Params: ./cmzasha --no-stderr --filter 150 23.5 Rfam/cm/RF00095.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00095_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: bicycle.cs.washington.edu pid: 24565 ----cmFile: Rfam/cm/RF00095.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5540,sp|AC008043.5|AC008043 Drosophila melanogaster, chromosome 3R, region 94A-94A, BAC clone BACR05A08, complete sequence. ----isReversed: 0 ----hitSequence: GGCGAUGAUGAUGACGAGCCACGACUGUGGCGAUGAUGAUGAUAACGAUGAUGGCUGUGUU hit 0 : 156537 156597 (fwd) 24.25 bits <<<_____________._____________...._________________________> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg....GGUGAUGAGGacucCGGaUaGCUGAg 55 : CGAUGAUGA + C+ GCC + CUG GG G+UGAUGA AC+ +G AU GCUG G 156537 GGCGAUGAUGAUGACGaGCCACGACUGUGGcgauGAUGAUGAUAACGAUG-AUGGCUGUG 156595 >> 56 cc 57 : 156596 UU 156597 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5803,sp|AC009915.5|AC009915 Drosophila melanogaster, chromosome 3R, region 94A-94A, BAC clone BACR09L14, complete sequence. ----isReversed: 0 ----hitSequence: GGCGAUGAUGAUGACGAGCCACGACUGUGGCGAUGAUGAUGAUAACGAUGAUGGCUGUGUU hit 1 : 49171 49231 (fwd) 24.25 bits <<<_____________._____________...._________________________> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg....GGUGAUGAGGacucCGGaUaGCUGAg 55 : CGAUGAUGA + C+ GCC + CUG GG G+UGAUGA AC+ +G AU GCUG G 49171 GGCGAUGAUGAUGACGaGCCACGACUGUGGcgauGAUGAUGAUAACGAUG-AUGGCUGUG 49229 >> 56 cc 57 : 49230 UU 49231 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7754,sp|AE003738.3|AE003738 Drosophila melanogaster chromosome 3R, section 76 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: GGCGAUGAUGAUGACGAGCCACGACUGUGGCGAUGAUGAUGAUAACGAUGAUGGCUGUGUU hit 2 : 139351 139411 (fwd) 24.25 bits <<<_____________._____________...._________________________> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg....GGUGAUGAGGacucCGGaUaGCUGAg 55 : CGAUGAUGA + C+ GCC + CUG GG G+UGAUGA AC+ +G AU GCUG G 139351 GGCGAUGAUGAUGACGaGCCACGACUGUGGcgauGAUGAUGAUAACGAUG-AUGGCUGUG 139409 >> 56 cc 57 : 139410 UU 139411 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6820,sp|AC125125.4|AC125125 Mus musculus chromosome 8 clone RP24-274E6, complete sequence. ----isReversed: 1 ----hitSequence: AGAGGUGAGGAAGAUGGGGUGACCCUGAGGCAUGAUGUGGAGCUGCAACUCUGAUCU hit 3 : 6997 6941 (rev) 25.13 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:G UGA GA++ ++ G +CCUGAGG +UGAUG GGA A CUGA:C: 173805 AGAGGUGAGGAAGAUGgGGUGACCCUGAGGc-AUGAUGUGGAGCUGC-AACUCUGAUCU 173861 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26413,sp|AL831746.5|AL831746 Mouse DNA sequence from clone RP23-67O11 on chromosome 4 ----isReversed: 0 ----hitSequence: CUCAAUUAGGAUCUGUGCGUUCGAUGAGAGGUGAUGAAGGGGCGGGUUCACUGAGGA hit 4 : 142200 142256 (fwd) 23.67 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :C+AU A GA C+ UGC U + UGAG GGUGAUGA+G +C GG+U CUGAG: 142200 CUCAAUUAGGAUCUGUGCGUUCGAUGAGAGGUGAUGAAGGGGCGGGUUCACUGAGGA 142256 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----sequence: #219,sp|AF217253.1|AF217253 Bacteriophage P22 complete genome. ----isReversed: 0 ----hitSequence: UCAGAUGAUGAGAAUCCUCCCGCUGAAGGUGAUGAUCACGGCCUUCGCUCAAGC hit 5 : 29983 30036 (fwd) 25.26 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::GAUGAUGAG+ + +C ++ CUGA+G GUGAUGA +AC++C +U GCU A:: 29983 UCAGAUGAUGAGAAU-CCUCCCGCUGAAG-GUGAUGAUCACGGCC-UUCGCUCAAGC 30036 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----sequence: #576,sp|AF527608.1|AF527608 Bacteriophage P22-pbi, complete sequence. ----isReversed: 0 ----hitSequence: UCAGAUGAUGAGAAUCCUCCCGCUGAAGGUGAUGAUCACGGCCUUCGCUCAAGC hit 6 : 6508 6561 (fwd) 25.26 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::GAUGAUGAG+ + +C ++ CUGA+G GUGAUGA +AC++C +U GCU A:: 6508 UCAGAUGAUGAGAAU-CCUCCCGCUGAAG-GUGAUGAUCACGGCC-UUCGCUCAAGC 6561 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----sequence: #763,sp|AY121860.1|AY121860 Enterobacteria phage P22 section B, partial genomic sequence. ----isReversed: 0 ----hitSequence: UCAGAUGAUGAGAAUCCUCCCGCUGAAGGUGAUGAUCACGGCCUUCGCUCAAGC hit 7 : 281 334 (fwd) 25.26 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::GAUGAUGAG+ + +C ++ CUGA+G GUGAUGA +AC++C +U GCU A:: 281 UCAGAUGAUGAGAAU-CCUCCCGCUGAAG-GUGAUGAUCACGGCC-UUCGCUCAAGC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----sequence: #2048,sp|M59749.1|POP22PAC Bacteriophage P22 packaging genes. ----isReversed: 0 ----hitSequence: UCAGAUGAUGAGAAUCCUCCCGCUGAAGGUGAUGAUCACGGCCUUCGCUCAAGC hit 8 : 6795 6848 (fwd) 25.26 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::GAUGAUGAG+ + +C ++ CUGA+G GUGAUGA +AC++C +U GCU A:: 6795 UCAGAUGAUGAGAAU-CCUCCCGCUGAAG-GUGAUGAUCACGGCC-UUCGCUCAAGC 6848 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #17306,sp|AE001092.1|AE001092 Archaeoglobus fulgidus DSM 4304 section 15 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: AGCGAUGAUGAAAGGGCCCCUCUGAACGGUGAUGAGGGUUUUGAGUUCUGAGCU hit 9 : 10295 10242 (rev) 40.02 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGAUGA++ ++CC + CUGA+ GGUGAUGAGG +U +G A + CUGAGC: 1525 AGCGAUGAUGAAAGGGCCC--CUCUGAACGGUGAUGAGGGUUUUG-AGUUCUGAGCU 1578 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #17327,sp|AE001113.1|AE001113 Archaeoglobus fulgidus DSM 4304 section 166 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: AUAGGUGAUGAAUCUAGCAGGAUCUGAGCCGUGGCGAUGAUGACGGCUGUACUCUCUGAUUA hit 10 : 9719 9658 (rev) 23.93 bits <<<__________________________......_________________________ 1 ggcGAUGAUGAgcccugCCugacCUGAgg......GGUGAUGAGGacucCGGaUaGCUGA 54 : :G UGAUGA+ C+ GC GA CUGAG G+UGAUGA G CU++ U CUGA 426 AUAGGUGAUGAAUCUAGCAGGAUCUGAGCcguggcGAUGAUGACGGCUGUA-CUCUCUGA 484 >>> 55 gcc 57 : : 485 UUA 487 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #21448,sp|AE006700.1|AE006700 Sulfolobus solfataricus section 59 of 272 of the complete genome. ----isReversed: 0 ----hitSequence: GGAAAUGAUGAGGGUUCCAGAGCUGAAGCGUGAUGAAUGGUUGACACGCUGACCC hit 11 : 570 624 (fwd) 29.31 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GG +AUGAUGAG+ +U CC GA CUGA+G GUGAUGA+ U GCUGA CC 570 GGAAAUGAUGAGGGUU-CCAGAGCUGAAGc-GUGAUGAAUGGUUGA-CACGCUGACCC 624 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #21449,sp|AE006701.1|AE006701 Sulfolobus solfataricus section 60 of 272 of the complete genome. ----isReversed: 1 ----hitSequence: GGGAAUGAUGAGCCACGCCAGAACUGAGCCAGGAUGAACGGCUUGGGAGCUGACCC hit 12 : 5711 5656 (rev) 39.44 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GG:+AUGAUGAGCC GCC GA CUGAG + GAUGA++ +GG AGCUGA:CC 4319 GGGAAUGAUGAGCCACGCCAGAACUGAGCc-AGGAUGAACGGCUUGG-GAGCUGACCC 4374 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #21574,sp|AE006826.1|AE006826 Sulfolobus solfataricus section 185 of 272 of the complete genome. ----isReversed: 1 ----hitSequence: AUAUAUGAGGAAACCAACCUUAACUGAAGCGUGAUGAAGGGUUGUUUCACUGAUGU hit 13 : 6650 6595 (rev) 27.14 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::: AUGA GA++CC CCU A CUGA+G GUGAUGA+G U +U CUGA::: 6674 AUAUAUGAGGAAACCAACCUUAACUGAAGc-GUGAUGAAGGGUUGU-UUCACUGAUGU 6729 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #21613,sp|AE006865.1|AE006865 Sulfolobus solfataricus section 224 of 272 of the complete genome. ----isReversed: 0 ----hitSequence: AAAAAUGAGGAAACCACCAGUAAAUGAACUGAUGAUUAAACCUUCAGUGGGCUGAUUU hit 14 : 2782 2839 (fwd) 27.89 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::+AUGA GA++CC +C A UGA+ G+UGAU A+ +CU C G+ GCUGA::: 2782 AAAAAUGAGGAAACCACCAGUAAAUGAACuGAUGAUUAAACCUUCAGUGGGCUGAUUU 2839 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #21632,sp|AE006884.1|AE006884 Sulfolobus solfataricus section 243 of 272 of the complete genome. ----isReversed: 1 ----hitSequence: UUAGUGAAGAGAACUCCCCAAGCUGAGCUGUGACGAGUCCUUUAAGUGCUGAUCU hit 15 : 13343 13289 (rev) 25.46 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :G UGA GAG+ CU+CC A CUGAG GUGA GAG +CU + A +GCUGA: : 142 UUAG-UGAAGAGAACUCCCCAAGCUGAGCu-GUGACGAGUCCUUUA-AGUGCUGAUCU 196 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24470,sp|AE009753.1|AE009753 Pyrobaculum aerophilum strain IM2 section 8 of 201 of the complete genome. ----isReversed: 1 ----hitSequence: AUUUUGAUGAGCCUAUCCCCUCGCUGAGGCGUGACGACGCGUCGCGUUGCUGAAAU hit 16 : 7505 7450 (rev) 23.96 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::: UGAUGAGCC+ +CC + CUGAGG GUGA GA G+ UC G U+GCUGA::: 2789 AUUU-UGAUGAGCCUAuCCCCUCGCUGAGGc-GUGACGACGCGUCGCG-UUGCUGAAAU 2844 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24837,sp|AE010126.1|AE010126 Pyrococcus furiosus DSM 3638, section 1 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GUCGAUGACGAAACCGGCACUAUCUGAAUGAUGAUGAGCACUCGGUUGUCUGAGAC hit 17 : 10963 10908 (rev) 46.62 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:CGAUGA GA++CC+GC A CUGA+ G+UGAUGAG+ACUC G +U CUGAG:C 3597 GUCGAUGACGAAACCGGCACUAUCUGAAUGAUGAUGAGCACUCGG-UUGUCUGAGAC 3652 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24852,sp|AE010141.1|AE010141 Pyrococcus furiosus DSM 3638, section 16 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: GGGGAUGAUGAGUUUUUCCCUCACUCUGAUUAGUGAUGAGGAGCCGAUGCACUGACCU hit 18 : 7540 7597 (fwd) 38.78 bits <<<_____________._______.______._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugac.CUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGAG ++U +CCU+AC CUGA GUGAUGAGGA C + CUGA:C: 7540 GGGGAUGAUGAGUUUUuCCCUCACuCUGAUUa-GUGAUGAGGAGCCGA-UGCACUGACCU 7597 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24852,sp|AE010141.1|AE010141 Pyrococcus furiosus DSM 3638, section 16 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: UGGGAUGAUGACCUUUUGCUUUACUGAACACAUGAUGACCACGCCCUUCGCUGACCU hit 19 : 7409 7353 (rev) 35.56 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA C++U CU CUGA+ +UGAUGA +AC+CC +U GCUGA:C: 4944 UGGGAUGAUGACCUUUUGCUUUACUGAACac-AUGAUGACCACGCCC-UUCGCUGACCU 5000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24853,sp|AE010142.1|AE010142 Pyrococcus furiosus DSM 3638, section 17 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: GGCGAUGAGGAGCUGGAUCCGAUCUGAUGUUUAUGAUGAGGGAGGUACAAGCUGAGCC hit 20 : 40 97 (fwd) 27.50 bits <<<__________________________..._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg...GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGCGAUGA GAGC+ + C GA CUGA G +UGAUGAGG +++ AGCUGAGCC 40 GGCGAUGAGGAGCUGGAUCCGAUCUGAUGuuu-AUGAUGAGGGAGGUA-CAAGCUGAGCC 97 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24861,sp|AE010150.1|AE010150 Pyrococcus furiosus DSM 3638, section 25 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: UGAAUGAUGAGCGCCAUCCGAUACUGAGGGCAUGAUGACCGGAUUCCUGGCUGAUCU hit 21 : 10493 10437 (rev) 23.52 bits <<<_____________._____________.._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:+ UGAUGAGC C CC CUGAGG +UGAUGA + + U GCUGA:C: 1394 UGAA-UGAUGAGCGCCaUCCGAUACUGAGGgc-AUGAUGACCGGAUUC-CUGGCUGAUCU 1450 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24862,sp|AE010151.1|AE010151 Pyrococcus furiosus DSM 3638, section 26 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGAUGAGGGAGUCUUUCGGGCCCUGAUUGGUGAUGAGGGCCUCCCUAUCCCGAGGC hit 22 : 9949 9892 (rev) 24.26 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:CGAUGA G +++CU C G+CCUGA GGUGAUGAGG C C + + C GAG:C 999 GCCGAUGAGGGAGUCUuUCGGGCCCUGAUUGGUGAUGAGGGCCUCCCUAUCCCGAGGC 1056 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24867,sp|AE010156.1|AE010156 Pyrococcus furiosus DSM 3638, section 31 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: AGCAAUGAUGAGCUCUAUCCCUAUCUGACCCAUGAUGACUGUAGCGCGCGCUGAGCU hit 23 : 10096 10040 (rev) 33.54 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GC+AUGAUGAGC+CU CC A CUGA +UGAUGA + +CG GCUGAGC: 3259 AGCAAUGAUGAGCUCUaUCCCUAUCUGACCc-AUGAUGACUGUAGCG-CGCGCUGAGCU 3315 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24880,sp|AE010169.1|AE010169 Pyrococcus furiosus DSM 3638, section 44 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: AGGGAUGAUGAGAUUUGCUACCUCUGAAAAUAAUGAUGAACCCUGCCGUUACUGACCG hit 24 : 2778 2835 (fwd) 42.31 bits <<<__________________________..._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg...GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:GAUGAUGAG+++UGC ++ CUGA+ +UGAUGA+++CU+C G U+ CUGA:C 2778 AGGGAUGAUGAGAUUUGCUACCUCUGAAAaua-AUGAUGAACCCUGCCG-UUACUGACCG 2835 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24882,sp|AE010171.1|AE010171 Pyrococcus furiosus DSM 3638, section 46 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GGGGAUGAUGAGUUUGCCGAGUGCUGAGCUAGUGAUGAAUAAACAGUCGCCUGACUU hit 25 : 947 891 (rev) 23.87 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGAG ++++C G CUGAG GUGAUGA+ A C G+ CUGA: : 10615 GGGGAUGAUGAGUUUGCCGAGUGCUGAGCua-GUGAUGAAUA-AACAGUCGCCUGACUU 10671 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24885,sp|AE010174.1|AE010174 Pyrococcus furiosus DSM 3638, section 49 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: CGCGAUGAAGAAAGCGAACUGCUCUGAGAGAUGAUGAAAAGGGCCUAACAGAGCG hit 26 : 5607 5553 (rev) 25.86 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 GCGAUGA GA++ C+ CUG+ CUGAG G+UGAUGA+ A ++C UA C GAGC 3703 CGCGAUGAAGAAAGCGAACUGCUCUGAGAGAUGAUGAAAAGGGCC--UAACAGAGCG 3757 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24887,sp|AE010176.1|AE010176 Pyrococcus furiosus DSM 3638, section 51 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GGCGAUGACGAAGGGUGACGUCCCUGAGUGGUGAUGAAGCCCGCGAUAGCUGAGCA hit 27 : 4657 4602 (rev) 45.99 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGA GA++ UG C +CCUGAG GGUGAUGA+G+C +CG AUAGCUGAGC: 6011 GGCGAUGACGAAGGGUGACGUCCCUGAGUGGUGAUGAAGCCCGCG-AUAGCUGAGCA 6066 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24890,sp|AE010179.1|AE010179 Pyrococcus furiosus DSM 3638, section 54 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GGCGAUGAUGUAGAUUAGCCCCGACUGAGCGGUGAUGAAGCUGGCCCAUCGCUGAGUC hit 28 : 2375 2318 (rev) 45.77 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G CGAUGAUG ++ +U GCC + CUGAG GGUGAUGA+G++++C AU GCUGAG C 11243 GGCGAUGAUGUAGAUUaGCCCCGACUGAGCGGUGAUGAAGCUGGCCCAUCGCUGAGUC 11300 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24898,sp|AE010187.1|AE010187 Pyrococcus furiosus DSM 3638, section 62 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: GGCGAUGAUGAUGCCUUCCGCACCUGAUUGGUGAGGAGUGGACGGCUUCCUGAGCC hit 29 : 7809 7864 (fwd) 34.57 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGCGAUGAUGA +CCU CC +ACCUGA GGUGA GAG C G U+ CUGAGCC 7809 GGCGAUGAUGAUGCCUUCCGCACCUGAUUGGUGAGGAGUGGACGG-CUUCCUGAGCC 7864 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24909,sp|AE010198.1|AE010198 Pyrococcus furiosus DSM 3638, section 73 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: UUUGAUGAUGAAACAGCCAGGACCCUGAUGAGAUGAUGAAUGGUGGGCUUAGCUGACGU hit 30 : 12919 12861 (rev) 30.94 bits <<<____________________.______._________________________>>> 1 ggcGAUGAUGAgcccugCCugac.CUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GAUGAUGA++C ++C GAC CUGA G G+UGAUGA+ U+ G +UAGCUGA::: 1566 UUUGAUGAUGAAACAGCCAGGACcCUGAUGaGAUGAUGAAUGGUGGGCUUAGCUGACGU 1624 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24917,sp|AE010206.1|AE010206 Pyrococcus furiosus DSM 3638, section 81 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGAUGAAGAGCGAGCCCGGCCCUGAGGAGAUGAUGAAAGCUACCACUUCUGAGGU hit 31 : 9388 9332 (rev) 37.68 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::CGAUGA GAGC ++CC G+CCUGAGG G+UGAUGA+ CU C A + CUGAG:: 3571 GCCGAUGAAGAGCGAGCCCGGCCCUGAGGaGAUGAUGAAAGCUACC-ACUUCUGAGGU 3627 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24927,sp|AE010216.1|AE010216 Pyrococcus furiosus DSM 3638, section 91 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GCAGAUGAUGAGCUACUCCCGGCUGAAAGAUGAUGAACCACCUACCGGCUGAGGU hit 32 : 5764 5710 (rev) 27.28 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :: GAUGAUGAGC+ CC CUGA+ G+UGAUGA+++ C+ GCUGA :: 4136 GCAGAUGAUGAGCUACUCCC-GGCUGAAAGAUGAUGAACCACCUA-CCGGCUGAGGU 4190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24947,sp|AE010236.1|AE010236 Pyrococcus furiosus DSM 3638, section 111 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: GGCGAUGAUGAAUAGCAAGCCACCUGAAGAGUGAUGAGGUGAACACCCCCUGAGCC hit 33 : 577 632 (fwd) 23.50 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGCGAUGAUGA+ +ACCUGA+G GUGAUGAGG C CUGAGCC 577 GGCGAUGAUGAAUAGCAAGCCACCUGAAGa-GUGAUGAGGUGAACA-CCCCCUGAGCC 632 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24952,sp|AE010241.1|AE010241 Pyrococcus furiosus DSM 3638, section 116 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: CGGGAUGAGGAAUUCAGCCUAAGCUGAAGUAUGAUGAGGGAGUGACGGACUGACCG hit 34 : 3073 3128 (fwd) 32.23 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:GAUGA GA+ +C GCCU A CUGA+G +UGAUGAGG + CUGA:C 3073 CGGGAUGAGGAAUUCAGCCUAAGCUGAAGu-AUGAUGAGGGAGUGA-CGGACUGACCG 3128 ----endhit ----hitSequence: GGCAAUGAUGAGUGAUGGGCGAACUGAAAUAGUGAUGACGGUAGGUGAUCUCUGAGCC hit 35 : 3008 3065 (fwd) 29.78 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGC+AUGAUGAG UG GA CUGA+ GUGAUGA G + + GAU CUGAGCC 3008 GGCAAUGAUGAGUGAUGGGCGAACUGAAAua-GUGAUGACGGUAGGUGAUCUCUGAGCC 3065 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24952,sp|AE010241.1|AE010241 Pyrococcus furiosus DSM 3638, section 116 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: GGCUAUGAGGAAAUCGGUCUUAGCUGAGCUUAUGAUGAAAGUGGUCACCGCCGAGCC hit 36 : 4821 4877 (fwd) 28.80 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGC AUGA GA+++C+G CU A CUGAG +UGAUGA+ ++++ A GC GAGCC 4821 GGCUAUGAGGAAAUCGGUCUUAGCUGAGCuu-AUGAUGAAAGUGGUC-ACCGCCGAGCC 4877 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24955,sp|AE010244.1|AE010244 Pyrococcus furiosus DSM 3638, section 119 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: UCUGAUGAUGAUCCUUCCCCUCAACUGAGAGGUGAUGAGCACACCGGUAGGCUGAGGU hit 37 : 6908 6965 (fwd) 44.33 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GAUGAUGA CC+U +CCU+A CUGAG GGUGAUGAG+AC CCGG+ GCUGA::: 6908 UCUGAUGAUGAUCCUUcCCCUCAACUGAGAGGUGAUGAGCACACCGGUAGGCUGAGGU 6965 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24957,sp|AE010246.1|AE010246 Pyrococcus furiosus DSM 3638, section 121 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: UGAGAUGAUGAGAACUCCCUGAUCUGAGCGGUGAUGAGGACCGGUGAUCUGAAAA hit 38 : 8198 8144 (rev) 44.98 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGAG+ CU+CCUGA CUGAG GGUGAUGAGGA CCGG+ A CUGA: : 3678 UGAGAUGAUGAGAACUCCCUGAUCUGAGCGGUGAUGAGGA--CCGGUGAUCUGAAAA 3732 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24960,sp|AE010249.1|AE010249 Pyrococcus furiosus DSM 3638, section 124 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: GUAGAUGAUGAGGCCAUCCCCUCUGAUCUGUGAUGAGUGGGUGAGCUGGCUGAUAC hit 39 : 3483 3538 (fwd) 34.66 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGAUGAG+CC CC + CUGA GUGAUGAG + G U GCUGA::C 3483 GUAGAUGAUGAGGCCAUCCC-CUCUGAUCu-GUGAUGAGUGGGUGAGCUGGCUGAUAC 3538 ----endhit ----hitSequence: AGGGAUGAUGAAGUUCGCUAGACCUGAGGAGUGAUGAGCCCUAGGGUAUCUGACCA hit 40 : 3395 3450 (fwd) 46.85 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA++++ GC GACCUGAGG GUGAUGAG++CU GG UA CUGA:C: 3395 AGGGAUGAUGAAGUUCGCUAGACCUGAGGa-GUGAUGAGCCCUAGGG-UAUCUGACCA 3450 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24963,sp|AE010252.1|AE010252 Pyrococcus furiosus DSM 3638, section 127 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: UGAGAUGAUGAAUAAACCCGUUGCUGAAAAAUGAUGAGAGGAUCGACUAGCUGACUA hit 41 : 9059 9115 (fwd) 32.82 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : GAUGAUGA+ +CC CUGA+ +UGAUGAG CG UAGCUGA : 9059 UGAGAUGAUGAAUAAACCCGUUGCUGAAAa-AUGAUGAGAGGAUCGACUAGCUGACUA 9115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24970,sp|AE010259.1|AE010259 Pyrococcus furiosus DSM 3638, section 134 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: AGCAAUGAUGAAGCCUCGAUUGGCUGAUUUGAUGAUUGGGAGGGACUUGGCUGAGCG hit 42 : 5866 5922 (fwd) 25.55 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GC+AUGAUGA++CCU+ U CUGA G+UGAU GGA ++ +U GCUGAGC 5866 AGCAAUGAUGAAGCCUCGAUUGGCUGAUUuGAUGAUUGGGAGGGAC-UUGGCUGAGCG 5922 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24976,sp|AE010265.1|AE010265 Pyrococcus furiosus DSM 3638, section 140 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: AAAGAUGAUGAACCCGCGCAGCUCUGAAGGGAUGAUGAGGAUCUUAAGUGCUGAUCU hit 43 : 8121 8065 (rev) 44.48 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GAUGAUGA+CCC++ C G+ CUGA+G G+UGAUGAGGA+ + A +GCUGA::: 4332 AAAGAUGAUGAACCCGCGCAGCUCUGAAGgGAUGAUGAGGAUCUUA-AGUGCUGAUCU 4388 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24985,sp|AE010274.1|AE010274 Pyrococcus furiosus DSM 3638, section 149 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: AGGGAUGAUGAAGGAGAUUUCGGCAGAGGUGUGAAGAGACUCGCAUGGGCUGACCA hit 44 : 2256 2201 (rev) 24.16 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA++ + U+ C GAGG GUGA GAG ++ +C + GCUGA:C: 8290 AGGGAUGAUGAAGGAGAUUUCGGCAGAGGu-GUGAAGAGACUCGCA-UGGGCUGACCA 8345 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24988,sp|AE010277.1|AE010277 Pyrococcus furiosus DSM 3638, section 152 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GCGGAUGAUGUGCCUUGCCCAGCCUGAAAGGUGAUGAUGUCGGUAUUAGCUGACGC hit 45 : 2204 2149 (rev) 46.52 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGAUG GCC+UGCC CCUGA+ GGUGAUGA G C+++ +UAGCUGA::C 5379 GCGGAUGAUGUGCCUUGCCCAGCCUGAAAGGUGAUGAUGUCGGUA-UUAGCUGACGC 5434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24995,sp|AE010284.1|AE010284 Pyrococcus furiosus DSM 3638, section 159 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: AUGUAUGAUGAGGAAUCGGGGAGCUGAGAUGUGAUGAAAUCCAUCAGAGCUGACUA hit 46 : 10831 10776 (rev) 27.23 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : : AUGAUGAG+ U+ GA CUGAG GUGAUGA+ C + A AGCUGA: : 26 AUGUAUGAUGAGGAAUCGGGGAGCUGAGAu-GUGAUGAAAUCCAUC-AGAGCUGACUA 81 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24997,sp|AE010286.1|AE010286 Pyrococcus furiosus DSM 3638, section 161 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GGUGUGAUGAAAAGGCGGAUUGCUGAGAGGAUGAUGAAGACCUUAGGGGCUGAUCA hit 47 : 11321 11266 (rev) 26.78 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:G UGAUGA++ ++ CUGAG G+UGAUGA+GAC + G GCUGA:C: 883 GGUG-UGAUGAAAAGGCGGAUUGCUGAGAgGAUGAUGAAGACCUUAG-GGGCUGAUCA 938 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #24999,sp|AE010288.1|AE010288 Pyrococcus furiosus DSM 3638, section 163 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: UGAGAUGAUGAACUCGGCAGGUCCUGAAGGAUGAUGAGGAUCUUGAGUGCUGAUCA hit 48 : 8137 8082 (rev) 50.73 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA+C+C+GC G CCUGA+GG+UGAUGAGGA+ +G A +GCUGA:C: 4505 UGAGAUGAUGAACUCGGCAGGUCCUGAAGGAUGAUGAGGAUCUUG-AGUGCUGAUCA 4560 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25003,sp|AE010292.1|AE010292 Pyrococcus furiosus DSM 3638, section 167 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: ACCGAUGAGGAGCGUUAGCCACGCUGAAGAUGAUGACAAGAGGGUUAGCCGAGGU hit 49 : 12900 12954 (fwd) 25.24 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::CGAUGA GAGC +U GCC + CUGA+G +UGAUGA A + G +UAGC GAG:: 12900 ACCGAUGAGGAGCGUUaGCCA-CGCUGAAG-AUGAUGACAAGAGGG-UUAGCCGAGGU 12954 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25003,sp|AE010292.1|AE010292 Pyrococcus furiosus DSM 3638, section 167 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: GGGGAUGAUGAGCGUUUACCGGUCUGAGUUGUGAUGAUACUGGCACUGUCUGACCU hit 50 : 12851 12796 (rev) 37.09 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGAGC +U C G CUGAG GUGAUGA ++++C U CUGA:C: 214 GGGGAUGAUGAGCGUUUACCGGUCUGAGUu-GUGAUGAUACUGGCA-CUGUCUGACCU 269 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25007,sp|AE010296.1|AE010296 Pyrococcus furiosus DSM 3638, section 171 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: UCCGAUGAUGAGUCUCGCUCGGCUGAUAGAUGAUGUAGGGCAUACUGGCUGAGGU hit 51 : 118 172 (fwd) 28.92 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::CGAUGAUGAG C+ GC CUGA G+UGAUG +G + U GCUGAG:: 118 UCCGAUGAUGAGUCUCGCUC-GGCUGAUAGAUGAUGUAGGGCAUA-CUGGCUGAGGU 172 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25007,sp|AE010296.1|AE010296 Pyrococcus furiosus DSM 3638, section 171 of 173 of the complete genome. ----isReversed: 0 ----hitSequence: CCCAAUGAUGAUGGAUCAACCGGCUGAAGUAUGAUGAGGUCCGCAUCACCUGAGGG hit 52 : 7909 7964 (fwd) 28.89 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :C+AUGAUGA + U+ + CUGA+G +UGAUGAGG C +C + A CUGAG: 7909 CCCAAUGAUGAUGGAUCAACCGGCUGAAGu-AUGAUGAGGUCCGCA-UCACCUGAGGG 7964 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25007,sp|AE010296.1|AE010296 Pyrococcus furiosus DSM 3638, section 171 of 173 of the complete genome. ----isReversed: 1 ----hitSequence: CGGGAUGAGGAAGCCGAGGACACCUGAUGGAUGAUGACUCUUCGCUUCGCCGACCG hit 53 : 10251 10196 (rev) 24.95 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:GAUGA GA++CC+ G ACCUGA GG+UGAUGA ++UC +U GC GA:C 841 CGGGAUGAGGAAGCCGaGGAC-ACCUGAUGGAUGAUGACUCUUCGC-UUCGCCGACCG 896 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25022,sp|AE010314.1|AE010314 Methanopyrus kandleri AV19 section 13 of 157 of the complete genome. ----isReversed: 0 ----hitSequence: CACGAUGAUGAGGAUACGGCGAGCGGAGAGGGUGAAGAGGAGACCGCGGGCUGAGCU hit 54 : 2798 2854 (fwd) 25.16 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::CGAUGAUGAG+ + + GA C GAG GGUGA GAGGA CCG GCUGAG:: 2798 CACGAUGAUGAGGAUACGGCGAGCGGAGAgGGUGAAGAGGAGACCG-CGGGCUGAGCU 2854 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25025,sp|AE010317.1|AE010317 Methanopyrus kandleri AV19 section 16 of 157 of the complete genome. ----isReversed: 0 ----hitSequence: GGGGAUGAUGAGGGUGAGGACCGACGGAGGGGUGAAGAGGGUCGCAGGCGCUGAGUU hit 55 : 10604 10660 (fwd) 27.95 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : GAUGAUGAG+ ++ G + C GAGGGGUGA GAGG + +C G GCUGA : 10604 GGGGAUGAUGAGGGUGaGGACCGACGGAGGGGUGAAGAGGGUCGCAG-GCGCUGAGUU 10660 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25030,sp|AE010322.1|AE010322 Methanopyrus kandleri AV19 section 21 of 157 of the complete genome. ----isReversed: 0 ----hitSequence: UGCGAUGAGGAGGUAUAGCCGCCUCUGACGCGGUGAUGAGGGCACUCGGGGCCGAGCA hit 56 : 873 930 (fwd) 32.82 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGA GAG++ U GCC ++ CUGA G GGUGAUGAGG C C+ G GC GAGC: 873 UGCGAUGAGGAGGUAUaGCCGCCUCUGACGcGGUGAUGAGGGCACUCG-GGGCCGAGCA 930 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25076,sp|AE010368.1|AE010368 Methanopyrus kandleri AV19 section 67 of 157 of the complete genome. ----isReversed: 0 ----hitSequence: CCCGAUGAAGAUCACGGCCUUCGCCUGAGACGUGACGAGAUCCACCCGAGCUGAGGG hit 57 : 11919 11975 (fwd) 27.31 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :CGAUGA GA C C+ +C U+ CCUGAG GUGA GAG C C AGCUGAG: 11919 CCCGAUGAAGAUCACGgCCUUCGCCUGAGAc-GUGACGAGAUCCACC-CGAGCUGAGGG 11975 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25079,sp|AE010371.1|AE010371 Methanopyrus kandleri AV19 section 70 of 157 of the complete genome. ----isReversed: 1 ----hitSequence: ACCGAUGACGAGAAGUCGCGGGUCCGAGUGGUGAGGAACCCAGCUCACGCUGAGGU hit 58 : 2568 2513 (rev) 24.49 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::CGAUGA GAG+ U+ C G C GAG GGUGA GA+++C +C GCUGAG:: 11625 ACCGAUGACGAGAAGUCGCGGGUCCGAGUGGUGAGGAACCCAGCU-CACGCUGAGGU 11680 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25081,sp|AE010373.1|AE010373 Methanopyrus kandleri AV19 section 72 of 157 of the complete genome. ----isReversed: 1 ----hitSequence: AGGGAUGAUGAGUCUGGCCUUCGCCGAGCCGGAUGAGGAAGGCACGAGCUACUGAUCC hit 59 : 11277 11220 (rev) 24.24 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G GAUGAUGAG C++GCCU + C GAG G+UGA GA+G C C G + CUGA C 34 AGGGAUGAUGAGUCUGGCCUUCGCCGAGCcgGAUGAGGAAGGCACGAG-CUACUGAUCC 91 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25086,sp|AE010378.1|AE010378 Methanopyrus kandleri AV19 section 77 of 157 of the complete genome. ----isReversed: 1 ----hitSequence: GCGGAUGACGAUGUCCCGCGCUACUGAAGGAUGAUGACGAUUGGACCGCGGACGC hit 60 : 9676 9622 (rev) 30.82 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGA GA ++C + C + CUGA+GG+UGAUGA GA +GGA GC GA::C 3482 GCGGAUGACGAUGUCCCGCGCUACUGAAGGAUGAUGACGA--UUGGACCGCGGACGC 3536 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25120,sp|AE010412.1|AE010412 Methanopyrus kandleri AV19 section 111 of 157 of the complete genome. ----isReversed: 0 ----hitSequence: GCCGAUGACGAGCCUGCCCCGGCGGGAUCGGUGACGAGGAUUGGCCUUUCCGAGGC hit 61 : 4893 4948 (fwd) 26.76 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:CGAUGA GAGCC+++CC G C GA GGUGA GAGGA+U+ U+ C GAG:C 4893 GCCGAUGACGAGCCUGCCCCGGCGGGAUCGGUGACGAGGAUUGGC-CUUUCCGAGGC 4948 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25147,sp|AE010439.1|AE010439 Methanopyrus kandleri AV19 section 138 of 157 of the complete genome. ----isReversed: 1 ----hitSequence: CCCGAUGACGAGCCCACCCCGGACGGACGGAUGACGAAGGGAGCGUUUGCGGAGGG hit 62 : 9393 9338 (rev) 26.08 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :CGAUGA GAGCCC +CC G C GA GG+UGA GA+G +CG +U+GC GAG: 1777 CCCGAUGACGAGCCCACCCCGGACGGACGGAUGACGAAGGGAGCG-UUUGCGGAGGG 1832 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #25378,sp|AE010670.1|AE010670 Methanosarcina acetivorans str. C2A, section 15 of 534 of the complete genome. ----isReversed: 1 ----hitSequence: GGCGAUGAUGAGAGUUACCCCAGCUGAGCAAAAGAUGAUGAGAACAAUUUCCUGAUGCC hit 63 : 9761 9703 (rev) 23.66 bits <<<__________________________.._________________________.>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGA.gcc 57 GGCGAUGAUGAG+ +U CC +A CUGAG + GAUGA GA C +U+ CUGA GCC 40 GGCGAUGAUGAGAGUUACCCCAGCUGAGCaa-AAGAUGAUGAGAACAAUUUCCUGAuGCC 98 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #31822,sp|AF013497.1|AF013497 Pyrococcus furiosus endo/exonuclease (fen-1) gene, complete cds. ----isReversed: 0 ----hitSequence: UCUGAUGAUGAUCCUUCCCCUCAACUGAGAGGUGAUGAGCACACCGGUAGGCUGAGGU hit 64 : 173 230 (fwd) 44.33 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GAUGAUGA CC+U +CCU+A CUGAG GGUGAUGAG+AC CCGG+ GCUGA::: 173 UCUGAUGAUGAUCCUUcCCCUCAACUGAGAGGUGAUGAGCACACCGGUAGGCUGAGGU 230 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #551,sp|AF195107.1|AF195107 Sulfolobus acidocaldarius sR13 small nucleolar RNA, complete sequence. ----isReversed: 0 ----hitSequence: AGGAUGAUGUACUUUCACCCUCACUGAAAGGUGAGGAUGAGUCCGACUACUGACG hit 65 : 1 55 (fwd) 23.68 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G GAUGAUG +C++U CC + CUGA+ GGUGA GA GA UCCG A + CUGA C 1 AG-GAUGAUGUACUUUcACCCUCACUGAAAGGUGAGGAUGAGUCCG-ACUACUGA-CG 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8024,sp|AF254824.1|AF254824 Pyrococcus abyssi box C/D small nucleolar RNA sR10. ----isReversed: 0 ----hitSequence: GAUGAUGAGUUUUUCCCUCACUCUGAGCCGUGAUGAGGAGCCGAUGCUCUGA hit 66 : 1 52 (fwd) 25.98 bits <<<_____________._______.______._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugac.CUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GAUGAUGAG ++U +CCU+AC CUGAG GUGAUGAGGA C + CUGA 1 ---GAUGAUGAGUUUUuCCCUCACuCUGAGCc-GUGAUGAGGAGCCGA-UGCUCUGA--- 52 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8026,sp|AF254826.1|AF254826 Pyrococcus abyssi box C/D small nucleolar RNA sR12. ----isReversed: 0 ----hitSequence: GGCGAUGAUGAGUGAUGGGCGAACUGAGAAGUGAUGAUGGUAGGUGAUCUCUGAGCC hit 67 : 2 58 (fwd) 32.92 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGCGAUGAUGAG UG GA CUGAG GUGAUGA G + + GAU CUGAGCC 2 GGCGAUGAUGAGUGAUGGGCGAACUGAGAa-GUGAUGAUGGUAGGUGAUCUCUGAGCC 58 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8028,sp|AF254828.1|AF254828 Pyrococcus abyssi box C/D small nucleolar RNA sR14. ----isReversed: 0 ----hitSequence: GAUGAUGAUUAAACCCGUUGCUGAGAGGUGAUGAGGGGACCGACUAGCUGA hit 68 : 1 51 (fwd) 28.69 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 GAUGAUGA +CC CUGAG GGUGAUGAGG CCG UAGCUGA 1 ---GAUGAUGAUUAAACCCGUUGCUGAGAGGUGAUGAGGGGACCGACUAGCUGA--- 51 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8029,sp|AF254829.1|AF254829 Pyrococcus abyssi box C/D small nucleolar RNA sR15. ----isReversed: 0 ----hitSequence: GAUGAUGAGCCUUCCCCUCACCUGAGUGGUGAUGAGCACACCGGUAGGCUGA hit 69 : 1 52 (fwd) 37.97 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 GAUGAUGAGCC+U +CCU+ACCUGAG GGUGAUGAG+AC CCGG+ GCUGA 1 ---GAUGAUGAGCCUUcCCCUCACCUGAGUGGUGAUGAGCACACCGGUAGGCUGA--- 52 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8030,sp|AF254830.1|AF254830 Pyrococcus abyssi box C/D small nucleolar RNA sR16. ----isReversed: 0 ----hitSequence: GAUGAUGAAUCUGGAGCCCCCUGAGUGAUGAUGAGCAGUCUGCGGAGCUGA hit 70 : 1 51 (fwd) 25.35 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 GAUGAUGA+ C++G ++CCUGAG G+UGAUGAG+A UC+G AGCUGA 1 ---GAUGAUGAAUCUGGAGCCCCCUGAGUGAUGAUGAGCAGUCUGCGGAGCUGA--- 51 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8033,sp|AF254833.1|AF254833 Pyrococcus abyssi box C/D small nucleolar RNA sR19. ----isReversed: 0 ----hitSequence: UAUGAUGAACUUUUGCUUUGCUGAUGUGGUGAUGAGCACGCCCUUCGCUGA hit 71 : 1 51 (fwd) 27.93 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 AUGAUGA+C++U CU CUGA G GGUGAUGAG+AC+CC +U GCUGA 1 --U-AUGAUGAACUUUUGCUUUGCUGAUGuGGUGAUGAGCACGCCC-UUCGCUGA--- 51 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8034,sp|AF254834.1|AF254834 Pyrococcus abyssi box C/D small nucleolar RNA sR2. ----isReversed: 0 ----hitSequence: UUUGAUGAUGAUACAGCCAGGACCCUGAUGGGAUGAUGAGUGGUGGGCUUAGCUGAUGU hit 72 : 3 61 (fwd) 30.08 bits <<<____________________.______._________________________>>> 1 ggcGAUGAUGAgcccugCCugac.CUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GAUGAUGA +C ++C GAC CUGA G G+UGAUGAG U+ G +UAGCUGA::: 3 UUUGAUGAUGAUACAGCCAGGACcCUGAUGgGAUGAUGAGUGGUGGGCUUAGCUGAUGU 61 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8035,sp|AF254835.1|AF254835 Pyrococcus abyssi box C/D small nucleolar RNA sR20. ----isReversed: 0 ----hitSequence: GUUGAUGAUGAACUCGCUUGUUGCUGAAGGGUGAUGAAGGGCAUACUGGCUGAUUU hit 73 : 2 57 (fwd) 33.46 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGA+C+C++ CUGA+GGGUGAUGA+G + U GCUGA: : 2 GUUGAUGAUGAACUCGCUUGUUGCUGAAGGGUGAUGAAGGGCAUA-CUGGCUGAUUU 57 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8036,sp|AF254836.1|AF254836 Pyrococcus abyssi box C/D small nucleolar RNA sR3. ----isReversed: 0 ----hitSequence: AAUGAUGAGACCGGCACUAACUGAGUUGUGAUGAGCACUCGGUUGGCUGA hit 74 : 1 50 (fwd) 33.74 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 +AUGAUGAG+CC+GC A CUGAG GUGAUGAG+ACUC G +U GCUGA 1 ---AAUGAUGAGACCGGCACUAACUGAGUu-GUGAUGAGCACUCGG-UUGGCUGA--- 50 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #8039,sp|AF254839.1|AF254839 Pyrococcus abyssi box C/D small nucleolar RNA sR6. ----isReversed: 0 ----hitSequence: AGGAAUGAUGAGAUUUGCUACCACUGAGCAGUGAUGAGCCCUGCCGUUACUGACCU hit 75 : 3 58 (fwd) 47.46 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:+AUGAUGAG+++UGC ++ CUGAG GUGAUGAG++CU+C G U+ CUGA:C: 3 AGGAAUGAUGAGAUUUGCUACCACUGAGCa-GUGAUGAGCCCUGCCG-UUACUGACCU 58 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #38997,sp|AF468960.1|AF468960 Pyrococcus furiosus sR9 RNA, complete sequence. ----isReversed: 0 ----hitSequence: UGGGAUGAUGACCUUUUGCUUUACUGAACACAUGAUGACCACGCCCUUCGCUGACCU hit 76 : 61 117 (fwd) 35.56 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA C++U CU CUGA+ +UGAUGA +AC+CC +U GCUGA:C: 61 UGGGAUGAUGACCUUUUGCUUUACUGAACac-AUGAUGACCACGCCC-UUCGCUGACCU 117 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #49952,sp|AJ430237.1|AFU430237 Archaeoglobus fulgidus u-64 snoRNA gene, clone Afu-64 ----isReversed: 0 ----hitSequence: AGCGAUGAUGAAAGGGCCCCUCUGAACGGUGAUGAGGGUUUUGAGUUCUGAGCU hit 77 : 1 54 (fwd) 40.02 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGAUGA++ ++CC + CUGA+ GGUGAUGAGG +U +G A + CUGAGC: 1 AGCGAUGAUGAAAGGGCCC--CUCUGAACGGUGAUGAGGGUUUUG-AGUUCUGAGCU 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #888,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7). ----isReversed: 0 ----hitSequence: CGGGAUGAGGAAGCCGAGGACACCUGAAGGAUGAUGACUCUUCGCUUCGCCGACCG hit 78 : 55211 55266 (fwd) 26.61 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:GAUGA GA++CC+ G ACCUGA+GG+UGAUGA ++UC +U GC GA:C 55211 CGGGAUGAGGAAGCCGaGGAC-ACCUGAAGGAUGAUGACUCUUCGC-UUCGCCGACCG 55266 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #888,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7). ----isReversed: 0 ----hitSequence: GCCGAUGAUGAGACCGGUACUGGCCGAAGUAUGAUGAGCACUCGGUUAGCUGAGGC hit 79 : 115144 115199 (fwd) 41.32 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:CGAUGAUGAG+CC+G C GA+G +UGAUGAG+ACUC G +UAGCUGAG:C 115144 GCCGAUGAUGAGACCGGUACUGGCCGAAGu-AUGAUGAGCACUCGG-UUAGCUGAGGC 115199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #888,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7). ----isReversed: 0 ----hitSequence: AGGGAUGAUGAGUUUUUCCCUCACUCUGAGGAGUGAUGAGGAGCCGAUGCACUGACCU hit 80 : 215884 215941 (fwd) 41.79 bits <<<_____________._______.______._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugac.CUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGAG ++U +CCU+AC CUGAGG GUGAUGAGGA C + CUGA:C: 215884 AGGGAUGAUGAGUUUUuCCCUCACuCUGAGGa-GUGAUGAGGAGCCGA-UGCACUGACCU 215941 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #888,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7). ----isReversed: 0 ----hitSequence: UGGGUGAUGAGAUGGCGGAUUGCUGAGAGAUGAUGAGGACCUUAGGGGCUGAUUA hit 81 : 230056 230110 (fwd) 27.95 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : G UGAUGAG++ ++ CUGAG G+UGAUGAGGAC + G GCUGA : 230056 UGGG-UGAUGAGAUGGCGGAUUGCUGAGAGAUGAUGAGGACCUUAG-GGGCUGAUUA 230110 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #888,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7). ----isReversed: 0 ----hitSequence: AAAGAUGAUGAACUCGGCAGGUCCUGAUUCGUGAUGAGGAUCUUGAGUGCUGAUUU hit 82 : 243126 243181 (fwd) 45.36 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GAUGAUGA+C+C+GC G CCUGA GUGAUGAGGA+ +G A +GCUGA::: 243126 AAAGAUGAUGAACUCGGCAGGUCCUGAUUc-GUGAUGAGGAUCUUG-AGUGCUGAUUU 243181 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #888,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7). ----isReversed: 0 ----hitSequence: UAAGAUGAUGAAUCUGGAGCCCCCUGAUCGGUGAUGAUCAGUCUGCGGAGCUGAUAA hit 83 : 262665 262721 (fwd) 31.24 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GAUGAUGA+ C++G ++CCUGA GGUGAUGA +A UC+G AGCUGA::: 262665 UAAGAUGAUGAAUCUGGAGCCCCCUGAUCGGUGAUGAUCAGUCUGCGGAGCUGAUAA 262721 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #888,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7). ----isReversed: 1 ----hitSequence: ACCGAUGAAGAGCCUUUUGGGCCCUGAGAGAUGAUGAAAGCCCCCCUAUCUGAGGG hit 84 : 266350 266295 (rev) 33.23 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :CGAUGA GAGCC+U G+CCUGAG G+UGAUGA+ C CC UA CUGAG: 20651 ACCGAUGAAGAGCCUUUUGGGCCCUGAGAGAUGAUGAAAGCCCCC-CUAUCUGAGGG 20706 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #888,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7). ----isReversed: 1 ----hitSequence: UGAGAUGAAGAAAAAGCACCUCCACUGAGUGAUGAUGACACGCCCACGGUCUGAUCA hit 85 : 236067 236011 (rev) 26.87 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGA GA++ + CCU++ CUGAG G+UGAUGA + CC CUGA:C: 50934 UGAGAUGAAGAAAAAGcACCUCCACUGAGUGAUGAUGACACGCCCA-CGGUCUGAUCA 50990 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #888,sp|AP000001.1|AP000001 Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7). ----isReversed: 1 ----hitSequence: GGGGAUGAAGAGCUUUUGCUUUGCUGAGCAGAUGAUGACCACGCCCUUCGCUGACCU hit 86 : 215775 215719 (rev) 37.11 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGA GAGC++U CU CUGAG G+UGAUGA +AC+CC +U GCUGA:C: 71226 GGGGAUGAAGAGCUUUUGCUUUGCUGAGCaGAUGAUGACCACGCCC-UUCGCUGACCU 71282 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #889,sp|AP000002.1|AP000002 Pyrococcus horikoshii OT3 genomic DNA, 287001-544000 nt. position (2/7). ----isReversed: 1 ----hitSequence: GGCGAUGAUGAGCUCCAUCCCUACCUGAGUUGUGAUGAAUGUAGCGCGCUCUGAGCA hit 87 : 248539 248483 (rev) 38.31 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGAUGAGC+C CC ACCUGAG GUGAUGA+ + +CG CUGAGC: 8462 GGCGAUGAUGAGCUCCaUCCCUACCUGAGUu-GUGAUGAAUGUAGCG-CGCUCUGAGCA 8518 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #889,sp|AP000002.1|AP000002 Pyrococcus horikoshii OT3 genomic DNA, 287001-544000 nt. position (2/7). ----isReversed: 1 ----hitSequence: UGGGAUGAUGAAGUUUGCUACCCCUGAAGAAUGAUGAACCCUGCCGUUACUGACCA hit 88 : 133719 133664 (rev) 47.24 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA++++UGC ++CCUGA+G +UGAUGA+++CU+C G U+ CUGA:C: 123282 UGGGAUGAUGAAGUUUGCUACCCCUGAAGa-AUGAUGAACCCUGCCG-UUACUGACCA 123337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #890,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA, 544001-777000 nt. position (3/7). ----isReversed: 0 ----hitSequence: GCGGAUGAUGAAGGCUAAUUUCGGAUUGGUGAAGAGCCCUAUGAGCGCUGACGC hit 89 : 86833 86886 (fwd) 25.33 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGAUGA++ CU C GA GGUGA GAG++CU +G A GCUGA::C 86833 GCGGAUGAUGAAGGCU--AAUUUCGGAUUGGUGAAGAGCCCUAUG-AGCGCUGACGC 86886 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #890,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA, 544001-777000 nt. position (3/7). ----isReversed: 0 ----hitSequence: GGCGAUGAUGUAGGGUGGCGUCCCUGACAUAUGAUGAAGCCUGCGAUGGCUGAGCA hit 90 : 127975 128030 (fwd) 38.35 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGAUG ++ UG C +CCUGA +UGAUGA+G+CU+CG AU GCUGAGC: 127975 GGCGAUGAUGUAGGGUGGCGUCCCUGACAu-AUGAUGAAGCCUGCG-AUGGCUGAGCA 128030 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #890,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA, 544001-777000 nt. position (3/7). ----isReversed: 0 ----hitSequence: UGCGAUGAUGAGAGCGAACUGCACUGAAAAGUGAUGACAGGGCCUUGCUGAGCG hit 91 : 145901 145954 (fwd) 29.11 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GCGAUGAUGAG+ C+ CUG+ CUGA+ GUGAUGA + U+GCUGAGC 145901 UGCGAUGAUGAGAGCGAACUGCACUGAAAa-GUGAUGACAG--GGC-CUUGCUGAGCG 145954 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #890,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA, 544001-777000 nt. position (3/7). ----isReversed: 0 ----hitSequence: GGCGAUGAUGAAGCCUUCCGCACCUGAAUGAUGAGGAGUGGACGGCUUCCUGAGCC hit 92 : 218168 218223 (fwd) 37.31 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGCGAUGAUGA++CCU CC +ACCUGA+ G+UGA GAG C G U+ CUGAGCC 218168 GGCGAUGAUGAAGCCUUCCGCACCUGAAUGAUGAGGAGUGGACGG-CUUCCUGAGCC 218223 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #890,sp|AP000003.1|AP000003 Pyrococcus horikoshii OT3 genomic DNA, 544001-777000 nt. position (3/7). ----isReversed: 1 ----hitSequence: CGGGAUGAUGACUUUGCCGAGUGCUGAGCUGGUGAUGAGUAAACAGUCGUCUGACUU hit 93 : 644 588 (rev) 24.35 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGA ++++C G CUGAG GGUGAUGAG A C G+ CUGA: : 232357 CGGGAUGAUGACUUUGCCGAGUGCUGAGCuGGUGAUGAGUA-AACAGUCGUCUGACUU 232413 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #891,sp|AP000004.1|AP000004 Pyrococcus horikoshii OT3 genomic DNA, 777001-994000 nt. position (4/7). ----isReversed: 0 ----hitSequence: AAAAAUGAUGAGUACGGGGCCACCUGAGCGGUGAUGAGGUUUCUCCCAAGUCUGAUUA hit 94 : 125264 125321 (fwd) 28.66 bits <<<___________________________________________.________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGG.aUaGCUGAgcc 57 :::+AUGAUGAG C+G +ACCUGAG GGUGAUGAGG +UC+ A CUGA::: 125264 AAAAAUGAUGAGUACGGGGCCACCUGAGCGGUGAUGAGGUUUCUCCcAAGUCUGAUUA 125321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #891,sp|AP000004.1|AP000004 Pyrococcus horikoshii OT3 genomic DNA, 777001-994000 nt. position (4/7). ----isReversed: 1 ----hitSequence: AGCGAUGAUGUAGAUUAGCCCCGACUGAGCGGUGAUGAGGCUGGCCCAUCGCUGAGUC hit 95 : 29817 29760 (rev) 42.93 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 CGAUGAUG ++ +U GCC + CUGAG GGUGAUGAGG++++C AU GCUGAG 187184 AGCGAUGAUGUAGAUUaGCCCCGACUGAGCGGUGAUGAGGCUGGCCCAUCGCUGAGUC 187241 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #892,sp|AP000005.1|AP000005 Pyrococcus horikoshii OT3 genomic DNA, 994001-1166000 nt. position (5/7). ----isReversed: 0 ----hitSequence: ACUAAUGAUGAACUACUCCCGGCUGAGGGGUGAUGAACCACCUACCGGCUGAGGU hit 96 : 19073 19127 (fwd) 27.67 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::+AUGAUGA+C+ CC CUGAGGGGUGAUGA+++ C+ GCUGA::: 19073 ACUAAUGAUGAACUACUCCC-GGCUGAGGGGUGAUGAACCACCUA-CCGGCUGAGGU 19127 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #892,sp|AP000005.1|AP000005 Pyrococcus horikoshii OT3 genomic DNA, 994001-1166000 nt. position (5/7). ----isReversed: 0 ----hitSequence: UUUAAUGAUGAAACAGCCAGGACCCUGAUGGGAUGAUGAGUGGUGGGCUUAGCUGAUGU hit 97 : 137166 137224 (fwd) 30.74 bits <<<____________________.______._________________________>>> 1 ggcGAUGAUGAgcccugCCugac.CUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::+AUGAUGA++C ++C GAC CUGA G G+UGAUGAG U+ G +UAGCUGA::: 137166 UUUAAUGAUGAAACAGCCAGGACcCUGAUGgGAUGAUGAGUGGUGGGCUUAGCUGAUGU 137224 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #892,sp|AP000005.1|AP000005 Pyrococcus horikoshii OT3 genomic DNA, 994001-1166000 nt. position (5/7). ----isReversed: 1 ----hitSequence: UGGGAUGAUGAAGUUCGCUAGAACUGAGAGGUGAUGACGCCCAGGGUAUCUGACUU hit 98 : 169749 169694 (rev) 41.66 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGA++++ GC GA CUGAG GGUGAUGA G+C GG UA CUGA: : 2252 UGGGAUGAUGAAGUUCGCUAGAACUGAGAGGUGAUGACGCCCAGGG-UAUCUGACUU 2307 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #892,sp|AP000005.1|AP000005 Pyrococcus horikoshii OT3 genomic DNA, 994001-1166000 nt. position (5/7). ----isReversed: 1 ----hitSequence: GCCGAUGAGGAACGAGCCCGGCCCUGAAGGAUGAUGAAAGCUACCACUACUGAGGU hit 99 : 123042 122987 (rev) 42.16 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::CGAUGA GA+C ++CC G+CCUGA+GG+UGAUGA+ CU C A + CUGAG:: 48959 GCCGAUGAGGAACGAGCCCGGCCCUGAAGGAUGAUGAAAGCUACC-ACUACUGAGGU 49014 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #893,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000 nt. position (6/7). ----isReversed: 0 ----hitSequence: AGAGAUGAUGAGUAAACCCGUUGCUGAGCGGUGAUGAGAGGAUCGACUAGCUGAACA hit 100 : 46025 46081 (fwd) 40.47 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGAG +CC CUGAG GGUGAUGAG CG UAGCUGA:C: 46025 AGAGAUGAUGAGUAAACCCGUUGCUGAGCGGUGAUGAGAGGAUCGACUAGCUGAACA 46081 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #893,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000 nt. position (6/7). ----isReversed: 0 ----hitSequence: UCUGAUGAUGAACCUUCCCCUCACCUGAAAGGUGAUGAGCACACCGGUAGGCUGAGGG hit 101 : 108610 108667 (fwd) 45.46 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::GAUGAUGA+CC+U +CCU+ACCUGA+ GGUGAUGAG+AC CCGG+ GCUGA:: 108610 UCUGAUGAUGAACCUUcCCCUCACCUGAAAGGUGAUGAGCACACCGGUAGGCUGAGGG 108667 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #893,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000 nt. position (6/7). ----isReversed: 0 ----hitSequence: GGCGAUGAUGAGGCCUCGAUUGGCUGAAUCGAUGAUUGAGAGGGACUUGGCUGAGCG hit 102 : 235921 235977 (fwd) 28.75 bits <<<__________________________._____.____________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGA.UGAGGacucCGGaUaGCUGAgcc 57 GCGAUGAUGAG+CCU+ U CUGA+ G+UGA UGAG + +U GCUGAGC 235921 GGCGAUGAUGAGGCCUCGAUUGGCUGAAUcGAUGAuUGAGAGGGA-C-UUGGCUGAGCG 235977 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #893,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000 nt. position (6/7). ----isReversed: 0 ----hitSequence: UGGGAUGAUGAGGGAGAUUUCGGCCGAGUGGUGAGGAGACUCGCAUGGGCUGACCU hit 103 : 312510 312565 (fwd) 26.36 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGAG+ + G CC GAG GGUGA GAG ++ +C + GCUGA:C: 312510 UGGGAUGAUGAGGGAGaUUUCGGCC-GAGUGGUGAGGAGACUCGCA-UGGGCUGACCU 312565 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #893,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000 nt. position (6/7). ----isReversed: 1 ----hitSequence: AGGAAUGAUGACCGGUUUCGGGACUGAACGAUGAUGACACCAGCUAUCGCUGACCU hit 104 : 318845 318790 (rev) 30.53 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:+AUGAUGA C U C G CUGA+ G+UGAUGA +C +C AU GCUGA:C: 156 AGGAAUGAUGACCGGUUUCGGGACUGAACGAUGAUGACACCAGCU-AUCGCUGACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #893,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000 nt. position (6/7). ----isReversed: 1 ----hitSequence: CGGGAUGAGGAGUUCAGCCUAAGCUGAGACAUGAUGAGGGAGUGACGGACUGACCG hit 105 : 162880 162825 (rev) 32.15 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:GAUGA GAG +C GCCU A CUGAG +UGAUGAGG + CUGA:C 156121 CGGGAUGAGGAGUUCAGCCUAAGCUGAGAc-AUGAUGAGGGAGUGA-CGGACUGACCG 156176 ----endhit ----hitSequence: GGCGAUGAUGAGUGAUGGGCGAACUGAAAACAUGAUGAAGGUAGGUGAUCUCUGAGCU hit 106 : 162943 162886 (rev) 31.36 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGAUGAG UG GA CUGA+ +UGAUGA+G + + GAU CUGAGC: 156058 GGCGAUGAUGAGUGAUGGGCGAACUGAAAac-AUGAUGAAGGUAGGUGAUCUCUGAGCU 156115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #893,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000 nt. position (6/7). ----isReversed: 1 ----hitSequence: GGCGAUGAGGAGAUCGGUCUUGUCUGAAGAAUGAUGAAAGUGGUCACCGCUGAGCC hit 107 : 161988 161933 (rev) 41.35 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGCGAUGA GAG++C+G CU CUGA+G +UGAUGA+ ++++ A GCUGAGCC 157013 GGCGAUGAGGAGAUCGGUCUUGUCUGAAGa-AUGAUGAAAGUGGUC-ACCGCUGAGCC 157068 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #893,sp|AP000006.1|AP000006 Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000 nt. position (6/7). ----isReversed: 1 ----hitSequence: UUCAAUGAUGAAAACUCCCUGAUCUGAAAAAUAAAUGAUGAAGACCGGUUCACUGAGAU hit 108 : 124720 124662 (rev) 39.01 bits <<<__________________________....._________________________> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.....GGUGAUGAGGacucCGGaUaGCUGAg 55 ::C+AUGAUGA++ CU+CCUGA CUGA+ +UGAUGA+GA CCGG+U CUGAG 194281 UUCAAUGAUGAAAACUCCCUGAUCUGAAAaauaa-AUGAUGAAGA--CCGGUUCACUGAG 194337 >> 56 cc 57 :: 194338 AU 194339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #894,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA, 1485001-1738505 nt. position (7/7). ----isReversed: 0 ----hitSequence: CAGAGUGAUGAGCCCGCGCAGCGCUGAUAGAUGAUGAAGAUUUUAAGUGCUGACUU hit 109 : 35050 35105 (fwd) 40.40 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::+ UGAUGAGCCC++ C G+ CUGA G+UGAUGA+GA+U + A +GCUGA::: 35050 CAGAGUGAUGAGCCCGCGCAGCGCUGAUAGAUGAUGAAGAUUUUA-AGUGCUGACUU 35105 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #894,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA, 1485001-1738505 nt. position (7/7). ----isReversed: 0 ----hitSequence: UUGGAUGAUGAGCGUUUACCGGUCUGAGCUGUGAUGAUAUCGGCACUGUCUGACUA hit 110 : 247054 247109 (fwd) 31.64 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGAGC +U C G CUGAG GUGAUGA C++C U CUGA: : 247054 UUGGAUGAUGAGCGUUUACCGGUCUGAGCu-GUGAUGAUAUCGGCA-CUGUCUGACUA 247109 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #894,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA, 1485001-1738505 nt. position (7/7). ----isReversed: 1 ----hitSequence: GCCGAUGAGGAUCGUUAGCCACGCUGAGGAUGAUGAUAAGAGGGUUAGCCGAGGC hit 111 : 247053 246999 (rev) 24.75 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:CGAUGA GA C +U GCC + CUGAGG +UGAUGA A + G +UAGC GAG:C 6453 GCCGAUGAGGAUCGUUaGCCA-CGCUGAGG-AUGAUGAUAAGAGGG-UUAGCCGAGGC 6507 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #894,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA, 1485001-1738505 nt. position (7/7). ----isReversed: 1 ----hitSequence: GACGUGAUGAGGAAUCGGGGAGCUGAAGCUAUGAUGAGAUCCGCCAACGCUGAUUU hit 112 : 138025 137970 (rev) 24.50 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :: G UGAUGAG+ U+ GA CUGA+G +UGAUGAG C +C A GCUGA :: 115481 GACG-UGAUGAGGAAUCGGGGAGCUGAAGcu-AUGAUGAGAUCCGCC-AACGCUGAUUU 115536 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #894,sp|AP000007.1|AP000007 Pyrococcus horikoshii OT3 genomic DNA, 1485001-1738505 nt. position (7/7). ----isReversed: 1 ----hitSequence: GCGGAUGAUGAUCCUUGCCCAGCCUGAGGAGUGAUGAAGUCGGUAUUAGCUGACGC hit 113 : 46374 46319 (rev) 48.16 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGAUGA CC+UGCC CCUGAGG GUGAUGA+G C+++ +UAGCUGA::C 207132 GCGGAUGAUGAUCCUUGCCCAGCCUGAGGa-GUGAUGAAGUCGGUA-UUAGCUGACGC 207187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #898,sp|AP000061.1|AP000061 Aeropyrum pernix genomic DNA, section 4/7. ----isReversed: 1 ----hitSequence: UGGGAUGAUGACGCCGUCCCAGCAUGAAGGGUGAUGACCUCACGACGAUCUGACCA hit 114 : 6194 6139 (rev) 29.23 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA +CC+ CC C UGA+GGGUGAUGA + C C A CUGA:C: 262007 UGGGAUGAUGACGCCGUCCCAGCAUGAAGGGUGAUGACCUCACGA-CGAUCUGACCA 262062 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #906,sp|AP000982.1|AP000982 Sulfolobus tokodaii genomic DNA, complete sequence, section:2/10. ----isReversed: 0 ----hitSequence: GGGGAUGACGAGGGGUGGCGAUCUGAAAGCUUGAUGAAUGGCUUGGAAGCUGACCU hit 115 : 8765 8820 (fwd) 23.55 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGA GAG+ UG C A CUGA+ UGAUGA+ +GG AGCUGA:C: 8765 GGGGAUGACGAGGGGUGGCG-AUCUGAAAgc-UUGAUGAAUGGCUUGG-AAGCUGACCU 8820 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #908,sp|AP000984.1|AP000984 Sulfolobus tokodaii genomic DNA, complete sequence, section:4/10. ----isReversed: 1 ----hitSequence: AGUGAUGAUGAGCACCCAACCUCCUGAAUGGUGAGGAAGGCUAGAUUAACUGAUUA hit 116 : 159488 159433 (rev) 30.86 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGAGC C + + CCUGA+ GGUGA GA+G CU +UA CUGA: : 93563 AGUGAUGAUGAGCACCCAACCUCCUGAAUGGUGAGGAAGGCUAGA-UUAACUGAUUA 93618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #909,sp|AP000985.1|AP000985 Sulfolobus tokodaii genomic DNA, complete sequence, section:5/10. ----isReversed: 1 ----hitSequence: GGGGAUGACGAGGGGUGGCUAUCUGAAAGCUUGAUGAAUGGCUUGGAAGCUGACCC hit 117 : 244166 244111 (rev) 25.34 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GG:GAUGA GAG+ UG CU A CUGA+ UGAUGA+ +GG AGCUGA:CC 17885 GGGGAUGACGAGGGGUGGCU-AUCUGAAAgc-UUGAUGAAUGGCUUGG-AAGCUGACCC 17940 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #912,sp|AP000988.1|AP000988 Sulfolobus tokodaii genomic DNA, complete sequence, section:8/10. ----isReversed: 1 ----hitSequence: GGGAAUGAUGAGACCAGGCUCUCUGAAGCUUGAUGAAUGGGUUCACAUCUGACCC hit 118 : 129388 129334 (rev) 30.51 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GG:+AUGAUGAG+CC G CU + CUGA+G UGAUGA+ + + A A CUGA:CC 136663 GGGAAUGAUGAGACCAGGCU-CUCUGAAGc-UUGAUGAAUGGGUUC-ACAUCUGACCC 136717 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #913,sp|AP000989.1|AP000989 Sulfolobus tokodaii genomic DNA, complete sequence, section:9/10. ----isReversed: 0 ----hitSequence: ACAAAUGAUGAUGCCGACAUAGACUGAAGAAUGAGGAGGGGUCGAUUUACUGAUGG hit 119 : 114832 114887 (fwd) 27.95 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::+AUGAUGA +CC+ C U CUGA+G +UGA GAGG UC +U+ CUGA:: 114832 ACAAAUGAUGAUGCCGACAUAGACUGAAGa-AUGAGGAGGGGUCGA-UUUACUGAUGG 114887 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #913,sp|AP000989.1|AP000989 Sulfolobus tokodaii genomic DNA, complete sequence, section:9/10. ----isReversed: 1 ----hitSequence: GAAAAUGAUGAAAGAACCCCUCACUGAAUAUGAUGAACUUGGCCGACGCUGACUC hit 120 : 83575 83521 (rev) 28.90 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G: +AUGAUGA++ +CC + CUGA+ +UGAUGA++ +++C G GCUGA :C 193476 GAAAAUGAUGAAAGAACCCCUCACUGAAU-AUGAUGAACUUGGCCG-ACGCUGACUC 193530 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #913,sp|AP000989.1|AP000989 Sulfolobus tokodaii genomic DNA, complete sequence, section:9/10. ----isReversed: 1 ----hitSequence: AAUGAGGAUGAGAACUCCCCAGACUGAAGUGUGAGGAGUCCUUUAAGUGCUGAUAU hit 121 : 29034 28979 (rev) 28.78 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GA GAUGAG+ CU+CC CUGA+G GUGA GAG +CU + A +GCUGA::: 248017 AAUGAGGAUGAGAACUCCCCAGACUGAAGu-GUGAGGAGUCCUUUA-AGUGCUGAUAU 248072 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45057,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 ----isReversed: 0 ----hitSequence: CGGGAUGAGGAAGCCGAGGACACCUGAAUUGUGAUGAAUCUUCGCUUCGCCGACCG hit 122 : 64245 64300 (fwd) 26.61 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:GAUGA GA++CC+ G ACCUGA+ GUGAUGA+ ++UC +U GC GA:C 64245 CGGGAUGAGGAAGCCGaGGAC-ACCUGAAUu-GUGAUGAAUCUUCGC-UUCGCCGACCG 64300 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45057,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 ----isReversed: 0 ----hitSequence: GCCAAUGAUGAGACCGGCACUAACUGAGUUGUGAUGAGCACUCGGUUGGCUGAGAC hit 123 : 127068 127123 (fwd) 46.57 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G C+AUGAUGAG+CC+GC A CUGAG GUGAUGAG+ACUC G +U GCUGAG C 127068 GCCAAUGAUGAGACCGGCACUAACUGAGUu-GUGAUGAGCACUCGG-UUGGCUGAGAC 127123 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45057,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 ----isReversed: 0 ----hitSequence: AGGGAUGAUGAGUUUUUCCCUCACUCUGAGCCGUGAUGAGGAGCCGAUGCUCUGACCU hit 124 : 230633 230690 (fwd) 40.97 bits <<<_____________._______.______._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugac.CUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGAG ++U +CCU+AC CUGAG GUGAUGAGGA C + CUGA:C: 230633 AGGGAUGAUGAGUUUUuCCCUCACuCUGAGCc-GUGAUGAGGAGCCGA-UGCUCUGACCU 230690 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45057,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 ----isReversed: 0 ----hitSequence: UUGAAUGAUGAGAUGGCGGAUUGCUGAGCUGUGAUGAAGACCUUAGGGUCUGACUU hit 125 : 245976 246031 (fwd) 28.89 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :+AUGAUGAG++ ++ CUGAG GUGAUGA+GAC + G CUGA: : 245976 UUGAAUGAUGAGAUGGCGGAUUGCUGAGCu-GUGAUGAAGACCUUAG-GGUCUGACUU 246031 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45057,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 ----isReversed: 0 ----hitSequence: GAAGAUGAUGAGCUCGGCAGGUCCUGAGGAGUGAUGAGGAUCUUGAGUGCUGAUUC hit 126 : 258067 258122 (fwd) 49.37 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGAUGAGC+C+GC G CCUGAGG GUGAUGAGGA+ +G A +GCUGA::C 258067 GAAGAUGAUGAGCUCGGCAGGUCCUGAGGa-GUGAUGAGGAUCUUG-AGUGCUGAUUC 258122 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45057,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 ----isReversed: 1 ----hitSequence: GUUAUGAUGAACUUUUGCUUUGCUGAUGUGGUGAUGAGCACGCCCUUCGCUGAUAC hit 127 : 230516 230461 (rev) 35.59 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::+ UGAUGA+C++U CU CUGA G GGUGAUGAG+AC+CC +U GCUGA::C 76635 GUUA-UGAUGAACUUUUGCUUUGCUGAUGuGGUGAUGAGCACGCCC-UUCGCUGAUAC 76690 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45057,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 ----isReversed: 1 ----hitSequence: GUUGAUGAUGAACUCGCUUGUUGCUGAAGGGUGAUGAAGGGCAUACUGGCUGAUUU hit 128 : 73088 73033 (rev) 33.46 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGA+C+C++ CUGA+GGGUGAUGA+G + U GCUGA: : 234063 GUUGAUGAUGAACUCGCUUGUUGCUGAAGGGUGAUGAAGGGCAUA-CUGGCUGAUUU 234118 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45057,sp|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 ----isReversed: 1 ----hitSequence: UCCGAUGAUGAUGGAUCAACCGGCUGAGUGGUGAUGAAGUCCGCAUCACCUGAGGC hit 129 : 65278 65223 (rev) 31.85 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :CGAUGAUGA + U+ + CUGAG GGUGAUGA+G C +C + A CUGAG: 241873 UCCGAUGAUGAUGGAUCAACCGGCUGAGUGGUGAUGAAGUCCGCA-UCACCUGAGGC 241928 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45058,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6 ----isReversed: 0 ----hitSequence: UUGGAUGAUGACCGGUUUCGGGACUGAGCUAUGAUGACACCAGCUAUCGCUGACUC hit 130 : 156561 156616 (fwd) 23.62 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GAUGAUGA C U C G CUGAG +UGAUGA +C +C AU GCUGA: 156561 UUGGAUGAUGACCGGUUUCGGGACUGAGCu-AUGAUGACACCAGCU-AUCGCUGACUC 156616 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45058,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6 ----isReversed: 1 ----hitSequence: GGCGAUGAAGAAAAUUUCGCUAGCUGAAAAGUGAUGAGUACCCUCGCAACUGAGCC hit 131 : 236815 236760 (rev) 33.98 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGCGAUGA GA++ +U C A CUGA+ GUGAUGAG AC C+ G A CUGAGCC 56436 GGCGAUGAAGAAAAUUUCGCUAGCUGAAAa-GUGAUGAGUACCCUCG-CAACUGAGCC 56491 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45058,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6 ----isReversed: 1 ----hitSequence: UGGGAUGAUGAAGGAGAUUUCGGCCGAAAGGUGAGGAAACUCGCAUGGGCUGACCU hit 132 : 166136 166081 (rev) 25.35 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA++ + G CC GA+ GGUGA GA+ ++ +C + GCUGA:C: 127115 UGGGAUGAUGAAGGAGaUUUCGGCC-GAAAGGUGAGGAAACUCGCA-UGGGCUGACCU 127170 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45058,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6 ----isReversed: 1 ----hitSequence: UCGAGUGAUGAGCCCGCGCAGCGCUGAGCAAGAUGAUGAAGAUUUUAAGUGCUGACGC hit 133 : 94572 94515 (rev) 38.76 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::+ UGAUGAGCCC++ C G+ CUGAG G+UGAUGA+GA+U + A +GCUGA:: 198679 UCGAGUGAUGAGCCCGCGCAGCGCUGAGCaaGAUGAUGAAGAUUUUA-AGUGCUGACGC 198736 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45058,sp|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6 ----isReversed: 1 ----hitSequence: GCGGAUGACGAGCCUUGCCCAGCCUGAAAGGUGAUGAUGUCGGUAUUAGCUGACGC hit 134 : 11081 11026 (rev) 46.73 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGA GAGCC+UGCC CCUGA+ GGUGAUGA G C+++ +UAGCUGA::C 282170 GCGGAUGACGAGCCUUGCCCAGCCUGAAAGGUGAUGAUGUCGGUA-UUAGCUGACGC 282225 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45059,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6 ----isReversed: 0 ----hitSequence: CGGGAUGAGGAGUUCAGCCUAGGCUGAGGCGUGAUGAGGGAGUGACGGACUGACCG hit 135 : 31285 31340 (fwd) 32.74 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:GAUGA GAG +C GCCU CUGAGG GUGAUGAGG + CUGA:C 31285 CGGGAUGAGGAGUUCAGCCUAGGCUGAGGc-GUGAUGAGGGAGUGA-CGGACUGACCG 31340 ----endhit ----hitSequence: GGCGAUGAUGAGUGAUGGGCGAACUGAGAAGUGAUGAUGGUAGGUGAUCUCUGAGCC hit 136 : 31219 31275 (fwd) 32.92 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGCGAUGAUGAG UG GA CUGAG GUGAUGA G + + GAU CUGAGCC 31219 GGCGAUGAUGAGUGAUGGGCGAACUGAGAa-GUGAUGAUGGUAGGUGAUCUCUGAGCC 31275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45059,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6 ----isReversed: 0 ----hitSequence: GGCAAUGAUGAAAUCGGUCUUGUCCGAGGAGUGAUGAUAGUGGUCACCGCUGAGCC hit 137 : 36404 36459 (fwd) 35.87 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGC+AUGAUGA+++C+G CU C GAGG GUGAUGA ++++ A GCUGAGCC 36404 GGCAAUGAUGAAAUCGGUCUUGUCCGAGGa-GUGAUGAUAGUGGUC-ACCGCUGAGCC 36459 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45059,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6 ----isReversed: 0 ----hitSequence: UGCGAUGAUGAUAACUCCCUGACCUGAAAGGUGAUGAGGACCGGUUCACUGAGCU hit 138 : 75109 75163 (fwd) 51.53 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGAUGA + CU+CCUGACCUGA+ GGUGAUGAGGA CCGG+U CUGAGC: 75109 UGCGAUGAUGAUAACUCCCUGACCUGAAAGGUGAUGAGGA--CCGGUUCACUGAGCU 75163 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45059,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6 ----isReversed: 1 ----hitSequence: AGUGAUGAUGAUUAAACCCGUUGCUGAGAGGUGAUGAGGGGACCGACUAGCUGAACA hit 139 : 162300 162244 (rev) 40.55 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA +CC CUGAG GGUGAUGAGG CCG UAGCUGA:C: 144821 AGUGAUGAUGAUUAAACCCGUUGCUGAGAGGUGAUGAGGGGACCGACUAGCUGAACA 144877 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45059,sp|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6 ----isReversed: 1 ----hitSequence: AUAGAUGAUGAGCCUUCCCCUCACCUGAGUGGUGAUGAGCACACCGGUAGGCUGAGGG hit 140 : 93577 93520 (rev) 44.74 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : GAUGAUGAGCC+U +CCU+ACCUGAG GGUGAUGAG+AC CCGG+ GCUGA : 213544 AUAGAUGAUGAGCCUUcCCCUCACCUGAGUGGUGAUGAGCACACCGGUAGGCUGAGGG 213601 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45060,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6 ----isReversed: 0 ----hitSequence: UCCGAUGAGGAGCGAGCCCGGCCCUGAGCGAUGAUGAGAGCUACCACUACUGAGGU hit 141 : 52940 52995 (fwd) 42.34 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::CGAUGA GAGC ++CC G+CCUGAG G+UGAUGAG CU C A + CUGAG:: 52940 UCCGAUGAGGAGCGAGCCCGGCCCUGAGCGAUGAUGAGAGCUACC-ACUACUGAGGU 52995 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45060,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6 ----isReversed: 0 ----hitSequence: UUUGAUGAUGAUACAGCCAGGACCCUGAUGGGAUGAUGAGUGGUGGGCUUAGCUGAUGU hit 142 : 187575 187633 (fwd) 30.08 bits <<<____________________.______._________________________>>> 1 ggcGAUGAUGAgcccugCCugac.CUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GAUGAUGA +C ++C GAC CUGA G G+UGAUGAG U+ G +UAGCUGA::: 187575 UUUGAUGAUGAUACAGCCAGGACcCUGAUGgGAUGAUGAGUGGUGGGCUUAGCUGAUGU 187633 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45060,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6 ----isReversed: 1 ----hitSequence: AGCGAUGAUGAACUACUCCCGGCUGAGCUGUGAUGAACCACCUACCGGCUGAGGU hit 143 : 162377 162323 (rev) 26.45 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : CGAUGAUGA+C+ CC CUGAG GUGAUGA+++ C+ GCUGAG : 124754 AGCGAUGAUGAACUACUCCC-GGCUGAGCu-GUGAUGAACCACCUA-CCGGCUGAGGU 124808 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45060,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6 ----isReversed: 1 ----hitSequence: GGGAGUGAUGAGGUUCGCUAGAGCUGAAGGAUUGAUGAUGAGACCCAGGGUAUCUGACCG hit 144 : 47940 47881 (rev) 33.83 bits <<<__________________________...._________________________>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg....GGUGAUGAGGacucCGGaUaGCUGAgc 56 G:+ UGAUGAG+++ GC GA CUGA+G G+UGAUGAG +C GG UA CUGA:C 239191 GGGAGUGAUGAGGUUCGCUAGAGCUGAAGgauuGAUGAUGAGACCCAGGG-UAUCUGACC 239249 > 57 c 57 239250 G 239250 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45060,sp|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6 ----isReversed: 1 ----hitSequence: UAAAAUGAUGAGUACGGGGCCACCUGAAUGGUGAUGAGGUUUCUCCCAAGGCUGAUUA hit 145 : 41891 41834 (rev) 29.38 bits <<<___________________________________________.________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGG.aUaGCUGAgcc 57 :::+AUGAUGAG C+G +ACCUGA+ GGUGAUGAGG +UC+ A GCUGA::: 245240 UAAAAUGAUGAGUACGGGGCCACCUGAAUGGUGAUGAGGUUUCUCCcAAGGCUGAUUA 245297 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45061,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6 ----isReversed: 0 ----hitSequence: AGCGAUGAUGUAGAUUAGCCCCGACUGAGUUGUGAUGAGGCUGGCCCAUCGCUGAGCU hit 146 : 1331 1388 (fwd) 45.28 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGAUG ++ +U GCC + CUGAG GUGAUGAGG++++C AU GCUGAGC: 1331 AGCGAUGAUGUAGAUUaGCCCCGACUGAGUu-GUGAUGAGGCUGGCCCAUCGCUGAGCU 1388 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45061,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6 ----isReversed: 0 ----hitSequence: AGGGAUGAUGAGGCCUACCUCGCUGAGCUGUGAUGAGUGGGUGAGCUGGCUGACAU hit 147 : 86077 86132 (fwd) 33.14 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGAG+CCU CCU + CUGAG GUGAUGAG + G U GCUGA: : 86077 AGGGAUGAUGAGGCCUACCU-CGCUGAGCu-GUGAUGAGUGGGUGAGCUGGCUGACAU 86132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45061,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6 ----isReversed: 0 ----hitSequence: GGCGAUGAUGAGCUCCAUCCCUAUCUGAGUUGUGAUGACUGUAGCGCGCUCUGAGCU hit 148 : 209213 209269 (fwd) 35.13 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :GCGAUGAUGAGC+C CC A CUGAG GUGAUGA + +CG CUGAGC: 209213 GGCGAUGAUGAGCUCCaUCCCUAUCUGAGUu-GUGAUGACUGUAGCG-CGCUCUGAGCU 209269 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45061,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6 ----isReversed: 1 ----hitSequence: CUCGAGGAUGAUCCCACCCUUGGCUGAAGUGUGAUGAUGUCUCGUGGUUCUGAGAG hit 149 : 274259 274204 (rev) 27.34 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :CGA GAUGA CCC +CCU CUGA+G GUGAUGA G CUC G + CUGAG: 31342 CUCGAGGAUGAUCCCACCCUUGGCUGAAGu-GUGAUGAUGUCUCGUG-GUUCUGAGAG 31397 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45061,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6 ----isReversed: 1 ----hitSequence: GCGGAUGAUGAGCUAGUAAUUCUGAGCGAUGAAGAGCCCUAUGAGCGCUGACGC hit 150 : 97964 97911 (rev) 31.00 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGAUGAGC+ + U CUGAG G+UGA GAG++CU +G A GCUGA::C 207637 GCGGAUGAUGAGCUAGUAAU--UCUGAGCGAUGAAGAGCCCUAUG-AGCGCUGACGC 207690 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45061,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6 ----isReversed: 1 ----hitSequence: GGCGAUGAGGAAGGGUGGCGUCCCUGAGCUCUGUGCCGUGAUGAUGCCUGCGAUGGCUGAGCA hit 151 : 65743 65681 (rev) 29.35 bits <<<__________________________........_______________________ 1 ggcGAUGAUGAgcccugCCugacCUGAgg........GGUGAUGAGGacucCGGaUaGCU 52 :GCGAUGA GA++ UG C +CCUGAG GUGAUGA G+CU+CG AU GCU 239858 GGCGAUGAGGAAGGGUGGCGUCCCUGAGCucugugcc-GUGAUGAUGCCUGCG-AUGGCU 239915 __>>> 53 GAgcc 57 GAGC: 239916 GAGCA 239920 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45061,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6 ----isReversed: 1 ----hitSequence: UGCGAUGAUGAAAGCGAACUGCACUGAAAAGUGAUGAGAGGGCCUCGCUGAGCG hit 152 : 46690 46637 (rev) 32.11 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GCGAUGAUGA++ C+ CUG+ CUGA+ GUGAUGAG + U GCUGAGC 258911 UGCGAUGAUGAAAGCGAACUGCACUGAAAa-GUGAUGAGAG--GGC-CUCGCUGAGCG 258964 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45061,sp|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6 ----isReversed: 1 ----hitSequence: GGCAAUGAUGAAGCCUUCCGCACCUGAACGGUGAGGAGUGGACGGCUUCCUGAGCC hit 153 : 14879 14824 (rev) 37.13 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGC+AUGAUGA++CCU CC +ACCUGA+ GGUGA GAG C G U+ CUGAGCC 290722 GGCAAUGAUGAAGCCUUCCGCACCUGAACGGUGAGGAGUGGACGG-CUUCCUGAGCC 290777 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45062,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6 ----isReversed: 0 ----hitSequence: AGGAAUGAUGAGAUUUGCUACCACUGAGCAGUGAUGAGCCCUGCCGUUACUGACCU hit 154 : 36389 36444 (fwd) 47.46 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:+AUGAUGAG+++UGC ++ CUGAG GUGAUGAG++CU+C G U+ CUGA:C: 36389 AGGAAUGAUGAGAUUUGCUACCACUGAGCa-GUGAUGAGCCCUGCCG-UUACUGACCU 36444 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45062,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6 ----isReversed: 0 ----hitSequence: UGGGAUGAUGAAACUCCUUUCGGGCACUGAUCCGUGAUGAAGGCCCUCCUAUCUGAGCA hit 155 : 153183 153241 (fwd) 26.93 bits <<<_____________.._______.______._________________________>> 1 ggcGAUGAUGAgcccu..gCCugac.CUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgc 56 :G GAUGAUGA++C+ C G C CUGA GUGAUGA+G C C+ UA CUGA C 153183 UGGGAUGAUGAAACUCcuUUCGGGCaCUGAUCc-GUGAUGAAGGCCCUC-CUAUCUGAGC 153240 > 57 c 57 : 153241 A 153241 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45062,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6 ----isReversed: 0 ----hitSequence: AUAGAUGAUGAGCGCCAUCGAUGCUGAGGAGUGAUGACCGGAUUCCUGGCUGAUCU hit 156 : 160715 160770 (fwd) 24.30 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGAGC C C CUGAGG GUGAUGA + + U GCUGA: : 160715 AUAGAUGAUGAGCGCCAUCGAUGCUGAGGa-GUGAUGACCGGAUUC-CUGGCUGAUCU 160770 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45062,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6 ----isReversed: 0 ----hitSequence: UGGGAUGAUGAGCGUUUACCGGUCUGAGCUGUGAUGACAUCGGCACUGUCUGACUA hit 157 : 255930 255985 (fwd) 32.96 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 : :GAUGAUGAGC +U C G CUGAG GUGAUGA C++C U CUGA: : 255930 UGGGAUGAUGAGCGUUUACCGGUCUGAGCu-GUGAUGACAUCGGCA-CUGUCUGACUA 255985 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #45062,sp|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6 ----isReversed: 1 ----hitSequence: AAAGAUGAUGAAUCUGGAGCCCCCUGAGUGAUGAUGAGCAGUCUGCGGAGCUGAUAU hit 158 : 156858 156802 (rev) 36.55 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 :::GAUGAUGA+ C++G ++CCUGAG G+UGAUGAG+A UC+G AGCUGA::: 108261 AAAGAUGAUGAAUCUGGAGCCCCCUGAGUGAUGAUGAGCAGUCUGCGGAGCUGAUAU 108317 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #47414,sp|D88253.1|D88253 Thermococcus litoralis DNA for 4-alpha-glucanotransferase, complete cds. ----isReversed: 1 ----hitSequence: ACCGAUGAUGAAGAACCUUUCGGGCCCUGAUGGAUGAUGGAGGCCUCCCUAUCUGAGGU hit 159 : 2347 2289 (rev) 27.58 bits <<<________...___________________________________________>>> 1 ggcGAUGAUGA...gcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 ::CGAUGAUGA +CC+U C G+CCUGA GG+UGAUG +G C C UA CUGAG:: 181 ACCGAUGAUGAagaACCUUUCGGGCCCUGAUGGAUGAUGGAGGCCUCC-CUAUCUGAGGU 239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #13453,sp|U67460.1|MJU67460 Methanococcus jannaschii section 2 of 150 of the complete genome. ----isReversed: 1 ----hitSequence: GCGGAUGAUGAACGGAGUAGCUGCUGAGCUAUGAUGAUUGAUGGGCGAACUGACGC hit 160 : 12568 12513 (rev) 24.60 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGAUGA+C G + CUGAG +UGAUGA U+ G A CUGA::C 22 GCGGAUGAUGAACGGAGUAGCUGCUGAGCu-AUGAUGAUUGAUGGG-CGAACUGACGC 77 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #13454,sp|U67461.1|MJU67461 Methanococcus jannaschii section 3 of 150 of the complete genome. ----isReversed: 1 ----hitSequence: GCAGAUGAUGACGUUUAUCCCCGUCUGAGUUAUGAUGAGUAGCAAGCCGGCUGAUGC hit 161 : 7053 6997 (rev) 30.78 bits <<<_____________._____________._________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G::GAUGAUGA +++U CC + CUGAG +UGAUGAG A G GCUGA::C 3916 GCAGAUGAUGACGUUUaUCCCCGUCUGAGUu-AUGAUGAGUAGCA-AGCCGGCUGAUGC 3972 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #13455,sp|U67462.1|MJU67462 Methanococcus jannaschii section 4 of 150 of the complete genome. ----isReversed: 1 ----hitSequence: GGCGAUGAUGACAAUUUCGCUAUCUGAUUCUGUGAUGACUACUCCCGCAGCUGAGCC hit 162 : 1952 1896 (rev) 31.21 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGCGAUGAUGA + +U C A CUGA GUGAUGA ACUCC G AGCUGAGCC 13333 GGCGAUGAUGACAAUUUCGCUAUCUGAUUcu-GUGAUGACUACUCCCG-CAGCUGAGCC 13389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #13475,sp|U67482.1|MJU67482 Methanococcus jannaschii section 24 of 150 of the complete genome. ----isReversed: 0 ----hitSequence: GCCAAUGAUGACGAUUGGCUUUGCUGAGUCUGUGAUGAACCGUAUGAGCACUGAGGC hit 163 : 8617 8673 (fwd) 34.85 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:C+AUGAUGA + +UG CU CUGAG GUGAUGA+++ U +G A CUGAG:C 8617 GCCAAUGAUGACGAUUGGCUUUGCUGAGUcu-GUGAUGAACCGUAUG-AGCACUGAGGC 8673 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #13495,sp|U67502.1|MJU67502 Methanococcus jannaschii section 44 of 150 of the complete genome. ----isReversed: 1 ----hitSequence: GGCAAUGAUGAAAAGAGGGUUAGCUGAACUGUGAUGAUACUUACCCGAACUGAGCC hit 164 : 5584 5529 (rev) 29.96 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGC+AUGAUGA++ G U A CUGA+ GUGAUGA ++U C A CUGAGCC 4884 GGCAAUGAUGAAAAGAGGGUUAGCUGAACu-GUGAUGAUACUUACC-CGAACUGAGCC 4939 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #13518,sp|U67525.1|MJU67525 Methanococcus jannaschii section 67 of 150 of the complete genome. ----isReversed: 0 ----hitSequence: CGCGAUGAUGAGUGCCGACUUCACUGAACUGUGAUGAAACCUGGGACAGCUGAGCG hit 165 : 7289 7344 (fwd) 39.04 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GCGAUGAUGAG C G CU + CUGA+ GUGAUGA+ +CU+ G A AGCUGAGC 7289 CGCGAUGAUGAGUGCCGACUUCACUGAACu-GUGAUGAAACCUGGG-ACAGCUGAGCG 7344 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #13540,sp|U67547.1|MJU67547 Methanococcus jannaschii section 89 of 150 of the complete genome. ----isReversed: 0 ----hitSequence: GGGGAUGAUGAUACAUCGAUGUGCUGAAUAUUGAUGAUGAACGCGCCCUUCUCUGACCU hit 166 : 6820 6878 (fwd) 35.13 bits <<<__________________________..._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg...GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGA +C U+ UG CUGA+ G+UGAUGA++ C+CC +U CUGA:C: 6820 GGGGAUGAUGAUACAUCGAUGUGCUGAAUauuGAUGAUGAACGCGCCC-UUCUCUGACCU 6878 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #23061,sp|X59857.1|PWEF1A P.woesei EF-1alpha, S10 & tRNA genes for elongation factor-1alpha, ribosomal protein S10 and tRNA-Ser ----isReversed: 0 ----hitSequence: GGCUAUGAGGAAAUCGGUCUUAGCUGAGCUUAUGAUGAAAGUGGUCACCGCCGAGCC hit 167 : 407 463 (fwd) 28.80 bits <<<__________________________.._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg..GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GGC AUGA GA+++C+G CU A CUGAG +UGAUGA+ ++++ A GC GAGCC 407 GGCUAUGAGGAAAUCGGUCUUAGCUGAGCuu-AUGAUGAAAGUGGUC-ACCGCCGAGCC 463 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #23090,sp|L22346.1|PYWAMYA Pyrococcus furiosus alpha-amylase (amyA) gene, complete cds. ----isReversed: 1 ----hitSequence: GCCGAUGAGGGAGUCUUUCGGGCCCUGAUUGGUGAUGAGGGCCUCCCUAUCCCGAGGC hit 168 : 2711 2654 (rev) 24.26 bits <<<_____________.______________________________________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:CGAUGA G +++CU C G+CCUGA GGUGAUGAGG C C + + C GAG:C 429 GCCGAUGAGGGAGUCUuUCGGGCCCUGAUUGGUGAUGAGGGCCUCCCUAUCCCGAGGC 486 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #30451,sp|X60821.1|SMTHR S.marcescens thrA1A2BC genes for aspartokinase, homoserine dehydrogenase, homoserine kinase and threonine synthase ----isReversed: 1 ----hitSequence: GCCGAUGACGAACACUUCGAUCACCUGAUCGGUGUUGAACAGCAUCUGGUGGCUGACGC hit 169 : 2368 2310 (rev) 24.40 bits <<<_____________._________________________.._____________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGac..ucCGGaUaGCUGAgcc 57 G: GAUGA GA+C CU + U+ACCUGA GGUG UGA++A UC+GG U GCUGA :C 3823 GCCGAUGACGAACACUuCGAUCACCUGAUCGGUGUUGAACAGcaUCUGG-UGGCUGACGC 3881 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #30452,sp|D10385.1|SMTHR1 Serratia marcescens thrA1-1/A2-1 gene for aspartokinase-homoserine dehydrogenase, complete cds. ----isReversed: 1 ----hitSequence: GCCGAUGACGAACACUUCGAUCACCUGAUCGGUGUUGAACAGCAUCUGGUGGCUGACGC hit 170 : 1633 1575 (rev) 24.40 bits <<<_____________._________________________.._____________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGac..ucCGGaUaGCUGAgcc 57 G: GAUGA GA+C CU + U+ACCUGA GGUG UGA++A UC+GG U GCUGA :C 1122 GCCGAUGACGAACACUuCGAUCACCUGAUCGGUGUUGAACAGcaUCUGG-UGGCUGACGC 1180 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #30453,sp|D10386.1|SMTHR2 Serratia marcescens thrA1+/A2-2 gene for aspartokinase-homoserine dehydrogenase, complete cds. ----isReversed: 1 ----hitSequence: GCCGAUGACGAACACUUCGAUCACCUGAUCGGUGUUGAACAGCAUCUGGUGGCUGACGC hit 171 : 1633 1575 (rev) 24.40 bits <<<_____________._________________________.._____________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGac..ucCGGaUaGCUGAgcc 57 G: GAUGA GA+C CU + U+ACCUGA GGUG UGA++A UC+GG U GCUGA :C 1155 GCCGAUGACGAACACUuCGAUCACCUGAUCGGUGUUGAACAGcaUCUGG-UGGCUGACGC 1213 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #30454,sp|D10387.1|SMTHR3 Serratia marcescens thrA1-5/A2-5/BC gene for aspartokinase-homoserine dehydrogenase, complete cds. ----isReversed: 1 ----hitSequence: GCCGAUGACGAACACUUCGAUCACCUGAUCGGUGUUGAACAGCAUCUGGUGGCUGACGC hit 172 : 2368 2310 (rev) 24.40 bits <<<_____________._________________________.._____________>>> 1 ggcGAUGAUGAgcccu.gCCugacCUGAggGGUGAUGAGGac..ucCGGaUaGCUGAgcc 57 G: GAUGA GA+C CU + U+ACCUGA GGUG UGA++A UC+GG U GCUGA :C 3823 GCCGAUGACGAACACUuCGAUCACCUGAUCGGUGUUGAACAGcaUCUGG-UGGCUGACGC 3881 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #33956,sp|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA fragment, strain P2 ----isReversed: 0 ----hitSequence: GGGAAUGAUGAGCCACGCCAGAACUGAGCCAGGAUGAACGGCUUGGGAGCUGACCC hit 173 : 60111 60166 (fwd) 39.44 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GG:+AUGAUGAGCC GCC GA CUGAG + GAUGA++ +GG AGCUGA:CC 60111 GGGAAUGAUGAGCCACGCCAGAACUGAGCc-AGGAUGAACGGCUUGG-GAGCUGACCC 60166 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #33956,sp|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA fragment, strain P2 ----isReversed: 1 ----hitSequence: GGAAAUGAUGAGGGUUCCAGAGCUGAAGCGUGAUGAAUGGUUGACACGCUGACCC hit 174 : 78507 78453 (rev) 29.31 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 GG +AUGAUGAG+ +U CC GA CUGA+G GUGAUGA+ U GCUGA CC 202738 GGAAAUGAUGAGGGUU-CCAGAGCUGAAGc-GUGAUGAAUGGUUGA-CACGCUGACCC 202792 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #35347,sp|AJ010405.1|SUL010405 Sulfolobus sp. NOB8H2 conjugative plasmid pNOB8 ----isReversed: 1 ----hitSequence: GGGGAUGAUGAGCACGACACGAGUUGACCUAUGAUAGGACGCCGUUGCUCUGACCU hit 175 : 23236 23181 (rev) 23.98 bits <<<__________________________._________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAgg.GGUGAUGAGGacucCGGaUaGCUGAgcc 57 :G:GAUGAUGAGC C+ C GA UGA +UGAU AGGAC+CCG + CUGA:C: 17994 GGGGAUGAUGAGCACGACACGAGUUGACCu-AUGAU-AGGACGCCGUUGCUCUGACCU 18049 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #36522,sp|U95207.1|TSU95207 Thermococcus sp. AN1 signal recognition particle receptor alpha subunit (srp alpha) gene, complete cds. ----isReversed: 0 ----hitSequence: GCCGAUGAUGAGUGGCUUCGGGUCCGAGGGGUGAGGACACCAGCUAUCGCUGAGGC hit 176 : 9 64 (fwd) 23.90 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 G:CGAUGAUGAG C G C GAGGGGUGA GA +C +C AU GCUGAG:C 9 GCCGAUGAUGAGUGGCUUCGGGUCCGAGGGGUGAGGACACCAGCU-AUCGCUGAGGC 64 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4215,sp|AC012601.7|AC012601 Homo sapiens chromosome 5 clone CTC-288O10, complete sequence. ----isReversed: 0 ----hitSequence: UGAGAUGAUGUCUUUUGCAUCAUCUGAGUGUGAUGAUGUUUUAGUUUGCUGAGUA hit 177 : 87715 87769 (fwd) 23.98 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : GAUGAUG ++UGC U+A CUGAG GUGAUGA G +U G+U+GCUGA : 87715 UGAGAUGAUGUCUUUUGCAUCAUCUGAGU-GUGAUGAUGUUUU-AGUUUGCUGAGUA 87769 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3722,sp|AL450445.6|AL450445 Human DNA sequence from clone RP11-411G9 on chromosome 13 ----isReversed: 1 ----hitSequence: UGAGAUGAUGUCUUUUGCAUCAUCUGAGUGUGAUGAUGUUUUAGUUUGCUGAGUA hit 178 : 43204 43150 (rev) 23.98 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 : GAUGAUG ++UGC U+A CUGAG GUGAUGA G +U G+U+GCUGA : 98664 UGAGAUGAUGUCUUUUGCAUCAUCUGAGU-GUGAUGAUGUUUU-AGUUUGCUGAGUA 98718 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #3533,sp|AL121914.31|HSJ1167H4 Human DNA sequence from clone RP5-1167H4 on chromosome 20 Contains ESTs, STSs, GSSs and two CpG islands. Contains a novel gene, ----isReversed: 1 ----hitSequence: GGAGGUUAUGAAGUUGGCCUCUGAGUGGUGAUGUGUAUUCUGGAGGCUGAGCC hit 179 : 118166 118114 (rev) 23.97 bits <<<___________________________________________________>>> 1 ggcGAUGAUGAgcccugCCugacCUGAggGGUGAUGAGGacucCGGaUaGCUGAgcc 57 GG G U AUGA+++++GCCU CUGAG GGUGAUG G A+UC+GG GCUGA CC 17528 GGAGGUUAUGAAGUUGGCCU---CUGAGUGGUGAUGUGUAUUCUGG-AGGCUGAGCC 17580 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=2.49359e-06, 2d-fracLetsThru=1.30639e-06). Filter report: done 1.65905e+10 nucs (frac lets thru so far=2.49359e-06, 2d-fracLetsThru=1.30639e-06). done 1.65905e+10 nucs (frac lets thru so far=2.49359e-06, 2d-fracLetsThru=1.30639e-06). CPU time: 237637.06u 254.94s 66:04:52.00 Elapsed: 74:42:01