params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5540,AC008043.5,1,sp|AC008043.5|AC008043 Drosophila melanogaster; chromosome 3R; region 94A-94A; BAC clone BACR05A08; complete sequence.,0,0,156537,156597,24.25,GGCGAUGAUGAUGACGAGCCACGACUGUGGCGAUGAUGAUGAUAACGAUGAUGGCUGUGUU,**** NEW HIT #0 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5803,AC009915.5,1,sp|AC009915.5|AC009915 Drosophila melanogaster; chromosome 3R; region 94A-94A; BAC clone BACR09L14; complete sequence.,0,1,49171,49231,24.25,GGCGAUGAUGAUGACGAGCCACGACUGUGGCGAUGAUGAUGAUAACGAUGAUGGCUGUGUU,**** NEW HIT (duplicate of new hit #0) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7754,AE003738.3,1,sp|AE003738.3|AE003738 Drosophila melanogaster chromosome 3R; section 76 of 118 of the complete sequence.,0,2,139351,139411,24.25,GGCGAUGAUGAUGACGAGCCACGACUGUGGCGAUGAUGAUGAUAACGAUGAUGGCUGUGUU,**** NEW HIT (duplicate of new hit #0) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6820,AC125125.4,0,sp|AC125125.4|AC125125 Mus musculus chromosome 8 clone RP24-274E6; complete sequence.,1,3,6997,6941,25.13,AGAGGUGAGGAAGAUGGGGUGACCCUGAGGCAUGAUGUGGAGCUGCAACUCUGAUCU,**** NEW HIT #3 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26413,AL831746.5,1,sp|AL831746.5|AL831746 Mouse DNA sequence from clone RP23-67O11 on chromosome 4,0,4,142200,142256,23.67,CUCAAUUAGGAUCUGUGCGUUCGAUGAGAGGUGAUGAAGGGGCGGGUUCACUGAGGA,**** NEW HIT #4 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/phg.dat.fasta.gz,219,AF217253.1,1,sp|AF217253.1|AF217253 Bacteriophage P22 complete genome.,0,5,29983,30036,25.26,UCAGAUGAUGAGAAUCCUCCCGCUGAAGGUGAUGAUCACGGCCUUCGCUCAAGC,**** NEW HIT #5 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/phg.dat.fasta.gz,576,AF527608.1,1,sp|AF527608.1|AF527608 Bacteriophage P22-pbi; complete sequence.,0,6,6508,6561,25.26,UCAGAUGAUGAGAAUCCUCCCGCUGAAGGUGAUGAUCACGGCCUUCGCUCAAGC,**** NEW HIT (duplicate of new hit #5) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/phg.dat.fasta.gz,763,AY121860.1,1,sp|AY121860.1|AY121860 Enterobacteria phage P22 section B; partial genomic sequence.,0,7,281,334,25.26,UCAGAUGAUGAGAAUCCUCCCGCUGAAGGUGAUGAUCACGGCCUUCGCUCAAGC,**** NEW HIT (duplicate of new hit #5) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/phg.dat.fasta.gz,2048,M59749.1,1,sp|M59749.1|POP22PAC Bacteriophage P22 packaging genes.,0,8,6795,6848,25.26,UCAGAUGAUGAGAAUCCUCCCGCUGAAGGUGAUGAUCACGGCCUUCGCUCAAGC,**** NEW HIT (duplicate of new hit #5) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,17306,AE001092.1,1,sp|AE001092.1|AE001092 Archaeoglobus fulgidus DSM 4304 section 15 of 172 of the complete genome.,1,9,10295,10242,40.02,AGCGAUGAUGAAAGGGCCCCUCUGAACGGUGAUGAGGGUUUUGAGUUCUGAGCU,**** NEW HIT #9 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,17327,AE001113.1,1,sp|AE001113.1|AE001113 Archaeoglobus fulgidus DSM 4304 section 166 of 172 of the complete genome.,1,10,9719,9658,23.93,AUAGGUGAUGAAUCUAGCAGGAUCUGAGCCGUGGCGAUGAUGACGGCUGUACUCUCUGAUUA,**** NEW HIT #10 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21448,AE006700.1,1,sp|AE006700.1|AE006700 Sulfolobus solfataricus section 59 of 272 of the complete genome.,0,11,570,624,29.31,GGAAAUGAUGAGGGUUCCAGAGCUGAAGCGUGAUGAAUGGUUGACACGCUGACCC,**** NEW HIT #11 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21449,AE006701.1,1,sp|AE006701.1|AE006701 Sulfolobus solfataricus section 60 of 272 of the complete genome.,1,12,5711,5656,39.44,GGGAAUGAUGAGCCACGCCAGAACUGAGCCAGGAUGAACGGCUUGGGAGCUGACCC,**** NEW HIT #12 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21574,AE006826.1,1,sp|AE006826.1|AE006826 Sulfolobus solfataricus section 185 of 272 of the complete genome.,1,13,6650,6595,27.14,AUAUAUGAGGAAACCAACCUUAACUGAAGCGUGAUGAAGGGUUGUUUCACUGAUGU,**** NEW HIT #13 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21613,AE006865.1,1,sp|AE006865.1|AE006865 Sulfolobus solfataricus section 224 of 272 of the complete genome.,0,14,2782,2839,27.89,AAAAAUGAGGAAACCACCAGUAAAUGAACUGAUGAUUAAACCUUCAGUGGGCUGAUUU,**** NEW HIT #14 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21632,AE006884.1,1,sp|AE006884.1|AE006884 Sulfolobus solfataricus section 243 of 272 of the complete genome.,1,15,13343,13289,25.46,UUAGUGAAGAGAACUCCCCAAGCUGAGCUGUGACGAGUCCUUUAAGUGCUGAUCU,**** NEW HIT #15 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24470,AE009753.1,1,sp|AE009753.1|AE009753 Pyrobaculum aerophilum strain IM2 section 8 of 201 of the complete genome.,1,16,7505,7450,23.96,AUUUUGAUGAGCCUAUCCCCUCGCUGAGGCGUGACGACGCGUCGCGUUGCUGAAAU,**** NEW HIT #16 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24837,AE010126.1,1,sp|AE010126.1|AE010126 Pyrococcus furiosus DSM 3638; section 1 of 173 of the complete genome.,1,17,10963,10908,46.62,GUCGAUGACGAAACCGGCACUAUCUGAAUGAUGAUGAGCACUCGGUUGUCUGAGAC,AE010126.1/10963-10908,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24852,AE010141.1,1,sp|AE010141.1|AE010141 Pyrococcus furiosus DSM 3638; section 16 of 173 of the complete genome.,0,18,7540,7597,38.78,GGGGAUGAUGAGUUUUUCCCUCACUCUGAUUAGUGAUGAGGAGCCGAUGCACUGACCU,AE010141.1/7540-7597,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24852,AE010141.1,1,sp|AE010141.1|AE010141 Pyrococcus furiosus DSM 3638; section 16 of 173 of the complete genome.,1,19,7409,7353,35.56,UGGGAUGAUGACCUUUUGCUUUACUGAACACAUGAUGACCACGCCCUUCGCUGACCU,**** NEW HIT #17 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24853,AE010142.1,1,sp|AE010142.1|AE010142 Pyrococcus furiosus DSM 3638; section 17 of 173 of the complete genome.,0,20,40,97,27.50,GGCGAUGAGGAGCUGGAUCCGAUCUGAUGUUUAUGAUGAGGGAGGUACAAGCUGAGCC,**** NEW HIT #18 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24861,AE010150.1,1,sp|AE010150.1|AE010150 Pyrococcus furiosus DSM 3638; section 25 of 173 of the complete genome.,1,21,10493,10437,23.52,UGAAUGAUGAGCGCCAUCCGAUACUGAGGGCAUGAUGACCGGAUUCCUGGCUGAUCU,**** NEW HIT #19 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24862,AE010151.1,1,sp|AE010151.1|AE010151 Pyrococcus furiosus DSM 3638; section 26 of 173 of the complete genome.,1,22,9949,9892,24.26,GCCGAUGAGGGAGUCUUUCGGGCCCUGAUUGGUGAUGAGGGCCUCCCUAUCCCGAGGC,**** NEW HIT #20 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24867,AE010156.1,1,sp|AE010156.1|AE010156 Pyrococcus furiosus DSM 3638; section 31 of 173 of the complete genome.,1,23,10096,10040,33.54,AGCAAUGAUGAGCUCUAUCCCUAUCUGACCCAUGAUGACUGUAGCGCGCGCUGAGCU,**** NEW HIT #21 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24880,AE010169.1,1,sp|AE010169.1|AE010169 Pyrococcus furiosus DSM 3638; section 44 of 173 of the complete genome.,0,24,2778,2835,42.31,AGGGAUGAUGAGAUUUGCUACCUCUGAAAAUAAUGAUGAACCCUGCCGUUACUGACCG,AE010169.1/2778-2835,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24882,AE010171.1,1,sp|AE010171.1|AE010171 Pyrococcus furiosus DSM 3638; section 46 of 173 of the complete genome.,1,25,947,891,23.87,GGGGAUGAUGAGUUUGCCGAGUGCUGAGCUAGUGAUGAAUAAACAGUCGCCUGACUU,AE010171.1/947-891,,0,55 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24885,AE010174.1,1,sp|AE010174.1|AE010174 Pyrococcus furiosus DSM 3638; section 49 of 173 of the complete genome.,1,26,5607,5553,25.86,CGCGAUGAAGAAAGCGAACUGCUCUGAGAGAUGAUGAAAAGGGCCUAACAGAGCG,**** NEW HIT #22 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24887,AE010176.1,1,sp|AE010176.1|AE010176 Pyrococcus furiosus DSM 3638; section 51 of 173 of the complete genome.,1,27,4657,4602,45.99,GGCGAUGACGAAGGGUGACGUCCCUGAGUGGUGAUGAAGCCCGCGAUAGCUGAGCA,AE010176.1/4657-4602,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24890,AE010179.1,1,sp|AE010179.1|AE010179 Pyrococcus furiosus DSM 3638; section 54 of 173 of the complete genome.,1,28,2375,2318,45.77,GGCGAUGAUGUAGAUUAGCCCCGACUGAGCGGUGAUGAAGCUGGCCCAUCGCUGAGUC,AE010179.1/2375-2318,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24898,AE010187.1,1,sp|AE010187.1|AE010187 Pyrococcus furiosus DSM 3638; section 62 of 173 of the complete genome.,0,29,7809,7864,34.57,GGCGAUGAUGAUGCCUUCCGCACCUGAUUGGUGAGGAGUGGACGGCUUCCUGAGCC,**** NEW HIT #23 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24909,AE010198.1,1,sp|AE010198.1|AE010198 Pyrococcus furiosus DSM 3638; section 73 of 173 of the complete genome.,1,30,12919,12861,30.94,UUUGAUGAUGAAACAGCCAGGACCCUGAUGAGAUGAUGAAUGGUGGGCUUAGCUGACGU,**** NEW HIT #24 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24917,AE010206.1,1,sp|AE010206.1|AE010206 Pyrococcus furiosus DSM 3638; section 81 of 173 of the complete genome.,1,31,9388,9332,37.68,GCCGAUGAAGAGCGAGCCCGGCCCUGAGGAGAUGAUGAAAGCUACCACUUCUGAGGU,AE010206.1/9388-9332,,0,55 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24927,AE010216.1,1,sp|AE010216.1|AE010216 Pyrococcus furiosus DSM 3638; section 91 of 173 of the complete genome.,1,32,5764,5710,27.28,GCAGAUGAUGAGCUACUCCCGGCUGAAAGAUGAUGAACCACCUACCGGCUGAGGU,**** NEW HIT #25 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24947,AE010236.1,1,sp|AE010236.1|AE010236 Pyrococcus furiosus DSM 3638; section 111 of 173 of the complete genome.,0,33,577,632,23.50,GGCGAUGAUGAAUAGCAAGCCACCUGAAGAGUGAUGAGGUGAACACCCCCUGAGCC,**** NEW HIT #26 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24952,AE010241.1,1,sp|AE010241.1|AE010241 Pyrococcus furiosus DSM 3638; section 116 of 173 of the complete genome.,0,34,3073,3128,32.23,CGGGAUGAGGAAUUCAGCCUAAGCUGAAGUAUGAUGAGGGAGUGACGGACUGACCG,**** NEW HIT #27 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24952,AE010241.1,1,sp|AE010241.1|AE010241 Pyrococcus furiosus DSM 3638; section 116 of 173 of the complete genome.,0,35,3008,3065,29.78,GGCAAUGAUGAGUGAUGGGCGAACUGAAAUAGUGAUGACGGUAGGUGAUCUCUGAGCC,**** NEW HIT #28 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24952,AE010241.1,1,sp|AE010241.1|AE010241 Pyrococcus furiosus DSM 3638; section 116 of 173 of the complete genome.,0,36,4821,4877,28.80,GGCUAUGAGGAAAUCGGUCUUAGCUGAGCUUAUGAUGAAAGUGGUCACCGCCGAGCC,AE010241.1/4821-4877 X59857.1/407-463,,0,57 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24955,AE010244.1,1,sp|AE010244.1|AE010244 Pyrococcus furiosus DSM 3638; section 119 of 173 of the complete genome.,0,37,6908,6965,44.33,UCUGAUGAUGAUCCUUCCCCUCAACUGAGAGGUGAUGAGCACACCGGUAGGCUGAGGU,AF013497.1/173-230 AE010244.1/6908-6965,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24957,AE010246.1,1,sp|AE010246.1|AE010246 Pyrococcus furiosus DSM 3638; section 121 of 173 of the complete genome.,1,38,8198,8144,44.98,UGAGAUGAUGAGAACUCCCUGAUCUGAGCGGUGAUGAGGACCGGUGAUCUGAAAA,AE010246.1/8198-8144,,0,53 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24960,AE010249.1,1,sp|AE010249.1|AE010249 Pyrococcus furiosus DSM 3638; section 124 of 173 of the complete genome.,0,39,3483,3538,34.66,GUAGAUGAUGAGGCCAUCCCCUCUGAUCUGUGAUGAGUGGGUGAGCUGGCUGAUAC,AE010249.1/3483-3538,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24960,AE010249.1,1,sp|AE010249.1|AE010249 Pyrococcus furiosus DSM 3638; section 124 of 173 of the complete genome.,0,40,3395,3450,46.85,AGGGAUGAUGAAGUUCGCUAGACCUGAGGAGUGAUGAGCCCUAGGGUAUCUGACCA,AE010249.1/3395-3450,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24963,AE010252.1,1,sp|AE010252.1|AE010252 Pyrococcus furiosus DSM 3638; section 127 of 173 of the complete genome.,0,41,9059,9115,32.82,UGAGAUGAUGAAUAAACCCGUUGCUGAAAAAUGAUGAGAGGAUCGACUAGCUGACUA,AE010252.1/9059-9115,,0,57 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24970,AE010259.1,1,sp|AE010259.1|AE010259 Pyrococcus furiosus DSM 3638; section 134 of 173 of the complete genome.,0,42,5866,5922,25.55,AGCAAUGAUGAAGCCUCGAUUGGCUGAUUUGAUGAUUGGGAGGGACUUGGCUGAGCG,**** NEW HIT #29 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24976,AE010265.1,1,sp|AE010265.1|AE010265 Pyrococcus furiosus DSM 3638; section 140 of 173 of the complete genome.,1,43,8121,8065,44.48,AAAGAUGAUGAACCCGCGCAGCUCUGAAGGGAUGAUGAGGAUCUUAAGUGCUGAUCU,AE010265.1/8121-8065,,0,55 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24985,AE010274.1,1,sp|AE010274.1|AE010274 Pyrococcus furiosus DSM 3638; section 149 of 173 of the complete genome.,1,44,2256,2201,24.16,AGGGAUGAUGAAGGAGAUUUCGGCAGAGGUGUGAAGAGACUCGCAUGGGCUGACCA,**** NEW HIT #30 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24988,AE010277.1,1,sp|AE010277.1|AE010277 Pyrococcus furiosus DSM 3638; section 152 of 173 of the complete genome.,1,45,2204,2149,46.52,GCGGAUGAUGUGCCUUGCCCAGCCUGAAAGGUGAUGAUGUCGGUAUUAGCUGACGC,AE010277.1/2204-2149,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24995,AE010284.1,1,sp|AE010284.1|AE010284 Pyrococcus furiosus DSM 3638; section 159 of 173 of the complete genome.,1,46,10831,10776,27.23,AUGUAUGAUGAGGAAUCGGGGAGCUGAGAUGUGAUGAAAUCCAUCAGAGCUGACUA,**** NEW HIT #31 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24997,AE010286.1,1,sp|AE010286.1|AE010286 Pyrococcus furiosus DSM 3638; section 161 of 173 of the complete genome.,1,47,11321,11266,26.78,GGUGUGAUGAAAAGGCGGAUUGCUGAGAGGAUGAUGAAGACCUUAGGGGCUGAUCA,**** NEW HIT #32 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24999,AE010288.1,1,sp|AE010288.1|AE010288 Pyrococcus furiosus DSM 3638; section 163 of 173 of the complete genome.,1,48,8137,8082,50.73,UGAGAUGAUGAACUCGGCAGGUCCUGAAGGAUGAUGAGGAUCUUGAGUGCUGAUCA,AE010288.1/8137-8082,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25003,AE010292.1,1,sp|AE010292.1|AE010292 Pyrococcus furiosus DSM 3638; section 167 of 173 of the complete genome.,0,49,12900,12954,25.24,ACCGAUGAGGAGCGUUAGCCACGCUGAAGAUGAUGACAAGAGGGUUAGCCGAGGU,**** NEW HIT #33 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25003,AE010292.1,1,sp|AE010292.1|AE010292 Pyrococcus furiosus DSM 3638; section 167 of 173 of the complete genome.,1,50,12851,12796,37.09,GGGGAUGAUGAGCGUUUACCGGUCUGAGUUGUGAUGAUACUGGCACUGUCUGACCU,**** NEW HIT #34 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25007,AE010296.1,1,sp|AE010296.1|AE010296 Pyrococcus furiosus DSM 3638; section 171 of 173 of the complete genome.,0,51,118,172,28.92,UCCGAUGAUGAGUCUCGCUCGGCUGAUAGAUGAUGUAGGGCAUACUGGCUGAGGU,**** NEW HIT #35 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25007,AE010296.1,1,sp|AE010296.1|AE010296 Pyrococcus furiosus DSM 3638; section 171 of 173 of the complete genome.,0,52,7909,7964,28.89,CCCAAUGAUGAUGGAUCAACCGGCUGAAGUAUGAUGAGGUCCGCAUCACCUGAGGG,**** NEW HIT #36 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25007,AE010296.1,1,sp|AE010296.1|AE010296 Pyrococcus furiosus DSM 3638; section 171 of 173 of the complete genome.,1,53,10251,10196,24.95,CGGGAUGAGGAAGCCGAGGACACCUGAUGGAUGAUGACUCUUCGCUUCGCCGACCG,**** NEW HIT #37 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25022,AE010314.1,1,sp|AE010314.1|AE010314 Methanopyrus kandleri AV19 section 13 of 157 of the complete genome.,0,54,2798,2854,25.16,CACGAUGAUGAGGAUACGGCGAGCGGAGAGGGUGAAGAGGAGACCGCGGGCUGAGCU,**** NEW HIT #38 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25025,AE010317.1,1,sp|AE010317.1|AE010317 Methanopyrus kandleri AV19 section 16 of 157 of the complete genome.,0,55,10604,10660,27.95,GGGGAUGAUGAGGGUGAGGACCGACGGAGGGGUGAAGAGGGUCGCAGGCGCUGAGUU,**** NEW HIT #39 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25030,AE010322.1,1,sp|AE010322.1|AE010322 Methanopyrus kandleri AV19 section 21 of 157 of the complete genome.,0,56,873,930,32.82,UGCGAUGAGGAGGUAUAGCCGCCUCUGACGCGGUGAUGAGGGCACUCGGGGCCGAGCA,**** NEW HIT #40 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25076,AE010368.1,1,sp|AE010368.1|AE010368 Methanopyrus kandleri AV19 section 67 of 157 of the complete genome.,0,57,11919,11975,27.31,CCCGAUGAAGAUCACGGCCUUCGCCUGAGACGUGACGAGAUCCACCCGAGCUGAGGG,**** NEW HIT #41 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25079,AE010371.1,1,sp|AE010371.1|AE010371 Methanopyrus kandleri AV19 section 70 of 157 of the complete genome.,1,58,2568,2513,24.49,ACCGAUGACGAGAAGUCGCGGGUCCGAGUGGUGAGGAACCCAGCUCACGCUGAGGU,**** NEW HIT #42 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25081,AE010373.1,1,sp|AE010373.1|AE010373 Methanopyrus kandleri AV19 section 72 of 157 of the complete genome.,1,59,11277,11220,24.24,AGGGAUGAUGAGUCUGGCCUUCGCCGAGCCGGAUGAGGAAGGCACGAGCUACUGAUCC,**** NEW HIT #43 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25086,AE010378.1,1,sp|AE010378.1|AE010378 Methanopyrus kandleri AV19 section 77 of 157 of the complete genome.,1,60,9676,9622,30.82,GCGGAUGACGAUGUCCCGCGCUACUGAAGGAUGAUGACGAUUGGACCGCGGACGC,**** NEW HIT #44 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25120,AE010412.1,1,sp|AE010412.1|AE010412 Methanopyrus kandleri AV19 section 111 of 157 of the complete genome.,0,61,4893,4948,26.76,GCCGAUGACGAGCCUGCCCCGGCGGGAUCGGUGACGAGGAUUGGCCUUUCCGAGGC,**** NEW HIT #45 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25147,AE010439.1,1,sp|AE010439.1|AE010439 Methanopyrus kandleri AV19 section 138 of 157 of the complete genome.,1,62,9393,9338,26.08,CCCGAUGACGAGCCCACCCCGGACGGACGGAUGACGAAGGGAGCGUUUGCGGAGGG,**** NEW HIT #46 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25378,AE010670.1,1,sp|AE010670.1|AE010670 Methanosarcina acetivorans str. C2A; section 15 of 534 of the complete genome.,1,63,9761,9703,23.66,GGCGAUGAUGAGAGUUACCCCAGCUGAGCAAAAGAUGAUGAGAACAAUUUCCUGAUGCC,**** NEW HIT #47 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,31822,AF013497.1,1,sp|AF013497.1|AF013497 Pyrococcus furiosus endo/exonuclease (fen-1) gene; complete cds.,0,64,173,230,44.33,UCUGAUGAUGAUCCUUCCCCUCAACUGAGAGGUGAUGAGCACACCGGUAGGCUGAGGU,AF013497.1/173-230 AE010244.1/6908-6965,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,551,AF195107.1,1,sp|AF195107.1|AF195107 Sulfolobus acidocaldarius sR13 small nucleolar RNA; complete sequence.,0,65,1,55,23.68,AGGAUGAUGUACUUUCACCCUCACUGAAAGGUGAGGAUGAGUCCGACUACUGACG,**** NEW HIT #48 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8024,AF254824.1,1,sp|AF254824.1|AF254824 Pyrococcus abyssi box C/D small nucleolar RNA sR10.,0,66,1,52,25.98,GAUGAUGAGUUUUUCCCUCACUCUGAGCCGUGAUGAGGAGCCGAUGCUCUGA,AF254824.1/1-52,,0,52 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8026,AF254826.1,1,sp|AF254826.1|AF254826 Pyrococcus abyssi box C/D small nucleolar RNA sR12.,0,67,2,58,32.92,GGCGAUGAUGAGUGAUGGGCGAACUGAGAAGUGAUGAUGGUAGGUGAUCUCUGAGCC,**** NEW HIT #49 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8028,AF254828.1,1,sp|AF254828.1|AF254828 Pyrococcus abyssi box C/D small nucleolar RNA sR14.,0,68,1,51,28.69,GAUGAUGAUUAAACCCGUUGCUGAGAGGUGAUGAGGGGACCGACUAGCUGA,AF254828.1/1-51,,0,51 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8029,AF254829.1,1,sp|AF254829.1|AF254829 Pyrococcus abyssi box C/D small nucleolar RNA sR15.,0,69,1,52,37.97,GAUGAUGAGCCUUCCCCUCACCUGAGUGGUGAUGAGCACACCGGUAGGCUGA,AF254829.1/1-52,,0,52 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8030,AF254830.1,1,sp|AF254830.1|AF254830 Pyrococcus abyssi box C/D small nucleolar RNA sR16.,0,70,1,51,25.35,GAUGAUGAAUCUGGAGCCCCCUGAGUGAUGAUGAGCAGUCUGCGGAGCUGA,**** NEW HIT #50 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8033,AF254833.1,1,sp|AF254833.1|AF254833 Pyrococcus abyssi box C/D small nucleolar RNA sR19.,0,71,1,51,27.93,UAUGAUGAACUUUUGCUUUGCUGAUGUGGUGAUGAGCACGCCCUUCGCUGA,**** NEW HIT #51 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8034,AF254834.1,1,sp|AF254834.1|AF254834 Pyrococcus abyssi box C/D small nucleolar RNA sR2.,0,72,3,61,30.08,UUUGAUGAUGAUACAGCCAGGACCCUGAUGGGAUGAUGAGUGGUGGGCUUAGCUGAUGU,**** NEW HIT #52 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8035,AF254835.1,1,sp|AF254835.1|AF254835 Pyrococcus abyssi box C/D small nucleolar RNA sR20.,0,73,2,57,33.46,GUUGAUGAUGAACUCGCUUGUUGCUGAAGGGUGAUGAAGGGCAUACUGGCUGAUUU,**** NEW HIT #53 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8036,AF254836.1,1,sp|AF254836.1|AF254836 Pyrococcus abyssi box C/D small nucleolar RNA sR3.,0,74,1,50,33.74,AAUGAUGAGACCGGCACUAACUGAGUUGUGAUGAGCACUCGGUUGGCUGA,AF254836.1/1-50,,0,50 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8039,AF254839.1,1,sp|AF254839.1|AF254839 Pyrococcus abyssi box C/D small nucleolar RNA sR6.,0,75,3,58,47.46,AGGAAUGAUGAGAUUUGCUACCACUGAGCAGUGAUGAGCCCUGCCGUUACUGACCU,AJ248288.1/36389-36444 AF254839.1/3-58,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,38997,AF468960.1,1,sp|AF468960.1|AF468960 Pyrococcus furiosus sR9 RNA; complete sequence.,0,76,61,117,35.56,UGGGAUGAUGACCUUUUGCUUUACUGAACACAUGAUGACCACGCCCUUCGCUGACCU,**** NEW HIT (duplicate of new hit #17) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,49952,AJ430237.1,1,sp|AJ430237.1|AFU430237 Archaeoglobus fulgidus u-64 snoRNA gene; clone Afu-64,0,77,1,54,40.02,AGCGAUGAUGAAAGGGCCCCUCUGAACGGUGAUGAGGGUUUUGAGUUCUGAGCU,**** NEW HIT (duplicate of new hit #9) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,888,AP000001.1,1,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA; 1-287000 nt. position (1/7).,0,78,55211,55266,26.61,CGGGAUGAGGAAGCCGAGGACACCUGAAGGAUGAUGACUCUUCGCUUCGCCGACCG,AP000001.1/55211-55266,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,888,AP000001.1,1,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA; 1-287000 nt. position (1/7).,0,79,115144,115199,41.32,GCCGAUGAUGAGACCGGUACUGGCCGAAGUAUGAUGAGCACUCGGUUAGCUGAGGC,AP000001.1/115144-115199,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,888,AP000001.1,1,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA; 1-287000 nt. position (1/7).,0,80,215884,215941,41.79,AGGGAUGAUGAGUUUUUCCCUCACUCUGAGGAGUGAUGAGGAGCCGAUGCACUGACCU,AP000001.1/215884-215941,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,888,AP000001.1,1,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA; 1-287000 nt. position (1/7).,0,81,230056,230110,27.95,UGGGUGAUGAGAUGGCGGAUUGCUGAGAGAUGAUGAGGACCUUAGGGGCUGAUUA,AP000001.1/230056-230110,,0,55 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,888,AP000001.1,1,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA; 1-287000 nt. position (1/7).,0,82,243126,243181,45.36,AAAGAUGAUGAACUCGGCAGGUCCUGAUUCGUGAUGAGGAUCUUGAGUGCUGAUUU,AP000001.1/243126-243181,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,888,AP000001.1,1,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA; 1-287000 nt. position (1/7).,0,83,262665,262721,31.24,UAAGAUGAUGAAUCUGGAGCCCCCUGAUCGGUGAUGAUCAGUCUGCGGAGCUGAUAA,**** NEW HIT #56 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,888,AP000001.1,1,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA; 1-287000 nt. position (1/7).,1,84,266350,266295,33.23,ACCGAUGAAGAGCCUUUUGGGCCCUGAGAGAUGAUGAAAGCCCCCCUAUCUGAGGG,**** NEW HIT #57 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,888,AP000001.1,1,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA; 1-287000 nt. position (1/7).,1,85,236067,236011,26.87,UGAGAUGAAGAAAAAGCACCUCCACUGAGUGAUGAUGACACGCCCACGGUCUGAUCA,**** NEW HIT #58 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,888,AP000001.1,1,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA; 1-287000 nt. position (1/7).,1,86,215775,215719,37.11,GGGGAUGAAGAGCUUUUGCUUUGCUGAGCAGAUGAUGACCACGCCCUUCGCUGACCU,**** NEW HIT #59 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,889,AP000002.1,1,sp|AP000002.1|AP000002 Pyrococcus horikoshii OT3 genomic DNA; 287001-544000 nt. position (2/7).,1,87,248539,248483,38.31,GGCGAUGAUGAGCUCCAUCCCUACCUGAGUUGUGAUGAAUGUAGCGCGCUCUGAGCA,**** NEW HIT #60 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,889,AP000002.1,1,sp|AP000002.1|AP000002 Pyrococcus horikoshii OT3 genomic DNA; 287001-544000 nt. position (2/7).,1,88,133719,133664,47.24,UGGGAUGAUGAAGUUUGCUACCCCUGAAGAAUGAUGAACCCUGCCGUUACUGACCA,AP000002.1/133719-133664,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,890,AP000003.1,1,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA; 544001-777000 nt. position (3/7).,0,89,86833,86886,25.33,GCGGAUGAUGAAGGCUAAUUUCGGAUUGGUGAAGAGCCCUAUGAGCGCUGACGC,**** NEW HIT #61 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,890,AP000003.1,1,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA; 544001-777000 nt. position (3/7).,0,90,127975,128030,38.35,GGCGAUGAUGUAGGGUGGCGUCCCUGACAUAUGAUGAAGCCUGCGAUGGCUGAGCA,AP000003.1/127975-128030,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,890,AP000003.1,1,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA; 544001-777000 nt. position (3/7).,0,91,145901,145954,29.11,UGCGAUGAUGAGAGCGAACUGCACUGAAAAGUGAUGACAGGGCCUUGCUGAGCG,AP000003.1/145901-145954,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,890,AP000003.1,1,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA; 544001-777000 nt. position (3/7).,0,92,218168,218223,37.31,GGCGAUGAUGAAGCCUUCCGCACCUGAAUGAUGAGGAGUGGACGGCUUCCUGAGCC,**** NEW HIT #62 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,890,AP000003.1,1,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA; 544001-777000 nt. position (3/7).,1,93,644,588,24.35,CGGGAUGAUGACUUUGCCGAGUGCUGAGCUGGUGAUGAGUAAACAGUCGUCUGACUU,**** NEW HIT #63 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,891,AP000004.1,1,sp|AP000004.1|AP000004 Pyrococcus horikoshii OT3 genomic DNA; 777001-994000 nt. position (4/7).,0,94,125264,125321,28.66,AAAAAUGAUGAGUACGGGGCCACCUGAGCGGUGAUGAGGUUUCUCCCAAGUCUGAUUA,AP000004.1/125264-125321,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,891,AP000004.1,1,sp|AP000004.1|AP000004 Pyrococcus horikoshii OT3 genomic DNA; 777001-994000 nt. position (4/7).,1,95,29817,29760,42.93,AGCGAUGAUGUAGAUUAGCCCCGACUGAGCGGUGAUGAGGCUGGCCCAUCGCUGAGUC,AP000004.1/29817-29760,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,892,AP000005.1,1,sp|AP000005.1|AP000005 Pyrococcus horikoshii OT3 genomic DNA; 994001-1166000 nt. position (5/7).,0,96,19073,19127,27.67,ACUAAUGAUGAACUACUCCCGGCUGAGGGGUGAUGAACCACCUACCGGCUGAGGU,**** NEW HIT #64 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,892,AP000005.1,1,sp|AP000005.1|AP000005 Pyrococcus horikoshii OT3 genomic DNA; 994001-1166000 nt. position (5/7).,0,97,137166,137224,30.74,UUUAAUGAUGAAACAGCCAGGACCCUGAUGGGAUGAUGAGUGGUGGGCUUAGCUGAUGU,**** NEW HIT #65 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,892,AP000005.1,1,sp|AP000005.1|AP000005 Pyrococcus horikoshii OT3 genomic DNA; 994001-1166000 nt. position (5/7).,1,98,169749,169694,41.66,UGGGAUGAUGAAGUUCGCUAGAACUGAGAGGUGAUGACGCCCAGGGUAUCUGACUU,AP000005.1/169749-169694,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,892,AP000005.1,1,sp|AP000005.1|AP000005 Pyrococcus horikoshii OT3 genomic DNA; 994001-1166000 nt. position (5/7).,1,99,123042,122987,42.16,GCCGAUGAGGAACGAGCCCGGCCCUGAAGGAUGAUGAAAGCUACCACUACUGAGGU,AP000005.1/123042-122987,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,893,AP000006.1,1,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA; 1166001-1485000 nt. position (6/7).,0,100,46025,46081,40.47,AGAGAUGAUGAGUAAACCCGUUGCUGAGCGGUGAUGAGAGGAUCGACUAGCUGAACA,AP000006.1/46025-46081,,0,57 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,893,AP000006.1,1,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA; 1166001-1485000 nt. position (6/7).,0,101,108610,108667,45.46,UCUGAUGAUGAACCUUCCCCUCACCUGAAAGGUGAUGAGCACACCGGUAGGCUGAGGG,AP000006.1/108610-108667,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,893,AP000006.1,1,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA; 1166001-1485000 nt. position (6/7).,0,102,235921,235977,28.75,GGCGAUGAUGAGGCCUCGAUUGGCUGAAUCGAUGAUUGAGAGGGACUUGGCUGAGCG,**** NEW HIT #66 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,893,AP000006.1,1,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA; 1166001-1485000 nt. position (6/7).,0,103,312510,312565,26.36,UGGGAUGAUGAGGGAGAUUUCGGCCGAGUGGUGAGGAGACUCGCAUGGGCUGACCU,**** NEW HIT #67 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,893,AP000006.1,1,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA; 1166001-1485000 nt. position (6/7).,1,104,318845,318790,30.53,AGGAAUGAUGACCGGUUUCGGGACUGAACGAUGAUGACACCAGCUAUCGCUGACCU,**** NEW HIT #68 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,893,AP000006.1,1,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA; 1166001-1485000 nt. position (6/7).,1,105,162880,162825,32.15,CGGGAUGAGGAGUUCAGCCUAAGCUGAGACAUGAUGAGGGAGUGACGGACUGACCG,**** NEW HIT #69 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,893,AP000006.1,1,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA; 1166001-1485000 nt. position (6/7).,1,106,162943,162886,31.36,GGCGAUGAUGAGUGAUGGGCGAACUGAAAACAUGAUGAAGGUAGGUGAUCUCUGAGCU,**** NEW HIT #70 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,893,AP000006.1,1,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA; 1166001-1485000 nt. position (6/7).,1,107,161988,161933,41.35,GGCGAUGAGGAGAUCGGUCUUGUCUGAAGAAUGAUGAAAGUGGUCACCGCUGAGCC,AP000006.1/161988-161933,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,893,AP000006.1,1,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA; 1166001-1485000 nt. position (6/7).,1,108,124720,124662,39.01,UUCAAUGAUGAAAACUCCCUGAUCUGAAAAAUAAAUGAUGAAGACCGGUUCACUGAGAU,AP000006.1/124720-124662,,0,57 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,894,AP000007.1,1,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA; 1485001-1738505 nt. position (7/7).,0,109,35050,35105,40.40,CAGAGUGAUGAGCCCGCGCAGCGCUGAUAGAUGAUGAAGAUUUUAAGUGCUGACUU,AP000007.1/35050-35105,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,894,AP000007.1,1,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA; 1485001-1738505 nt. position (7/7).,0,110,247054,247109,31.64,UUGGAUGAUGAGCGUUUACCGGUCUGAGCUGUGAUGAUAUCGGCACUGUCUGACUA,**** NEW HIT #71 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,894,AP000007.1,1,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA; 1485001-1738505 nt. position (7/7).,1,111,247053,246999,24.75,GCCGAUGAGGAUCGUUAGCCACGCUGAGGAUGAUGAUAAGAGGGUUAGCCGAGGC,**** NEW HIT #72 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,894,AP000007.1,1,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA; 1485001-1738505 nt. position (7/7).,1,112,138025,137970,24.50,GACGUGAUGAGGAAUCGGGGAGCUGAAGCUAUGAUGAGAUCCGCCAACGCUGAUUU,**** NEW HIT #73 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,894,AP000007.1,1,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA; 1485001-1738505 nt. position (7/7).,1,113,46374,46319,48.16,GCGGAUGAUGAUCCUUGCCCAGCCUGAGGAGUGAUGAAGUCGGUAUUAGCUGACGC,AP000007.1/46374-46319,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,898,AP000061.1,1,sp|AP000061.1|AP000061 Aeropyrum pernix genomic DNA; section 4/7.,1,114,6194,6139,29.23,UGGGAUGAUGACGCCGUCCCAGCAUGAAGGGUGAUGACCUCACGACGAUCUGACCA,**** NEW HIT #74 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,906,AP000982.1,1,sp|AP000982.1|AP000982 Sulfolobus tokodaii genomic DNA; complete sequence; section:2/10.,0,115,8765,8820,23.55,GGGGAUGACGAGGGGUGGCGAUCUGAAAGCUUGAUGAAUGGCUUGGAAGCUGACCU,**** NEW HIT #75 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,908,AP000984.1,1,sp|AP000984.1|AP000984 Sulfolobus tokodaii genomic DNA; complete sequence; section:4/10.,1,116,159488,159433,30.86,AGUGAUGAUGAGCACCCAACCUCCUGAAUGGUGAGGAAGGCUAGAUUAACUGAUUA,**** NEW HIT #76 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,909,AP000985.1,1,sp|AP000985.1|AP000985 Sulfolobus tokodaii genomic DNA; complete sequence; section:5/10.,1,117,244166,244111,25.34,GGGGAUGACGAGGGGUGGCUAUCUGAAAGCUUGAUGAAUGGCUUGGAAGCUGACCC,**** NEW HIT #77 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,912,AP000988.1,1,sp|AP000988.1|AP000988 Sulfolobus tokodaii genomic DNA; complete sequence; section:8/10.,1,118,129388,129334,30.51,GGGAAUGAUGAGACCAGGCUCUCUGAAGCUUGAUGAAUGGGUUCACAUCUGACCC,**** NEW HIT #78 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,913,AP000989.1,1,sp|AP000989.1|AP000989 Sulfolobus tokodaii genomic DNA; complete sequence; section:9/10.,0,119,114832,114887,27.95,ACAAAUGAUGAUGCCGACAUAGACUGAAGAAUGAGGAGGGGUCGAUUUACUGAUGG,**** NEW HIT #79 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,913,AP000989.1,1,sp|AP000989.1|AP000989 Sulfolobus tokodaii genomic DNA; complete sequence; section:9/10.,1,120,83575,83521,28.90,GAAAAUGAUGAAAGAACCCCUCACUGAAUAUGAUGAACUUGGCCGACGCUGACUC,**** NEW HIT #80 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,913,AP000989.1,1,sp|AP000989.1|AP000989 Sulfolobus tokodaii genomic DNA; complete sequence; section:9/10.,1,121,29034,28979,28.78,AAUGAGGAUGAGAACUCCCCAGACUGAAGUGUGAGGAGUCCUUUAAGUGCUGAUAU,**** NEW HIT #81 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45057,AJ248283.1,1,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6,0,122,64245,64300,26.61,CGGGAUGAGGAAGCCGAGGACACCUGAAUUGUGAUGAAUCUUCGCUUCGCCGACCG,**** NEW HIT #82 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45057,AJ248283.1,1,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6,0,123,127068,127123,46.57,GCCAAUGAUGAGACCGGCACUAACUGAGUUGUGAUGAGCACUCGGUUGGCUGAGAC,AJ248283.1/127068-127123,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45057,AJ248283.1,1,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6,0,124,230633,230690,40.97,AGGGAUGAUGAGUUUUUCCCUCACUCUGAGCCGUGAUGAGGAGCCGAUGCUCUGACCU,AJ248283.1/230633-230690,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45057,AJ248283.1,1,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6,0,125,245976,246031,28.89,UUGAAUGAUGAGAUGGCGGAUUGCUGAGCUGUGAUGAAGACCUUAGGGUCUGACUU,**** NEW HIT #83 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45057,AJ248283.1,1,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6,0,126,258067,258122,49.37,GAAGAUGAUGAGCUCGGCAGGUCCUGAGGAGUGAUGAGGAUCUUGAGUGCUGAUUC,AJ248283.1/258067-258122,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45057,AJ248283.1,1,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6,1,127,230516,230461,35.59,GUUAUGAUGAACUUUUGCUUUGCUGAUGUGGUGAUGAGCACGCCCUUCGCUGAUAC,**** NEW HIT #84 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45057,AJ248283.1,1,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6,1,128,73088,73033,33.46,GUUGAUGAUGAACUCGCUUGUUGCUGAAGGGUGAUGAAGGGCAUACUGGCUGAUUU,**** NEW HIT (duplicate of new hit #53) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45057,AJ248283.1,1,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6,1,129,65278,65223,31.85,UCCGAUGAUGAUGGAUCAACCGGCUGAGUGGUGAUGAAGUCCGCAUCACCUGAGGC,AJ248283.1/65278-65223,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45058,AJ248284.1,1,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6,0,130,156561,156616,23.62,UUGGAUGAUGACCGGUUUCGGGACUGAGCUAUGAUGACACCAGCUAUCGCUGACUC,**** NEW HIT #86 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45058,AJ248284.1,1,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6,1,131,236815,236760,33.98,GGCGAUGAAGAAAAUUUCGCUAGCUGAAAAGUGAUGAGUACCCUCGCAACUGAGCC,**** NEW HIT #87 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45058,AJ248284.1,1,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6,1,132,166136,166081,25.35,UGGGAUGAUGAAGGAGAUUUCGGCCGAAAGGUGAGGAAACUCGCAUGGGCUGACCU,**** NEW HIT #88 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45058,AJ248284.1,1,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6,1,133,94572,94515,38.76,UCGAGUGAUGAGCCCGCGCAGCGCUGAGCAAGAUGAUGAAGAUUUUAAGUGCUGACGC,AJ248284.1/94572-94515,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45058,AJ248284.1,1,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6,1,134,11081,11026,46.73,GCGGAUGACGAGCCUUGCCCAGCCUGAAAGGUGAUGAUGUCGGUAUUAGCUGACGC,AJ248284.1/11081-11026,,0,54 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45059,AJ248285.1,1,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6,0,135,31285,31340,32.74,CGGGAUGAGGAGUUCAGCCUAGGCUGAGGCGUGAUGAGGGAGUGACGGACUGACCG,**** NEW HIT #89 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45059,AJ248285.1,1,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6,0,136,31219,31275,32.92,GGCGAUGAUGAGUGAUGGGCGAACUGAGAAGUGAUGAUGGUAGGUGAUCUCUGAGCC,**** NEW HIT (duplicate of new hit #49) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45059,AJ248285.1,1,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6,0,137,36404,36459,35.87,GGCAAUGAUGAAAUCGGUCUUGUCCGAGGAGUGAUGAUAGUGGUCACCGCUGAGCC,AJ248285.1/36404-36459,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45059,AJ248285.1,1,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6,0,138,75109,75163,51.53,UGCGAUGAUGAUAACUCCCUGACCUGAAAGGUGAUGAGGACCGGUUCACUGAGCU,AJ248285.1/75109-75163,,0,55 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45059,AJ248285.1,1,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6,1,139,162300,162244,40.55,AGUGAUGAUGAUUAAACCCGUUGCUGAGAGGUGAUGAGGGGACCGACUAGCUGAACA,AJ248285.1/162300-162244,,0,55 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45059,AJ248285.1,1,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6,1,140,93577,93520,44.74,AUAGAUGAUGAGCCUUCCCCUCACCUGAGUGGUGAUGAGCACACCGGUAGGCUGAGGG,AJ248285.1/93577-93520,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45060,AJ248286.2,1,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6,0,141,52940,52995,42.34,UCCGAUGAGGAGCGAGCCCGGCCCUGAGCGAUGAUGAGAGCUACCACUACUGAGGU,AJ248286.2/52940-52995,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45060,AJ248286.2,1,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6,0,142,187575,187633,30.08,UUUGAUGAUGAUACAGCCAGGACCCUGAUGGGAUGAUGAGUGGUGGGCUUAGCUGAUGU,**** NEW HIT (duplicate of new hit #52) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45060,AJ248286.2,1,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6,1,143,162377,162323,26.45,AGCGAUGAUGAACUACUCCCGGCUGAGCUGUGAUGAACCACCUACCGGCUGAGGU,**** NEW HIT #92 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45060,AJ248286.2,1,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6,1,144,47940,47881,33.83,GGGAGUGAUGAGGUUCGCUAGAGCUGAAGGAUUGAUGAUGAGACCCAGGGUAUCUGACCG,AJ248286.2/47940-47881,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45060,AJ248286.2,1,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6,1,145,41891,41834,29.38,UAAAAUGAUGAGUACGGGGCCACCUGAAUGGUGAUGAGGUUUCUCCCAAGGCUGAUUA,**** NEW HIT #93 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45061,AJ248287.2,1,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6,0,146,1331,1388,45.28,AGCGAUGAUGUAGAUUAGCCCCGACUGAGUUGUGAUGAGGCUGGCCCAUCGCUGAGCU,AJ248287.2/1331-1388,,0,58 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45061,AJ248287.2,1,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6,0,147,86077,86132,33.14,AGGGAUGAUGAGGCCUACCUCGCUGAGCUGUGAUGAGUGGGUGAGCUGGCUGACAU,AJ248287.2/86077-86132,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45061,AJ248287.2,1,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6,0,148,209213,209269,35.13,GGCGAUGAUGAGCUCCAUCCCUAUCUGAGUUGUGAUGACUGUAGCGCGCUCUGAGCU,**** NEW HIT #94 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45061,AJ248287.2,1,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6,1,149,274259,274204,27.34,CUCGAGGAUGAUCCCACCCUUGGCUGAAGUGUGAUGAUGUCUCGUGGUUCUGAGAG,**** NEW HIT #95 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45061,AJ248287.2,1,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6,1,150,97964,97911,31.00,GCGGAUGAUGAGCUAGUAAUUCUGAGCGAUGAAGAGCCCUAUGAGCGCUGACGC,**** NEW HIT #96 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45061,AJ248287.2,1,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6,1,151,65743,65681,29.35,GGCGAUGAGGAAGGGUGGCGUCCCUGAGCUCUGUGCCGUGAUGAUGCCUGCGAUGGCUGAGCA,AJ248287.2/65743-65681,,0,61 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45061,AJ248287.2,1,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6,1,152,46690,46637,32.11,UGCGAUGAUGAAAGCGAACUGCACUGAAAAGUGAUGAGAGGGCCUCGCUGAGCG,**** NEW HIT #97 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45061,AJ248287.2,1,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6,1,153,14879,14824,37.13,GGCAAUGAUGAAGCCUUCCGCACCUGAACGGUGAGGAGUGGACGGCUUCCUGAGCC,**** NEW HIT #98 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45062,AJ248288.1,1,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6,0,154,36389,36444,47.46,AGGAAUGAUGAGAUUUGCUACCACUGAGCAGUGAUGAGCCCUGCCGUUACUGACCU,AJ248288.1/36389-36444 AF254839.1/3-58,,0,56 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45062,AJ248288.1,1,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6,0,155,153183,153241,26.93,UGGGAUGAUGAAACUCCUUUCGGGCACUGAUCCGUGAUGAAGGCCCUCCUAUCUGAGCA,**** NEW HIT #99 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45062,AJ248288.1,1,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6,0,156,160715,160770,24.30,AUAGAUGAUGAGCGCCAUCGAUGCUGAGGAGUGAUGACCGGAUUCCUGGCUGAUCU,**** NEW HIT #100 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45062,AJ248288.1,1,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6,0,157,255930,255985,32.96,UGGGAUGAUGAGCGUUUACCGGUCUGAGCUGUGAUGACAUCGGCACUGUCUGACUA,**** NEW HIT #101 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,45062,AJ248288.1,1,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6,1,158,156858,156802,36.55,AAAGAUGAUGAAUCUGGAGCCCCCUGAGUGAUGAUGAGCAGUCUGCGGAGCUGAUAU,**** NEW HIT #102 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,47414,D88253.1,1,sp|D88253.1|D88253 Thermococcus litoralis DNA for 4-alpha-glucanotransferase; complete cds.,1,159,2347,2289,27.58,ACCGAUGAUGAAGAACCUUUCGGGCCCUGAUGGAUGAUGGAGGCCUCCCUAUCUGAGGU,**** NEW HIT #103 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13453,U67460.1,1,sp|U67460.1|MJU67460 Methanococcus jannaschii section 2 of 150 of the complete genome.,1,160,12568,12513,24.60,GCGGAUGAUGAACGGAGUAGCUGCUGAGCUAUGAUGAUUGAUGGGCGAACUGACGC,**** NEW HIT #104 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13454,U67461.1,1,sp|U67461.1|MJU67461 Methanococcus jannaschii section 3 of 150 of the complete genome.,1,161,7053,6997,30.78,GCAGAUGAUGACGUUUAUCCCCGUCUGAGUUAUGAUGAGUAGCAAGCCGGCUGAUGC,**** NEW HIT #105 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13455,U67462.1,1,sp|U67462.1|MJU67462 Methanococcus jannaschii section 4 of 150 of the complete genome.,1,162,1952,1896,31.21,GGCGAUGAUGACAAUUUCGCUAUCUGAUUCUGUGAUGACUACUCCCGCAGCUGAGCC,**** NEW HIT #106 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13475,U67482.1,1,sp|U67482.1|MJU67482 Methanococcus jannaschii section 24 of 150 of the complete genome.,0,163,8617,8673,34.85,GCCAAUGAUGACGAUUGGCUUUGCUGAGUCUGUGAUGAACCGUAUGAGCACUGAGGC,**** NEW HIT #107 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13495,U67502.1,1,sp|U67502.1|MJU67502 Methanococcus jannaschii section 44 of 150 of the complete genome.,1,164,5584,5529,29.96,GGCAAUGAUGAAAAGAGGGUUAGCUGAACUGUGAUGAUACUUACCCGAACUGAGCC,**** NEW HIT #108 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13518,U67525.1,1,sp|U67525.1|MJU67525 Methanococcus jannaschii section 67 of 150 of the complete genome.,0,165,7289,7344,39.04,CGCGAUGAUGAGUGCCGACUUCACUGAACUGUGAUGAAACCUGGGACAGCUGAGCG,**** NEW HIT #109 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13540,U67547.1,1,sp|U67547.1|MJU67547 Methanococcus jannaschii section 89 of 150 of the complete genome.,0,166,6820,6878,35.13,GGGGAUGAUGAUACAUCGAUGUGCUGAAUAUUGAUGAUGAACGCGCCCUUCUCUGACCU,**** NEW HIT #110 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,23061,X59857.1,1,sp|X59857.1|PWEF1A P.woesei EF-1alpha; S10 & tRNA genes for elongation factor-1alpha; ribosomal protein S10 and tRNA-Ser,0,167,407,463,28.80,GGCUAUGAGGAAAUCGGUCUUAGCUGAGCUUAUGAUGAAAGUGGUCACCGCCGAGCC,AE010241.1/4821-4877 X59857.1/407-463,,0,57 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,23090,L22346.1,1,sp|L22346.1|PYWAMYA Pyrococcus furiosus alpha-amylase (amyA) gene; complete cds.,1,168,2711,2654,24.26,GCCGAUGAGGGAGUCUUUCGGGCCCUGAUUGGUGAUGAGGGCCUCCCUAUCCCGAGGC,**** NEW HIT (duplicate of new hit #20) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,30451,X60821.1,1,sp|X60821.1|SMTHR S.marcescens thrA1A2BC genes for aspartokinase; homoserine dehydrogenase; homoserine kinase and threonine synthase,1,169,2368,2310,24.40,GCCGAUGACGAACACUUCGAUCACCUGAUCGGUGUUGAACAGCAUCUGGUGGCUGACGC,**** NEW HIT #112 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,30452,D10385.1,1,sp|D10385.1|SMTHR1 Serratia marcescens thrA1-1/A2-1 gene for aspartokinase-homoserine dehydrogenase; complete cds.,1,170,1633,1575,24.40,GCCGAUGACGAACACUUCGAUCACCUGAUCGGUGUUGAACAGCAUCUGGUGGCUGACGC,**** NEW HIT (duplicate of new hit #112) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,30453,D10386.1,1,sp|D10386.1|SMTHR2 Serratia marcescens thrA1+/A2-2 gene for aspartokinase-homoserine dehydrogenase; complete cds.,1,171,1633,1575,24.40,GCCGAUGACGAACACUUCGAUCACCUGAUCGGUGUUGAACAGCAUCUGGUGGCUGACGC,**** NEW HIT (duplicate of new hit #112) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,30454,D10387.1,1,sp|D10387.1|SMTHR3 Serratia marcescens thrA1-5/A2-5/BC gene for aspartokinase-homoserine dehydrogenase; complete cds.,1,172,2368,2310,24.40,GCCGAUGACGAACACUUCGAUCACCUGAUCGGUGUUGAACAGCAUCUGGUGGCUGACGC,**** NEW HIT (duplicate of new hit #112) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,33956,Y18930.1,1,sp|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA fragment; strain P2,0,173,60111,60166,39.44,GGGAAUGAUGAGCCACGCCAGAACUGAGCCAGGAUGAACGGCUUGGGAGCUGACCC,**** NEW HIT (duplicate of new hit #12) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,33956,Y18930.1,1,sp|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA fragment; strain P2,1,174,78507,78453,29.31,GGAAAUGAUGAGGGUUCCAGAGCUGAAGCGUGAUGAAUGGUUGACACGCUGACCC,**** NEW HIT (duplicate of new hit #11) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,35347,AJ010405.1,1,sp|AJ010405.1|SUL010405 Sulfolobus sp. NOB8H2 conjugative plasmid pNOB8,1,175,23236,23181,23.98,GGGGAUGAUGAGCACGACACGAGUUGACCUAUGAUAGGACGCCGUUGCUCUGACCU,**** NEW HIT #118 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,36522,U95207.1,1,sp|U95207.1|TSU95207 Thermococcus sp. AN1 signal recognition particle receptor alpha subunit (srp alpha) gene; complete cds.,0,176,9,64,23.90,GCCGAUGAUGAGUGGCUUCGGGUCCGAGGGGUGAGGACACCAGCUAUCGCUGAGGC,**** NEW HIT #119 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4215,AC012601.7,1,sp|AC012601.7|AC012601 Homo sapiens chromosome 5 clone CTC-288O10; complete sequence.,0,177,87715,87769,23.98,UGAGAUGAUGUCUUUUGCAUCAUCUGAGUGUGAUGAUGUUUUAGUUUGCUGAGUA,**** NEW HIT #120 ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,3722,AL450445.6,1,sp|AL450445.6|AL450445 Human DNA sequence from clone RP11-411G9 on chromosome 13,1,178,43204,43150,23.98,UGAGAUGAUGUCUUUUGCAUCAUCUGAGUGUGAUGAUGUUUUAGUUUGCUGAGUA,**** NEW HIT (duplicate of new hit #120) ****,,2,0 ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00095.cm (global),/projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz,3533,AL121914.31,1,sp|AL121914.31|HSJ1167H4 Human DNA sequence from clone RP5-1167H4 on chromosome 20 Contains ESTs; STSs; GSSs and two CpG islands. Contains a novel gene;,1,179,118166,118114,23.97,GGAGGUUAUGAAGUUGGCCUCUGAGUGGUGAUGUGUAUUCUGGAGGCUGAGCC,**** NEW HIT #122 ****,,2,0 THINGS IN Rfam THAT WEREN'T FOUND: # hits found that weren't in Rfam: 123 (totally new = 123, overlaps hit in Rfam = 0, overlap hits with more than 10 nucs = 0) # Rfam hits not found: 0 (no overlap of >= 10 nucs: 0) # Rfam seqs not found: 0 (no overlap of >= 10 nucs: too tricky to calculate)