Params: ./cmzasha --no-stderr --filter 75 5 Rfam/cm/RF00151.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_orig/RF00151_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: bicycle.cs.washington.edu pid: 10062 ----cmFile: Rfam/cm/RF00151.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #5757,sp|AB061824.1|AB061824 Homo sapiens RPL17, U58a, U58b genes for ribosomal protein L17, U58a and U58b snoRNA, complete cds and sequence. ----isReversed: 0 ----hitSequence: CUGCGAUGAUGGCAUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUGAGCAGC hit 0 : 2018 2083 (fwd) 5.90 bits <<<<_________.______________________________________________ 1 cugcaGUGAUGAC.UuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUG 59 CUGC UGAUG C UUUCUUAGGACACCUUUGGAUU+A +UGAAAA +A UA UCUG 2018 CUGCGAUGAUGGCaUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUG 2077 _>>>>: 60 AgcagC 65 AGCAGC 2078 AGCAGC 2083 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #5757,sp|AB061824.1|AB061824 Homo sapiens RPL17, U58a, U58b genes for ribosomal protein L17, U58a and U58b snoRNA, complete cds and sequence. ----isReversed: 0 ----hitSequence: CUGCAGUGAUGACUUUCUUGGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGAGCAGC hit 1 : 2400 2464 (fwd) 26.23 bits <<<<________________________________________________________ 1 cugcaGUGAUGACUuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUGA 60 CUGCAGUGAUGACUUUCUU+GGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGA 2400 CUGCAGUGAUGACUUUCUUGGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGA 2459 >>>>: 61 gcagC 65 GCAGC 2460 GCAGC 2464 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #5757,sp|AB061824.1|AB061824 Homo sapiens RPL17, U58a, U58b genes for ribosomal protein L17, U58a and U58b snoRNA, complete cds and sequence. ----isReversed: 0 ----hitSequence: UUGCUGUGAUGACUAUCUUAGGACACCUUUGGAAUAACUAUGAAAGAAAACUAUUCUGAGCAAC hit 2 : 4441 4504 (fwd) 25.36 bits <<<<________________________________________________________ 1 cugcaGUGAUGACUuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUGA 60 :UGC+GUGAUGACU+UCUUAGGACACCUUUGGA+U+AC++UGAAA+ +AA+++AUUCUGA 4441 UUGCUGUGAUGACUAUCUUAGGACACCUUUGGAAUAACUAUGAAAG-AAAACUAUUCUGA 4499 >>>>: 61 gcagC 65 GCA:C 4500 GCAAC 4504 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #89,sp|AC091170.15|AC091170 Homo sapiens chromosome 18, clone RP11-879D5, complete sequence. ----isReversed: 0 ----hitSequence: CUGCGAUGAUGGCAUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUGAGCAGC hit 3 : 127951 128016 (fwd) 5.90 bits <<<<_________.______________________________________________ 1 cugcaGUGAUGAC.UuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUG 59 CUGC UGAUG C UUUCUUAGGACACCUUUGGAUU+A +UGAAAA +A UA UCUG 127951 CUGCGAUGAUGGCaUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUG 128010 _>>>>: 60 AgcagC 65 AGCAGC 128011 AGCAGC 128016 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #89,sp|AC091170.15|AC091170 Homo sapiens chromosome 18, clone RP11-879D5, complete sequence. ----isReversed: 0 ----hitSequence: CUGCAGUGAUGACUUUCUUAGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGAGCAGC hit 4 : 128333 128397 (fwd) 27.09 bits <<<<________________________________________________________ 1 cugcaGUGAUGACUuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUGA 60 CUGCAGUGAUGACUUUCUUAGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGA 128333 CUGCAGUGAUGACUUUCUUAGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGA 128392 >>>>: 61 gcagC 65 GCAGC 128393 GCAGC 128397 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #89,sp|AC091170.15|AC091170 Homo sapiens chromosome 18, clone RP11-879D5, complete sequence. ----isReversed: 0 ----hitSequence: UUGCUGUGAUGACUAUCUUAGGACACCUUUGGAAUAACUAUGAAAGAAAACUAUUCUGAGCAAC hit 5 : 130374 130437 (fwd) 25.36 bits <<<<________________________________________________________ 1 cugcaGUGAUGACUuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUGA 60 :UGC+GUGAUGACU+UCUUAGGACACCUUUGGA+U+AC++UGAAA+ +AA+++AUUCUGA 130374 UUGCUGUGAUGACUAUCUUAGGACACCUUUGGAAUAACUAUGAAAG-AAAACUAUUCUGA 130432 >>>>: 61 gcagC 65 GCA:C 130433 GCAAC 130437 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2436,sp|AC100778.5|AC100778 Homo sapiens chromosome 18, clone RP11-110H1, complete sequence. ----isReversed: 0 ----hitSequence: CUGCGAUGAUGGCAUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUGAGCAGC hit 6 : 8118 8183 (fwd) 5.90 bits <<<<_________.______________________________________________ 1 cugcaGUGAUGAC.UuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUG 59 CUGC UGAUG C UUUCUUAGGACACCUUUGGAUU+A +UGAAAA +A UA UCUG 8118 CUGCGAUGAUGGCaUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUG 8177 _>>>>: 60 AgcagC 65 AGCAGC 8178 AGCAGC 8183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2436,sp|AC100778.5|AC100778 Homo sapiens chromosome 18, clone RP11-110H1, complete sequence. ----isReversed: 0 ----hitSequence: CUGCAGUGAUGACUUUCUUAGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGAGCAGC hit 7 : 8500 8564 (fwd) 27.09 bits <<<<________________________________________________________ 1 cugcaGUGAUGACUuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUGA 60 CUGCAGUGAUGACUUUCUUAGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGA 8500 CUGCAGUGAUGACUUUCUUAGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGA 8559 >>>>: 61 gcagC 65 GCAGC 8560 GCAGC 8564 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2436,sp|AC100778.5|AC100778 Homo sapiens chromosome 18, clone RP11-110H1, complete sequence. ----isReversed: 0 ----hitSequence: UUGCUGUGAUGACUAUCUUAGGACACCUUUGGAAUAACUAUGAAAGAAAACUAUUCUGAGCAAC hit 8 : 10539 10602 (fwd) 25.36 bits <<<<________________________________________________________ 1 cugcaGUGAUGACUuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUGA 60 :UGC+GUGAUGACU+UCUUAGGACACCUUUGGA+U+AC++UGAAA+ +AA+++AUUCUGA 10539 UUGCUGUGAUGACUAUCUUAGGACACCUUUGGAAUAACUAUGAAAG-AAAACUAUUCUGA 10597 >>>>: 61 gcagC 65 GCA:C 10598 GCAAC 10602 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----sequence: #8551,sp|BC000502.1|BC000502 Homo sapiens, ribosomal protein L17, clone MGC:8457 IMAGE:2821464, mRNA, complete cds. ----isReversed: 0 ----hitSequence: CUGCGAUGAUGGCAUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUGAGCAGC hit 9 : 125 190 (fwd) 5.90 bits <<<<_________.______________________________________________ 1 cugcaGUGAUGAC.UuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUG 59 CUGC UGAUG C UUUCUUAGGACACCUUUGGAUU+A +UGAAAA +A UA UCUG 125 CUGCGAUGAUGGCaUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUG 184 _>>>>: 60 AgcagC 65 AGCAGC 185 AGCAGC 190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #7421,sp|X96657.1|HSA18ASN H.sapiens mRNA for U58a small nuclear RNA ----isReversed: 0 ----hitSequence: CUGCAGUGAUGACUUUCUUAGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGAGCAGC hit 10 : 1 65 (fwd) 27.09 bits <<<<________________________________________________________ 1 cugcaGUGAUGACUuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUGA 60 CUGCAGUGAUGACUUUCUUAGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGA 1 CUGCAGUGAUGACUUUCUUAGGACACCUUUGGAUUUACCGUGAAAAUUAAUAAAUUCUGA 60 >>>>: 61 gcagC 65 GCAGC 61 GCAGC 65 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #7422,sp|X96658.1|HSA18BSN Homo sapiens U58b snoRNA gene ----isReversed: 0 ----hitSequence: CUGCGAUGAUGGCAUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUGAGCAGC hit 11 : 1 66 (fwd) 5.90 bits <<<<_________.______________________________________________ 1 cugcaGUGAUGAC.UuUCUUaGGACACCUUUGGAuUuACcgUGAAAauuAAuaaAUUCUG 59 CUGC UGAUG C UUUCUUAGGACACCUUUGGAUU+A +UGAAAA +A UA UCUG 1 CUGCGAUGAUGGCaUUUCUUAGGACACCUUUGGAUUAAUAAUGAAAACAACUACUCUCUG 60 _>>>>: 60 AgcagC 65 AGCAGC 61 AGCAGC 66 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=6.1722e-08, 2d-fracLetsThru=3.52581e-08). Filter report: done 1.65905e+10 nucs (frac lets thru so far=6.1722e-08, 2d-fracLetsThru=3.52581e-08). done 1.65905e+10 nucs (frac lets thru so far=6.1722e-08, 2d-fracLetsThru=3.52581e-08). CPU time: 229492.51u 190.89s 63:48:03.40 Elapsed: 71:17:01