Params: ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00093.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00093_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: bicycle.cs.washington.edu pid: 17995 ----cmFile: Rfam/cm/RF00093.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #50488,sp|X96517.1|CAEF1BGEN C.albicans EF-1B gene ----isReversed: 0 ----hitSequence: UUAAAAUGAUGAUCUCAAUCUUUGGUCCGUGUUUAUGAGGUGGCCUCAAGACCCACCGCAUGAGUGACAAAGAAGAUUUAAAUCUUAUAUCUGACAAU hit 0 : 284 381 (fwd) 38.46 bits <<<<___________________________________...........__________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA...........AaCcCaUGAU 49 +:::AAUGAUGA+CUC+A+ U++ GGUCCGUGUUU UGA +ACCCA 284 UUAAAAUGAUGAUCUCAAUCUUU-GGUCCGUGUUUAUGAgguggccucaaGACCCACCGC 342 _______.___................._______>>>> 50 AUgAgUG.GAA.................gUUCUGAuuca 70 AUGAGUG +AA UCUGA:::+ 343 AUGAGUGaCAAagaagauuuaaaucuuaUAUCUGACAAU 381 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #68394,sp|U12981.1|SC12981 Saccharomyces cerevisiae U18 snRNA, complete sequence. ----isReversed: 0 ----hitSequence: GUGAAUGAUGAAUUUAAUUCUUUGGUCCGUGUUUAUGAUGGGAAGUAAGACCCCCGAUAUGAGUGACAAAAGAGAUGUGGUUGACUAU hit 1 : 1 88 (fwd) 38.62 bits <<<<___________________________________..........___________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA..........AaCcCaUGAUA 50 :::AAUGAUGA+ U +A+U ++UGGUCCGUGUUU UGA +ACCC GAUA 1 -GUGAAUGAUGAAUUUAAUUCUUUGGUCCGUGUUUAUGAugggaaguaaGACCCCCGAUA 59 ______.___........_______>>>> 51 UgAgUG.GAA........gUUCUGAuuca 70 UGAGUG +AA UGA:::+ 60 UGAGUGaCAAaagagaugUGGUUGACUAU 88 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #69350,sp|L22015.1|SCCHROMI Saccharomyces cerevisiae chromosome I centromere and right arm sequence. ----isReversed: 0 ----hitSequence: UGUGAAUGAUGAAUUUAAUUCUUUGGUCCGUGUUUAUGAUGGGAAGUAAGACCCCCGAUAUGAGUGACAAAAGAGAUGUGGUUGACUAU hit 2 : 8813 8901 (fwd) 41.95 bits <<<<___________________________________..........___________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA..........AaCcCaUGAUA 50 +:::AAUGAUGA+ U +A+U ++UGGUCCGUGUUU UGA +ACCC GAUA 8813 UGUGAAUGAUGAAUUUAAUUCUUUGGUCCGUGUUUAUGAugggaaguaaGACCCCCGAUA 8872 ______.___........_______>>>> 51 UgAgUG.GAA........gUUCUGAuuca 70 UGAGUG +AA UGA:::+ 8873 UGAGUGaCAAaagagaugUGGUUGACUAU 8901 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #69779,sp|D14080.1|SCEFB1DNA Yeast DNA for elongation factor-1 beta, complete cds. ----isReversed: 0 ----hitSequence: UGUGAAUGAUGAAUUUAAUUCUUUGGUCCGUGUUUAUGAUGGGAAGUAAGACCCCCGAUAUGAGUGACAAAAGAGAUGUGGUUGACUAU hit 3 : 373 461 (fwd) 41.95 bits <<<<___________________________________..........___________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA..........AaCcCaUGAUA 50 +:::AAUGAUGA+ U +A+U ++UGGUCCGUGUUU UGA +ACCC GAUA 373 UGUGAAUGAUGAAUUUAAUUCUUUGGUCCGUGUUUAUGAugggaaguaaGACCCCCGAUA 432 ______.___........_______>>>> 51 UgAgUG.GAA........gUUCUGAuuca 70 UGAGUG +AA UGA:::+ 433 UGAGUGaCAAaagagaugUGGUUGACUAU 461 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #76728,sp|AL031534.1|SPBC4F6 S.pombe chromosome II cosmid c4F6. ----isReversed: 1 ----hitSequence: AAGCUAUGAUGACCAAAAUUGGUCCGUGUUACUGAGCGGGAUUAAGACCCCAGCAAACGAAGAGAAACCCAAUUUUUAAUUCUGAUUUU hit 4 : 35527 35439 (rev) 31.97 bits <<<<___________________________________..........___________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA..........AaCcCaUGAUA 50 ::G:+AUGAUGA C+ +A+U GGUCCGUGUU CUGA +ACCC G A 9252 AAGCUAUGAUGACCAAAAUU----GGUCCGUGUUACUGAgcgggauuaaGACCCCAGCAA 9307 ______.___............_______>>>> 51 UgAgUG.GAA............gUUCUGAuuca 70 + G GAA UUCUGA:U:: 9308 ACGAAGaGAAacccaauuuuuaAUUCUGAUUUU 9340 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #77650,sp|X61926.1|SPSWI10 S.pombe swi10 gene ----isReversed: 0 ----hitSequence: AAGCUAUGAUGACCAAAAUUGGUCCGUGUUACUGAGCGGAUUAAGACCCCAGCAAACGAAGAGAAACCCAAUUUUUAAUUCUGAUUUU hit 5 : 688 775 (fwd) 32.28 bits <<<<___________________________________.........____________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA.........AaCcCaUGAUAU 51 ::G:+AUGAUGA C+ +A+U GGUCCGUGUU CUGA +ACCC G A+ 688 AAGCUAUGAUGACCAAAAUU----GGUCCGUGUUACUGAgcggauuaaGACCCCAGCAAA 743 _____.___............_______>>>> 52 gAgUG.GAA............gUUCUGAuuca 70 G GAA UUCUGA:U:: 744 CGAAGaGAAacccaauuuuuaAUUCUGAUUUU 775 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6735,sp|AC093546.2|AC093546 Drosophila melanogaster 3L BAC RP98-8G7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: UGACUGUGAUGAAAUUAAUUGGUCCGUGUUUAUGAAUUUAUAUUGAUUAAAAACCUUCCAAUUACUGAGCAA hit 6 : 122417 122488 (fwd) 23.16 bits <<<<___________________________________......_______________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA......AaCcCaUGAUAUgAg 54 U: :+ UGAUGA+ U +A+U GGUCCGUGUUU UGA A + U A A+ 122417 UGACUGUGAUGAAAUUAAUU----GGUCCGUGUUUAUGAauuuauAUUGAUUAAAAACCU 122472 ____________>>>> 55 UGGAAgUUCUGAuuca 70 U +AA U CUGA: :A 122473 UCCAAUUACUGAGCAA 122488 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7555,sp|AE003539.3|AE003539 Drosophila melanogaster chromosome 3L, section 46 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: UGACUGUGAUGAAAUUAAUUGGUCCGUGUUUAUGAAUUUAUAUUGAUUAAAAACCUUCCAAUUACUGAGCAA hit 7 : 150351 150422 (fwd) 23.16 bits <<<<___________________________________......_______________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA......AaCcCaUGAUAUgAg 54 U: :+ UGAUGA+ U +A+U GGUCCGUGUUU UGA A + U A A+ 150351 UGACUGUGAUGAAAUUAAUU----GGUCCGUGUUUAUGAauuuauAUUGAUUAAAAACCU 150406 ____________>>>> 55 UGGAAgUUCUGAuuca 70 U +AA U CUGA: :A 150407 UCCAAUUACUGAGCAA 150422 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43313,sp|U28944.1|CEC18A3 Caenorhabditis elegans cosmid C18A3, complete sequence. ----isReversed: 0 ----hitSequence: UGGCAGUGAUGAUCACAAAUCCGUGUUUCUGACAAGCGAUUGACGAUAGAAAACCGGCUGAGCCA hit 8 : 237 301 (fwd) 26.24 bits <<<<___________________________________..___________________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA..AaCcCaUGAUAUgAgUGGA 58 UG::A UGAUGA+C+C+ UCCGUGUUUCUGA A C + UGA ++AG A 237 UGGCAGUGAUGAUCACA-------AAUCCGUGUUUCUGAcaAGCGAUUGACGAUAGAAAA 289 ________>>>> 59 AgUUCUGAuuca 70 CUGA::CA 290 CCGGCUGAGCCA 301 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45375,sp|Z75111.1|CEU18SNOR C.elegans U18 small nucleolar RNA gene. ----isReversed: 0 ----hitSequence: UGGCAGUGAUGAUCACAAAUCCGUGUUUCUGACAAGCGAUUGACGAUAGAAAACCGGCUGAGCCA hit 9 : 1 65 (fwd) 26.24 bits <<<<___________________________________..___________________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA..AaCcCaUGAUAUgAgUGGA 58 UG::A UGAUGA+C+C+ UCCGUGUUUCUGA A C + UGA ++AG A 1 UGGCAGUGAUGAUCACA-------AAUCCGUGUUUCUGAcaAGCGAUUGACGAUAGAAAA 53 ________>>>> 59 AgUUCUGAuuca 70 CUGA::CA 54 CCGGCUGAGCCA 65 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9000,sp|AC010676.6|AC010676 Arabidopsis thaliana chromosome III BAC T22N4 genomic sequence, complete sequence. ----isReversed: 0 ----hitSequence: GAGAUAUGAUGAUCAACAAAUUGGUCCGUGUUUCAGAUUAACCGUGACCGAAAAAAUUCUUAACCAAACUCUGAUCUC hit 10 : 33901 33978 (fwd) 24.83 bits <<<<___________.________________________.........___________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA.........AaCcCaUGAUA 50 ::::+AUGAUGA+C+ C+A UU GGUCCGUGUUUC GA A+C +A A 33901 GAGAUAUGAUGAUCAaCAAAUU---GGUCCGUGUUUCAGAuuaaccgugACCGAAAAAAU 33957 ______.__________>>>> 51 UgAgUG.GAAgUUCUGAuuca 70 U +AA UCUGA:::: 33958 UCUUAAcCAAACUCUGAUCUC 33978 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9008,sp|AC010870.6|AC010870 Arabidopsis thaliana chromosome III BAC T13O15 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: GAGAUAUGAUGAUCAACAAAUUGGUCCGUGUUUCAGAUUAACCGUGACCGAAAAAAUUCUUAACCAAACUCUGAUCUC hit 11 : 7752 7675 (rev) 24.83 bits <<<<___________.________________________.........___________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA.........AaCcCaUGAUA 50 ::::+AUGAUGA+C+ C+A UU GGUCCGUGUUUC GA A+C +A A 78573 GAGAUAUGAUGAUCAaCAAAUU---GGUCCGUGUUUCAGAuuaaccgugACCGAAAAAAU 78629 ______.__________>>>> 51 UgAgUG.GAAgUUCUGAuuca 70 U +AA UCUGA:::: 78630 UCUUAAcCAAACUCUGAUCUC 78650 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9407,sp|AC084320.10|AC084320 Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: GGAACAUGAUGAAGAACCAUUGGUCCGUGUUUCUGAUCAUCUCGUGAUGAAACUACAAUGAAGCACUCAUACUUCUGAUUCC hit 12 : 96112 96031 (rev) 38.24 bits <<<<___________.________________________..__________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA..AaCcCaUGAUAUgAgUGG 57 :G:: AUGAUGA+ + CCA+U GGUCCGUGUUUCUGA A C+C UGAU + A U + 82047 GGAACAUGAUGAAGAaCCAUU----GGUCCGUGUUUCUGAucAUCUCGUGAUGAAACUAC 82102 __............._______>>>> 58 AA.............gUUCUGAuuca 70 AA UUCUGA::C: 82103 AAugaagcacucauaCUUCUGAUUCC 82128 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9850,sp|AC135320.6|AC135320 Medicago truncatula clone mth2-28e9, complete sequence. ----isReversed: 1 ----hitSequence: GAGAAAUGACGAGCUUUACAUUGGUCCGUGUUUCUGAAUCACCGUGACCGACAAAUCUUACCAAUUUCUGAUCUC hit 13 : 55300 55226 (rev) 26.50 bits <<<<___________..________________________.........__________ 1 ugguaAUGAUGAgcU..CCAcUUcaUGGUCCGUGUUUCUGA.........AaCcCaUGAU 49 ::::AAUGA GAGCU CA+U GGUCCGUGUUUCUGA A+C + AU 53345 GAGAAAUGACGAGCUuuACAUU----GGUCCGUGUUUCUGAaucaccgugACCGACAAAU 53400 _________________>>>> 50 AUgAgUGGAAgUUCUGAuuca 70 U+A +AA UUCUGA:::: 53401 CUUAC--CAAUUUCUGAUCUC 53419 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #39810,sp|AF317985.1|AF317985 Arabidopsis thaliana clone 1 small nucleolar RNA R63, complete sequence. ----isReversed: 0 ----hitSequence: GAGAUAUGAUGAUCAACAAAUUGGUCCGUGUUUCAGAUUAACCGUGACCGAAAAAAUUCUUAACCAAACUCUGAUCUC hit 14 : 3 80 (fwd) 24.83 bits <<<<___________.________________________.........___________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA.........AaCcCaUGAUA 50 ::::+AUGAUGA+C+ C+A UU GGUCCGUGUUUC GA A+C +A A 3 GAGAUAUGAUGAUCAaCAAAUU---GGUCCGUGUUUCAGAuuaaccgugACCGAAAAAAU 59 ______.__________>>>> 51 UgAgUG.GAAgUUCUGAuuca 70 U +AA UCUGA:::: 60 UCUUAAcCAAACUCUGAUCUC 80 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #39811,sp|AF317986.1|AF317986 Arabidopsis thaliana clone 2 small nucleolar RNA R63, complete sequence. ----isReversed: 0 ----hitSequence: GAGAUGUGAUGAGUAACAAAUUGGUCCGUGUUUCUGAUUAACCGUGACUGAGAAUUUAUUAACCAAACUCUGAUCUC hit 15 : 1 77 (fwd) 25.26 bits <<<<___________.________________________........____________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA........AaCcCaUGAUAU 51 ::::+ UGAUGAG + C+A UU GGUCCGUGUUUCUGA +AC+ A AU U 1 GAGAUGUGAUGAGUAaCAAAUU---GGUCCGUGUUUCUGAuuaaccguGACUGAGAAUUU 57 _____.__________>>>> 52 gAgUG.GAAgUUCUGAuuca 70 +AA UCUGA:::: 58 AUUAAcCAAACUCUGAUCUC 77 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102281,sp|AL391146.1|ATF2G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F2G14 (ESSA project) ----isReversed: 0 ----hitSequence: GAGAUGUGAUGAGUAACAAAUUGGUCCGUGUUUCUGAUUAACCGUGACUGAGAAUUUAUUAACCAAACUCUGAUCUC hit 16 : 51211 51287 (fwd) 25.26 bits <<<<___________.________________________........____________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA........AaCcCaUGAUAU 51 ::::+ UGAUGAG + C+A UU GGUCCGUGUUUCUGA +AC+ A AU U 51211 GAGAUGUGAUGAGUAaCAAAUU---GGUCCGUGUUUCUGAuuaaccguGACUGAGAAUUU 51267 _____.__________>>>> 52 gAgUG.GAAgUUCUGAuuca 70 +AA UCUGA:::: 51268 AUUAAcCAAACUCUGAUCUC 51287 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #149183,sp|AY103182.1|AY103182 Oryza sativa (indica cultivar-group) snoRNA J7 gene, complete sequence. ----isReversed: 0 ----hitSequence: GGAACAUGAUGAAGAACCAUUGGUCCGUGUUUCUGAUCAUCUCGUGAUGAAACUACAAUGAAGCACUCAUACUUCUGAUUCC hit 17 : 2 83 (fwd) 38.24 bits <<<<___________.________________________..__________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA..AaCcCaUGAUAUgAgUGG 57 :G:: AUGAUGA+ + CCA+U GGUCCGUGUUUCUGA A C+C UGAU + A U + 2 GGAACAUGAUGAAGAaCCAUU----GGUCCGUGUUUCUGAucAUCUCGUGAUGAAACUAC 57 __............._______>>>> 58 AA.............gUUCUGAuuca 70 AA UUCUGA::C: 58 AAugaagcacucauaCUUCUGAUUCC 83 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #164079,sp|AY220636.1|AY220636 Oryza sativa box C/D snoRNA J7.3, complete sequence. ----isReversed: 0 ----hitSequence: UGGAAAUGAUGAAGAAAACAUUGGUCCGUGUUUCUGAUAACCCGUGACUGAUAGCCAUGUUUUCUAA hit 18 : 3 69 (fwd) 29.86 bits <<<<___________________________________._________________.__ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA.AaCcCaUGAUAUgAgUG.GA 58 U:G:AAUGAUGA+ + +AC U+ GGUCCGUGUUUCUGA AACCC UGA UGA G +A 3 UGGAAAUGAUGAAGAAAACAUU--GGUCCGUGUUUCUGAuAACCCGUGAC-UGAUAGcCA 59 ________>>>> 59 AgUUCUGAuuca 70 GUU U :U:A 60 UGUUUU--CUAA 69 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #197670,sp|AJ307927.1|OSA307927 Oryza sativa Z106 snoRNA gene ----isReversed: 0 ----hitSequence: GGAACAUGAUGAAGAACCAUUGGUCCGUGUUUCUGAUCAUCUCGUGAUGAAACUACAAUGAAGCACUCAUACUUCUGAUUCC hit 19 : 2 83 (fwd) 38.24 bits <<<<___________.________________________..__________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA..AaCcCaUGAUAUgAgUGG 57 :G:: AUGAUGA+ + CCA+U GGUCCGUGUUUCUGA A C+C UGAU + A U + 2 GGAACAUGAUGAAGAaCCAUU----GGUCCGUGUUUCUGAucAUCUCGUGAUGAAACUAC 57 __............._______>>>> 58 AA.............gUUCUGAuuca 70 AA UUCUGA::C: 58 AAugaagcacucauaCUUCUGAUUCC 83 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #197681,sp|AJ309198.1|OSA309198 Oryza sativa snoRNA gene cluster V (Z104a, Z104b, Z105, Z106) ----isReversed: 1 ----hitSequence: GGAACAUGAUGAAGAACCAUUGGUCCGUGUUUCUGAUCAUCUCGUGAUGAAACUACAAUGAAGCACUCAUACUUCUGAUUCC hit 20 : 115 34 (rev) 38.24 bits <<<<___________.________________________..__________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA..AaCcCaUGAUAUgAgUGG 57 :G:: AUGAUGA+ + CCA+U GGUCCGUGUUUCUGA A C+C UGAU + A U + 606 GGAACAUGAUGAAGAaCCAUU----GGUCCGUGUUUCUGAucAUCUCGUGAUGAAACUAC 661 __............._______>>>> 58 AA.............gUUCUGAuuca 70 AA UUCUGA::C: 662 AAugaagcacucauaCUUCUGAUUCC 687 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #197751,sp|AJ489951.1|OSA489951 Oryza sativa z106b snoRNA gene ----isReversed: 0 ----hitSequence: GGAACAUGAUGAAGAACCAUGGUCCGUGUUUCUGAUCAUCUCGUGAUGAAACUACAAUGAAGCACUCAUACUUCUGAUUCC hit 21 : 5 85 (fwd) 34.11 bits <<<<___________.________________________..__________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGA..AaCcCaUGAUAUgAgUGG 57 :G:: AUGAUGA+ + CCA+ GGUCCGUGUUUCUGA A C+C UGAU + A U + 5 GGAACAUGAUGAAGAaCCAU-----GGUCCGUGUUUCUGAucAUCUCGUGAUGAAACUAC 59 __............._______>>>> 58 AA.............gUUCUGAuuca 70 AA UUCUGA::C: 60 AAugaagcacucauaCUUCUGAUUCC 85 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #197899,sp|AJ490457.1|OSA490457 Oryza sativa z106c snoRNA gene ----isReversed: 0 ----hitSequence: UGGAAAUGAUGAAGAAAACAUUGGUCCGUGUUUCUGAUAACCCGUGACUGAUAGCCAUGUUUUCUAA hit 22 : 2 68 (fwd) 29.86 bits <<<<___________________________________._________________.__ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGA.AaCcCaUGAUAUgAgUG.GA 58 U:G:AAUGAUGA+ + +AC U+ GGUCCGUGUUUCUGA AACCC UGA UGA G +A 2 UGGAAAUGAUGAAGAAAACAUU--GGUCCGUGUUUCUGAuAACCCGUGAC-UGAUAGcCA 58 ________>>>> 59 AgUUCUGAuuca 70 GUU U :U:A 59 UGUUUU--CUAA 68 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #51475,sp|X75488.1|XLIX1L1B X.laevis intron for XlL1b gene. ----isReversed: 0 ----hitSequence: UGGAUAUGAUGAGCUCCACUUCAUGGUCCGUGUUUCUGAACCGAAGUGAUAUCAAUGGAAGUUCUGAUUAC hit 23 : 49 119 (fwd) 62.92 bits <<<<_________________________________________.______________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGAAaCcCa.UGAUAUgAgUGGAA 59 +:G:+AUGAUGAGCUCCACUUCAUGGUCCGUGUUUCUGAA+C +A UGAUAU A UGGAA 49 UGGAUAUGAUGAGCUCCACUUCAUGGUCCGUGUUUCUGAACCGAAgUGAUAUCAAUGGAA 108 _______>>>> 60 gUUCUGAuuca 70 GUUCUGA:U:+ 109 GUUCUGAUUAC 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #51866,sp|X06552.1|XLRPL1AG X.laevis gene for ribosomal protein L1a ----isReversed: 0 ----hitSequence: UCGAUAUGAUGAGUUCCACUUCAUGGUCCGUGUUUCUGAACCUAGUGAUAUUAAUGGAAGUUCUGAUUUC hit 24 : 2182 2251 (fwd) 66.18 bits <<<<________________________________________________________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAAg 60 +:G:+AUGAUGAG UCCACUUCAUGGUCCGUGUUUCUGAA+C++ UGAUAU+A UGGAAG 2182 UCGAUAUGAUGAGUUCCACUUCAUGGUCCGUGUUUCUGAACCUAGUGAUAUUAAUGGAAG 2241 ______>>>> 61 UUCUGAuuca 70 UUCUGA:U:+ 2242 UUCUGAUUUC 2251 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #51866,sp|X06552.1|XLRPL1AG X.laevis gene for ribosomal protein L1a ----isReversed: 0 ----hitSequence: GCUUUAUGAUGAGCUCCACUUCUAUGGUCCGUGUUUCUGAUGCAUCAUGAUCUCUGUGGAAGUUCUGAUCAG hit 25 : 2863 2934 (fwd) 58.25 bits <<<<____________________._______________.___________________ 1 ugguaAUGAUGAgcUCCAcUUcaU.GGUCCGUGUUUCUGA.AaCcCaUGAUAUgAgUGGA 58 :: U+AUGAUGAGCUCCACUUC++ GGUCCGUGUUUCUGA ++ +CAUGAU U GUGGA 2863 GCUUUAUGAUGAGCUCCACUUCUAuGGUCCGUGUUUCUGAuGCAUCAUGAUCUCUGUGGA 2922 ________>>>> 59 AgUUCUGAuuca 70 AGUUCUGAU :: 2923 AGUUCUGAUCAG 2934 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #51866,sp|X06552.1|XLRPL1AG X.laevis gene for ribosomal protein L1a ----isReversed: 0 ----hitSequence: UAUACAUGAUGAUUUCCACUUCUAUGGUCCGUGUUUCUGAAACUCAUGAUAUUUGUGGAAGUUCUGAUUUA hit 26 : 4707 4777 (fwd) 68.09 bits <<<<____________________.___________________________________ 1 ugguaAUGAUGAgcUCCAcUUcaU.GGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAA 59 U::: AUGAUGA+ UCCACUUC++ GGUCCGUGUUUCUGAAAC+CAUGAUAU+ GUGGAA 4707 UAUACAUGAUGAUUUCCACUUCUAuGGUCCGUGUUUCUGAAACUCAUGAUAUUUGUGGAA 4766 _______>>>> 60 gUUCUGAuuca 70 GUUCUGA:::A 4767 GUUCUGAUUUA 4777 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #51866,sp|X06552.1|XLRPL1AG X.laevis gene for ribosomal protein L1a ----isReversed: 0 ----hitSequence: UGUUAAUGAUGAGUUCCACUUCAUUGGUCCGUGUUUCUGAAACCUUAUGAUCUAAGUGGAAGUUCUGACUGA hit 27 : 5485 5556 (fwd) 62.35 bits <<<<____________________._______________.___________________ 1 ugguaAUGAUGAgcUCCAcUUcaU.GGUCCGUGUUUCUGA.AaCcCaUGAUAUgAgUGGA 58 U:: AAUGAUGAG UCCACUUCAU GGUCCGUGUUUCUGA A+C+ AUGAU U AGUGGA 5485 UGUUAAUGAUGAGUUCCACUUCAUuGGUCCGUGUUUCUGAaACCUUAUGAUCUAAGUGGA 5544 ________>>>> 59 AgUUCUGAuuca 70 AGUUCUGA ::A 5545 AGUUCUGACUGA 5556 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52529,sp|X75486.1|XTIXTL1 X.tropicalis intron for XtL1 gene. ----isReversed: 0 ----hitSequence: UGAAUAUGAUGAGUUCCACUUCAUGGUCCGUGUUUCUGAACCCAGUGAUAAUAAUGGAAGUUCUGAUUUA hit 28 : 57 126 (fwd) 66.07 bits <<<<________________________________________________________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAAg 60 U:::+AUGAUGAG UCCACUUCAUGGUCCGUGUUUCUGAA+CC+ UGAUA++A UGGAAG 57 UGAAUAUGAUGAGUUCCACUUCAUGGUCCGUGUUUCUGAACCCAGUGAUAAUAAUGGAAG 116 ______>>>> 61 UUCUGAuuca 70 UUCUGA:::A 117 UUCUGAUUUA 126 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52539,sp|M15678.1|XTRPL1 Xenopus tropicalis ribosomal protein L1 gene, partial cds. ----isReversed: 0 ----hitSequence: UAUACAUGAUGAUCUCCACUUCUGGUCCGUGUUUCUGAAACUCAUGAUCUUUGUGGAAGUUCUGACUUA hit 29 : 705 773 (fwd) 67.03 bits <<<<________________________________________________________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAAg 60 U::: AUGAUGA+CUCCACUUC+ GGUCCGUGUUUCUGAAAC+CAUGAU U+ GUGGAAG 705 UAUACAUGAUGAUCUCCACUUCU-GGUCCGUGUUUCUGAAACUCAUGAUCUUUGUGGAAG 763 ______>>>> 61 UUCUGAuuca 70 UUCUGA:::A 764 UUCUGACUUA 773 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52539,sp|M15678.1|XTRPL1 Xenopus tropicalis ribosomal protein L1 gene, partial cds. ----isReversed: 0 ----hitSequence: UGUUAAUGAUGAGCUCCACUUCAUGGUCCGUGUUUCUGACCUUAUGAUCUGAGUGGAAGUUCUGAUAUA hit 30 : 1373 1441 (fwd) 63.22 bits <<<<________________________________________________________ 1 ugguaAUGAUGAgcUCCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAAg 60 U: UAAUGAUGAGCUCCACUUCAUGGUCCGUGUUUCUGA +C+ AUGAU UGAGUGGAAG 1373 UGUUAAUGAUGAGCUCCACUUCAUGGUCCGUGUUUCUGA-CCUUAUGAUCUGAGUGGAAG 1431 ______>>>> 61 UUCUGAuuca 70 UUCUGAU :A 1432 UUCUGAUAUA 1441 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #5753,sp|AB061820.1|AB061820 Homo sapiens RPL4, U18 genes for ribosomal protein L4 and U18 snoRNA, complete cds and sequence. ----isReversed: 0 ----hitSequence: CAGUAGUGAUGAAAUUCCACUUCAUUGGUCCGUGUUUCUGAACCACAUGAUUUUCUCGGAUGUUCUGAUGCU hit 31 : 2178 2249 (fwd) 52.54 bits <<<<___________._________.__________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaU.GGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGA 58 :::UA UGAUGA+ U CCACUUCAU GGUCCGUGUUUCUGAA+C CAUGAU U+ GGA 2178 CAGUAGUGAUGAAAUuCCACUUCAUuGGUCCGUGUUUCUGAACCACAUGAUUUUCUCGGA 2237 ________>>>> 59 AgUUCUGAuuca 70 GUUCUGAU::: 2238 UGUUCUGAUGCU 2249 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #5753,sp|AB061820.1|AB061820 Homo sapiens RPL4, U18 genes for ribosomal protein L4 and U18 snoRNA, complete cds and sequence. ----isReversed: 0 ----hitSequence: UCAAAAUGAUGAGAUUCCACUUAAUUGGUCCGUGUUUCUGAAACACAUGAUAUUUGUGGAAAUUCUGACUUG hit 32 : 3401 3472 (fwd) 62.10 bits <<<<___________._________.__________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaU.GGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGA 58 :::AAUGAUGAG U CCACUU AU GGUCCGUGUUUCUGAAAC CAUGAUAU+ GUGGA 3401 UCAAAAUGAUGAGAUuCCACUUAAUuGGUCCGUGUUUCUGAAACACAUGAUAUUUGUGGA 3460 ________>>>> 59 AgUUCUGAuuca 70 A UUCUGA::: 3461 AAUUCUGACUUG 3472 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #5753,sp|AB061820.1|AB061820 Homo sapiens RPL4, U18 genes for ribosomal protein L4 and U18 snoRNA, complete cds and sequence. ----isReversed: 0 ----hitSequence: UUGUUAUGAUGAGAUUCCACUUAAGGUCCGUGUUUCUGAAACAAAUGAUUUUGUGGAAGUUCUGAUUUA hit 33 : 4174 4242 (fwd) 58.21 bits <<<<___________.____________________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAA 59 U+GU+AUGAUGAG U CCACUU A GGUCCGUGUUUCUGAAAC +AUGAU U+ GUGGAA 4174 UUGUUAUGAUGAGAUuCCACUUAA-GGUCCGUGUUUCUGAAACAAAUGAU-UUUGUGGAA 4231 _______>>>> 60 gUUCUGAuuca 70 GUUCUGAUU+A 4232 GUUCUGAUUUA 4242 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #928,sp|AC005800.1|AC005800 Homo sapiens Chromosome 15q26.1 PAC clone pDJ427d15, complete sequence. ----isReversed: 0 ----hitSequence: CUAUUAUGAUGAGAUUACGCUCUGUGGUCCGUGUUUCUGAAACACAGGAUUUUGUGGAAGUUCUCAUUUG hit 34 : 98098 98167 (fwd) 41.21 bits <<<<___________.____________________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAA 59 +:U+AUGAUGAG U C CU + UGGUCCGUGUUUCUGAAAC CA GAU U+ GUGGAA 98098 CUAUUAUGAUGAGAUuACGCUCUGUGGUCCGUGUUUCUGAAACACAGGAU-UUUGUGGAA 98156 _______>>>> 60 gUUCUGAuuca 70 GUUCU AU:+ 98157 GUUCUCAUUUG 98167 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4344,sp|AC013471.7|AC013471 Homo sapiens BAC clone RP11-489A14 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UGUGUAUGAUGAGAUUUCACUUCAUGGUCUGUGUUUCUGAAACACAUGAUGUUGUGGAAGUUCUGAUUUG hit 35 : 130038 129969 (rev) 50.13 bits <<<<___________.____________________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAA 59 :: +AUGAUGAG U CACUUCAUGGUC GUGUUUCUGAAAC CAUGAU U+ GUGGAA 15003 UGUGUAUGAUGAGAUuUCACUUCAUGGUCUGUGUUUCUGAAACACAUGAUGUU-GUGGAA 15061 _______>>>> 60 gUUCUGAuuca 70 GUUCUGA :: 15062 GUUCUGAUUUG 15072 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5535,sp|AC021422.25|AC021422 Homo sapiens chromosome 15, clone RP11-387D10, complete sequence. ----isReversed: 1 ----hitSequence: CUAUUAUGAUGAGAUUACGCUCUGUGGUCCGUGUUUCUGAAACACAGGAUUUUGUGGAAGUUCUCAUUUG hit 36 : 127025 126956 (rev) 41.21 bits <<<<___________.____________________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAA 59 +:U+AUGAUGAG U C CU + UGGUCCGUGUUUCUGAAAC CA GAU U+ GUGGAA 20830 CUAUUAUGAUGAGAUuACGCUCUGUGGUCCGUGUUUCUGAAACACAGGAU-UUUGUGGAA 20888 _______>>>> 60 gUUCUGAuuca 70 GUUCU AU:+ 20889 GUUCUCAUUUG 20899 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5150,sp|AC116913.6|AC116913 Homo sapiens chromosome 15, clone CTD-3185P2, complete sequence. ----isReversed: 1 ----hitSequence: CAGUAGUGAUGAAAUUCCACUUCAUUGGUCCGUGUUUCUGAACCACAUGAUUUUCUCGGAUGUUCUGAUGCU hit 37 : 73982 73911 (rev) 52.54 bits <<<<___________._________.__________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaU.GGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGA 58 :::UA UGAUGA+ U CCACUUCAU GGUCCGUGUUUCUGAA+C CAUGAU U+ GGA 78580 CAGUAGUGAUGAAAUuCCACUUCAUuGGUCCGUGUUUCUGAACCACAUGAUUUUCUCGGA 78639 ________>>>> 59 AgUUCUGAuuca 70 GUUCUGAU::: 78640 UGUUCUGAUGCU 78651 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5150,sp|AC116913.6|AC116913 Homo sapiens chromosome 15, clone CTD-3185P2, complete sequence. ----isReversed: 1 ----hitSequence: UCAAAAUGAUGAGAUUCCACUUAAUUGGUCCGUGUUUCUGAAACACAUGAUAUUUGUGGAAAUUCUGACUUG hit 38 : 72759 72688 (rev) 62.10 bits <<<<___________._________.__________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaU.GGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGA 58 :::AAUGAUGAG U CCACUU AU GGUCCGUGUUUCUGAAAC CAUGAUAU+ GUGGA 79803 UCAAAAUGAUGAGAUuCCACUUAAUuGGUCCGUGUUUCUGAAACACAUGAUAUUUGUGGA 79862 ________>>>> 59 AgUUCUGAuuca 70 A UUCUGA::: 79863 AAUUCUGACUUG 79874 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5150,sp|AC116913.6|AC116913 Homo sapiens chromosome 15, clone CTD-3185P2, complete sequence. ----isReversed: 1 ----hitSequence: UUGUUAUGAUGAGAUUCCACUUAAGGUCCGUGUUUCUGAAACAAAUGAUUUUGUGGAAGUUCUGAUUUA hit 39 : 71986 71918 (rev) 58.21 bits <<<<___________.____________________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAA 59 U+GU+AUGAUGAG U CCACUU A GGUCCGUGUUUCUGAAAC +AUGAU U+ GUGGAA 80576 UUGUUAUGAUGAGAUuCCACUUAA-GGUCCGUGUUUCUGAAACAAAUGAU-UUUGUGGAA 80633 _______>>>> 60 gUUCUGAuuca 70 GUUCUGAUU+A 80634 GUUCUGAUUUA 80644 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #3850,sp|AC002312.1|HSAC2312 Human Chromosome 15 pac pDJ138o23, complete sequence. ----isReversed: 0 ----hitSequence: CUAUUAUGAUGAGAUUACGCUCUGUGGUCCGUGUUUCUGAAACACAGGAUUUUGUGGAAGUUCUCAUUUG hit 40 : 76920 76989 (fwd) 41.21 bits <<<<___________.____________________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAA 59 +:U+AUGAUGAG U C CU + UGGUCCGUGUUUCUGAAAC CA GAU U+ GUGGAA 76920 CUAUUAUGAUGAGAUuACGCUCUGUGGUCCGUGUUUCUGAAACACAGGAU-UUUGUGGAA 76978 _______>>>> 60 gUUCUGAuuca 70 GUUCU AU:+ 76979 GUUCUCAUUUG 76989 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #3920,sp|AC000379.1|HSAC379 Human Chromosome 15 pac pDJ24m8, complete sequence. ----isReversed: 0 ----hitSequence: CUAUUAUGAUGAGAUUACGCUCUGUGGUCCGUGUUUCUGAAACACAGGAUUUUGUGGAAGUUCUCAUUUG hit 41 : 36566 36635 (fwd) 41.21 bits <<<<___________.____________________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaUGGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGAA 59 +:U+AUGAUGAG U C CU + UGGUCCGUGUUUCUGAAAC CA GAU U+ GUGGAA 36566 CUAUUAUGAUGAGAUuACGCUCUGUGGUCCGUGUUUCUGAAACACAGGAU-UUUGUGGAA 36624 _______>>>> 60 gUUCUGAuuca 70 GUUCU AU:+ 36625 GUUCUCAUUUG 36635 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #2950,sp|X75487.1|HSIL41 H.sapiens intron for L4 gene. ----isReversed: 0 ----hitSequence: CAGUAGUGAUGAAAUUCCACUUCAUUGGUCCGUGUUUCUGAACCACAUGAUUUUCUCGGAUGUUCUGAUGCU hit 42 : 44 115 (fwd) 52.54 bits <<<<___________._________.__________________________________ 1 ugguaAUGAUGAgcU.CCAcUUcaU.GGUCCGUGUUUCUGAAaCcCaUGAUAUgAgUGGA 58 :::UA UGAUGA+ U CCACUUCAU GGUCCGUGUUUCUGAA+C CAUGAU U+ GGA 44 CAGUAGUGAUGAAAUuCCACUUCAUuGGUCCGUGUUUCUGAACCACAUGAUUUUCUCGGA 103 ________>>>> 59 AgUUCUGAuuca 70 GUUCUGAU::: 104 UGUUCUGAUGCU 115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=6.02874e-07, 2d-fracLetsThru=3.82696e-07). Filter report: done 1.65905e+10 nucs (frac lets thru so far=6.02874e-07, 2d-fracLetsThru=3.82696e-07). done 1.65905e+10 nucs (frac lets thru so far=6.02874e-07, 2d-fracLetsThru=3.82696e-07). CPU time: 274782.65u 264.68s 76:24:07.33 Elapsed: 77:36:11