params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,17536,M13307.1,1,sp|M13307.1|PMUG7A1 Sea urchin (P.miliaris) small nuclear RNA U71 gene.,1,0,56,2,26.16,UCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGAGGCGAGUGCCCAA,M26276.1/1-55 M13307.1/56-2 M26274.1/1-55,56-2,0,54,M13307.1/56-2
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,17540,M13311.1,1,sp|M13311.1|PMUG7A5 Sea urchin (P.miliaris) small nuclear RNA U75 gene.,0,1,240,300,27.14,UAUCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGUGGCGAGUGCCCAACAAU,M13311.1/240-300,240-300,0,60,M13311.1/240-300
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,17541,M26272.1,1,sp|M26272.1|PMUR7AA Sea urchin U7 RNA; clone 1.,0,2,1,55,26.16,UCUUUCAAGUUUCUCUAGAAGGGUCUCGCUUCCGAAGUCGGAUGCGAGUGCCCAA,M26273.1/1-55 M26272.1/1-55,1-55,0,54,M26272.1/1-55
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,17542,M26273.1,1,sp|M26273.1|PMUR7AB Sea urchin U7 RNA; clone 1.,0,3,1,55,26.16,UCUUUCAAGUUUCUCUAGAAGGGUCUCGCUUCCGAAGUCGGAUGCGAGUGCCCAA,M26273.1/1-55 M26272.1/1-55,1-55,0,54,M26273.1/1-55
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,17543,M26274.1,1,sp|M26274.1|PMUR7AC Sea urchin U7 RNA; clone 1.,0,4,1,55,26.16,UCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGAGGCGAGUGCCCAA,M26276.1/1-55 M13307.1/56-2 M26274.1/1-55,1-55,0,54,M26274.1/1-55
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,17544,M26275.1,1,sp|M26275.1|PMUR7AD Sea urchin U7 RNA; clone 1.,0,5,1,55,26.16,UCUUUCAAGUUUCUCUAGAAGGGUCUCGCUUCCGAAGUCGGAGGCGAGUGCCCAA,M26275.1/1-55,1-55,0,54,M26275.1/1-55
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,17545,M26276.1,1,sp|M26276.1|PMUR7AE Sea urchin U7 RNA; clone 1.,0,6,1,55,26.16,UCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGAGGCGAGUGCCCAA,M26276.1/1-55 M13307.1/56-2 M26274.1/1-55,1-55,0,54,M26276.1/1-55
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,17546,M26277.1,1,sp|M26277.1|PMUR7AF Sea urchin U7 RNA; clone 1.,0,7,1,55,26.16,UCUUUCAAGUUUCUCUAGAAGGGUCUCGCAUCCGAAGUCGGAGGCGAGUGCCCAA,M26277.1/1-55,1-55,0,54,M26277.1/1-55
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,23407,U28353.1,1,sp|U28353.1|TG28353 Toxoplasma gondii nucleoside triphosphate hydrolase (NTP4) gene; complete cds.,0,8,286,347,30.29,GAGCUAAUACAGCUUUUAGAAUUUUGUCUAGCAGGUUUUCUGAAUUUGGUUGGAAAACCUAU,AC121824.2/132037-131976 U28353.1/286-347,286-347,0,61,U28353.1/286-347
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7155,AC097268.10,1,sp|AC097268.10|AC097268 Pan troglodytes  BAC RP43-43O8 (Roswell Park Cancer Institute) complete sequence.,0,9,21707,21769,36.02,UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUAUCAGAAAGCCUCC,AC009167.9/78044-77982 AC139264.2/7472-7534 AC097268.10/21707-21769,21707-21769,0,62,AC097268.10/21707-21769
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4503,AC002397.1,1,sp|AC002397.1|AC002397 Mouse chromosome 6 BAC-284H12 (Research Genetics mouse BAC library) complete sequence.,0,10,156523,156585,67.07,CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCU,X54165.1/2549-2611 AC002397.1/156523-156585 X54748.1/481-543,156523-156585,0,62,AC002397.1/156523-156585
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5391,AC111103.7,1,sp|AC111103.7|AC111103 Mus musculus; clone RP23-187G7; complete sequence.,0,11,76320,76381,28.32,AAAGCACAGCUAUUUUAGAAUUUUUUCCUAGCAGCUUUUCUGACUUUGGUUGGAAAACUCAU,AC111103.7/76320-76381,76320-76381,0,61,AC111103.7/76320-76381
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5823,AC121824.2,1,sp|AC121824.2|AC121824 Mus musculus clone RP23-467P15; complete sequence.,1,12,132037,131976,30.29,GAGCUAAUACAGCUUUUAGAAUUUUGUCUAGCAGGUUUUCUGAAUUUGGUUGGAAAACCUAU,AC121824.2/132037-131976 U28353.1/286-347,132037-131976,0,61,AC121824.2/132037-131976
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5871,AC121882.3,1,sp|AC121882.3|AC121882 Mus musculus chromosome 1 clone RP24-135M19; complete sequence.,1,13,49526,49462,30.24,GAACUAUUAAAGUACUUUUAUAGAAUUUGCCUGGCAGGCUUUCUGACUUUUGUUGGAAAACCCAU,AC121882.3/49526-49462,49526-49462,0,64,AC121882.3/49526-49462
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6136,AC122372.4,1,sp|AC122372.4|AC122372 Mus musculus chromosome 10 clone RP23-463P4; complete sequence.,0,14,55579,55633,35.73,ACAGUUCUCUUAGAAUUUUUCUAGCAGGUUUUCUGACUUUGGUCGGAAAACUUGA,AC122372.4/55579-55633,55579-55633,0,54,AC122372.4/55579-55633
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6562,AC124389.4,1,sp|AC124389.4|AC124389 Mus musculus chromosome 1 clone RP24-429G21; complete sequence.,0,15,96693,96755,28.77,GAGCUAUUGCAGCUCUUUUAGCACUUUUCUAGAAGGUUUUCUGACCUUGGUAGAAAAAGCCAU,AC124389.4/96693-96755,96693-96755,0,62,AC124389.4/96693-96755
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,7094,AC127265.4,1,sp|AC127265.4|AC127265 Mus musculus chromosome 8 clone RP24-341O20; complete sequence.,1,16,104232,104171,29.89,AGUGUACACAGCUCUUUCAGAAUUUUUCUAACAGGAUUUCAGACCUUGGUUGGAAAUCCCAA,AC127265.4/104232-104171,104232-104171,0,61,AC127265.4/104232-104171
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,23944,AL591373.8,1,sp|AL591373.8|AL591373 Mouse DNA sequence from clone RP23-268M6 on chromosome 18,0,17,127622,127671,29.01,UCUUUUAGAAUUUUUCUAGUAGGUUUUCUGACUUUGGUCACAAAACCCAA,AL591373.8/127622-127671,127622-127671,0,49,AL591373.8/127622-127671
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24158,AL606470.15,1,sp|AL606470.15|AL606470 Mouse DNA sequence from clone RP23-293J11 on chromosome 11,1,18,8994,8931,33.54,GAGCUAUUAAAGCUCUUUUAGAAUUUUCUUUAGCAGGUUUUCUUAUUUUGGUGGAAAACCCAAG,AL606470.15/8994-8931,8994-8931,0,63,AL606470.15/8994-8931
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24357,AL627089.12,1,sp|AL627089.12|AL627089 Mouse DNA sequence from clone RP23-107H23 on chromosome 4,1,19,96815,96758,32.59,UUACAGCUCUUUUAUAAUUUUGUCCAGCAGGUUAUCUGAUUUUGAUCAGAAAACCCAU,AL627089.12/96815-96758,96815-96758,0,57,AL627089.12/96815-96758
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24402,AL627251.13,1,sp|AL627251.13|AL627251 Mouse DNA sequence from clone RP23-336G7 on chromosome 4,1,20,58401,58347,28.33,ACAGCUCUGUUAGAACUUCUCUAGCAGGAUUUCUGACUUUGGUCAGAAAACCUAG,AL627251.13/58401-58347,58401-58347,0,54,AL627251.13/58401-58347
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24834,AL669828.13,1,sp|AL669828.13|AL669828 Mouse DNA sequence from clone RP23-163J20 on chromosome 2,0,21,126589,126646,37.61,UUAGAGCUCUUUUAGAAUUUUUUCUAGCAGCUUUUCUGACUUUGGUCAGAAAACCCAU,AL669828.13/126589-126646,126589-126646,0,57,AL669828.13/126589-126646
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25338,AL672308.8,1,sp|AL672308.8|AL672308 Mouse DNA sequence from clone RP23-459H14 on chromosome X,0,22,72809,72873,28.50,AAAGUUAUUAAUGUUCUUUUAGAGAUUUUUCUAGCAGGAUUUCUGAUUUUGGUCAGAAAACCCAA,AL672308.8/72809-72873,72743-72797 72809-72873,0,64,AL672308.8/72809-72873
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25338,AL672308.8,1,sp|AL672308.8|AL672308 Mouse DNA sequence from clone RP23-459H14 on chromosome X,0,23,72743,72797,31.23,ACAGCUCUUUUAGAAUUUUUCUAUCAGGAUUUCUGACUUUGGCUGGAAAACCAAA,AL672308.8/72743-72797,72743-72797 72809-72873,0,54,AL672308.8/72743-72797
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,51547,BX470174.9,1,sp|BX470174.9|BX470174 Mouse DNA sequence from clone RP23-354A24 on chromosome 4,1,24,16405,16351,39.88,ACAGAUCUUUUAGAAUUUUUCUAGCAGCUUUUCUGACUUUGGUCGGAAAACCUAU,BX470174.9/16405-16351,16405-16351,0,54,BX470174.9/16405-16351
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,69350,X54165.1,1,sp|X54165.1|MMSNU7G M.musculus U7 snRNA gene,0,25,2549,2611,67.07,CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCU,X54165.1/2549-2611 AC002397.1/156523-156585 X54748.1/481-543,2549-2611,0,62,X54165.1/2549-2611
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,69351,X54164.1,1,sp|X54164.1|MMSNU7PS M.musculus U7 snRNA type II pseudogene,0,26,976,1042,28.53,AAAGGGCUAUAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUUCCUUGAACCCAAGCCCCAA,X54164.1/976-1042,976-1042,0,66,X54164.1/976-1042
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,75709,X54748.1,1,sp|X54748.1|MMU7 Mouse U7 functional gene for U7 small nulear RNA,0,27,481,543,67.07,CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCU,X54165.1/2549-2611 AC002397.1/156523-156585 X54748.1/481-543,481-543,0,62,X54748.1/481-543
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,76022,X54746.1,1,sp|X54746.1|MMU7PS23 M.musculus U7 pseudogene for U7 small nuclear RNA (clone 23),0,28,298,359,33.76,UGUGGCCACAGCUCUUUUAGAAUUUUUCUAGCAGGAUUUCUGACUUUGCUCAGAAAACCCAA,X54746.1/298-359,298-359,0,61,X54746.1/298-359
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,76023,X07183.1,1,sp|X07183.1|MMU7SNR Mouse U7 snRNA,0,29,3,63,64.31,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACGCCU,X07183.1/3-63,3-63,0,60,X07183.1/3-63
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,76737,M18675.1,1,sp|M18675.1|MMUR7 Mouse U7 small nuclear RNA.,0,30,2,62,64.72,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCY,M18675.1/2-62,2-62,0,60,M18675.1/2-62
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,0,31,5973,6037,53.24,UAAGUCGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUGUGUUGAGCCAACAGCUUUU,Z54313.1/5973-6037,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,64,Z54313.1/5973-6037
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,0,32,6541,6604,73.78,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACACU,Z54313.1/6541-6604,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/6541-6604
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,0,33,9463,9526,72.23,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAAUUAU,Z54313.1/9463-9526,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/9463-9526
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,0,34,12899,12962,68.67,UAAGUGUUACAGUGCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUCU,Z54313.1/12899-12962,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/12899-12962
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,35,13816,13753,59.29,UAAGUGUUACAGCUCUUUUGCUAUUUGUCUAGCAGGUUCUUAUUUUGUAGGAGCCAAAAAUUAU,Z54313.1/13816-13753,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/13816-13753
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,36,13566,13503,72.41,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAACUGU,X64404.1/2814-2751 Z54313.1/13566-13503,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/13566-13503
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,37,13139,13076,62.49,UAAGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGUAGGAGUUAUAAACUGU,Z54313.1/13139-13076,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/13139-13076
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,38,11144,11081,72.21,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUUU,Z54313.1/11144-11081,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/11144-11081
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,39,8652,8586,60.11,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGCAGGUUCUUAUUCUGUAGGAGCCACACUCUUU,Z54313.1/8652-8586,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,66,Z54313.1/8652-8586
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,40,7136,7074,51.62,UAAGUGUUACAGCUCUUUUACUAUUUGUGUAGCAGGUUCUUGCCAUUGUAGGAGCCACCUGAU,Z54313.1/7136-7074,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,62,Z54313.1/7136-7074
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,41,6769,6706,42.38,UAGGUGUUACAGCUCUUUUACUAGUUAGCAAGUAGGCUUUUACUCUGACAGAAUCAUAAAUUGU,Z54313.1/6769-6706,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/6769-6706
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,42,4458,4395,69.66,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGUAGGUUCUUACUCUGUAGGAGCCACACAUCUU,Z54313.1/4458-4395,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/4458-4395
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,43,3375,3312,70.59,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGA,Z54313.1/3375-3312 Z11688.1/339-402,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/3375-3312
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,44,2938,2875,57.65,UAGGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGACUGAGUCAUAAACUGU,Z54313.1/2938-2875,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/2938-2875
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,45,1632,1569,71.40,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAAUUGU,Z54313.1/1632-1569,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/1632-1569
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50070,Z54313.1,1,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes,1,46,415,352,65.80,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUAGUACUCUGUAGGAGCCACACAUCUU,Z54313.1/415-352,12899-12962 5973-6037 3375-3312 13816-13753 6541-6604 4458-4395 1632-1569 11144-11081 415-352 7136-7074 13566-13503 6769-6706 13139-13076 9463-9526 8652-8586 2938-2875,0,63,Z54313.1/415-352
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50071,Z11688.1,1,sp|Z11688.1|XBU7SNRNA X.borealis U7 small nuclear RNA,0,47,339,402,70.59,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGA,Z54313.1/3375-3312 Z11688.1/339-402,339-402,0,63,Z11688.1/339-402
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,52191,X64404.1,1,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes,0,48,1483,1546,72.87,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGU,X64404.1/1483-1546 X64404.1/160-97,5272-5209 2814-2751 1483-1546 160-97 3748-3685 2360-2423 4522-4585,0,63,X64404.1/1483-1546
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,52191,X64404.1,1,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes,0,49,2360,2423,64.65,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCCGGUUUUUACUCUGUUGGAGCCACACACUGU,X64404.1/2360-2423,5272-5209 2814-2751 1483-1546 160-97 3748-3685 2360-2423 4522-4585,0,63,X64404.1/2360-2423
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,52191,X64404.1,1,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes,0,50,4522,4585,69.11,UAAGUGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUCUGUAGGAGCCACAAACUGU,X64404.1/4522-4585,5272-5209 2814-2751 1483-1546 160-97 3748-3685 2360-2423 4522-4585,0,63,X64404.1/4522-4585
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,52191,X64404.1,1,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes,1,51,5272,5209,69.49,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACACUGUAGGAGCCACACACUGU,X64404.1/5272-5209,5272-5209 2814-2751 1483-1546 160-97 3748-3685 2360-2423 4522-4585,0,63,X64404.1/5272-5209
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,52191,X64404.1,1,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes,1,52,3748,3685,68.37,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGGAGGUUCUUACUCUGUAGGAGCCACAAACUGU,X64404.1/3748-3685,5272-5209 2814-2751 1483-1546 160-97 3748-3685 2360-2423 4522-4585,0,63,X64404.1/3748-3685
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,52191,X64404.1,1,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes,1,53,2814,2751,72.41,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAACUGU,X64404.1/2814-2751 Z54313.1/13566-13503,5272-5209 2814-2751 1483-1546 160-97 3748-3685 2360-2423 4522-4585,0,63,X64404.1/2814-2751
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,52191,X64404.1,1,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes,1,54,160,97,72.87,UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGU,X64404.1/1483-1546 X64404.1/160-97,5272-5209 2814-2751 1483-1546 160-97 3748-3685 2360-2423 4522-4585,0,63,X64404.1/160-97
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,1485,AB015355.1,1,sp|AB015355.1|AB015355 Homo sapiens NRAMP2 gene for natural resistance-associated macrophage protein 2; complete cds.,1,55,18502,18439,46.77,GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACCCUUC,AB015355.1/18502-18439 AC087884.18/158471-158408 AF064476.1/141-78,18502-18439,0,63,AB015355.1/18502-18439
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,2371,AB023143.1,1,sp|AB023143.1|AB023143 Homo sapiens mRNA for KIAA0926 protein; complete cds.,0,56,5297,5357,41.09,AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUACCAGAAAACCCCU,AC055839.9/27195-27135 AB023143.1/5297-5357 AF310105.1/5293-5353,5297-5357,0,60,AB023143.1/5297-5357
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,3681,AB036934.1,1,sp|AB036934.1|AB036934 Homo sapiens GPBP; DINB1 genes for Thr/Ser kinase; DINB1; partial cds.,1,57,30781,30720,29.11,UGAAUGUUACAGUUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUCUUCACCAGAAAGCUCCC,AC026424.5/100557-100618 AY273797.1/28889-28828 AB036934.1/30781-30720,30781-30720,0,61,AB036934.1/30781-30720
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9455,AC002395.1,1,sp|AC002395.1|AC002395 Homo sapiens 12 PAC RPCI1-315L5 (Roswell Park Cancer Institute Human PAC library) complete sequence.,0,58,8016,8077,30.50,AGUGUUGCAGCUCUUACAGAAUUUGUCUAGCAGGUUUUCCAGUCUUUACCAGAAAUGCCCCC,AC002395.1/8016-8077 AF085939.1/149-88,8016-8077,0,61,AC002395.1/8016-8077
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9490,AC002460.1,1,sp|AC002460.1|AC002460 Human BAC clone CTB-191D16; complete sequence.,1,59,153050,152987,36.13,UAAAUGUUACAGCUCUUGUACAAUUUUUCUAGUAGGUUUUCUGGUUUUUAUUGGGAAAUCACAC,AC002460.1/153050-152987,153050-152987,0,63,AC002460.1/153050-152987
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9504,AC002476.1,1,sp|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23; complete sequence.,1,60,78540,78489,27.55,UCAGUGUUACAGCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGAAAACCUUCA,M35538.1/294-345 AC002476.1/78540-78489,76935-76875 78540-78489,0,51,AC002476.1/78540-78489
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9504,AC002476.1,1,sp|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23; complete sequence.,1,61,76935,76875,43.36,UCAGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCCAGAAAACCUCC,AC002476.1/76935-76875 M35537.1/292-352,76935-76875 78540-78489,0,60,AC002476.1/76935-76875
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9826,AC004125.1,1,sp|AC004125.1|AC004125 Homo sapiens Chromosome 16 BAC clone CIT987SK-625P11; complete sequence.,1,62,155017,154954,49.65,UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGAUUUUUACCCGGAACCCCUCC,M35539.1/203-266 AC004125.1/155017-154954,155017-154954,0,63,AC004125.1/155017-154954
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9909,AC004226.1,1,sp|AC004226.1|AC004226 Homo sapiens chromosome 5; BAC clone 313n8 (LBNL H146); complete sequence.,1,63,14641,14582,49.25,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUUGGUUUUUUAGCGAAACCCUCC,AC004226.1/14641-14582,14641-14582,0,59,AC004226.1/14641-14582
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9962,AC004455.2,1,sp|AC004455.2|AC004455 Homo sapiens PAC clone RP5-1032B10 from 7; complete sequence.,1,64,28137,28077,47.30,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUCUUUACCAGAAAGCCACU,AC004455.2/28137-28077,28137-28077,0,60,AC004455.2/28137-28077
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9965,AC004458.1,1,sp|AC004458.1|AC004458 Homo sapiens BAC clone CTB-57J11 from 7q21.1-q22; complete sequence.,1,65,101591,101531,35.05,AGUGUUACAGCUCUUAUGGAAUUUGUCUAGCAGGUUUUUUGGUCUUCACAGGAAACUUCCC,AC004458.1/101591-101531,101591-101531,0,60,AC004458.1/101591-101531
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9996,AC004500.1,1,sp|AC004500.1|AC004500 Homo sapiens chromosome 5; P1 clone 1076B9 (LBNL H14); complete sequence.,0,66,62651,62709,41.25,AGUGUUACAGCUCUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCAGAAAGCCCCA,AC026794.5/84116-84058 AC004500.1/62651-62709,62651-62709,0,58,AC004500.1/62651-62709
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,261,AC004870.2,1,sp|AC004870.2|AC004870 Homo sapiens PAC clone RP4-739M23 from 7; complete sequence.,0,67,123033,123106,28.10,UUAGUGUUACAGCUCUUUUAGAAUUUGCUUAGUGGUCUUUCUGUUUUUUUUUUUUUUUUUGCUGGAAAGCCUCU,AC004870.2/123033-123106,123033-123106,0,73,AC004870.2/123033-123106
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,332,AC004943.2,1,sp|AC004943.2|AC004943 Homo sapiens PAC clone RP5-991G20 from 16; complete sequence.,0,68,44488,44548,36.94,UCAGUGUUACAGCUUUUAGAAUUUGUCUAGCAGGCUUUCCGCUCUUCAUUGGAAAGCCCAU,AC004943.2/44488-44548,44488-44548,0,60,AC004943.2/44488-44548
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,727,AC005516.1,1,sp|AC005516.1|AC005516 Homo sapiens Chromosome 4p16.3 BAC clone 399e10 containing Huntington's Disease gene; exons 1-67; complete sequence.,0,69,193046,193108,45.90,UUAGUGCUACAGCUCUUUUGGAAUUUGUCUAGCAGGCUUUCUGGGUUUUGCUGGAAAGCCCUU,Z68756.1/10206-10268 AC005516.1/193046-193108,193046-193108,0,62,AC005516.1/193046-193108
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1000,AC005914.1,1,sp|AC005914.1|AC005914 Homo sapiens chromosome 20; Bac clone 189 (LBNL H135); complete sequence.,0,70,120505,120567,49.19,UUAGUGUUACAACUCUUUUACAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCAGAAAGCCCCC,AC005914.1/120505-120567,120505-120567,0,62,AC005914.1/120505-120567
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1063,AC006020.2,1,sp|AC006020.2|AC006020 Homo sapiens PAC clone RP5-1049N15 from 7q31.2-7q32; complete sequence.,0,71,70674,70736,31.48,UGAGUACUACAGCUCUUCUAGAAUUUGCCUAGCAGGUUUUCCUGUCUUUACUAGAAACCCCUC,AC006020.2/70674-70736,70674-70736,0,62,AC006020.2/70674-70736
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1176,AC006205.9,1,sp|AC006205.9|AC006205 Homo sapiens 12 PAC RP5-1154L15 (Roswell Park Cancer Institute Human PAC Library) complete sequence.,0,72,21990,22052,38.56,GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUUUUUACUGAAACCAAACU,AC006205.9/21990-22052 AC021054.28/142740-142802,21990-22052,0,62,AC006205.9/21990-22052
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1238,AC006323.3,1,sp|AC006323.3|AC006323 Homo sapiens clone RP5-1151M5; complete sequence.,1,73,26342,26282,43.55,ACAGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUAUCAGAAAGCCUCC,AC006323.3/26342-26282,26342-26282,0,60,AC006323.3/26342-26282
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1368,AC006512.13,1,sp|AC006512.13|AC006512 Homo sapiens 12 PAC RP3-461F17 (Roswell Park Cancer Institute Human PAC Library) complete sequence.,0,74,28246,28307,56.42,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGCUUUUUACCGGAAAGCCCCU,AC006512.13/28246-28307 U47924.1/155826-155887,28246-28307,0,61,AC006512.13/28246-28307
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1481,AC007012.1,1,sp|AC007012.1|AC007012 Homo sapiens chromosome 16; clone 185J20; complete sequence.,1,75,17833,17771,37.25,UUAGUGUUACAGUUCUUUCAGAAUUUGUCUAGCAACCUUUCUGGUUUUUGCUAGAAAGUUCUC,AC007012.1/17833-17771,17833-17771,0,62,AC007012.1/17833-17771
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1506,AC007041.3,1,sp|AC007041.3|AC007041 Homo sapiens BAC clone RP11-327N17 from 2; complete sequence.,1,76,10030,9974,33.68,UCAGUGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUUUACCGGAAAACCCAA,AC007041.3/10030-9974,10030-9974,0,56,AC007041.3/10030-9974
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1589,AC007224.5,1,sp|AC007224.5|AC007224 Homo sapiens chromosome 16 clone RP11-475D10; complete sequence.,1,77,108761,108699,43.05,UCAGUGUUAUAGCUCUUUUAAAAUUUGUCUAGCAGGCUUUCCGGUAAAGACUGGAAAGCCCCU,AC007224.5/108761-108699,108761-108699,0,62,AC007224.5/108761-108699
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1630,AC007283.3,1,sp|AC007283.3|AC007283 Homo sapiens BAC clone RP11-536I18 from 2; complete sequence.,1,78,94615,94554,39.71,AGUGUUAACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGUUUUUGCCAGAAAGCCCUA,AC007283.3/94615-94554,94615-94554,0,61,AC007283.3/94615-94554
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1685,AC007374.6,1,sp|AC007374.6|AC007374 Homo sapiens chromosome 14 clone RP11-325L17 map 14q31; complete sequence.,1,79,158213,158153,39.86,AGUGUUACAACUCUUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUACUGAAAAGCCCCA,AC007374.6/158213-158153 AL121784.5/135732-135672,158213-158153,0,60,AC007374.6/158213-158153
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1732,AC007450.1,1,sp|AC007450.1|AC007450 Homo sapiens 12 BAC RP11-434C1 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,80,148895,148835,41.29,AGUGUUACAGCUCUUUUAGAAUCUGUCUAGCAGGUUUUCCAGUCUUCACUGGAAAGCCCUU,AC007450.1/148895-148835,148895-148835,0,60,AC007450.1/148895-148835
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1786,AC007559.3,1,sp|AC007559.3|AC007559 Homo sapiens BAC clone RP11-364J6 from 2; complete sequence.,0,81,53064,53124,44.73,AGUGUUCCAGCUCUUUUAGAAUCUGUCUAGCAGGCUUUCUGGUUUUUACAGGAAGGCCCCU,AC007559.3/53064-53124,53064-53124,0,60,AC007559.3/53064-53124
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1794,AC007567.2,1,sp|AC007567.2|AC007567 Homo sapiens BAC clone CTB-36G2 from 7q31; complete sequence.,0,82,65482,65545,49.10,UAAGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUUAGAAAACCCCCC,AC007567.2/65482-65545 AF172277.1/18142-18079,65482-65545,0,63,AC007567.2/65482-65545
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1982,AC008026.7,1,sp|AC008026.7|AC008026 Homo sapiens chromosome 17; clone RP11-464D20; complete sequence.,1,83,170610,170546,38.28,UUAGUGUUACAGCUCUUUUAGAAUUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGCCCCUA,AC053481.13/12378-12314 AC008026.7/170610-170546,170610-170546,0,64,AC008026.7/170610-170546
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2148,AC008444.4,1,sp|AC008444.4|AC008444 Homo sapiens chromosome 5 clone CTC-338N15; complete sequence.,1,84,58847,58787,38.69,AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUCACCAUAAAAUGCCC,AC093206.2/119291-119351 AC008444.4/58847-58787,58847-58787,0,60,AC008444.4/58847-58787
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2305,AC008645.5,1,sp|AC008645.5|AC008645 Homo sapiens chromosome 5 clone CTB-181L5; complete sequence.,1,85,44962,44889,27.11,UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUUUUACAAAAAGAAGAAGAAAUCCACCCC,AC008645.5/44962-44889 AC016598.5/76452-76525,44962-44889,0,73,AC008645.5/44962-44889
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2685,AC009137.8,1,sp|AC009137.8|AC009137 Homo sapiens chromosome 16 clone RP11-521L9; complete sequence.,1,86,64049,63987,42.85,UGAGUGUUACAGCUCUAUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUCACUGGAAAGCACCC,AC009137.8/64049-63987,64049-63987,0,62,AC009137.8/64049-63987
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2706,AC009167.9,1,sp|AC009167.9|AC009167 Homo sapiens chromosome 16 clone RP11-82O18; complete sequence.,1,87,78044,77982,36.02,UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUAUCAGAAAGCCUCC,AC009167.9/78044-77982 AC139264.2/7472-7534 AC097268.10/21707-21769,78044-77982,0,62,AC009167.9/78044-77982
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2744,AC009244.25,1,sp|AC009244.25|AC009244 Homo sapiens chromosome 7 clone RP11-305M3; complete sequence.,0,88,39314,39376,48.68,UCAGUGUUACAGGUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUACCAGAAAACCCCU,AC009244.25/39314-39376,39314-39376,0,62,AC009244.25/39314-39376
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2850,AC009476.3,1,sp|AC009476.3|AC009476 Homo sapiens BAC clone RP11-207O14 from 2; complete sequence.,1,89,156778,156716,55.61,UAAGUGUUACAGCUCUUUUAGAAUUUGUUUAGCAGGCUUUCUGGUUUUUACUGGAAAGCCCCU,AC009476.3/156778-156716,156778-156716,0,62,AC009476.3/156778-156716
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2955,AC009772.14,1,sp|AC009772.14|AC009772 Homo sapiens 12 BAC RP11-372P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,90,47160,47097,27.52,UAAGUGUUACAGCUUUUUAAAAGAAUUUAUAUAACAGGUUUUCAGUUUUCACUAGAAAACCACU,****    NEW  HIT  #0  ****,,2,0,AC009772.14/47160-47097
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2974,AC009808.8,1,sp|AC009808.8|AC009808 Homo sapiens chromosome 8; clone RP11-138K8; complete sequence.,1,91,93184,93121,35.86,AAAGUGUUGCAGCUCUUUUAGAAUUGAUCUAGCAGGUCUUCGGGUUUUUAACUGGAAACCUUCC,AF201337.3/39682-39619 AC009808.8/93184-93121,93184-93121,0,63,AC009808.8/93184-93121
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2976,AC009812.17,1,sp|AC009812.17|AC009812 Homo sapiens chromosome 8; clone RP11-48B3; complete sequence.,1,92,13495,13435,36.38,GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUUCCAGUGACCAGAAAAUCCUCU,AC009871.21/41991-41931 AC009812.17/13495-13435,13495-13435,0,60,AC009812.17/13495-13435
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2984,AC009871.21,1,sp|AC009871.21|AC009871 Homo sapiens chromosome ; clone RP11-86O7; complete sequence.,1,93,41991,41931,36.38,GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUUCCAGUGACCAGAAAAUCCUCU,AC009871.21/41991-41931 AC009812.17/13495-13435,41991-41931,0,60,AC009871.21/41991-41931
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2992,AC009898.6,1,sp|AC009898.6|AC009898 Homo sapiens chromosome 8; clone RP11-138H14; complete sequence.,0,94,120297,120357,35.75,ACUGUUACAGUUCUUUCAGAAUCUGUCUAGCAAAUUUUCUGGCUUUUCCAGGAAAAUCCCC,AC107965.4/95264-95204 AC009898.6/120297-120357,120297-120357,0,60,AC009898.6/120297-120357
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3438,AC010655.7,1,sp|AC010655.7|AC010655 Homo sapiens chromosome 7 clone RP11-155G14; complete sequence.,0,95,13831,13891,44.41,AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUUUUUGCCGGAAGGCCUCC,AC018635.10/122474-122534 AC010655.7/13831-13891,13831-13891 113260-113196,0,60,AC010655.7/13831-13891
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3438,AC010655.7,1,sp|AC010655.7|AC010655 Homo sapiens chromosome 7 clone RP11-155G14; complete sequence.,1,96,113260,113196,36.07,UUAGUGUUACAGCGCUUUGAGAAUUUGUCUAGCAGGCCUUUGGGUCUUUACUGGAAAACCCCUAA,AC010655.7/113260-113196,13831-13891 113260-113196,0,64,AC010655.7/113260-113196
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3475,AC010748.5,1,sp|AC010748.5|AC010748 Homo sapiens BAC clone CTD-2532L16 from 16; complete sequence.,1,97,51866,51797,26.20,AAAGUAGGACAGCUCUUUUAGAAUUUGUCUAACUGGUUCCUAGUCUUCACUGGAAGCACCCUCCACUCCU,AC010748.5/51866-51797,51866-51797,0,69,AC010748.5/51866-51797
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3519,AC010894.10,1,sp|AC010894.10|AC010894 Homo sapiens BAC clone RP11-483E17 from 2; complete sequence.,1,98,89487,89424,45.69,GAAGUGUUACAGCUCUUUGAGAAUUUGUCUAGCAGGCUUUCCAGGGUUUUGCUGGAAAGCCUCU,AC010894.10/89487-89424 X86019.1/2454-2517,89487-89424,0,63,AC010894.10/89487-89424
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3568,AC011028.11,1,sp|AC011028.11|AC011028 Homo sapiens chromosome 8; clone RP11-118J17; complete sequence.,0,99,84015,84075,38.32,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCCAGUAUUCACUGGAAAGCUCCA,AC011028.11/84015-84075,84015-84075,0,60,AC011028.11/84015-84075
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3746,AC011433.5,1,sp|AC011433.5|AC011433 Homo sapiens chromosome 5 clone P1_988H11; complete sequence.,1,100,43659,43601,33.89,AGUGUUAUAGCUCUUUUAGUUUGUCUAGCAGGUUUUUUGGAUUUUACCAGAAAGCCUGC,AK074123.1/3305-3247 AC011433.5/43659-43601 AC106763.2/104198-104256,43659-43601,0,58,AC011433.5/43659-43601
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3767,AC011461.5,1,sp|AC011461.5|AC011461 Homo sapiens chromosome 19 clone CTC-429L19; complete sequence.,1,101,94997,94943,30.82,UUACAGCUCUUUUAGAAUUUGUCUCAGGUUUUCUGGUUCUCACUGGAAAACCCCC,AC011475.6/176839-176893 AC011461.5/94997-94943,94997-94943,0,54,AC011461.5/94997-94943
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3781,AC011475.6,1,sp|AC011475.6|AC011475 Homo sapiens chromosome 19 clone CTC-539A10; complete sequence.,0,102,176839,176893,30.82,UUACAGCUCUUUUAGAAUUUGUCUCAGGUUUUCUGGUUCUCACUGGAAAACCCCC,AC011475.6/176839-176893 AC011461.5/94997-94943,176839-176893,0,54,AC011475.6/176839-176893
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3894,AC011709.11,1,sp|AC011709.11|AC011709 Homo sapiens chromosome 18; clone RP11-500H12; complete sequence.,0,103,168367,168427,33.70,AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUCUUUAUCAGAAACCACCU,AC113551.3/82802-82742 AF097649.1/27574-27634 AC135335.3/133490-133430 AC011709.11/168367-168427,168367-168427,0,60,AC011709.11/168367-168427
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4107,AC012365.6,1,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2; complete sequence.,1,104,157927,157866,41.88,GAAGUGUUACAGCUGUUUUAGAAUUGUCUAGCAGUCUUUCCGGGUUUUGUCAGAAAGGCCCU,AC012365.6/157927-157866,157927-157866,0,61,AC012365.6/157927-157866
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4179,AC012508.10,1,sp|AC012508.10|AC012508 Homo sapiens BAC clone RP11-521O16 from 2; complete sequence.,0,105,41962,42019,26.43,UUAAGAACUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUCUACUGGAAGCUUCUU,AC012508.10/41962-42019,41962-42019,0,57,AC012508.10/41962-42019
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4234,AC012626.8,1,sp|AC012626.8|AC012626 Homo sapiens chromosome 16 clone CTD-2118O12; complete sequence.,0,106,134696,134751,36.30,UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCCAUAAAAAAAAGUAU,U91322.1/199713-199658 AC130650.2/15574-15629 AC012626.8/134696-134751,134696-134751,0,55,AC012626.8/134696-134751
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4307,AC013414.7,1,sp|AC013414.7|AC013414 Homo sapiens BAC clone RP11-560I3 from 2; complete sequence.,0,107,13532,13594,30.83,CAAGUGUCAUGGCUCUUUUAGAAUUUGUACAGCAGGUUUUCUGGUUUUUGCCGGAAAGCACCC,AC013414.7/13532-13594,13532-13594,0,62,AC013414.7/13532-13594
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4572,AC016240.23,1,sp|AC016240.23|AC016240 Homo sapiens chromosome 8; clone RP11-27N21; complete sequence.,0,108,18817,18880,37.52,AAAGUGUUAACAGCUCUUGCAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUUCUGGAAAGCCUCA,AC016240.23/18817-18880,18817-18880,0,63,AC016240.23/18817-18880
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4651,AC016598.5,1,sp|AC016598.5|AC016598 Homo sapiens chromosome 5 clone CTD-2050E21; complete sequence.,0,109,76452,76525,27.11,UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUUUUACAAAAAGAAGAAGAAAUCCACCCC,AC008645.5/44962-44889 AC016598.5/76452-76525,76452-76525,0,73,AC016598.5/76452-76525
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4750,AC016753.9,1,sp|AC016753.9|AC016753 Homo sapiens BAC clone RP11-513O19 from 2; complete sequence.,1,110,8937,8875,39.30,UUAAUGUUACAGCUCUUUUAGUAUUCGUCUAGCAGCCUUUCCAGUUUUUACCAGAAAGCCCCC,AC016753.9/8937-8875,8937-8875,0,62,AC016753.9/8937-8875
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4963,AC018523.9,1,sp|AC018523.9|AC018523 Homo sapiens chromosome ; clone RP11-140L24; complete sequence.,1,111,124970,124908,35.82,UUAAUGUCAUAGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCUGGUUUUUGCCGGAAAGCCCUC,AC018523.9/124970-124908,124970-124908,0,62,AC018523.9/124970-124908
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4992,AC018635.10,1,sp|AC018635.10|AC018635 Homo sapiens chromosome 7 clone RP11-62J1; complete sequence.,0,112,122474,122534,44.41,AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUUUUUGCCGGAAGGCCUCC,AC018635.10/122474-122534 AC010655.7/13831-13891,122474-122534,0,60,AC018635.10/122474-122534
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4995,AC018638.5,1,sp|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B21; complete sequence.,0,113,77880,77940,38.08,UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUGUGGUGGCUCACACCUGU,AC018638.5/77880-77940 AC093183.3/157888-157828,77880-77940,0,60,AC018638.5/77880-77940
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5045,AC018717.11,1,sp|AC018717.11|AC018717 Homo sapiens BAC clone RP11-505H14 from 2; complete sequence.,0,114,129124,129184,35.62,AGUGUUACCGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCCAAUUUUUGCCAGAAAGCUCCC,AC018717.11/129124-129184,129124-129184,0,60,AC018717.11/129124-129184
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5167,AC019047.7,1,sp|AC019047.7|AC019047 Homo sapiens BAC clone RP11-83N2 from 2; complete sequence.,0,115,68002,68062,30.86,GGUGGUGCAGCUCUUUUAGAAUUUGUCCAGCAGGUUUUCUGGUUCUCACCAGAAAACGCCA,AC019047.7/68002-68062,68002-68062,0,60,AC019047.7/68002-68062
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5455,AC021054.28,1,sp|AC021054.28|AC021054 Homo sapiens 12 BAC RP11-218M22 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,116,142740,142802,38.56,GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUUUUUACUGAAACCAAACU,AC006205.9/21990-22052 AC021054.28/142740-142802,142740-142802,0,62,AC021054.28/142740-142802
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5772,AC022291.27,1,sp|AC022291.27|AC022291 Homo sapiens 3 BAC RP11-71O21 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,117,12097,12157,40.03,AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUCUUGCGGGAAAGUCCCC,AC022291.27/12097-12157,12097-12157,0,60,AC022291.27/12097-12157
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5832,AC022429.7,1,sp|AC022429.7|AC022429 Homo sapiens chromosome 10 clone CTD-2374D18; complete sequence.,0,118,48803,48864,30.59,UCUGUGUUACAGUUCGUUUUGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACCAGAACUUAAU,AC022429.7/48803-48864 AL357042.11/46964-47025,48803-48864,0,61,AC022429.7/48803-48864
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6034,AC023270.7,1,sp|AC023270.7|AC023270 Homo sapiens BAC clone RP11-88L24 from 2; complete sequence.,1,119,89935,89876,39.67,CAUGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUGAAAAUUAAACUCAA,AC023270.7/89935-89876,89935-89876,0,59,AC023270.7/89935-89876
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6053,AC023344.4,1,sp|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8; complete sequence.,1,120,69892,69830,41.05,UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUCUUCACUGGAAGACCACU,AP000856.3/98715-98653 AC023344.4/69892-69830 AC090579.6/177362-177300,69892-69830,0,62,AC023344.4/69892-69830
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6160,AC023891.28,1,sp|AC023891.28|AC023891 Homo sapiens 3 BAC RP13-81O8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,121,59462,59522,46.18,AGUGUUACAGUUCUUUUAGAAUUUAUCUAGCAGGCUUUCUGCUUUUUGCUGGGAAGCCCAU,AC023891.28/59462-59522,59462-59522,0,60,AC023891.28/59462-59522
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6239,AC024221.23,1,sp|AC024221.23|AC024221 Homo sapiens 3 BAC RP11-227J5 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,122,117199,117128,36.98,AAAAUGUUACAGCUCUUUUAGAAUUUAUCUAGCAGGUUUUCUGGUUACUAUAAGAGAAGGGGGAACCACCAC,AC024221.23/117199-117128,117199-117128,0,71,AC024221.23/117199-117128
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6256,AC024270.6,1,sp|AC024270.6|AC024270 Homo sapiens chromosome 15; clone RP11-382A20; complete sequence.,0,123,77896,77958,31.28,CAAUUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUUUUUUUUGUUUGUUUGUUUUU,AC024270.6/77896-77958,77896-77958,0,62,AC024270.6/77896-77958
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6257,AC024288.9,1,sp|AC024288.9|AC024288 Homo sapiens; clone RP11-23B5; complete sequence.,1,124,122392,122330,32.15,UGAGUGUUACAGCUCUUUCAGAACUCUUCUAGCAGUUUUUCCAGCUUUUACCAGAAUCUCUCC,AC024288.9/122392-122330,122392-122330,0,62,AC024288.9/122392-122330
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6339,AC024909.28,1,sp|AC024909.28|AC024909 Homo sapiens 12 BAC RP11-823E8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,125,71388,71451,38.54,GAAGUGUUACAGCUCUUUUAAAAUUUAUCUAACAGGUUUUCUGUUUUUUAACUAGAAAACUCCC,AC024909.28/71388-71451,71388-71451,0,63,AC024909.28/71388-71451
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6345,AC024937.21,1,sp|AC024937.21|AC024937 Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,126,127461,127523,50.46,CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAUGCUUUCUAGUUUUUGCCAGAAAGCCCAU,AC024937.21/127461-127523,127461-127523,0,62,AC024937.21/127461-127523
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6461,AC025423.32,1,sp|AC025423.32|AC025423 Homo sapiens 12 BAC RP11-611O2 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,127,37556,37496,42.65,AGUGUUACAGCUCUUUUAAAAUUUGUCUAAUAGGCUUUCUGGUUUUUGCUGGAAAGCCCCC,AC025423.32/37556-37496,37556-37496,0,60,AC025423.32/37556-37496
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6482,AC025448.6,1,sp|AC025448.6|AC025448 Homo sapiens chromosome 5 clone CTD-2113L7; complete sequence.,1,128,108172,108110,45.69,UAAGUGUUGCAGCUCCUUUAGAAUUUGUCUAGCAGGUUUUAUAGGUUUUACCAGAAAACUUCC,AC025448.6/108172-108110,108172-108110,0,62,AC025448.6/108172-108110
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6483,AC025449.6,1,sp|AC025449.6|AC025449 Homo sapiens chromosome 5 clone CTD-2124B8; complete sequence.,0,129,179991,180053,39.31,UCAGUGUUACGGCUGUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACGAGACUCCCCCA,AC025449.6/179991-180053 AF165926.2/112225-112163,179991-180053,0,62,AC025449.6/179991-180053
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6510,AC025518.8,1,sp|AC025518.8|AC025518 Homo sapiens chromosome 17; clone RP11-713H12; complete sequence.,1,130,91242,91180,52.60,AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUUUCUGGUGGAAAGCUCCC,AC025518.8/91242-91180 AC026130.15/27478-27416,91242-91180,0,62,AC025518.8/91242-91180
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6529,AC025574.19,1,sp|AC025574.19|AC025574 Homo sapiens 12 BAC RP11-348M3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,131,39484,39546,48.82,CAAGUGUUACAGCUCUUUUAGGAUUUGUCUAGCAGGCUUUCAGGUUUUUGCCAGAAACCACCC,AC025574.19/39484-39546 U18671.1/8463-8525,39484-39546,0,62,AC025574.19/39484-39546
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6534,AC025580.8,1,sp|AC025580.8|AC025580 Homo sapiens chromosome 15 clone RP11-519G16 map 15q21.1; complete sequence.,1,132,113015,112953,50.34,GAAGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGCUUUCUGGUUUUUGCUGGAAAGCCCCC,AL357672.14/55654-55716 AC025580.8/113015-112953,113015-112953,0,62,AC025580.8/113015-112953
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6636,AC026130.15,1,sp|AC026130.15|AC026130 Homo sapiens chromosome 17; clone RP11-801J18; complete sequence.,1,133,27478,27416,52.60,AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUUUCUGGUGGAAAGCUCCC,AC025518.8/91242-91180 AC026130.15/27478-27416,27478-27416,0,62,AC026130.15/27478-27416
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6679,AC026250.16,1,sp|AC026250.16|AC026250 Homo sapiens chromosome 11; clone RP11-540A21; complete sequence.,0,134,31328,31388,45.41,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGACUUUCCAGUUUUUGCCAGAAAGCCCAC,AC026250.16/31328-31388,31328-31388,0,60,AC026250.16/31328-31388
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6760,AC026424.5,1,sp|AC026424.5|AC026424 Homo sapiens chromosome 5 clone CTD-2174D2; complete sequence.,0,135,100557,100618,29.11,UGAAUGUUACAGUUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUCUUCACCAGAAAGCUCCC,AC026424.5/100557-100618 AY273797.1/28889-28828 AB036934.1/30781-30720,100557-100618,0,61,AC026424.5/100557-100618
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6855,AC026732.5,1,sp|AC026732.5|AC026732 Homo sapiens chromosome 5 clone CTD-2303L1; complete sequence.,0,136,35983,36045,32.73,UUAGUGUUACAGUUGUUUUAGAACUUGUCUAUCAGGCUUCCCAAUUUUUGCUGGAAAGCCCCU,AC026732.5/35983-36045 AC114967.2/4473-4411,35983-36045,0,62,AC026732.5/35983-36045
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6896,AC026794.5,1,sp|AC026794.5|AC026794 Homo sapiens chromosome 5 clone CTD-2276B5; complete sequence.,1,137,84116,84058,41.25,AGUGUUACAGCUCUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCAGAAAGCCCCA,AC026794.5/84116-84058 AC004500.1/62651-62709,84116-84058,0,58,AC026794.5/84116-84058
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6969,AC027176.22,1,sp|AC027176.22|AC027176 Homo sapiens chromosome 15; clone RP11-493E3; complete sequence.,0,138,57790,57846,33.49,UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUUUGUACCAGAAAACCCCU,AK055252.1/1477-1421 AC027176.22/57790-57846 AL832121.1/4227-4171,57790-57846,0,56,AC027176.22/57790-57846
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7327,AC053481.13,1,sp|AC053481.13|AC053481 Homo sapiens chromosome 17; clone RP11-51L5; complete sequence.,1,139,12378,12314,38.28,UUAGUGUUACAGCUCUUUUAGAAUUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGCCCCUA,AC053481.13/12378-12314 AC008026.7/170610-170546,12378-12314,0,64,AC053481.13/12378-12314
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7374,AC055839.9,1,sp|AC055839.9|AC055839 Homo sapiens chromosome 17; clone RP11-807C20; complete sequence.,1,140,27195,27135,41.09,AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUACCAGAAAACCCCU,AC055839.9/27195-27135 AB023143.1/5297-5357 AF310105.1/5293-5353,27195-27135,0,60,AC055839.9/27195-27135
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7445,AC062037.5,1,sp|AC062037.5|AC062037 Homo sapiens BAC clone RP11-717A5 from 2; complete sequence.,1,141,25859,25800,40.78,AGUGUCACAGCUCUUCUACAAUUUGUCUAGCAGGUUUUCUGGUUCUUCGUGAGAACCCCU,AC062037.5/25859-25800,25859-25800,0,59,AC062037.5/25859-25800
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7925,AC069175.8,1,sp|AC069175.8|AC069175 Homo sapiens chromosome 11; clone RP11-995N21; complete sequence.,0,142,45137,45198,26.27,AGUGGUGCAGCCCUUUUAGAAUUUUUCUGGCAGGUUUUUUGGUUUUCACCAGAAAACAUCCC,AC069175.8/45137-45198 AL591720.12/118785-118724,45137-45198,0,61,AC069175.8/45137-45198
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8034,AC069503.25,1,sp|AC069503.25|AC069503 Homo sapiens 12 BAC RP11-87C12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,143,149631,149573,26.70,AGUGUUAUAGCUCUAAGAAUUUGUCUACCAGGUUUUCUGGUCAUCGCUGGAAACACCCU,AC069503.25/149631-149573,149631-149573,0,58,AC069503.25/149631-149573
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8124,AC073115.5,1,sp|AC073115.5|AC073115 Homo sapiens BAC clone RP11-571N3 from 7; complete sequence.,1,144,24709,24647,42.38,UAAGUGUUAGAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGGUUUUGCUGGAAAGCAAUC,AC073115.5/24709-24647,24709-24647,0,62,AC073115.5/24709-24647
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8246,AC073370.7,1,sp|AC073370.7|AC073370 Homo sapiens chromosome 10 clone RP11-472G21; complete sequence.,1,145,13312,13252,36.66,UUACUGUUAUGUCUUUUAGAAUUUGUCUAGAAGGCUUUCUGGUUUUUACUGGAAAGCCCCC,AC073370.7/13312-13252,13312-13252,0,60,AC073370.7/13312-13252
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8557,AC074363.3,1,sp|AC074363.3|AC074363 Homo sapiens BAC clone RP11-31F22 from 2; complete sequence.,1,146,148009,147947,31.33,UUAGUAUUAGGCCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUCCACCAGAAAACCAUA,AC074363.3/148009-147947,148009-147947,0,62,AC074363.3/148009-147947
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8605,AC078817.18,1,sp|AC078817.18|AC078817 Homo sapiens 12 BAC RP11-244J10 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,147,18926,18863,31.80,AAUAUGUUACAGCUCUUUUAGAAUUUGUCUAGCCAGCUUUCCGGUUUUUGCCCCCCAAAAAAGA,AC078817.18/18926-18863,18926-18863,0,63,AC078817.18/18926-18863
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8647,AC078881.5,1,sp|AC078881.5|AC078881 Homo sapiens BAC clone RP11-130F10 from 4; complete sequence.,0,148,141731,141793,29.92,UUAGUGUUAUAACUCUUCUAUAAUUUGUGUAGCAGGUUUUCCGGUCUUCACUAGAAAAACUCA,AC078881.5/141731-141793,141731-141793,0,62,AC078881.5/141731-141793
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8770,AC079174.20,1,sp|AC079174.20|AC079174 Homo sapiens 12 BAC RP11-651L5 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,149,33229,33289,36.10,AGUGUUACAGCUCUUUUACAAUUUGUGUGGCAGGUUUCCCGGUUUUUACCAGAAAAAUCUA,AC079174.20/33229-33289,33229-33289,0,60,AC079174.20/33229-33289
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8959,AC079780.6,1,sp|AC079780.6|AC079780 Homo sapiens BAC clone RP11-379L16 from 7; complete sequence.,0,150,14973,15036,35.82,UUGGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGUGGUUUUCCGGUCUUUACCAGUAAGCCC,AC079780.6/14973-15036,14973-15036,0,63,AC079780.6/14973-15036
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9023,AC079910.18,1,sp|AC079910.18|AC079910 Homo sapiens 3 BAC RP11-418B12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,151,36407,36469,37.56,CAAGUGUUAUAGCUCUUUUACAAUUUGUCUAGUAGGUUUUCCAGUUUUCACCAGAAAAUCCCG,AC079910.18/36407-36469,36407-36469,0,62,AC079910.18/36407-36469
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9287,AC084377.5,1,sp|AC084377.5|AC084377 Homo sapiens BAC clone RP11-478L9 from 2; complete sequence.,1,152,47926,47866,40.87,UGUAUUACAGCUCUUUUAGAAUUUGUCUAGAAGGCUUUCCGGUUUUUGCAGGAAAGCAACC,AC084377.5/47926-47866,47926-47866,0,60,AC084377.5/47926-47866
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9519,AC087579.17,1,sp|AC087579.17|AC087579 Homo sapiens chromosome 8; clone RP11-429B7; complete sequence.,0,153,62393,62453,41.39,CGUGUUACAGCUCUUUUGGAAUUUGUCUAGCAGGUUUUCUGGUUUUCACUGCAAAACCCCA,M35540.1/230-290 AC087579.17/62393-62453,62393-62453,0,60,AC087579.17/62393-62453
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9543,AC087650.12,1,sp|AC087650.12|AC087650 Homo sapiens; clone RP11-100E5; complete sequence.,1,154,156904,156844,37.70,AGUAUUACAGUUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUUCAUCGGAAACUCUAC,AC087650.12/156904-156844,156904-156844,0,60,AC087650.12/156904-156844
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9601,AC087884.18,1,sp|AC087884.18|AC087884 Homo sapiens 12 BAC RP11-416A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,155,158471,158408,46.77,GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACCCUUC,AB015355.1/18502-18439 AC087884.18/158471-158408 AF064476.1/141-78,158471-158408,0,63,AC087884.18/158471-158408
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9848,AC090579.6,1,sp|AC090579.6|AC090579 Homo sapiens chromosome 8; clone RP11-649G15; complete sequence.,1,156,177362,177300,41.05,UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUCUUCACUGGAAGACCACU,AP000856.3/98715-98653 AC023344.4/69892-69830 AC090579.6/177362-177300,177362-177300,0,62,AC090579.6/177362-177300
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9850,AC090587.10,1,sp|AC090587.10|AC090587 Homo sapiens chromosome 11; clone RP11-348A20; complete sequence.,0,157,88418,88481,45.21,AAAGUGUCACAGCUCUUUUAGAAUUUGUCUAGCAGGGUUUCUGGUUUUCACCAGGAAACAAAAU,AC090587.10/88418-88481,88418-88481,0,63,AC090587.10/88418-88481
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9996,AC090944.2,1,sp|AC090944.2|AC090944 Homo sapiens chromosome 3 clone RP11-238A9 map 3p; complete sequence.,0,158,71381,71440,29.15,UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGCUGGAAAACCCCUUUUUUAAACUCCU,AC090944.2/71381-71440,71381-71440,0,59,AC090944.2/71381-71440
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,36,AC091043.12,1,sp|AC091043.12|AC091043 Homo sapiens chromosome 18; clone RP11-595B24; complete sequence.,1,159,100269,100207,38.76,UGAGUGUUACAGCUCUUUUUGAAUUUGUCUAGCAUGCUUUCUGCUUUUUACUGGAAAGUGCCC,AC091043.12/100269-100207,100269-100207,0,62,AC091043.12/100269-100207
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,97,AC091180.20,1,sp|AC091180.20|AC091180 Homo sapiens chromosome 17; clone RP11-1079K10; complete sequence.,1,160,32988,32925,33.78,UAAAUGUUUCAACUCUGCUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUGUGGAAAAACCCCCA,AC091180.20/32988-32925,32988-32925,0,63,AC091180.20/32988-32925
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,110,AC091212.17,1,sp|AC091212.17|AC091212 Homo sapiens 3 BAC CTD-2021J15 (CalTech Clone Library D) complete sequence.,0,161,23064,23125,33.22,AGUGUUACAGAUCUUUUAGAAUUUGUCUAGUACAUUUUCCAGUUUUCACCAGGAAUCUGCCU,AC091212.17/23064-23125,23064-23125,0,61,AC091212.17/23064-23125
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,653,AC092473.3,1,sp|AC092473.3|AC092473 Homo sapiens chromosome X clone RP11-126D17 map Xp11.4 complete sequence.,1,162,42447,42391,28.58,UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUUUUUACUGGAAAGCCCCA,AC092473.3/42447-42391 AC100789.2/114892-114836,42447-42391,0,56,AC092473.3/42447-42391
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,741,AC092622.2,1,sp|AC092622.2|AC092622 Homo sapiens BAC clone RP11-254O14 from 2; complete sequence.,1,163,8467,8411,33.73,UUACAGCUUUUUCAGAAUUUGUCCAGCAGGUUUUCUGGUUUUCACUGGAAAAUACCU,AC092622.2/8467-8411,8467-8411,0,56,AC092622.2/8467-8411
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,805,AC092687.3,1,sp|AC092687.3|AC092687 Homo sapiens BAC clone RP11-791G15 from 2; complete sequence.,0,164,71239,71295,27.44,AUACAGCUUUUUUAGAAUUUGUCUAGGAGGUUUUCUGGUUUUCACCAGAACCAACCC,AC092687.3/71239-71295,142593-142533 71239-71295,0,56,AC092687.3/71239-71295
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,805,AC092687.3,1,sp|AC092687.3|AC092687 Homo sapiens BAC clone RP11-791G15 from 2; complete sequence.,1,165,142593,142533,36.90,GGUGUUACAGCUUAUUUAGAAUUUGUCUAGCAGAUUUUCCAGCUUUUACUGGAAGCCCCCU,AC092687.3/142593-142533,142593-142533 71239-71295,0,60,AC092687.3/142593-142533
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1123,AC093183.3,1,sp|AC093183.3|AC093183 Homo sapiens chromosome 7 clone RP11-786I1; complete sequence.,1,166,157888,157828,38.08,UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUGUGGUGGCUCACACCUGU,AC018638.5/77880-77940 AC093183.3/157888-157828,157888-157828,0,60,AC093183.3/157888-157828
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1128,AC093206.2,1,sp|AC093206.2|AC093206 Homo sapiens chromosome 5 clone CTC-448D22; complete sequence.,0,167,119291,119351,38.69,AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUCACCAUAAAAUGCCC,AC093206.2/119291-119351 AC008444.4/58847-58787,119291-119351,0,60,AC093206.2/119291-119351
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1178,AC093283.3,1,sp|AC093283.3|AC093283 Homo sapiens chromosome 5 clone RP11-428C6; complete sequence.,1,168,44801,44739,38.81,UAAGUGUUACAGCCCUUUUCAAAUUUGUCUAGCAGGCUUUUUGGGUUAGGUCAGAAAGUCCCC,AC093283.3/44801-44739,44801-44739,0,62,AC093283.3/44801-44739
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1324,AC093575.2,1,sp|AC093575.2|AC093575 Homo sapiens chromosome 1 clone RP11-40C18; complete sequence.,1,169,158650,158590,50.80,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUUUUUGCUGGAAAGCCCAG,AC095030.2/43279-43219 AC093575.2/158650-158590,158650-158590,0,60,AC093575.2/158650-158590
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1447,AC093748.3,1,sp|AC093748.3|AC093748 Homo sapiens BAC clone RP11-29P18 from 4; complete sequence.,0,170,31465,31527,30.86,GAAAUGUAACAGCCCUUUUAGAAUUUGUCUAGCAGGGUUUCUGGUGGUACCAGCAGACUCCAC,AC093748.3/31465-31527,31465-31527,0,62,AC093748.3/31465-31527
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1547,AC093850.2,1,sp|AC093850.2|AC093850 Homo sapiens BAC clone RP11-489P15 from 2; complete sequence.,1,171,34554,34491,26.75,AAUGUUAAAGCUCUUUUAGAAUUUGUCUAGCAGGCAAAUAAAUAAAUAAAAUAAAAUAAAUAAU,AC093850.2/34554-34491,34554-34491,0,63,AC093850.2/34554-34491
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1599,AC093903.3,1,sp|AC093903.3|AC093903 Homo sapiens BAC clone RP11-733C7 from 4; complete sequence.,0,172,113071,113124,31.86,CAGCUCUUUCAGAAUUUGUCUAGCAGGAUUUCUAGUUUUCACCGGAAAACCUCC,AC093903.3/113071-113124,113071-113124,0,53,AC093903.3/113071-113124
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1649,AC095030.2,1,sp|AC095030.2|AC095030 Homo sapiens chromosome 1 clone RP11-375A5; complete sequence.,1,173,43279,43219,50.80,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUUUUUGCUGGAAAGCCCAG,AC095030.2/43279-43219 AC093575.2/158650-158590,43279-43219,0,60,AC095030.2/43279-43219
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2090,AC098481.2,1,sp|AC098481.2|AC098481 Homo sapiens chromosome 3 clone RP11-349E16; complete sequence.,0,174,206246,206310,38.42,AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGGAGGUCUUUACCAGAAAGCCUCC,AC098481.2/206246-206310 AC103559.2/82492-82556,206246-206310,0,64,AC098481.2/206246-206310
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2200,AC098869.3,1,sp|AC098869.3|AC098869 Homo sapiens BAC clone RP11-588L15 from 4; complete sequence.,0,175,180532,180594,39.35,UUUGUGUUACAGCUGCUUUAGAAUUUGUCUAGCAGACUUUCCUGUUUUUAACAGAAAGCCCCC,AC098869.3/180532-180594,180532-180594,0,62,AC098869.3/180532-180594
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2267,AC099397.5,1,sp|AC099397.5|AC099397 Homo sapiens BAC clone RP11-247K9 from 4; complete sequence.,1,176,14602,14543,27.79,UCCGUGUUACAGCUCUUUUAGAAUUCAUCUAGCAGGUUUUCCAGUCUUCGAUAAAUGUGU,AC099397.5/14602-14543,14602-14543,0,59,AC099397.5/14602-14543
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2344,AC099654.5,1,sp|AC099654.5|AC099654 Homo sapiens BAC clone RP11-1217F2 from 7; complete sequence.,0,177,99740,99815,28.48,AAGGUGUUACAGCUCUUUCAGAAUUUGUCUAGUAUGUUUUCCGGUUUUCACUCCCAGGUAGGCUCGGGAAGAGGCA,AC099654.5/99740-99815,99740-99815,0,75,AC099654.5/99740-99815
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2446,AC100789.2,1,sp|AC100789.2|AC100789 Homo sapiens chromosome X; clone RP11-907I17; complete sequence.,1,178,114892,114836,28.58,UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUUUUUACUGGAAAGCCCCA,AC092473.3/42447-42391 AC100789.2/114892-114836,114892-114836,0,56,AC100789.2/114892-114836
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2528,AC103559.2,1,sp|AC103559.2|AC103559 Homo sapiens chromosome 3 clone RP11-286L5; complete sequence.,0,179,82492,82556,38.42,AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGGAGGUCUUUACCAGAAAGCCUCC,AC098481.2/206246-206310 AC103559.2/82492-82556,82492-82556,0,64,AC103559.2/82492-82556
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2554,AC103693.2,1,sp|AC103693.2|AC103693 Homo sapiens chromosome 18; clone CTD-2522C24; complete sequence.,0,180,59274,59330,30.57,UAAAUGUUACAGUUCUUUUAGAAUCUGUCUAGCGAAUUUUCUAGUGGGAAACCUUCC,AC103693.2/59274-59330,59274-59330,0,56,AC103693.2/59274-59330
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2698,AC104046.2,1,sp|AC104046.2|AC104046 Homo sapiens chromosome 15; clone CTD-2262B20; complete sequence.,0,181,41696,41758,37.95,CAAGUGUUACAGAUCUUUUAGAAUCUGUCUAGCAGGUUUUCUGCUUUUCACUGGAAGACUCCC,AC104046.2/41696-41758,41696-41758,0,62,AC104046.2/41696-41758
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2787,AC104190.3,1,sp|AC104190.3|AC104190 Homo sapiens chromosome 3 clone RP11-502L5; complete sequence.,0,182,69378,69438,42.86,AGUGUUACGGCUCUUUUAAAAUUUGUCUCGCAGGCUUUCCGGUUUUUGCCAGAAAGCCCUU,AC104190.3/69378-69438 AC124916.3/205125-205185 AF527417.1/8691-8631,69378-69438,0,60,AC104190.3/69378-69438
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2891,AC104451.2,1,sp|AC104451.2|AC104451 Homo sapiens chromosome 3 clone RP11-632N2; complete sequence.,0,183,39612,39674,34.78,AAAGGUUACAGGCUCUUUUAGAAUUUGUCUACCAGGCUUUCUGGUUUUUACCGGAAAGCCCCG,AC104451.2/39612-39674,39612-39674,0,62,AC104451.2/39612-39674
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3438,AC106763.2,1,sp|AC106763.2|AC106763 Homo sapiens chromosome 5 clone RP11-21C10; complete sequence.,0,184,20597,20657,27.96,UGAGUGUUAUAGCUUACUUAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCUGGAAAGCCGAA,AC106763.2/20597-20657,20597-20657 104198-104256,0,60,AC106763.2/20597-20657
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3438,AC106763.2,1,sp|AC106763.2|AC106763 Homo sapiens chromosome 5 clone RP11-21C10; complete sequence.,0,185,104198,104256,33.89,AGUGUUAUAGCUCUUUUAGUUUGUCUAGCAGGUUUUUUGGAUUUUACCAGAAAGCCUGC,AK074123.1/3305-3247 AC011433.5/43659-43601 AC106763.2/104198-104256,20597-20657 104198-104256,0,58,AC106763.2/104198-104256
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3718,AC107965.4,1,sp|AC107965.4|AC107965 Homo sapiens chromosome 8; clone CTD-2332A4; complete sequence.,1,186,95264,95204,35.75,ACUGUUACAGUUCUUUCAGAAUCUGUCUAGCAAAUUUUCUGGCUUUUCCAGGAAAAUCCCC,AC107965.4/95264-95204 AC009898.6/120297-120357,95264-95204,0,60,AC107965.4/95264-95204
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3734,AC107993.9,1,sp|AC107993.9|AC107993 Homo sapiens chromosome 17; clone RP11-194N12; complete sequence.,1,187,112662,112600,34.21,CAAGUAUUACAGCUCUUUUAGAAUCCGUCUAGCAGGUUUUCCAGUUUUUACCAGAAAACUCUC,AC107993.9/112662-112600,112662-112600,0,62,AC107993.9/112662-112600
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3776,AC108047.4,1,sp|AC108047.4|AC108047 Homo sapiens BAC clone RP11-318K4 from 2; complete sequence.,1,188,15326,15273,42.72,UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGCUUUUCCAGGAAAACCCCU,AC108047.4/15326-15273,15326-15273,0,53,AC108047.4/15326-15273
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3929,AC108471.3,1,sp|AC108471.3|AC108471 Homo sapiens BAC clone RP11-539G18 from 4; complete sequence.,0,189,9788,9848,48.68,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUUUUGCUGGAAAGCUCCC,AC108471.3/9788-9848,9788-9848,0,60,AC108471.3/9788-9848
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4714,AC113551.3,1,sp|AC113551.3|AC113551 Homo sapiens chromosome 18; clone RP11-208K1; complete sequence.,1,190,82802,82742,33.70,AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUCUUUAUCAGAAACCACCU,AC113551.3/82802-82742 AF097649.1/27574-27634 AC135335.3/133490-133430 AC011709.11/168367-168427,82802-82742,0,60,AC113551.3/82802-82742
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4930,AC114967.2,1,sp|AC114967.2|AC114967 Homo sapiens chromosome 5 clone RP11-301A5; complete sequence.,1,191,4473,4411,32.73,UUAGUGUUACAGUUGUUUUAGAACUUGUCUAUCAGGCUUCCCAAUUUUUGCUGGAAAGCCCCU,AC026732.5/35983-36045 AC114967.2/4473-4411,4473-4411,0,62,AC114967.2/4473-4411
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5056,AC116348.3,1,sp|AC116348.3|AC116348 Homo sapiens chromosome 16 clone RP11-297C4; complete sequence.,0,192,38268,38328,43.00,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGUUUUUUGCUAAAAUCCUCCA,AC116348.3/38268-38328 AC002310.1/104613-104673,38268-38328,0,60,AC116348.3/38268-38328
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5706,AC124916.3,1,sp|AC124916.3|AC124916 Homo sapiens chromosome 3 clone RP11-1029M24; complete sequence.,0,193,205125,205185,42.86,AGUGUUACGGCUCUUUUAAAAUUUGUCUCGCAGGCUUUCCGGUUUUUGCCAGAAAGCCCUU,AC104190.3/69378-69438 AC124916.3/205125-205185 AF527417.1/8691-8631,205125-205185,0,60,AC124916.3/205125-205185
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5792,AC125796.2,1,sp|AC125796.2|AC125796 Homo sapiens chromosome 16 clone RP11-420N3; complete sequence.,0,194,22681,22743,35.60,UUAGUGUUACAGUUUUUUCAGAAUUUGUCUAGCAACCUUUCUGGUUUUUGCUAGAAAGUUCUC,AC125796.2/22681-22743,22681-22743,0,62,AC125796.2/22681-22743
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6124,AC130650.2,1,sp|AC130650.2|AC130650 Homo sapiens chromosome 16 clone CTA-276F8; complete sequence.,0,195,15574,15629,36.30,UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCCAUAAAAAAAAGUAU,U91322.1/199713-199658 AC130650.2/15574-15629 AC012626.8/134696-134751,15574-15629,0,55,AC130650.2/15574-15629
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6483,AC135335.3,1,sp|AC135335.3|AC135335 Homo sapiens chromosome 18; clone RP13-1026H1; complete sequence.,1,196,133490,133430,33.70,AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUCUUUAUCAGAAACCACCU,AC113551.3/82802-82742 AF097649.1/27574-27634 AC135335.3/133490-133430 AC011709.11/168367-168427,133490-133430,0,60,AC135335.3/133490-133430
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6853,AC139264.2,1,sp|AC139264.2|AC139264 Homo sapiens chromosome 16 clone RP11-1353E1; complete sequence.,0,197,7472,7534,36.02,UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUAUCAGAAAGCCUCC,AC009167.9/78044-77982 AC139264.2/7472-7534 AC097268.10/21707-21769,7472-7534,0,62,AC139264.2/7472-7534
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz,3905,AF064476.1,1,sp|AF064476.1|AF064476 Homo sapiens natural resistance-associated macrophage protein 2 (NRAMP2) gene; exon 2.,1,198,141,78,46.77,GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACCCUUC,AB015355.1/18502-18439 AC087884.18/158471-158408 AF064476.1/141-78,141-78,0,63,AF064476.1/141-78
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz,6436,AF085939.1,1,sp|AF085939.1|AF085939 Homo sapiens full length insert cDNA clone YR67A12.,1,199,149,88,30.50,AGUGUUGCAGCUCUUACAGAAUUUGUCUAGCAGGUUUUCCAGUCUUUACCAGAAAUGCCCCC,AC002395.1/8016-8077 AF085939.1/149-88,149-88,0,61,AF085939.1/149-88
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz,8611,AF097649.1,1,sp|AF097649.1|AF097649 Homo sapiens chromosome 7qtelo BAC E5; complete sequence.,0,200,27574,27634,33.70,AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUCUUUAUCAGAAACCACCU,AC113551.3/82802-82742 AF097649.1/27574-27634 AC135335.3/133490-133430 AC011709.11/168367-168427,27574-27634,0,60,AF097649.1/27574-27634
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,5041,AF165926.2,1,sp|AF165926.2|AF165926 Homo sapiens chromosome 5p13 BAC clone djn085o06 containing NUP155 gene; complete sequence.,1,201,112225,112163,39.31,UCAGUGUUACGGCUGUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACGAGACUCCCCCA,AC025449.6/179991-180053 AF165926.2/112225-112163,112225-112163,0,62,AF165926.2/112225-112163
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,5542,AF172277.1,1,sp|AF172277.1|AF172277 Homo sapiens 7q31 clones RP11-267O17 and RP11-256L2 including NRCAM and LAMB1R genes; complete sequence.,1,202,18142,18079,49.10,UAAGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUUAGAAAACCCCCC,AC007567.2/65482-65545 AF172277.1/18142-18079,18142-18079,0,63,AF172277.1/18142-18079
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,6652,AF187320.1,1,sp|AF187320.1|AF187320 Homo sapiens transferrin receptor (TFRC) gene; complete cds.,1,203,9294,9231,52.01,CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAUGCUUUCUAGUUUUUGCCAGAAAAGCCCAU,AF187320.1/9294-9231,9294-9231,0,63,AF187320.1/9294-9231
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,7967,AF201337.3,1,sp|AF201337.3|AF201337 Homo sapiens chromosome 8 clone GS1-44D20 map 8q11-q13; complete sequence.,1,204,39682,39619,35.86,AAAGUGUUGCAGCUCUUUUAGAAUUGAUCUAGCAGGUCUUCGGGUUUUUAACUGGAAACCUUCC,AF201337.3/39682-39619 AC009808.8/93184-93121,39682-39619,0,63,AF201337.3/39682-39619
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz,885,AF241726.2,1,sp|AF241726.2|AF241726 Homo sapiens chromosome X clone RP5-819E23; RP1-137P19 map Xp11.4; complete sequence.,0,205,227979,228039,47.27,AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUUUUACCAGAAAGCCCCC,AF241726.2/227979-228039 AF241727.1/39797-39857,227979-228039,0,60,AF241726.2/227979-228039
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz,886,AF241727.1,1,sp|AF241727.1|AF241727 Homo sapiens PAC 972B16 chromosome X map Xp11.4; complete sequence.,0,206,39797,39857,47.27,AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUUUUACCAGAAAGCCCCC,AF241726.2/227979-228039 AF241727.1/39797-39857,39797-39857,0,60,AF241727.1/39797-39857
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz,5319,AF298548.1,1,sp|AF298548.1|AF298548 Homo sapiens caspase recruitment domain protein 7 mRNA; complete cds.,0,207,4934,4994,32.50,AGUAUCACUGCUCUUUUAGAAUUUGUCUAGCAGACUUUCCAGUUUUUACCAGAAAACCCCU,AF298548.1/4934-4994,4934-4994,0,60,AF298548.1/4934-4994
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz,5995,AF310105.1,1,sp|AF310105.1|AF310105 Homo sapiens NALP1 mRNA; complete cds.,0,208,5293,5353,41.09,AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUACCAGAAAACCCCU,AC055839.9/27195-27135 AB023143.1/5297-5357 AF310105.1/5293-5353,5293-5353,0,60,AF310105.1/5293-5353
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz,5781,AF527417.1,1,sp|AF527417.1|AF527417 Homo sapiens cell division cycle 25A (CDC25A) gene; complete cds.,1,209,8691,8631,42.86,AGUGUUACGGCUCUUUUAAAAUUUGUCUCGCAGGCUUUCCGGUUUUUGCCAGAAAGCCCUU,AC104190.3/69378-69438 AC124916.3/205125-205185 AF527417.1/8691-8631,8691-8631,0,60,AF527417.1/8691-8631
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz,6536,AK055252.1,1,sp|AK055252.1|AK055252 Homo sapiens cDNA FLJ30690 fis; clone FCBBF2000576.,1,210,1477,1421,33.49,UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUUUGUACCAGAAAACCCCU,AK055252.1/1477-1421 AC027176.22/57790-57846 AL832121.1/4227-4171,1477-1421,0,56,AK055252.1/1477-1421
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz,9574,AK074123.1,1,sp|AK074123.1|AK074123 Homo sapiens mRNA for FLJ00195 protein.,1,211,3305,3247,33.89,AGUGUUAUAGCUCUUUUAGUUUGUCUAGCAGGUUUUUUGGAUUUUACCAGAAAGCCUGC,AK074123.1/3305-3247 AC011433.5/43659-43601 AC106763.2/104198-104256,3305-3247,0,58,AK074123.1/3305-3247
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz,2690,AK092069.1,1,sp|AK092069.1|AK092069 Homo sapiens cDNA FLJ34750 fis; clone MESAN2009580; weakly similar to PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 10 (EC 5.2.1.8).,1,212,1506,1446,47.61,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCCGGUUUUUGCAGGAAAGCCCCC,AK092069.1/1506-1446 AL357619.15/22273-22333,1506-1446,0,60,AK092069.1/1506-1446
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz,9462,AL133259.24,1,sp|AL133259.24|AL133259 Human DNA sequence from clone RP1-258E1 on chromosome 6 Contains part of the gene for CD83 antigen (activated B lymphocytes; im,0,213,34363,34424,28.11,UGAGUGUGACAGCUCUUUUAGAAUUUAUCUAACAGGGUUUCCAGUUUUCACUGUAUACCAUC,AL133259.24/34363-34424,34363-34424,0,61,AL133259.24/34363-34424
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz,9685,AL136086.8,1,sp|AL136086.8|AL136086 Human DNA sequence from clone GS1-56G5 on chromosome 1 Contains ESTs; STSs; GSSs and a CpG island. Contains part of a novel gen,1,214,69776,69714,50.20,UCAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUGCUGGAAAGCCCAA,AL136086.8/69776-69714,69776-69714,0,62,AL136086.8/69776-69714
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz,9713,AL136120.8,1,sp|AL136120.8|AL136120 Human DNA sequence from clone RP5-975D15 on chromosome 1p31.3-32.2,1,215,102265,102207,42.91,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCUCUUUUCACUGGAAGACUCC,AL136120.8/102265-102207 AL499611.4/67-9,102265-102207,0,58,AL136120.8/102265-102207
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz,9880,AL136999.26,1,sp|AL136999.26|AL136999 Human DNA sequence from clone RP11-187E23 on chromosome 13q21.31-21.33 Contains STSs; GSSs and a CpG island.,1,216,9932,9870,27.98,UUAGAGUUAAAGGUAUUUUAGAAUUUGUCUAUCAGAUUUUCUGGUUUUUACCAGAAAAUUUAA,AL136999.26/9932-9870,9932-9870,0,62,AL136999.26/9932-9870
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz,9985,AL137792.11,1,sp|AL137792.11|AL137792 Human DNA sequence from clone RP5-1053E7 on chromosome 1p21.1-21.3,0,217,31799,31861,47.00,CAAAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGUUUUUGCCAGAAAGCCCCU,AL137792.11/31799-31861,31799-31861,0,62,AL137792.11/31799-31861
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,87,AL138752.5,1,sp|AL138752.5|AL138752 Human DNA sequence from clone RP11-3J10 on chromosome 9p12-13.3 Contains part of a novel gene; the 3' end of the SHB (SHB adapt,0,218,8420,8482,41.28,AAAAUGUUACAGCUCUUCUAGAAUUUGUCUAGCAGAUUUUCCAGUUUUUACUAGAAACCCCCC,AL138752.5/8420-8482,8420-8482,0,62,AL138752.5/8420-8482
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,423,AL139396.18,1,sp|AL139396.18|AL139396 Human DNA sequence from clone RP11-258C19 on chromosome Xp11.21-11.23,0,219,17021,17081,42.51,AGUGUUACAGCUGUUUUAGAAUUUGUCUAGCAGGCAUUCUGGUUUUUGCUGAAAGCCCCCU,AL139396.18/17021-17081,17021-17081,0,60,AL139396.18/17021-17081
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,573,AL157783.15,1,sp|AL157783.15|AL157783 Human DNA sequence from clone RP11-134A8 on chromosome 10,0,220,24232,24292,41.13,UAAGUGUUACAGCUCUUAGAAUUUGUCUAGCAGGCUCUCCGGUUUUUGCCAGAAUGCCCAC,AL157783.15/24232-24292,24232-24292,0,60,AL157783.15/24232-24292
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,723,AL158191.17,1,sp|AL158191.17|AL158191 Human DNA sequence from clone RP11-309H15 on chromosome 13,1,221,33390,33334,28.78,UUACAGGUCUUUUAAAAUUUGUCUAGCAGGUUUUCCAAUAUUUACUGGAAACCCUCC,AL158191.17/33390-33334,33390-33334,0,56,AL158191.17/33390-33334
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,902,AL160291.31,1,sp|AL160291.31|AL160291 Human DNA sequence from clone RP11-85G18 on chromosome 10,1,222,104619,104557,47.33,UGAGUGUUACAGCUCUUUUAGAAUUUUUCUAGCAGGCUUUCCGGUCUUUACCGGAAAGCCUAU,AL160291.31/104619-104557,104619-104557,0,62,AL160291.31/104619-104557
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,922,AL160411.25,1,sp|AL160411.25|AL160411 Human DNA sequence from clone RP4-726N1 on chromosome 20. Contains ESTs; STSs; GSSs and a CpG island. Contains the 5' end of th,1,223,62416,62354,31.43,UAAGGUUACAGCUCUUUUAGAAUUUGUCUAACAGGUUUUCCUGUCUUCACCGGAACUCCCCAA,AL160411.25/62416-62354,62416-62354,0,62,AL160411.25/62416-62354
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,1184,AL162591.16,1,sp|AL162591.16|AL162591 Human DNA sequence from clone RP11-350G8 on chromosome 1,1,224,185144,185082,48.35,UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUUCACUGGAACCCCUCC,AL162591.16/185144-185082,185144-185082,0,62,AL162591.16/185144-185082
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,1190,AL162615.13,1,sp|AL162615.13|AL162615 Human DNA sequence from clone RP5-1041C10 on chromosome 20 Contains the 5' part of the B4GALT5 gene for beta-1;4-galactosyltran,0,225,121597,121653,36.34,UUACAGCUCUUUUAGAAUUUGUCGAGCAGGCUUUCCAGUUUUUGUUGGAAAGCCCCC,AL162615.13/121597-121653,121597-121653,0,56,AL162615.13/121597-121653
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,1673,AL354989.13,1,sp|AL354989.13|AL354989 Human DNA sequence from clone RP11-537H15 on chromosome 9,1,226,30343,30283,46.73,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUAUCGGAAAAUUCCC,AL354989.13/30343-30283,30343-30283,0,60,AL354989.13/30343-30283
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,1871,AL355802.13,1,sp|AL355802.13|AL355802 Human DNA sequence from clone RP3-337H4 on chromosome 6,1,227,54993,54931,35.17,CAAGUGUUACAGUACUUUCAGAAUUGGUCUGGUAGGCUUUCCAGUUUUCUCUGGAAAGCUCCU,AL355802.13/54993-54931,54993-54931,0,62,AL355802.13/54993-54931
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,1992,AL356241.8,1,sp|AL356241.8|AL356241 Human DNA sequence from clone RP11-58K5 on chromosome 13,0,228,149682,149744,51.64,UAAGUGUUACAGCUCUUUUAGAAUUGGUCUAGCAGGUUUUCUGGUUUGCACUAGAAAAACCAU,AL356241.8/149682-149744,149682-149744,0,62,AL356241.8/149682-149744
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2054,AL356354.10,1,sp|AL356354.10|AL356354 Human DNA sequence from clone RP4-651A20 on chromosome 20 Contains ESTs; STSs and GSSs.,0,229,11485,11545,48.01,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGUCUUUCCAGUUUUUGCCGGAAAGCCCCU,AL356354.10/11485-11545,11485-11545,0,60,AL356354.10/11485-11545
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2107,AL356481.16,1,sp|AL356481.16|AL356481 Human DNA sequence from clone RP11-216B9 on chromosome 9,0,230,24551,24612,38.53,UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAAUCUUCACUGAAAAGCUUU,AL356481.16/24551-24612,24551-24612,0,61,AL356481.16/24551-24612
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2206,AL356953.17,1,sp|AL356953.17|AL356953 Human DNA sequence from clone RP11-572A16 on chromosome 1,0,231,43362,43423,35.84,UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCUCUUUUAGAAUUUAAAUAAAAAAUAAUAA,AL356953.17/43362-43423,43362-43423,0,61,AL356953.17/43362-43423
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2236,AL357042.11,1,sp|AL357042.11|AL357042 Human DNA sequence from clone RP11-85O2 on chromosome 10,0,232,46964,47025,30.59,UCUGUGUUACAGUUCGUUUUGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACCAGAACUUAAU,AC022429.7/48803-48864 AL357042.11/46964-47025,46964-47025,0,61,AL357042.11/46964-47025
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2310,AL357503.12,1,sp|AL357503.12|AL357503 Human DNA sequence from clone RP5-899C14 on chromosome 20 Contains the 3' end of a novel gene; ESTs; STSs and GSSs.,1,233,126684,126624,36.19,GGUGUUACAGCUCUUUUAGAAUAUGUCUAGCAGGUUUUUCAGUUUUCACCAGAAUGCCCAC,AL357503.12/126684-126624,126684-126624,0,60,AL357503.12/126684-126624
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2338,AL357619.15,1,sp|AL357619.15|AL357619 Human DNA sequence from clone RP11-703H16 on chromosome 6,0,234,22273,22333,47.61,AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCCGGUUUUUGCAGGAAAGCCCCC,AK092069.1/1506-1446 AL357619.15/22273-22333,22273-22333,0,60,AL357619.15/22273-22333
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2343,AL357672.14,1,sp|AL357672.14|AL357672 Human DNA sequence from clone RP11-437N14 on chromosome 1,0,235,55654,55716,50.34,GAAGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGCUUUCUGGUUUUUGCUGGAAAGCCCCC,AL357672.14/55654-55716 AC025580.8/113015-112953,55654-55716,0,62,AL357672.14/55654-55716
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2533,AL359265.8,1,sp|AL359265.8|AL359265 Human DNA sequence from clone RP11-195C7 on chromosome 1,0,236,68507,68567,29.17,AGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAAGUUUAGAAAAUGAUUCAAAGAGACUGAC,AL359265.8/68507-68567,68507-68567,0,60,AL359265.8/68507-68567
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,3059,AL390774.10,1,sp|AL390774.10|AL390774 Human DNA sequence from clone RP11-417B4 on chromosome 9,0,237,192408,192466,29.87,UUAAUGUUACAGCUCUUUCAGAAUUUGUCUAGGUUUUCUGGUUUAGCAGAAAAAAAAAA,AL390774.10/192408-192466,192408-192466,0,58,AL390774.10/192408-192466
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00066.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,3401,AL445071.15,1,sp|AL445071.15|AL445071 Human DNA sequence from clone RP11-460H18 on chromosome 10,0,238,57365,57426,44.23,UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCCGGCUUUCCAGUUUUGCCGGAAAGCCCCC,AL445071.15/57365-57426,57365-57426,0,61,AL445071.15/57365-57426
./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.b