 33648 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1062,sp|AP004600.1|AP004600 Oceanobacillus iheyensis HTE831 genomic DNA, section 8/13. ----isReversed: 1 ----hitSequence: AACUUAUCCAGAGUGACGGAGGGAACAGGACCUACGAUGUCACAGCAACCUACCUUUACGGAGUGGUGCUUCUUCCUGCAGAAUUUUUUCUGAAAGAUAAGGU hit 96 : 35266 35164 (rev) 85.61 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 +CUUAUC+AGAG+G::GGAGG A C GG CCUA GA ::C CAGCAACC::C UU +A 264685 AACUUAUCCAGAGUGACGGAGGGAaCAGGACCUACGAUGUCACAGCAACCUACCUU--UA 264742 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 G:: GGUGCU UUCCUGCAGAA U++UUUCUGAAAGAUAAG+ 264743 CGGAGUGGUGCUUCUUCCUGCAGAA-UUUUUUCUGAAAGAUAAGGU 264787 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1063,sp|AP004601.1|AP004601 Oceanobacillus iheyensis HTE831 genomic DNA, section 9/13. ----isReversed: 1 ----hitSequence: CUCUUAUCUAGAGCGGUGGAGGGACUGGCCCUUUGAAACCGCGGCAACCUUCAUAAUUAAAUGAAAGGUGCCAAUUCCUGCAGAAAAUGAAAGAUGAGAG hit 97 : 38307 38208 (rev) 105.50 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.._ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa..A 58 CUCU:AUC AGAG GGUGGAGGGACUGGCCCU UGAAACC C:GCAACC::CAU+++ A 261544 CUCUUAUCUAGAGCGGUGGAGGGACUGGCCCUUUGAAACCGCGGCAACCUUCAUAAUuaA 261603 __>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 AUG::A GGUGC:AAUUCCUGCA AA+ UGAAAGAU:AGAG 261604 AUGAAA-GGUGCCAAUUCCUGCAG----AAA--AUGAAAGAUGAGAG 261643 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1064,sp|AP004602.1|AP004602 Oceanobacillus iheyensis HTE831 genomic DNA, section 10/13. ----isReversed: 1 ----hitSequence: UCCUUAUCAAGAGUCGGGGGAGGAAUCUGGUCCAUUGAUCCCGCAGCAACCAGUUACAAUGAAGUAACAUGGUGCUCAUUCCAGCAAGCGUAGGCUUGAUAGAUGAGAA hit 98 : 158065 157957 (rev) 76.52 bits ((((((((,,,,,.,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____. 1 cUCUUAUCaAGAG.AGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa. 57 ::CU:AUCAAGAG GG:GGAGG:A CUGG:CC UGA :CC CAGCAACC :+ +A 143086 UCCUUAUCAAGAGuCGGGGGAGGAAuCUGGUCCAUUGAUCCCGCAGCAACCAGUUACAAu 143145 ..___>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 A U: A GGUGCU AUUCC+GCA:: ++ +::UGA AGAU:AG:: 143146 gaAGUAACAUGGUGCUCAUUCCAGCAAGC--GUAgGCUUGAUAGAUGAGAA 143194 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1064,sp|AP004602.1|AP004602 Oceanobacillus iheyensis HTE831 genomic DNA, section 10/13. ----isReversed: 1 ----hitSequence: UUCUUAUCAUGAGAGGCGGAGGGAAAUGGCCCAACGAAACCUCGGCAACAGGUUCUUAUUAGAAUACUGUGCCAAUUCCAUCAAGCAAAUUGCUUGAAAGAUAAGAG hit 99 : 9845 9739 (rev) 105.20 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____._ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.A 58 :UCUUAUCA GAGAGG:GGAGGGA UGGCCC A GAA:CCUC:GCAAC: :+ UUA + 291306 UUCUUAUCAUGAGAGGCGGAGGGAaAUGGCCCAACGAAACCUCGGCAACAGGUUCUUAuU 291365 __>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 A : A+:GUGC:AAUUCC+ CA:: AAU +::UGAAAGAUAAGA: 291366 AGAAUACUGUGCCAAUUCCAUCAAGC-AAAUuGCUUGAAAGAUAAGAG 291412 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1065,sp|AP004603.1|AP004603 Oceanobacillus iheyensis HTE831 genomic DNA, section 11/13. ----isReversed: 0 ----hitSequence: CUCUUAUCAAGAGUGGUGGAGGGAAUAGGCCCUGCGAAGCCCGGCAACCUGUAGCAAUUGCUAUUGAAAGGUGCUAAAUCCUACAGACUUCAUCGUCUGGAAGAUAAGAG hit 100 : 162173 162282 (fwd) 107.00 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCUUAUCAAGAG+GG:GGAGGGA GGCCCU GAA:CC C:GCAACC:+ A +A 162173 CUCUUAUCAAGAGUGGUGGAGGGAaUAGGCCCUGCGAAGCC-CGGCAACCUGUAGCAAuu 162231 ..___>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 +AU +:AAGGUGC:AA+UCCU CAGA UU AU +UCUG+AAGAUAAGAG 162232 gcUAUUGAAAGGUGCUAAAUCCUACAGACUUCAUcGUCUGGAAGAUAAGAG 162282 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1065,sp|AP004603.1|AP004603 Oceanobacillus iheyensis HTE831 genomic DNA, section 11/13. ----isReversed: 0 ----hitSequence: UUCUUAUCGAGAGAAGCUAAGGGACCUGGCCUGUUGACGCUUCAGCAACCUCUAUCUCCAUUAGAAAGGUGCUACCUCCAGCAAGAUGUAUGUCUUGAAAGAUAAGAG hit 101 : 200864 200971 (fwd) 95.20 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____._ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.A 58 :UCUUAUC AGAGA:G: A:GGA CUGGCC:+ UGA :C:UCAGCAACC:::AU U A 200864 UUCUUAUCGAGAGAAGCUAAGGGAcCUGGCCUGUUGACGCUUCAGCAACCUCUAUCUCcA 200923 __>>>-->>>>>>,,,,,,,,<<<<______._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaauuaAU.uucUGAAAGAUAAGAg 105 +U:::AAGGUGCUA UCC+GCA::AU++AU U::UGAAAGAUAAGA: 200924 UUAGAAAGGUGCUACCUCCAGCAAGAUGUAUgUCUUGAAAGAUAAGAG 200971 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1065,sp|AP004603.1|AP004603 Oceanobacillus iheyensis HTE831 genomic DNA, section 11/13. ----isReversed: 0 ----hitSequence: UUCUUAUCUAGAGAGAUUGAGGGAUCAGGCCCUAUGACAUCUCGGCAGCGGAUUCUUUAUAUUAAAGAAUACUGUGCCAAUUCCUGCAAAUGCAAACGAGCAUUUGAAAGAUGAGAA hit 102 : 294572 294688 (fwd) 90.42 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 :UCU:AUC AGAGAG:U GAGGGA C GGCCCUAUGA A:CUC:GCA:C :+ UU+ 294572 UUCUUAUCUAGAGAGAUUGAGGGAuCAGGCCCUAUGACAUCUCGGCAGCGGAUUCUUUau 294631 ....___>>>-->>>>>>,,,,,,,,<<<<__.____...._>>>>,,,)))))))) 58 ....AaugucAaGGUGCuAAUUCCuGCAgaau.uaAU....uucUGAAAGAUAAGAg 105 AA : A+ G:GC:AAUUCCUGCA:A AA U:UGAAAGAU:AGA: 294632 auuaAAGAAUACUGUGCCAAUUCCUGCAAAUGcAAACgagcAUUUGAAAGAUGAGAA 294688 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1065,sp|AP004603.1|AP004603 Oceanobacillus iheyensis HTE831 genomic DNA, section 11/13. ----isReversed: 1 ----hitSequence: AUCUUAUCCUGAGAGGUGGAGGGAAAUGGCCCAAAGAAGCCUCGGCAACAGGUUCUAGCUUGAAUACUGUGCCAAAUCCAUCAAGUAUUCUAUGCUUGGUAGAUAAGAG hit 103 : 200738 200630 (rev) 95.48 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____._ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.A 58 UCUUAUC+ GAGAGG:GGAGGGA UGGCCC A GAA:CCUC:GCAAC: :+ U+ + 98913 AUCUUAUCCUGAGAGGUGGAGGGAaAUGGCCCAAAGAAGCCUCGGCAACAGGUUCUAGcU 98972 __>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 59 augucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 + : A+:GUGC:AA+UCC+ CA:: U ++ +::UG+ AGAUAAGA 98973 UGAAUACUGUGCCAAAUCCAUCAAGUAuUCUAuGCUUGGUAGAUAAGAG 99021 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1066,sp|AP004604.1|AP004604 Oceanobacillus iheyensis HTE831 genomic DNA, section 12/13. ----isReversed: 1 ----hitSequence: CUCUUAUUGAGAGUGGCUGAGGGACUGGCCCUGUGACGCCCGGCAACCGUUCAUCGUAAUUCCAGUGAUGAAUAGGUGCUAAAUCCUGCAAAAUACGGACAGUAUUUUGAGAAAUAAGAG hit 104 : 167020 166901 (rev) 97.80 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 CUCUUAU: AGAG+GG: GAGGGACUGGCCCU UGA :CC C:GCAACC :: U 132331 CUCUUAUUGAGAGUGGCUGAGGGACUGGCCCUGUGACGCC-CGGCAACCGUUCAUCGuaa 132389 ........___>>>-->>>>>>,,,,,,,,<<<<__..____...._>>>>,,,)))))) 58 ........AaugucAaGGUGCuAAUUCCuGCAgaau..uaAU....uucUGAAAGAUAAG 103 A+ :: A GGUGC:AA+UCCUGCA:AAU + A UU:UGA+A:AUAAG 132390 uuccagugAUGAAUA-GGUGCUAAAUCCUGCAAAAUacGGACaguaUUUUGAGAAAUAAG 132448 )) 104 Ag 105 AG 132449 AG 132450 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1068,sp|AP004822.1|AP004822 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 1/10. ----isReversed: 0 ----hitSequence: UUCUUAUUGUGAGAAGUUGAGGGACUUGGCCCUGUGAUACUUCAGCAACCGACUUUAUAGCACGGUGCUAAAACCAACGAGUUACUCGAAUGAUAAGUA hit 105 : 15949 16047 (fwd) 80.12 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 : CUUAU: GAGA:GU GAGGGA UGGCCCU UGA AC:UCAGCAACCGAC+UU A+ 15949 UUCUUAUUGUGAGAAGUUGAGGGAcUUGGCCCUGUGAUACUUCAGCAACCGACUUU--AU 16006 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +G CA+GGUGCUAA+ CC+ C::: U+A :::GAA :AUAAG : 16007 AG-CACGGUGCUAAAACCAACGAG--UUA--CUCGAAUGAUAAGUA 16047 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1070,sp|AP004824.1|AP004824 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 3/10. ----isReversed: 0 ----hitSequence: CUCUUAUCGAGAGUGGUGGAGGGAUGUGCCCUACGAAGCCCGGCAACCGUCUUAUAUAGAAAUGGUGCCAAUUCACAUAAAGUUUUAACUUUUGAAGAUGAGAG hit 106 : 261550 261653 (fwd) 103.24 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 CUCU:AUC AGAG+GG:GGAGGGA GCCCUA GAA:CC C:GCAACC::C+U+U A++ 261550 CUCUUAUCGAGAGUGGUGGAGGGAUGUGCCCUACGAAGCC-CGGCAACCGUCUUAU-AUA 261607 >>>-->>>>>>,,,,,,,,<<<<__._____>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau.uaAUuucUGAAAGAUAAGAg 105 G::A GGUGC:AAUUC :A:A U U+A+ U:U:+AAGAU:AGAG 261608 GAAAUGGUGCCAAUUCACAUAAAGUuUUAACUUUUGAAGAUGAGAG 261653 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1074,sp|AP004828.1|AP004828 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 7/10. ----isReversed: 1 ----hitSequence: CUCUUAUCCUGAGUGGUGGAGGGACAUGGACCCAAUGAAACCCAGCAACCUCUUUUUUUAUAAAAGAAAGGUGCCAAACCGUUUGCAGACAAAUAGGUCUGAACGAUAAGAG hit 107 : 56121 56010 (rev) 97.80 bits ((((((((,,,,,,<<<---<<<_.____.>>>------>>>,,<<<-<<<<<<_____. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGG.CCCUAUGAAaCCUCaGCAACCgacaUuUa. 57 CUCUUAUC+ GAG+GGUGGAGGGA UGG CCC AUGAAACC C:GCAACC:::+UUU+ 216730 CUCUUAUCCUGAGUGGUGGAGGGAcAUGGaCCCAAUGAAACC-CAGCAACCUCUUUUUUu 216788 ..___>>>-->>>>>>,,,,,..,,,<<<<______.._>>>>,,,)))))))) 58 ..AaugucAaGGUGCuAAUUC..CuGCAgaauuaAU..uucUGAAAGAUAAGAg 105 AA+:::AAGGUGC:AA+ C UGCAGA AAU +UCUGAA GAUAAGAG 216789 auAAAAGAAAGGUGCCAAACCguUUGCAGAC-AAAUagGUCUGAACGAUAAGAG 216841 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1075,sp|AP004829.1|AP004829 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 8/10. ----isReversed: 1 ----hitSequence: CACUUAUCUAGAGAGGUGGAGGGACUGGCCCUAUGAAGCCUCGGCAACAUCUCGAAUGUGCCAAUUCCAGUAACCGUAAUGGUUUGAAGAUAAGCA hit 108 : 296359 296264 (rev) 95.11 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 : CUUAUC AGAGAGG:GGAGGGACUGGCCCUAUGAA:CCUC:GCAAC: U U + 7692 CACUUAUCUAGAGAGGUGGAGGGACUGGCCCUAUGAAGCCUCGGCAACA----UCU-CGA 7746 >>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 A :GUGC:AAUUCC+G:A:: UAAU+::U:+AAGAUAAG : 7747 ---A-UGUGCCAAUUCCAGUAACCGUAAUGGUUUGAAGAUAAGCA 7787 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1095,sp|AP005037.1|AP005037 Streptomyces avermitilis genomic DNA, complete genome, section 17/30. ----isReversed: 1 ----hitSequence: CGCUCAUCCAGAGGGGCAGAGGGAUACGGCCCGAUGAAGCCCCGGCAACCCUCCAGCCGGUCUUGUCACGUUGAUGUGGCGAGGCUCCCGGCUCGGGAAGGUGCCAAAUCCGUCUCACGGCGAAGUGCGUCGUGAGGAAGAUGAGGA hit 109 : 57876 57730 (rev) 64.31 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 ::CU:AUC+AGAG GG: GAGGGA GGCCC+AUGAA:CC C:GCAACC: C 241550 CGCUCAUCCAGAGGGGCAGAGGGAuACGGCCCGAUGAAGCCCCGGCAACCCUCCAGCCgg 241609 ...............................___>>>-->>>>>>,,,,,,,,<<<<__. 58 ...............................AaugucAaGGUGCuAAUUCCuGCAgaau. 85 + G :AAGGUGC:AA+UCC C :A 241610 ucuugucacguugauguggcgaggcucccggCUCGGGAAGGUGCCAAAUCCGUCUCACGg 241669 ..____....._>>>>,,,)))))))) 86 ..uaAU.....uucUGAAAGAUAAGAg 105 A U +U: G+AAGAU:AG:: 241670 cgAAGUgcgucGUGAGGAAGAUGAGGA 241696 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #39796,sp|U52812.1|BS52812 Bacillus subtilis S-adenosylmethionine synthetase (metE) gene, complete cds, and phosphoenolpyruvate carboxykinase (ppc) and asparagine synthetase (asn) genes, partial cds. ----isReversed: 0 ----hitSequence: CUCUUAUCCCGAGCUGGCGGAGGGACAGGCCCUAUGAAGCCCAGCAACCGGUUUCUCUGUUAUUUAUUAUGUUCAAUUGAGUGAGACAACCAAGGUGCUAACCUGUUGCAAGGUUGUAUGAUUCCUUGAGCGAUAAGAG hit 110 : 691 829 (fwd) 89.17 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCUUAUC+ GAG +GG:GGAGGGAC GGCCCUAUGAA:CC CAGCAACCG::+U U 691 CUCUUAUCCCGAGcUGGCGGAGGGACAGGCCCUAUGAAGCC-CAGCAACCGGUUUCUCug 749 ..........................___>>>-->>>>>>,,,,,.,,,<<<<__.____ 58 ..........................AaugucAaGGUGCuAAUUC.CuGCAgaau.uaAU 89 A +::CAAGGUGCUAA UGCA:: U ++AU 750 uuauuuauuauguucaauugagugagACAACCAAGGUGCUAACCUgUUGCAAGGUuGUAU 809 ...._>>>>,,,)))))))) 90 ....uucUGAAAGAUAAGAg 105 ::UGA+ GAUAAGAG 810 gauuCCUUGAGCGAUAAGAG 829 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #39862,sp|AJ002571.1|BSAJ2571 Bacillus subtilis 168 56 kb DNA fragment between xlyA and ykoR ----isReversed: 1 ----hitSequence: CUCUUAUCGAGAGUUGGGCGAGGGAUUGGCCUUUUGACCCCAACAGCAACCGACCGUAAUACCAUUGUGAAAUGGGGCGCACUGCUUUUCGCGCCGAGACUGAUGUCUCAUAAGGCACGGUGCUAAUUCCAUCAGAUUGUGUCUGAGAGAUGAGAG hit 111 : 38016 37861 (rev) 83.94 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,.,<<<-<<<<<<_____. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCU.CaGCAACCgacaUuUa. 57 CUCU:AUC AGAG +GG: GA:GGA UGGCC:U UGA :CC CAGCAACCG:C U+A 17578 CUCUUAUCGAGAGuUGGGCGAGGGAUUGGCCUUUUGACCCCAaCAGCAACCGACCGUAAu 17637 ..................................................___>>>-->> 58 ..................................................AaugucAaGG 67 +A+G:CA+GG 17638 accauugugaaauggggcgcacugcuuuucgcgccgagacugaugucucaUAAGGCACGG 17697 >>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 68 UGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 UGCUAAUUCC+ CAGA U+ U+UCUGA+AGAU:AGAG 17698 UGCUAAUUCCAUCAGA--UUGUGUCUGAGAGAUGAGAG 17733 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #40073,sp|D83026.1|BSD026 Bacillus subtilis genome sequence covering lic-cel region. ----isReversed: 1 ----hitSequence: ACCUUAUCAAGAGAGGUGGAGGGACUGGCCCUAUGAUACCCGGCAACCGCUGUUUCAAACAGAAUGGUGCUAAAUCCUUAAGAACAUUGCGUUCUUGCAGAUGAGGC hit 112 : 26298 26192 (rev) 103.62 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 :CU:AUCAAGAGAGGUGGAGGGACUGGCCCUAUGA ACC C:GCAACC::: UUU AA 38846 ACCUUAUCAAGAGAGGUGGAGGGACUGGCCCUAUGAUACC-CGGCAACCGCUGUUUCaAA 38904 _>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 :::A GGUGC:AA+UCCU :AGAA U+ UUCU:+ AGAU:AG: 38905 CAGAAUGGUGCUAAAUCCUUAAGAACaUUGCgUUCUUGCAGAUGAGGC 38952 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #40073,sp|D83026.1|BSD026 Bacillus subtilis genome sequence covering lic-cel region. ----isReversed: 1 ----hitSequence: UCCUUAUCAAGAGAGGUGGAGGGACUGGCCCUGCGAUACCCGGCAACCGCUGUUUAACAGAAUGGUGCUAAAUCCUUUAGAGCAAUGAUUGCUCUUGAAGAUAAGGU hit 113 : 24908 24802 (rev) 104.96 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 ::CUUAUCAAGAGAGGUGGAGGGACUGGCCCU GA ACC C:GCAACC::: UUU AA 40236 UCCUUAUCAAGAGAGGUGGAGGGACUGGCCCUGCGAUACC-CGGCAACCGCUGUUU-AAC 40293 >>>-->>>>>>,,,,,,,,<<<<__..____.._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau..uaAU..uucUGAAAGAUAAGAg 105 :::A GGUGC:AA+UCCU :AGA U AU UCU:+AAGAUAAG:: 40294 AGAAUGGUGCUAAAUCCUUUAGAGCaaUGAUugCUCUUGAAGAUAAGGU 40342 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #41459,sp|AJ000974.1|BSPYREYLO Bacillus subtilis pyrE to yloA gene region ----isReversed: 0 ----hitSequence: AACUUAUCAAGAGCGGCUGAGGGACUGGACCUAUGAAGCCCGGCAACCUGCAUAGUUUGUAAGGUGCUACUUCCAGCAAAAUGAAUUCCAUUUUGAAAGAUAAGGG hit 114 : 281 386 (fwd) 104.73 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 +CUUAUCAAGAG GG: GAGG ACUGG CCUAUGAA:CC C:GCAACC::CAU+ ++U 281 AACUUAUCAAGAGCGGCUGAGGGACUGGACCUAUGAAGCC-CGGCAACCUGCAUAG-UUU 338 >>>-->>>>>>,,,,,,,,<<<<______...._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAU....uucUGAAAGAUAAGAg 105 G::A GGUGC:A UUCC+GCA:AAU+AAU UU:UGAAAGAUAAG+ 339 GUAA-GGUGCUACUUCCAGCAAAAUGAAUuccaUUUUGAAAGAUAAGGG 386 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #41460,sp|M59757.2|BSPYROP Bacillus subtilis ORF1A (pyrR), putative membrane-bound uracil permease (pyrP), aspartate transcarbamylase (pyrB), dihydroorotase (pyrC), glutaminase of carbamyl phosphate synthetase (pyrAA), carbamyl phosphate synthetase (pyrAB), dihydroorotase dehydrogenase (pyrD), OMP decarboxylase (pyrF), and OMP-PRPP transferase (pyrE) genes, complete cds; and unknown gene. ----isReversed: 0 ----hitSequence: AACUUAUCAAGAGCGGCUGAGGGACUGGACCUAUGAAGCCCGGCAACCUGCAUAGUUUGUAAGGUGCUACUUCCAGCAAAAUGAAUUCCAUUUUGAAAGAUAAGGG hit 115 : 12498 12603 (fwd) 104.73 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 +CUUAUCAAGAG GG: GAGG ACUGG CCUAUGAA:CC C:GCAACC::CAU+ ++U 12498 AACUUAUCAAGAGCGGCUGAGGGACUGGACCUAUGAAGCC-CGGCAACCUGCAUAG-UUU 12555 >>>-->>>>>>,,,,,,,,<<<<______...._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAU....uucUGAAAGAUAAGAg 105 G::A GGUGC:A UUCC+GCA:AAU+AAU UU:UGAAAGAUAAG+ 12556 GUAA-GGUGCUACUUCCAGCAAAAUGAAUuccaUUUUGAAAGAUAAGGG 12603 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42386,sp|Z99109.2|BSUB0006 Bacillus subtilis complete genome (section 6 of 21): from 1011039 to 1209781. ----isReversed: 1 ----hitSequence: UUCUUAUCAAGAGAAGCAGAGGGACUGGCCCGACGAAGCUUCAGCAACCGGUGUAAUGGCGAUCAGCCAUGACCAAGGUGCUAAAUCCAGCAAGCUCGAACAGCUUGGAAGAUAAGAA hit 116 : 169069 168952 (rev) 116.40 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCUUAUCAAGAGA:G: GAGGGACUGGCCC+A GAA:C:UCAGCAACCG:: U+++ 29675 UUCUUAUCAAGAGAAGCAGAGGGACUGGCCCGACGAAGCUUCAGCAACCGGUGUAAUggc 29734 ........___>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 58 ........AaugucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 A+ ::CAAGGUGCUAA+UCC+GCA:: U +AA +::UG+AAGAUAAGA: 29735 gaucagccAUGACCAAGGUGCUAAAUCCAGCAAGCUcGAACaGCUUGGAAGAUAAGAA 29792 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42387,sp|Z99110.2|BSUB0007 Bacillus subtilis complete genome (section 7 of 21): from 1209742 to 1410982. ----isReversed: 0 ----hitSequence: UUCUUAUCGUGAGAGGUGGAGGGACUGGCCCUUAGAAACCUCAGCAACCGGCUUGUUUUGCAUUUGCAAAGCGCCAAGGUGCUAAAUCCAGCAAGCGUUUUUUAUGCUUGGAAGAUAAGAA hit 117 : 47875 47995 (fwd) 114.57 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCUUAUC GAGAGGUGGAGGGACUGGCCCU GAAACCUCAGCAACCG:C+U U+ 47875 UUCUUAUCGUGAGAGGUGGAGGGACUGGCCCUUAGAAACCUCAGCAACCGGCUUGUUuug 47934 .........___>>>-->>>>>>,,,,,,,,<<<<__.____..._>>>>,,,))))))) 58 .........AaugucAaGGUGCuAAUUCCuGCAgaau.uaAU...uucUGAAAGAUAAGA 104 A G:CAAGGUGCUAA+UCC+GCA:: U++U +::UG+AAGAUAAGA 47935 cauuugcaaAGCGCCAAGGUGCUAAAUCCAGCAAGCGuUUUUuauGCUUGGAAGAUAAGA 47994 ) 105 g 105 : 47995 A 47995 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42387,sp|Z99110.2|BSUB0007 Bacillus subtilis complete genome (section 7 of 21): from 1209742 to 1410982. ----isReversed: 1 ----hitSequence: CUCUUAUCGAGAGUUGGGCGAGGGAUUGGCCUUUUGACCCCAACAGCAACCGACCGUAAUACCAUUGUGAAAUGGGGCGCACUGCUUUUCGCGCCGAGACUGAUGUCUCAUAAGGCACGGUGCUAAUUCCAUCAGAUUGUGUCUGAGAGAUGAGAG hit 118 : 175456 175301 (rev) 83.94 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,.,<<<-<<<<<<_____. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCU.CaGCAACCgacaUuUa. 57 CUCU:AUC AGAG +GG: GA:GGA UGGCC:U UGA :CC CAGCAACCG:C U+A 25786 CUCUUAUCGAGAGuUGGGCGAGGGAUUGGCCUUUUGACCCCAaCAGCAACCGACCGUAAu 25845 ..................................................___>>>-->> 58 ..................................................AaugucAaGG 67 +A+G:CA+GG 25846 accauugugaaauggggcgcacugcuuuucgcgccgagacugaugucucaUAAGGCACGG 25905 >>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 68 UGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 UGCUAAUUCC+ CAGA U+ U+UCUGA+AGAU:AGAG 25906 UGCUAAUUCCAUCAGA--UUGUGUCUGAGAGAUGAGAG 25941 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42388,sp|Z99111.2|BSUB0008 Bacillus subtilis complete genome (section 8 of 21): from 1410943 to 1602922. ----isReversed: 0 ----hitSequence: UUCUUAUCAAGAGCAGGCAGAGGGACGAGCCCGAUGAAGCCCGGCAACCGACUUAUAAAGCACGGUGCUAAUUCUUGCAGCUAGCGGCUGAGAGAUAAGAU hit 119 : 15242 15342 (fwd) 100.44 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_______ 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAa 59 :UCUUAUCAAGAG AGG: GAGGGAC GCCC+AUGAA:CC C:GCAACCGAC+U+U AA 15242 UUCUUAUCAAGAGcAGGCAGAGGGACGAGCCCGAUGAAGCC-CGGCAACCGACUUAU-AA 15299 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 +G CA+GGUGC:AAUUC UGCAG: UA +:CUGA+AGAUAAGA: 15300 AG-CACGGUGCUAAUUCUUGCAGC--UAGCGGCUGAGAGAUAAGAU 15342 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42388,sp|Z99111.2|BSUB0008 Bacillus subtilis complete genome (section 8 of 21): from 1410943 to 1602922. ----isReversed: 1 ----hitSequence: CUCUUAUCGAGAGUUGGGCGAGGGAUUUGGCCUUUUGACCCCAAAAGCAACCGACCGUAAUUCCAUUGUGAAAUGGGGCGCAUUUUUUUCGCGCCGAGACGCUGGUCUCUUAAGGCACGGUGCUAAUUCCAUUCAGAUCUGAUCUGAGAGAUAAGAG hit 120 : 13049 12893 (rev) 70.49 bits ((((((((,,,,,.,<<<---<<<_.____>>>------>>>,.,<<<-<<<<<<_____ 1 cUCUUAUCaAGAG.AGGuGGAGGGA.CUGGCCCUAUGAAaCCU.CaGCAACCgacaUuUa 57 CUCUUAUC AGAG +GG: GA:GGA UGGCC:U UGA :CC AGCAACCG:C U+A 178932 CUCUUAUCGAGAGuUGGGCGAGGGAuUUGGCCUUUUGACCCCAaAAGCAACCGACCGUAA 178991 ..................................................___>>>-->> 58 ..................................................AaugucAaGG 67 +A+G:CA+GG 178992 uuccauugugaaauggggcgcauuuuuuucgcgccgagacgcuggucucuUAAGGCACGG 179051 >>>>,,,,,.,,,<<<<_______>>>>,,,)))))))) 68 UGCuAAUUC.CuGCAgaauuaAUuucUGAAAGAUAAGAg 105 UGCUAAUUC U CAGA U A UCUGA+AGAUAAGAG 179052 UGCUAAUUCcAUUCAGAUCUGA--UCUGAGAGAUAAGAG 179088 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42389,sp|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section 9 of 21): from 1602883 to 1807145. ----isReversed: 0 ----hitSequence: AACUUAUCAAGAGCGGCUGAGGGACUGGACCUAUGAAGCCCGGCAACCUGCAUAGUUUGUAAGGUGCUACUUCCAGCAAAAUGAAUUCCAUUUUGAAAGAUAAGGG hit 121 : 26533 26638 (fwd) 104.73 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 +CUUAUCAAGAG GG: GAGG ACUGG CCUAUGAA:CC C:GCAACC::CAU+ ++U 26533 AACUUAUCAAGAGCGGCUGAGGGACUGGACCUAUGAAGCC-CGGCAACCUGCAUAG-UUU 26590 >>>-->>>>>>,,,,,,,,<<<<______...._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaauuaAU....uucUGAAAGAUAAGAg 105 G::A GGUGC:A UUCC+GCA:AAU+AAU UU:UGAAAGAUAAG+ 26591 GUAA-GGUGCUACUUCCAGCAAAAUGAAUuccaUUUUGAAAGAUAAGGG 26638 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42391,sp|Z99114.2|BSUB0011 Bacillus subtilis complete genome (section 11 of 21): from 2014895 to 2207855. ----isReversed: 1 ----hitSequence: UUUCUAUCCAGAGAGGUGGAGGGACUGGCCCUAUGAAACCUCGGCAACAUUAUUGUGCCAAUUCCAGCAAGCGCUAGCUUGAAAGAUAGGAA hit 122 : 9567 9476 (rev) 94.03 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_.______ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgaca.UuUaAa 59 :U::UAUC+AGAGAGGUGGAGGGACUGGCCCUAUGAAACCUC:GCAAC: +A 183395 UUUCUAUCCAGAGAGGUGGAGGGACUGGCCCUAUGAAACCUCGGCAACA----u----UA 183446 _>>>-->>>>>>,,,,,,,,<<<<_______>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaauuaAUuucUGAAAGAUAAGAg 105 U :GUGC:AAUUCC+GCA:: +A +::UGAAAGAUA::A: 183447 U-----UGUGCCAAUUCCAGCAAGCGCUA-GCUUGAAAGAUAGGAA 183486 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42396,sp|Z99119.2|BSUB0016 Bacillus subtilis complete genome (section 16 of 21): from 3013458 to 3213379. ----isReversed: 1 ----hitSequence: CUCUUAUCCCGAGCUGGCGGAGGGACAGGCCCUAUGAAGCCCAGCAACCGGUUUCUCUGUUAUUUAUUAUGUUCAACUGAGUGAGACAACCAAGGUGCUAACCUGUUGCAAGGUUGUAUGAUUCCUUGAGCGAUAAGAG hit 123 : 114925 114787 (rev) 89.17 bits ((((((((,,,,,.,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAG.AGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 CUCUUAUC+ GAG +GG:GGAGGGAC GGCCCUAUGAA:CC CAGCAACCG::+U U 84998 CUCUUAUCCCGAGcUGGCGGAGGGACAGGCCCUAUGAAGCC-CAGCAACCGGUUUCUCug 85056 ..........................___>>>-->>>>>>,,,,,.,,,<<<<__.____ 58 ..........................AaugucAaGGUGCuAAUUC.CuGCAgaau.uaAU 89 A +::CAAGGUGCUAA UGCA:: U ++AU 85057 uuauuuauuauguucaacugagugagACAACCAAGGUGCUAACCUgUUGCAAGGUuGUAU 85116 ...._>>>>,,,)))))))) 90 ....uucUGAAAGAUAAGAg 105 ::UGA+ GAUAAGAG 85117 gauuCCUUGAGCGAUAAGAG 85136 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42397,sp|Z99120.2|BSUB0017 Bacillus subtilis complete genome (section 17 of 21): from 3213330 to 3414388. ----isReversed: 1 ----hitSequence: CUCUUAUCAAGAGAGGUGGAGGGAAGUGCCCUAUGAAGCCCGGCAACCAUCAACACUGUUGAAAUGGUGCCAAUUCACACGAAGCGUUCAGCUUUGAAAGAUGAGAG hit 124 : 150201 150095 (rev) 97.20 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 CUCU:AUCAAGAGAGG:GGAGGGA GCCCUAUGAA:CC C:GCAACC+:CA + + 50859 CUCUUAUCAAGAGAGGUGGAGGGAAGUGCCCUAUGAAGCC-CGGCAACCAUCAACACuGU 50917 _>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 UG:+A GGUGC:AAUUC C::A U+ + U::GAAAGAU:AGAG 50918 UGAAAUGGUGCCAAUUCACACGAAGCgUUCAgCUUUGAAAGAUGAGAG 50965 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42400,sp|Z99123.2|BSUB0020 Bacillus subtilis complete genome (section 20 of 21): from 3809641 to 4010779. ----isReversed: 0 ----hitSequence: ACCUUAUCAAGAGAGGUGGAGGGACUGGCCCUAUGAUACCCGGCAACCGCUGUUUCAAACAGAAUGGUGCUAAAUCCUUAAGAACAUUGCGUUCUUGCAGAUGAGGC hit 125 : 187154 187260 (fwd) 103.62 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____.__ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.Aa 59 :CU:AUCAAGAGAGGUGGAGGGACUGGCCCUAUGA ACC C:GCAACC::: UUU AA 187154 ACCUUAUCAAGAGAGGUGGAGGGACUGGCCCUAUGAUACC-CGGCAACCGCUGUUUCaAA 187212 _>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 60 ugucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 :::A GGUGC:AA+UCCU :AGAA U+ UUCU:+ AGAU:AG: 187213 CAGAAUGGUGCUAAAUCCUUAAGAACaUUGCgUUCUUGCAGAUGAGGC 187260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42400,sp|Z99123.2|BSUB0020 Bacillus subtilis complete genome (section 20 of 21): from 3809641 to 4010779. ----isReversed: 0 ----hitSequence: UCCUUAUCAAGAGAGGUGGAGGGACUGGCCCUGCGAUACCCGGCAACCGCUGUUUAACAGAAUGGUGCUAAAUCCUUUAGAGCAAUGAUUGCUCUUGAAGAUAAGGU hit 126 : 188544 188650 (fwd) 104.96 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<________ 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUaAau 60 ::CUUAUCAAGAGAGGUGGAGGGACUGGCCCU GA ACC C:GCAACC::: UUU AA 188544 UCCUUAUCAAGAGAGGUGGAGGGACUGGCCCUGCGAUACC-CGGCAACCGCUGUUU-AAC 188601 >>>-->>>>>>,,,,,,,,<<<<__..____.._>>>>,,,)))))))) 61 gucAaGGUGCuAAUUCCuGCAgaau..uaAU..uucUGAAAGAUAAGAg 105 :::A GGUGC:AA+UCCU :AGA U AU UCU:+AAGAUAAG:: 188602 AGAAUGGUGCUAAAUCCUUUAGAGCaaUGAUugCUCUUGAAGAUAAGGU 188650 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42450,sp|Y09476.1|BSY09476 B.subtilis 54kb genomic DNA fragment ----isReversed: 1 ----hitSequence: UUCUUAUCAAGAGAAGCAGAGGGACUGGCCCGACGAAGCUUCAGCAACCGGUGUAAUGGCGAUCAGCCAUGACCAAGGUGCUAAAUCCAGCAAGCUCGAACAGCUUGGAAGAUAAGAA hit 127 : 38002 37885 (rev) 116.40 bits ((((((((,,,,,,<<<---<<<_____>>>------>>>,,<<<-<<<<<<_____... 1 cUCUUAUCaAGAGAGGuGGAGGGACUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa... 57 :UCUUAUCAAGAGA:G: GAGGGACUGGCCC+A GAA:C:UCAGCAACCG:: U+++ 15532 UUCUUAUCAAGAGAAGCAGAGGGACUGGCCCGACGAAGCUUCAGCAACCGGUGUAAUggc 15591 ........___>>>-->>>>>>,,,,,,,,<<<<__.____._>>>>,,,)))))))) 58 ........AaugucAaGGUGCuAAUUCCuGCAgaau.uaAU.uucUGAAAGAUAAGAg 105 A+ ::CAAGGUGCUAA+UCC+GCA:: U +AA +::UG+AAGAUAAGA: 15592 gaucagccAUGACCAAGGUGCUAAAUCCAGCAAGCUcGAACaGCUUGGAAGAUAAGAA 15649 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #26737,sp|U36379.1|SA36379 Staphylococcus aureus S-adenosylmethionine synthetase gene, complete cds. ----isReversed: 0 ----hitSequence: AUCCUGAGUGGUGGAGGGACAUGGACCCAAUGAAACCCAGCAACCUCUUUUUUAUAAAAGAAAGGUGCCAAACCGUUUGCAGACAAAUAGGUCUGAACGAUAAGAG hit 128 : 1 106 (fwd) 66.18 bits ((((((((,,,,,,<<<---<<<_.____.>>>------>>>,,<<<-<<<<<<_____. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGG.CCCUAUGAAaCCUCaGCAACCgacaUuUa. 57 UC:U GAG+GGUGGAGGGA UGG CCC AUGAAACC C:GCAACC:::+UUU+ 1 AUCCU-----GAGUGGUGGAGGGAcAUGGaCCCAAUGAAACC-CAGCAACCUCUUUUUUa 54 .___>>>-->>>>>>,,,,,..,,,<<<<______.._>>>>,,,)))))))) 58 .AaugucAaGGUGCuAAUUC..CuGCAgaauuaAU..uucUGAAAGAUAAGAg 105 AA+:::AAGGUGC:AA+ C UGCAGA AAU +UCUGAA GAUA:GA 55 uAAAAGAAAGGUGCCAAACCguUUGCAGAC-AAAUagGUCUGAACGAUAAGAG 106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #27117,sp|L42943.1|SAPEPCK Staphylococcus aureus (clone KIN50) phosphoenolpyruvate carboxykinase (pckA) gene, complete cds. ----isReversed: 1 ----hitSequence: CUCUUAUCCUGAGUGGUGGAGGGACAUGGACCCAAUGAAACCCAGCAACCUCUUUUUUAUAAAAGAAAGGUGCCAAACCGUUUGCAGACAAAUAGGUCUGAACGAUAAGAG hit 129 : 254 144 (rev) 97.95 bits ((((((((,,,,,,<<<---<<<_.____.>>>------>>>,,<<<-<<<<<<_____. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGG.CCCUAUGAAaCCUCaGCAACCgacaUuUa. 57 CUCUUAUC+ GAG+GGUGGAGGGA UGG CCC AUGAAACC C:GCAACC:::+UUU+ 1783 CUCUUAUCCUGAGUGGUGGAGGGAcAUGGaCCCAAUGAAACC-CAGCAACCUCUUUUUUa 1841 .___>>>-->>>>>>,,,,,..,,,<<<<______.._>>>>,,,)))))))) 58 .AaugucAaGGUGCuAAUUC..CuGCAgaauuaAU..uucUGAAAGAUAAGAg 105 AA+:::AAGGUGC:AA+ C UGCAGA AAU +UCUGAA GAUAAGAG 1842 uAAAAGAAAGGUGCCAAACCguUUGCAGAC-AAAUagGUCUGAACGAUAAGAG 1893 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #28286,sp|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 ----isReversed: 0 ----hitSequence: CGCUCAUCCAGAGGGGCAGAGGGAUACGGCCCGAUGAAGCCCCGGCAACCCUCCAGUCGGUUCUUGUCACACGGACGUGGCGAGGCUCCCGGCUAGGGAAGGUGCCAAAUCCGUCUCACGGCGAGAUGCGUCGUGAGGAAGAUGAGGA hit 130 : 177986 178133 (fwd) 69.12 bits ((((((((,,,,,,<<<---<<<_.____>>>------>>>,,<<<-<<<<<<_____.. 1 cUCUUAUCaAGAGAGGuGGAGGGA.CUGGCCCUAUGAAaCCUCaGCAACCgacaUuUa.. 57 ::CU:AUC+AGAG GG: GAGGGA GGCCC+AUGAA:CC C:GCAACC: C U 177986 CGCUCAUCCAGAGGGGCAGAGGGAuACGGCCCGAUGAAGCCCCGGCAACCCUCCAGUCgg 178045 ................................___>>>-->>>>>>,,,,,,,,<<<<__ 58 ................................AaugucAaGGUGCuAAUUCCuGCAgaau 85 ++G :AAGGUGC:AA+UCC C :A 178046 uucuugucacacggacguggcgaggcucccggCUAGGGAAGGUGCCAAAUCCGUCUCACG 178105 ...____....._>>>>,,,)))))))) 86 ...u