Params: ./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: tricycle.cs.washington.edu pid: 16182 ----cmFile: Rfam/cm/RF00066.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17536,sp|M13307.1|PMUG7A1 Sea urchin (P.miliaris) small nuclear RNA U71 gene. ----isReversed: 1 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGAGGCGAGUGCCCAA hit 0 : 56 2 (rev) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 2 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCgUCCgaaGUCGGAgGCG 47 >>>>>:::: 56 agacccccU 64 AG::CCC+ 48 AGUGCCCAA 56 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17540,sp|M13311.1|PMUG7A5 Sea urchin (P.miliaris) small nuclear RNA U75 gene. ----isReversed: 0 ----hitSequence: UAUCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGUGGCGAGUGCCCAACAAU hit 1 : 240 300 (fwd) 27.14 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____..>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG..Gagggaga 58 UA++U UU++AG+U U UA+AA GUCU GC :::::::+UC G G GA+::::: 240 UAUCU-UUCAAGUUUCUCUAGAA-GGGUCUCGC--GUCCGAAGUC-GGUGgcGAGUGCCC 294 >>:::: 59 cccccU 64 ::C +U 295 AACAAU 300 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17541,sp|M26272.1|PMUR7AA Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCUUCCGAAGUCGGAUGCGAGUGCCCAA hit 2 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCuUCCgaaGUCGGAuGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17542,sp|M26273.1|PMUR7AB Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCUUCCGAAGUCGGAUGCGAGUGCCCAA hit 3 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCuUCCgaaGUCGGAuGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17543,sp|M26274.1|PMUR7AC Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGAGGCGAGUGCCCAA hit 4 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCgUCCgaaGUCGGAgGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17544,sp|M26275.1|PMUR7AD Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCUUCCGAAGUCGGAGGCGAGUGCCCAA hit 5 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCuUCCgaaGUCGGAgGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17545,sp|M26276.1|PMUR7AE Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGAGGCGAGUGCCCAA hit 6 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCgUCCgaaGUCGGAgGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17546,sp|M26277.1|PMUR7AF Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCAUCCGAAGUCGGAGGCGAGUGCCCAA hit 7 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCaUCCgaaGUCGGAgGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #23407,sp|U28353.1|TG28353 Toxoplasma gondii nucleoside triphosphate hydrolase (NTP4) gene, complete cds. ----isReversed: 0 ----hitSequence: GAGCUAAUACAGCUUUUAGAAUUUUGUCUAGCAGGUUUUCUGAAUUUGGUUGGAAAACCUAU hit 8 : 286 347 (fwd) 30.29 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 A +U UACAGC UUUUA+AA UUUGUCUAGCAGG:U:UCU : U U G : GGA:A: 286 GAGCUAAUACAGC--UUUUAGAAuUUUGUCUAGCAGGUUUUCUGAAU-UUGGUUGGAAAA 342 >:::: 60 ccccU 64 CC++U 343 CCUAU 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7155,sp|AC097268.10|AC097268 Pan troglodytes BAC RP43-43O8 (Roswell Park Cancer Institute) complete sequence. ----isReversed: 0 ----hitSequence: UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUAUCAGAAAGCCUCC hit 9 : 21707 21769 (fwd) 36.02 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU UUACA CUC UUUACAAUUUGUCUAG AGG:U:UC : : U : : GA:A:C 21707 UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUC-UUUAUCAGAAAGC 21765 :::: 61 cccU 64 C+C 21766 CUCC 21769 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4503,sp|AC002397.1|AC002397 Mouse chromosome 6 BAC-284H12 (Research Genetics mouse BAC library) complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCU hit 10 : 156523 156585 (fwd) 67.07 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 156523 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 156581 :::: 61 cccU 64 CCCU 156582 CCCU 156585 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5391,sp|AC111103.7|AC111103 Mus musculus, clone RP23-187G7, complete sequence. ----isReversed: 0 ----hitSequence: AAAGCACAGCUAUUUUAGAAUUUUUUCCUAGCAGCUUUUCUGACUUUGGUUGGAAAACUCAU hit 11 : 76320 76381 (fwd) 28.32 bits ::::::::::::::::::::::::::::..:::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGU..CUAGCAGguucucucuCUGUaGGagggaga 58 AAG ACAGCU UUUUA+AAUUU U CUAGCAG::U:UCU :CU U GG: GGA:A 76320 AAAGC---ACAGCUAUUUUAGAAUUUUUucCUAGCAGCUUUUCUGACU-UUGGUUGGAAA 76375 >>:::: 59 cccccU 64 :: C+U 76376 ACUCAU 76381 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5823,sp|AC121824.2|AC121824 Mus musculus clone RP23-467P15, complete sequence. ----isReversed: 1 ----hitSequence: GAGCUAAUACAGCUUUUAGAAUUUUGUCUAGCAGGUUUUCUGAAUUUGGUUGGAAAACCUAU hit 12 : 132037 131976 (rev) 30.29 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 A +U UACAGC UUUUA+AA UUUGUCUAGCAGG:U:UCU : U U G : GGA:A: 62991 GAGCUAAUACAGC--UUUUAGAAuUUUGUCUAGCAGGUUUUCUGAAU-UUGGUUGGAAAA 63047 >:::: 60 ccccU 64 CC++U 63048 CCUAU 63052 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5871,sp|AC121882.3|AC121882 Mus musculus chromosome 1 clone RP24-135M19, complete sequence. ----isReversed: 1 ----hitSequence: GAACUAUUAAAGUACUUUUAUAGAAUUUGCCUGGCAGGCUUUCUGACUUUUGUUGGAAAACCCAU hit 13 : 49526 49462 (rev) 30.24 bits ::::::::::::::::::::..:::::::::::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUACAGCUCUUUUA..cAAUUUGUCUAGCAGguucucucuCUGUaGGagggaga 58 AA+U UUA+AG+ CUUUUA +AAUUUG CU GCAGG U:UCU :CU U G: GGA:A 123851 GAACUAUUAAAGUACUUUUAuaGAAUUUGCCUGGCAGGCUUUCUGACU-UUUGUUGGAAA 123909 >>:::: 59 cccccU 64 CCC+U 123910 ACCCAU 123915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6136,sp|AC122372.4|AC122372 Mus musculus chromosome 10 clone RP23-463P4, complete sequence. ----isReversed: 0 ----hitSequence: ACAGUUCUCUUAGAAUUUUUCUAGCAGGUUUUCUGACUUUGGUCGGAAAACUUGA hit 14 : 55579 55633 (fwd) 35.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 ACAG+UCU UUA+AAUUU UCUAGCAGG:U:UCU::CU U GG::GGA:A:C 55579 --------ACAGUUCUCUUAGAAUUUUUCUAGCAGGUUUUCUGACU-UUGGUCGGAAAAC 55629 :::: 61 cccU 64 + 55630 UUGA 55633 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6562,sp|AC124389.4|AC124389 Mus musculus chromosome 1 clone RP24-429G21, complete sequence. ----isReversed: 0 ----hitSequence: GAGCUAUUGCAGCUCUUUUAGCACUUUUCUAGAAGGUUUUCUGACCUUGGUAGAAAAAGCCAU hit 15 : 96693 96755 (fwd) 28.77 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A +U UU CAGCUCUUUUA+ A UU UCUAG AG :U:U U :C U GG: G A:A: 96693 GAGCUAUUGCAGCUCUUUUAGCACUUUUCUAGAAGGUUUUCUGACC-UUGGUAGAAAAAG 96751 :::: 61 cccU 64 CC+U 96752 CCAU 96755 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7094,sp|AC127265.4|AC127265 Mus musculus chromosome 8 clone RP24-341O20, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUACACAGCUCUUUCAGAAUUUUUCUAACAGGAUUUCAGACCUUGGUUGGAAAUCCCAA hit 16 : 104232 104171 (rev) 29.89 bits ::::::::.:::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUU.ACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AGUGU ACAGCUCUUU A+AAUUU UCUA CAGG:U:UC :C U GG: GA:A: 72349 --AGUGUAcACAGCUCUUUCAGAAUUUUUCUAACAGGAUUUCAGACC-UUGGUUGGAAAU 72405 >:::: 60 ccccU 64 CCC+ 72406 CCCAA 72410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23944,sp|AL591373.8|AL591373 Mouse DNA sequence from clone RP23-268M6 on chromosome 18 ----isReversed: 0 ----hitSequence: UCUUUUAGAAUUUUUCUAGUAGGUUUUCUGACUUUGGUCACAAAACCCAA hit 17 : 127622 127671 (fwd) 29.01 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UCUUUUA+AAUUU UCUAG AGG:U:U ::CU U GG:: A:A:C 127622 -------------UCUUUUAGAAUUUUUCUAGUAGGUUUUCUGACU-UUGGUCACAAAAC 127667 :::: 61 cccU 64 CC+ 127668 CCAA 127671 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24158,sp|AL606470.15|AL606470 Mouse DNA sequence from clone RP23-293J11 on chromosome 11 ----isReversed: 1 ----hitSequence: GAGCUAUUAAAGCUCUUUUAGAAUUUUCUUUAGCAGGUUUUCUUAUUUUGGUGGAAAACCCAAG hit 18 : 8994 8931 (rev) 33.54 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 A +U UUA+AGCUCUUUUA+AA UUU U UAGCAGGUU:U U:::U U G:::G A:AC 194977 GAGCUAUUAAAGCUCUUUUAGAAuUUUCUUUAGCAGGUUUUCUUAUU-UUGGUGGAAAAC 195035 >:::: 60 ccccU 64 CC + 195036 CCAAG 195040 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24357,sp|AL627089.12|AL627089 Mouse DNA sequence from clone RP23-107H23 on chromosome 4 ----isReversed: 1 ----hitSequence: UUACAGCUCUUUUAUAAUUUUGUCCAGCAGGUUAUCUGAUUUUGAUCAGAAAACCCAU hit 19 : 96815 96758 (rev) 32.59 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 UUACAGCUCUUUUA AA UUUGUC AGCAGG:U UC :::U U G::: GA A: 85561 ------UUACAGCUCUUUUAUAAuUUUGUCCAGCAGGUUAUCUGAUU-UUGAUCAGAAAA 85613 >:::: 60 ccccU 64 CCC+U 85614 CCCAU 85618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24402,sp|AL627251.13|AL627251 Mouse DNA sequence from clone RP23-336G7 on chromosome 4 ----isReversed: 1 ----hitSequence: ACAGCUCUGUUAGAACUUCUCUAGCAGGAUUUCUGACUUUGGUCAGAAAACCUAG hit 20 : 58401 58347 (rev) 28.33 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 ACAGCUCU UUA+AA UU UCUAGCAGG:U:UC ::CU U GG:: GA:A:C 145639 --------ACAGCUCUGUUAGAACUUCUCUAGCAGGAUUUCUGACU-UUGGUCAGAAAAC 145689 :::: 61 cccU 64 C++ 145690 CUAG 145693 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24834,sp|AL669828.13|AL669828 Mouse DNA sequence from clone RP23-163J20 on chromosome 2 ----isReversed: 0 ----hitSequence: UUAGAGCUCUUUUAGAAUUUUUUCUAGCAGCUUUUCUGACUUUGGUCAGAAAACCCAU hit 21 : 126589 126646 (fwd) 37.61 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 UUA AGCUCUUUUA+AA UUU UCUAGCAG::U:UC ::CU U GG:: GA:A: 126589 ------UUAGAGCUCUUUUAGAAuUUUUUCUAGCAGCUUUUCUGACU-UUGGUCAGAAAA 126641 >:::: 60 ccccU 64 :CC+U 126642 CCCAU 126646 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25338,sp|AL672308.8|AL672308 Mouse DNA sequence from clone RP23-459H14 on chromosome X ----isReversed: 0 ----hitSequence: AAAGUUAUUAAUGUUCUUUUAGAGAUUUUUCUAGCAGGAUUUCUGAUUUUGGUCAGAAAACCCAA hit 22 : 72809 72873 (fwd) 28.50 bits :::::.:::::::::::::::::.:::::::::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGU.GUUACAGCUCUUUUAcA.AUUUGUCUAGCAGguucucucuCUGUaGGagggaga 58 AAGU UUA+ G+UCUUUUA+A AUUU UCUAGCAGG:U:UC :::U U G::: GA:A 72809 AAAGUuAUUAAUGUUCUUUUAGAgAUUUUUCUAGCAGGAUUUCUGAUU-UUGGUCAGAAA 72867 >>:::: 59 cccccU 64 :CCC+ 72868 ACCCAA 72873 ----endhit ----hitSequence: ACAGCUCUUUUAGAAUUUUUCUAUCAGGAUUUCUGACUUUGGCUGGAAAACCAAA hit 23 : 72743 72797 (fwd) 31.23 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 ACAGCUCUUUUA+AAUUU UCUA CAGG:U:UCU CU U GG GGA:A:C 72743 --------ACAGCUCUUUUAGAAUUUUUCUAUCAGGAUUUCUGACU-UUGGCUGGAAAAC 72793 :::: 61 cccU 64 C + 72794 CAAA 72797 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51547,sp|BX470174.9|BX470174 Mouse DNA sequence from clone RP23-354A24 on chromosome 4 ----isReversed: 1 ----hitSequence: ACAGAUCUUUUAGAAUUUUUCUAGCAGCUUUUCUGACUUUGGUCGGAAAACCUAU hit 24 : 16405 16351 (rev) 39.88 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 ACAG UCUUUUA+AAUUU UCUAGCAG::U:UCU::CU U GG::GGA:A:: 90898 --------ACAGAUCUUUUAGAAUUUUUCUAGCAGCUUUUCUGACU-UUGGUCGGAAAAC 90948 :::: 61 cccU 64 C++U 90949 CUAU 90952 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #69350,sp|X54165.1|MMSNU7G M.musculus U7 snRNA gene ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCU hit 25 : 2549 2611 (fwd) 67.07 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 2549 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 2607 :::: 61 cccU 64 CCCU 2608 CCCU 2611 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #69351,sp|X54164.1|MMSNU7PS M.musculus U7 snRNA type II pseudogene ----isReversed: 0 ----hitSequence: AAAGGGCUAUAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUUCCUUGAACCCAAGCCCCAA hit 26 : 976 1042 (fwd) 28.53 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_...____>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU...GUaGGagggag 57 AAG G UA AGCUCUUUUA+AAUUUGUCUAGCAGGU :U : :U U G: : A: 976 AAAGGGCUAUAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUuucCUUGAACCCAA 1035 >>>:::: 58 acccccU 64 CCCC+ 1036 GCCCCAA 1042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #75709,sp|X54748.1|MMU7 Mouse U7 functional gene for U7 small nulear RNA ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCU hit 27 : 481 543 (fwd) 67.07 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 481 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 539 :::: 61 cccU 64 CCCU 540 CCCU 543 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #76022,sp|X54746.1|MMU7PS23 M.musculus U7 pseudogene for U7 small nuclear RNA (clone 23) ----isReversed: 0 ----hitSequence: UGUGGCCACAGCUCUUUUAGAAUUUUUCUAGCAGGAUUUCUGACUUUGCUCAGAAAACCCAA hit 28 : 298 359 (fwd) 33.76 bits :::::.::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGU.GUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 +GU G ACAGCUCUUUUA+AAUUU UCUAGCAGG:U:UC :: U U G :: GA:A: 298 --UGUgGCCACAGCUCUUUUAGAAUUUUUCUAGCAGGAUUUCUGACU-UUGCUCAGAAAA 354 >:::: 60 ccccU 64 CCC+ 355 CCCAA 359 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #76023,sp|X07183.1|MMU7SNR Mouse U7 snRNA ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACGCCU hit 29 : 3 63 (fwd) 64.31 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 3 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 59 :::: 61 cccU 64 CCU 60 GCCU 63 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #76737,sp|M18675.1|MMUR7 Mouse U7 small nuclear RNA. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCY hit 30 : 2 62 (fwd) 64.72 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 2 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 58 :::: 61 cccU 64 CCC+ 59 CCCY 62 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUCGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUGUGUUGAGCCAACAGCUUUU hit 31 : 5973 6037 (fwd) 53.24 bits :::::.::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGU.GUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 UAAGU GUUACAGCUCUUUUAC+AUUUGU UAGCAGG:U:U::+ UGU G +::A:A: 5973 UAAGUcGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUGUGUUGAGCCAACAG 6032 >:::: 60 ccccU 64 C + U 6033 CUUUU 6037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACACU hit 32 : 6541 6604 (fwd) 73.78 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 6541 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 6600 :::: 61 cccU 64 C CU 6601 CACU 6604 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAAUUAU hit 33 : 9463 9526 (fwd) 72.23 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG::U:U::CUCUGUAGGAG::A:A:: 9463 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 9522 :::: 61 cccU 64 ++U 9523 UUAU 9526 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGUGCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUCU hit 34 : 12899 12962 (fwd) 68.67 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAG+ CUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 12899 UAAGUGUUACAGUGCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 12958 :::: 61 cccU 64 C+CU 12959 CUCU 12962 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUGCUAUUUGUCUAGCAGGUUCUUAUUUUGUAGGAGCCAAAAAUUAU hit 35 : 13816 13753 (rev) 59.29 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUU C+AUUUGUCUAGCAG::U U:::U:UGUAG:A:::A A:: 371 UAAGUGUUACAGCUCUUUUGCUAUUUGUCUAGCAGGUUCUUAUUUUGUAGGAGCCAAAAA 430 :::: 61 cccU 64 ++U 431 UUAU 434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAACUGU hit 36 : 13566 13503 (rev) 72.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG::U:U::CUCUGUAGGAG::A:A:: 621 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 680 :::: 61 cccU 64 C+ U 681 CUGU 684 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGUAGGAGUUAUAAACUGU hit 37 : 13139 13076 (rev) 62.49 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUU CUAGCAG::U U::CUCUGUAGGAG::A A:: 1048 UAAGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGUAGGAGUUAUAAA 1107 :::: 61 cccU 64 C+ U 1108 CUGU 1111 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUUU hit 38 : 11144 11081 (rev) 72.21 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 3043 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 3102 :::: 61 cccU 64 C+ U 3103 CUUU 3106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGCAGGUUCUUAUUCUGUAGGAGCCACACUCUUU hit 39 : 8652 8586 (rev) 60.11 bits ::::::::::::::::::::::::::::::::::...:<<<<<<<<<<_____>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA...GguucucucuCUGUaGGagggag 57 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCA G UU:U:::UCUGUAGGA:::A: 5535 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAgcaGGUUCUUAUUCUGUAGGAGCCAC 5594 >>>:::: 58 acccccU 64 AC C+ U 5595 ACUCUUU 5601 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUGUAGCAGGUUCUUGCCAUUGUAGGAGCCACCUGAU hit 40 : 7136 7074 (rev) 51.62 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGU UAGCAGGUU:+:+C::U U ::G+:+:ACC 7051 UAAGUGUUACAGCUCUUUUACUAUUUGUGUAGCAGGUUCUUGCCAU-UGUAGGAGCCACC 7109 :::: 61 cccU 64 +U 7110 UGAU 7113 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAGGUGUUACAGCUCUUUUACUAGUUAGCAAGUAGGCUUUUACUCUGACAGAAUCAUAAAUUGU hit 41 : 6769 6706 (rev) 42.38 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UA GUGUUACAGCUCUUUUAC+A UU C AG AG: U U:: UCUG + GA ::A A : 7418 UAGGUGUUACAGCUCUUUUACUAGUUAGCAAGUAGGCUUUUACUCUGACAGAAUCAUAAA 7477 :::: 61 cccU 64 + U 7478 UUGU 7481 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGUAGGUUCUUACUCUGUAGGAGCCACACAUCUU hit 42 : 4458 4395 (rev) 69.66 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAG AG:UU:U::CUCUGUAGGAG::A:AC: 9729 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGUAGGUUCUUACUCUGUAGGAGCCACACA 9788 :::: 61 cccU 64 C U 9789 UCUU 9792 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGA hit 43 : 3375 3312 (rev) 70.59 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 10812 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 10871 :::: 61 cccU 64 C+ 10872 CUGA 10875 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAGGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGACUGAGUCAUAAACUGU hit 44 : 2938 2875 (rev) 57.65 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UA GUGUUACAGCUCUUUUAC+AUUU CUAGCAG::U U::CUCUG + GAG::A A:: 11249 UAGGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGACUGAGUCAUAAA 11308 :::: 61 cccU 64 C+ U 11309 CUGU 11312 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAAUUGU hit 45 : 1632 1569 (rev) 71.40 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG::U:U::CUCUGUAGGAG::A:A:: 12555 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 12614 :::: 61 cccU 64 + U 12615 UUGU 12618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUAGUACUCUGUAGGAGCCACACAUCUU hit 46 : 415 352 (rev) 65.80 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU ::CUCUGUAGGAG:: AC: 13772 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUAGUACUCUGUAGGAGCCACACA 13831 :::: 61 cccU 64 C U 13832 UCUU 13835 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50071,sp|Z11688.1|XBU7SNRNA X.borealis U7 small nuclear RNA ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGA hit 47 : 339 402 (fwd) 70.59 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 339 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 398 :::: 61 cccU 64 C+ 399 CUGA 402 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGU hit 48 : 1483 1546 (fwd) 72.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 1483 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 1542 :::: 61 cccU 64 C+ U 1543 CUGU 1546 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCCGGUUUUUACUCUGUUGGAGCCACACACUGU hit 49 : 2360 2423 (fwd) 64.65 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGC G:UU U::CUCUGU GGAG::A AC: 2360 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCCGGUUUUUACUCUGUUGGAGCCACACA 2419 :::: 61 cccU 64 C+ U 2420 CUGU 2423 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUCUGUAGGAGCCACAAACUGU hit 50 : 4522 4585 (fwd) 69.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGU UAGCAG::U:U::CUCUGUAGGAG::A:A:: 4522 UAAGUGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 4581 :::: 61 cccU 64 C+ U 4582 CUGU 4585 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACACUGUAGGAGCCACACACUGU hit 51 : 5272 5209 (rev) 69.49 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::C CUGUAGG G::A:AC: 521 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACACUGUAGGAGCCACACA 580 :::: 61 cccU 64 C+ U 581 CUGU 584 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGGAGGUUCUUACUCUGUAGGAGCCACAAACUGU hit 52 : 3748 3685 (rev) 68.37 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAG AG::U:U::CUCUGUAGGAG::A:A:: 2045 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGGAGGUUCUUACUCUGUAGGAGCCACAAA 2104 :::: 61 cccU 64 C+ U 2105 CUGU 2108 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAACUGU hit 53 : 2814 2751 (rev) 72.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG::U:U::CUCUGUAGGAG::A:A:: 2979 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 3038 :::: 61 cccU 64 C+ U 3039 CUGU 3042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGU hit 54 : 160 97 (rev) 72.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 5633 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 5692 :::: 61 cccU 64 C+ U 5693 CUGU 5696 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #1485,sp|AB015355.1|AB015355 Homo sapiens NRAMP2 gene for natural resistance-associated macrophage protein 2, complete cds. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACCCUUC hit 55 : 18502 18439 (rev) 46.77 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAU UGUCUAGCAGG+U:UC + U U+ + GA:A+C 25498 GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACC 25557 :::: 61 cccU 64 C+ 25558 CUUC 25561 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2371,sp|AB023143.1|AB023143 Homo sapiens mRNA for KIAA0926 protein, complete cds. ----isReversed: 0 ----hitSequence: AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUACCAGAAAACCCCU hit 56 : 5297 5357 (fwd) 41.09 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU U ACAGCUCUUUUA+AAUUUGUCUAGCAGG U:UC :::U U ::: GA:A C 5297 --AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUU-UUUACCAGAAAAC 5353 :::: 61 cccU 64 CCCU 5354 CCCU 5357 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #3681,sp|AB036934.1|AB036934 Homo sapiens GPBP, DINB1 genes for Thr/Ser kinase, DINB1, partial cds. ----isReversed: 1 ----hitSequence: UGAAUGUUACAGUUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUCUUCACCAGAAAGCUCCC hit 57 : 30781 30720 (rev) 29.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGUUACAG U UUU A+AAUUUGUCUA CAGG:U:UC ::: U ::: GA:A:C 33686 UGAAUGUUACAG-UUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUC-UUCACCAGAAAGC 33743 :::: 61 cccU 64 CC 33744 UCCC 33747 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9455,sp|AC002395.1|AC002395 Homo sapiens 12 PAC RPCI1-315L5 (Roswell Park Cancer Institute Human PAC library) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUGCAGCUCUUACAGAAUUUGUCUAGCAGGUUUUCCAGUCUUUACCAGAAAUGCCCCC hit 58 : 8016 8077 (fwd) 30.50 bits :::::::::::::::::::::::::::::::::::<<<<<<.<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucuc.ucuCUGUaGGagggagac 59 AGUGUU CAGCUCUU A+AAUUUGUCUAGCAGG:::UC :+U U UA A+: A::: 8016 --AGUGUUGCAGCUCUUACAGAAUUUGUCUAGCAGGUUUUCcAGUCUUUACCAGA-AAUG 8072 >:::: 60 ccccU 64 CCCC 8073 CCCCC 8077 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9490,sp|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequence. ----isReversed: 1 ----hitSequence: UAAAUGUUACAGCUCUUGUACAAUUUUUCUAGUAGGUUUUCUGGUUUUUAUUGGGAAAUCACAC hit 59 : 153050 152987 (rev) 36.13 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAA UGUUACAGCUCUU UACAAUUU UCUAG AGG U:UCU+ :U U : +GGA:A C 21903 UAAAUGUUACAGCUCUUGUACAAUUUUUCUAGUAGGUUUUCUGGUUUUUAUUGGGAAAUC 21962 :::: 61 cccU 64 C+ 21963 ACAC 21966 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9504,sp|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGAAAACCUUCA hit 60 : 78540 78489 (rev) 27.55 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGC UUUUA+AAUUUGUCUAGCAGGUU:U U G A:ACC 68563 UCAGUGUUACAGC--UUUUAGAAUUUGUCUAGCAGGUUUUC------UGG----AAAACC 68610 :::: 61 cccU 64 +C 68611 UUCA 68614 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9504,sp|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCCAGAAAACCUCC hit 61 : 76935 76875 (rev) 43.36 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGC CUUUUA+AAUUUGUCUAGCAGG:U:UC :: U :: GA:A:C 70168 UCAGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAGGUUUUCUGG--UUUU-CCAGAAAAC 70224 :::: 61 cccU 64 C+C 70225 CUCC 70228 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9826,sp|AC004125.1|AC004125 Homo sapiens Chromosome 16 BAC clone CIT987SK-625P11, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGAUUUUUACCCGGAACCCCUCC hit 62 : 155017 154954 (rev) 49.65 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGGU :UCU: :U U : :GGA: CC 39004 UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGAUUUUUACCCGGAACCC 39063 :::: 61 cccU 64 C+C 39064 CUCC 39067 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9909,sp|AC004226.1|AC004226 Homo sapiens chromosome 5, BAC clone 313n8 (LBNL H146), complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUUGGUUUUUUAGCGAAACCCUCC hit 63 : 14641 14582 (rev) 49.25 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGGUU:U::+U U U A+::A:ACC 94114 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUUGGU-UUUUU-AGCGAAACC 94169 :::: 61 cccU 64 C+C 94170 CUCC 94173 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9962,sp|AC004455.2|AC004455 Homo sapiens PAC clone RP5-1032B10 from 7, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUCUUUACCAGAAAGCCACU hit 64 : 28137 28077 (rev) 47.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UC ::: U ::: GA:A:C 50384 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUC-UUUACCAGAAAGC 50440 :::: 61 cccU 64 C CU 50441 CACU 50444 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9965,sp|AC004458.1|AC004458 Homo sapiens BAC clone CTB-57J11 from 7q21.1-q22, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUAUGGAAUUUGUCUAGCAGGUUUUUUGGUCUUCACAGGAAACUUCCC hit 65 : 101591 101531 (rev) 35.05 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUU U +AAUUUGUCUAGCAG UU:U:U :: U :: G:A:AC 66466 --AGUGUUACAGCUCUUAUGGAAUUUGUCUAGCAGGUUUUUUGGUC-UUCACAGGAAACU 66522 :::: 61 cccU 64 CC 66523 UCCC 66526 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9996,sp|AC004500.1|AC004500 Homo sapiens chromosome 5, P1 clone 1076B9 (LBNL H14), complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCAGAAAGCCCCA hit 66 : 62651 62709 (fwd) 41.25 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 62651 --AGUGUUACAGCUCUU--AGAAUUUGUCUAGCAGGCUUUCUGGUU-UUUGCCAGAAAGC 62705 :::: 61 cccU 64 CCC 62706 CCCA 62709 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #261,sp|AC004870.2|AC004870 Homo sapiens PAC clone RP4-739M23 from 7, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUGCUUAGUGGUCUUUCUGUUUUUUUUUUUUUUUUUGCUGGAAAGCCUCU hit 67 : 123033 123106 (fwd) 28.10 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..........____ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..........GUaG 50 U AGUGUUACAGCUCUUUUA+AAUUUG UAG G :U:UCU ::U U 123033 UUAGUGUUACAGCUCUUUUAGAAUUUGCUUAGUGGUCUUUCUGUUUuuuuuuuuuuUUUU 123092 >>>>>>>>>>:::: 51 GagggagacccccU 64 :: GGA:A: C+CU 123093 GCUGGAAAGCCUCU 123106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #332,sp|AC004943.2|AC004943 Homo sapiens PAC clone RP5-991G20 from 16, complete sequence. ----isReversed: 0 ----hitSequence: UCAGUGUUACAGCUUUUAGAAUUUGUCUAGCAGGCUUUCCGCUCUUCAUUGGAAAGCCCAU hit 68 : 44488 44548 (fwd) 36.94 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGC UUUUA+AAUUUGUCUAGCAGG:U:UC : U : GA:A:C 44488 UCAGUGUUACAGC--UUUUAGAAUUUGUCUAGCAGGCUUUCCGCUC-UUCAUUGGAAAGC 44544 :::: 61 cccU 64 CC+U 44545 CCAU 44548 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #727,sp|AC005516.1|AC005516 Homo sapiens Chromosome 4p16.3 BAC clone 399e10 containing Huntington's Disease gene; exons 1-67, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGCUACAGCUCUUUUGGAAUUUGUCUAGCAGGCUUUCUGGGUUUUGCUGGAAAGCCCUU hit 69 : 193046 193108 (fwd) 45.90 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUG UACAGCUCUUUU +AAUUUGUCUAGCAGG:U:UCU : U U : GGA:A:C 193046 UUAGUGCUACAGCUCUUUUGGAAUUUGUCUAGCAGGCUUUCUGGGU-UUUGCUGGAAAGC 193104 :::: 61 cccU 64 CC U 193105 CCUU 193108 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1000,sp|AC005914.1|AC005914 Homo sapiens chromosome 20, Bac clone 189 (LBNL H135), complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGUUACAACUCUUUUACAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCAGAAAGCCCCC hit 70 : 120505 120567 (fwd) 49.19 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACA CUCUUUUACAAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 120505 UUAGUGUUACAACUCUUUUACAAUUUGUCUAGCAGGCUUUCUGGUU-UUUGCCAGAAAGC 120563 :::: 61 cccU 64 CCC 120564 CCCC 120567 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1063,sp|AC006020.2|AC006020 Homo sapiens PAC clone RP5-1049N15 from 7q31.2-7q32, complete sequence. ----isReversed: 0 ----hitSequence: UGAGUACUACAGCUCUUCUAGAAUUUGCCUAGCAGGUUUUCCUGUCUUUACUAGAAACCCCUC hit 71 : 70674 70736 (fwd) 31.48 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU UACAGCUCUU UA+AAUUUG CUAGCAGGUU:UC ::: U ::: GA:ACC 70674 UGAGUACUACAGCUCUUCUAGAAUUUGCCUAGCAGGUUUUCCUGUC-UUUACUAGAAACC 70732 :::: 61 cccU 64 CC 70733 CCUC 70736 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1176,sp|AC006205.9|AC006205 Homo sapiens 12 PAC RP5-1154L15 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUUUUUACUGAAACCAAACU hit 72 : 21990 22052 (fwd) 38.56 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUA AGCUCUU UA+AAUUUGUCUAGCAG:U U U ::U U :: G A C: 21990 GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUU-UUUACUGAAACCA 22048 :::: 61 cccU 64 CU 22049 AACU 22052 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1238,sp|AC006323.3|AC006323 Homo sapiens clone RP5-1151M5, complete sequence. ----isReversed: 1 ----hitSequence: ACAGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUAUCAGAAAGCCUCC hit 73 : 26342 26282 (rev) 43.55 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A+ GUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UC : :U U : : GA:A:C 59926 --ACAGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUU-UUUAUCAGAAAGC 59982 :::: 61 cccU 64 C+C 59983 CUCC 59986 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1368,sp|AC006512.13|AC006512 Homo sapiens 12 PAC RP3-461F17 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGCUUUUUACCGGAAAGCCCCU hit 74 : 28246 28307 (fwd) 56.42 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UCU:::U U :::GGA:A:C 28246 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGCUUUUUACCGGAAAGC 28303 :::: 61 cccU 64 CCCU 28304 CCCU 28307 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1481,sp|AC007012.1|AC007012 Homo sapiens chromosome 16, clone 185J20, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGUUCUUUCAGAAUUUGUCUAGCAACCUUUCUGGUUUUUGCUAGAAAGUUCUC hit 75 : 17833 17771 (rev) 37.25 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG+UCUUU A+AAUUUGUCUAGCA :U:UC ::U U :: GA:A: 150899 UUAGUGUUACAGUUCUUUCAGAAUUUGUCUAGCAACCUUUCUGGUU-UUUGCUAGAAAGU 150957 :::: 61 cccU 64 C 150958 UCUC 150961 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1506,sp|AC007041.3|AC007041 Homo sapiens BAC clone RP11-327N17 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUUUACCGGAAAACCCAA hit 76 : 10030 9974 (rev) 33.68 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU GCUCUUUUA+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 163368 UCAGU------GCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUU-UUUACCGGAAAAC 163420 :::: 61 cccU 64 CC+ 163421 CCAA 163424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1589,sp|AC007224.5|AC007224 Homo sapiens chromosome 16 clone RP11-475D10, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUAUAGCUCUUUUAAAAUUUGUCUAGCAGGCUUUCCGGUAAAGACUGGAAAGCCCCU hit 77 : 108761 108699 (rev) 43.05 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA AGCUCUUUUA AAUUUGUCUAGCAGG:U:UC :: AG:: GA:A:C 76567 UCAGUGUUAUAGCUCUUUUAAAAUUUGUCUAGCAGGCUUUCCGGUA-AAGACUGGAAAGC 76625 :::: 61 cccU 64 CCCU 76626 CCCU 76629 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1630,sp|AC007283.3|AC007283 Homo sapiens BAC clone RP11-536I18 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUAACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGUUUUUGCCAGAAAGCCCUA hit 78 : 94615 94554 (rev) 39.71 bits :::::::::.::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUA.CAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AGUGUUA CAGCUCUUUUA+AAUUUGUCUAGCAGG:U:U: :::U U ::: :A:A: 32747 --AGUGUUAaCAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGUU-UUUGCCAGAAAG 32803 >:::: 60 ccccU 64 CCC 32804 CCCUA 32808 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1685,sp|AC007374.6|AC007374 Homo sapiens chromosome 14 clone RP11-325L17 map 14q31, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAACUCUUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUACUGAAAAGCCCCA hit 79 : 158213 158153 (rev) 39.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACA CUCUUUUACAAUUUGUCUAG AGG:U:U U :: U :: G A:A:C 32353 --AGUGUUACAACUCUUUUACAAUUUGUCUAGAAGGUUUUCUGGUC-UUUACUGAAAAGC 32409 :::: 61 cccU 64 CCC 32410 CCCA 32413 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1732,sp|AC007450.1|AC007450 Homo sapiens 12 BAC RP11-434C1 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUCUGUCUAGCAGGUUUUCCAGUCUUCACUGGAAAGCCCUU hit 80 : 148895 148835 (rev) 41.29 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAU UGUCUAGCAGG:U:UC ::: U ::: GA:A:C 61885 --AGUGUUACAGCUCUUUUAGAAUCUGUCUAGCAGGUUUUCCAGUC-UUCACUGGAAAGC 61941 :::: 61 cccU 64 CC U 61942 CCUU 61945 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1786,sp|AC007559.3|AC007559 Homo sapiens BAC clone RP11-364J6 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUCCAGCUCUUUUAGAAUCUGUCUAGCAGGCUUUCUGGUUUUUACAGGAAGGCCCCU hit 81 : 53064 53124 (fwd) 44.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUU+CAGCUCUUUUA+AAU UGUCUAGCAGG: :UCU ::U U :: GGA: :C 53064 --AGUGUUCCAGCUCUUUUAGAAUCUGUCUAGCAGGCUUUCUGGUU-UUUACAGGAAGGC 53120 :::: 61 cccU 64 CCCU 53121 CCCU 53124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1794,sp|AC007567.2|AC007567 Homo sapiens BAC clone CTB-36G2 from 7q31, complete sequence. ----isReversed: 0 ----hitSequence: UAAGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUUAGAAAACCCCCC hit 82 : 65482 65545 (fwd) 49.10 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUU+CAGCUCUUU A+AAUUUGUCUAGCAGGUU:U U :U U+ : G A:ACC 65482 UAAGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUUAGAAAACC 65541 :::: 61 cccU 64 CCC 65542 CCCC 65545 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1982,sp|AC008026.7|AC008026 Homo sapiens chromosome 17, clone RP11-464D20, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGCCCCUA hit 83 : 170610 170546 (rev) 38.28 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 U AGUGUUACAGCUCUUUUA+AA UUUGUCUAGCAGGU :UC +:: U ::+ GA: C 49575 UUAGUGUUACAGCUCUUUUAGAAuUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGC 49634 >:::: 60 ccccU 64 CCC 49635 CCCUA 49639 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2148,sp|AC008444.4|AC008444 Homo sapiens chromosome 5 clone CTC-338N15, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUCACCAUAAAAUGCCC hit 84 : 58847 58787 (rev) 38.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUA+AAUUUGUCUAGCAG U:U :::U U ::: A:A 48707 --AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUU-UUCACCAUAAAAU 48763 :::: 61 cccU 64 CC 48764 GCCC 48767 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2305,sp|AC008645.5|AC008645 Homo sapiens chromosome 5 clone CTB-181L5, complete sequence. ----isReversed: 1 ----hitSequence: UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUUUUACAAAAAGAAGAAGAAAUCCACCCC hit 85 : 44962 44889 (rev) 27.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..........____ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..........GUaG 50 U AG GUUAC GCUCUUUU +AAUUUGUCUAGCAG:U: U ++ U G AG 59429 UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUuuuacaaaaaGAAG 59488 >>>>>>>>>>:::: 51 GagggagacccccU 64 ++ A :C:CCC 59489 AAGAAAUCCACCCC 59502 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2685,sp|AC009137.8|AC009137 Homo sapiens chromosome 16 clone RP11-521L9, complete sequence. ----isReversed: 1 ----hitSequence: UGAGUGUUACAGCUCUAUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUCACUGGAAAGCACCC hit 86 : 64049 63987 (rev) 42.85 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCU UUA+AAUUUGUCUAGCAGG:U:UCU :: U :: GGA:A:C 110703 UGAGUGUUACAGCUCUAUUAGAAUUUGUCUAGCAGGUUUUCUGGUC-UUCACUGGAAAGC 110761 :::: 61 cccU 64 CC 110762 ACCC 110765 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2706,sp|AC009167.9|AC009167 Homo sapiens chromosome 16 clone RP11-82O18, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUAUCAGAAAGCCUCC hit 87 : 78044 77982 (rev) 36.02 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU UUACA CUC UUUACAAUUUGUCUAG AGG:U:UC : : U : : GA:A:C 115590 UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUC-UUUAUCAGAAAGC 115648 :::: 61 cccU 64 C+C 115649 CUCC 115652 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2744,sp|AC009244.25|AC009244 Homo sapiens chromosome 7 clone RP11-305M3, complete sequence. ----isReversed: 0 ----hitSequence: UCAGUGUUACAGGUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUACCAGAAAACCCCU hit 88 : 39314 39376 (fwd) 48.68 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG UCUUUUA+AAUUUGUCUAGCAGG:U:UC ::: U ::: GA:A:C 39314 UCAGUGUUACAGGUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUC-UUUACCAGAAAAC 39372 :::: 61 cccU 64 CCCU 39373 CCCU 39376 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2850,sp|AC009476.3|AC009476 Homo sapiens BAC clone RP11-207O14 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUAGAAUUUGUUUAGCAGGCUUUCUGGUUUUUACUGGAAAGCCCCU hit 89 : 156778 156716 (rev) 55.61 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUA+AAUUUGU UAGCAGG:U:UCU ::U U :: GGA:A:C 27629 UAAGUGUUACAGCUCUUUUAGAAUUUGUUUAGCAGGCUUUCUGGUU-UUUACUGGAAAGC 27687 :::: 61 cccU 64 CCCU 27688 CCCU 27691 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2955,sp|AC009772.14|AC009772 Homo sapiens 12 BAC RP11-372P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUUUUUAAAAGAAUUUAUAUAACAGGUUUUCAGUUUUCACUAGAAAACCACU hit 90 : 47160 47097 (rev) 27.52 bits ::::::::::::::::::::..:::::::::::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUACAGCUCUUUUA..cAAUUUGUCUAGCAGguucucucuCUGUaGGagggaga 58 UAAGUGUUACAGCU UUU A +AAUUU U UA CAGG:U:UC: ::U U+ :: :GA:A 37841 UAAGUGUUACAGCUUUUUAAaaGAAUUUAUAUAACAGGUUUUCAGUUU-UC-ACUAGAAA 37898 >>:::: 59 cccccU 64 :CC CU 37899 ACCACU 37904 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2974,sp|AC009808.8|AC009808 Homo sapiens chromosome 8, clone RP11-138K8, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUGUUGCAGCUCUUUUAGAAUUGAUCUAGCAGGUCUUCGGGUUUUUAACUGGAAACCUUCC hit 91 : 93184 93121 (rev) 35.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUU CAGCUCUUUUA+AAUU UCUAGCAGGU :UC ::U U :: GA: CC 80622 AAAGUGUUGCAGCUCUUUUAGAAUUGAUCUAGCAGGUCUUCGGGUUUUUAACUGGAAACC 80681 :::: 61 cccU 64 +C 80682 UUCC 80685 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2976,sp|AC009812.17|AC009812 Homo sapiens chromosome 8, clone RP11-48B3, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUUCCAGUGACCAGAAAAUCCUCU hit 92 : 13495 13435 (rev) 36.38 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUU GUCUAG AGG U:U C U A G A:A C 141911 GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUU-CCAGU-GACCAGA-AAAUC 141967 :::: 61 cccU 64 C+CU 141968 CUCU 141971 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2984,sp|AC009871.21|AC009871 Homo sapiens chromosome , clone RP11-86O7, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUUCCAGUGACCAGAAAAUCCUCU hit 93 : 41991 41931 (rev) 36.38 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUU GUCUAG AGG U:U C U A G A:A C 40229 GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUU-CCAGU-GACCAGA-AAAUC 40285 :::: 61 cccU 64 C+CU 40286 CUCU 40289 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2992,sp|AC009898.6|AC009898 Homo sapiens chromosome 8, clone RP11-138H14, complete sequence. ----isReversed: 0 ----hitSequence: ACUGUUACAGUUCUUUCAGAAUCUGUCUAGCAAAUUUUCUGGCUUUUCCAGGAAAAUCCCC hit 94 : 120297 120357 (fwd) 35.75 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A+UGUUACAG+UCUUU A+AAU UGUCUAGCA :U:UCU : U U : GGA:A: 120297 --ACUGUUACAGUUCUUUCAGAAUCUGUCUAGCAAAUUUUCUGGCU-UUUCCAGGAAAAU 120353 :::: 61 cccU 64 CCC 120354 CCCC 120357 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3438,sp|AC010655.7|AC010655 Homo sapiens chromosome 7 clone RP11-155G14, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUUUUUGCCGGAAGGCCUCC hit 95 : 13831 13891 (fwd) 44.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUA+AAUUUG CUAGCAGG: :UCU:::U U :::GGA: :C 13831 --AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUU-UUUGCCGGAAGGC 13887 :::: 61 cccU 64 C+C 13888 CUCC 13891 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3438,sp|AC010655.7|AC010655 Homo sapiens chromosome 7 clone RP11-155G14, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGCGCUUUGAGAAUUUGUCUAGCAGGCCUUUGGGUCUUUACUGGAAAACCCCUAA hit 96 : 113260 113196 (rev) 36.07 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_.____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU.GUaGGagggagac 59 U AGUGUUACAGC CUUU A+AAUUUGUCUAGCAGG+::U:++:: UA ::++:A::+ 51831 UUAGUGUUACAGCGCUUUGAGAAUUUGUCUAGCAGGCCUUUGGGUCuUUACUGGAAAACC 51890 >:::: 60 ccccU 64 CC++ 51891 CCUAA 51895 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3475,sp|AC010748.5|AC010748 Homo sapiens BAC clone CTD-2532L16 from 16, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUAGGACAGCUCUUUUAGAAUUUGUCUAACUGGUUCCUAGUCUUCACUGGAAGCACCCUCCACUCCU hit 97 : 51866 51797 (rev) 26.20 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_......____>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU......GUaGGagg 54 AAGU ACAGCUCUUUUA+AAUUUGUCUA C GG: :::::U U G AG A:: 93594 AAAGUAGGACAGCUCUUUUAGAAUUUGUCUAACUGGUUCCUAGUCUucacugGAAGCACC 93653 >>>>>>:::: 55 gagacccccU 64 ::: :C CCU 93654 CUCCACUCCU 93663 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3519,sp|AC010894.10|AC010894 Homo sapiens BAC clone RP11-483E17 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUGAGAAUUUGUCUAGCAGGCUUUCCAGGGUUUUGCUGGAAAGCCUCU hit 98 : 89487 89424 (rev) 45.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUU A+AAUUUGUCUAGCAGG:U:UC :: U :: GA:A:C 92177 GAAGUGUUACAGCUCUUUGAGAAUUUGUCUAGCAGGCUUUCCAGGGUUUUGCUGGAAAGC 92236 :::: 61 cccU 64 C+CU 92237 CUCU 92240 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3568,sp|AC011028.11|AC011028 Homo sapiens chromosome 8, clone RP11-118J17, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCCAGUAUUCACUGGAAAGCUCCA hit 99 : 84015 84075 (fwd) 38.32 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCA G:U:UC U U GA:A:C 84015 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCA-GGUUUCCCAGUAUUCACUGGAAAGC 84071 :::: 61 cccU 64 CC 84072 UCCA 84075 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3746,sp|AC011433.5|AC011433 Homo sapiens chromosome 5 clone P1_988H11, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUAUAGCUCUUUUAGUUUGUCUAGCAGGUUUUUUGGAUUUUACCAGAAAGCCUGC hit 100 : 43659 43601 (rev) 33.89 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUA AGCUCUUUUA+ UUUGUCUAGCAGG:U:U: :::U U ::: :A:A:C 31796 --AGUGUUAUAGCUCUUUUAG--UUUGUCUAGCAGGUUUUUUGGAU-UUUACCAGAAAGC 31850 :::: 61 cccU 64 C+ 31851 CUGC 31854 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3767,sp|AC011461.5|AC011461 Homo sapiens chromosome 19 clone CTC-429L19, complete sequence. ----isReversed: 1 ----hitSequence: UUACAGCUCUUUUAGAAUUUGUCUCAGGUUUUCUGGUUCUCACUGGAAAACCCCC hit 101 : 94997 94943 (rev) 30.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 UUACAGCUCUUUUA+AAUUUGUCU CAGG:U:UCU :: U+ :: GGA:A: 5684 ------UUACAGCUCUUUUAGAAUUUGUCU--CAGGUUUUCUGGU--UCUcACUGGAAAA 5733 >:::: 60 ccccU 64 CCCC 5734 CCCCC 5738 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3781,sp|AC011475.6|AC011475 Homo sapiens chromosome 19 clone CTC-539A10, complete sequence. ----isReversed: 0 ----hitSequence: UUACAGCUCUUUUAGAAUUUGUCUCAGGUUUUCUGGUUCUCACUGGAAAACCCCC hit 102 : 176839 176893 (fwd) 30.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 UUACAGCUCUUUUA+AAUUUGUCU CAGG:U:UCU :: U+ :: GGA:A: 176839 ------UUACAGCUCUUUUAGAAUUUGUCU--CAGGUUUUCUGGU--UCUcACUGGAAAA 176888 >:::: 60 ccccU 64 CCCC 176889 CCCCC 176893 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3894,sp|AC011709.11|AC011709 Homo sapiens chromosome 18, clone RP11-500H12, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUCUUUAUCAGAAACCACCU hit 103 : 168367 168427 (fwd) 33.70 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUAC AUUU UCUAGCA GUU:UC : : U : : GA:ACC 168367 --AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUC-UUUAUCAGAAACC 168423 :::: 61 cccU 64 CCU 168424 ACCU 168427 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4107,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUGUUUUAGAAUUGUCUAGCAGUCUUUCCGGGUUUUGUCAGAAAGGCCCU hit 104 : 157927 157866 (rev) 41.88 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCU UUUUA+AA UUGUCUAGCAG :U:UC : U U : GA:A: 29922 GAAGUGUUACAGCUGUUUUAGAA-UUGUCUAGCAGUCUUUCCGGGU-UUUGUCAGAAAGG 29979 :::: 61 cccU 64 CCCU 29980 CCCU 29983 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4179,sp|AC012508.10|AC012508 Homo sapiens BAC clone RP11-521O16 from 2, complete sequence. ----isReversed: 0 ----hitSequence: UUAAGAACUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUCUACUGGAAGCUUCUU hit 105 : 41962 42019 (fwd) 26.43 bits ::::::::::.:::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUAC.AGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 UUA+ A CUCUUUUA+AAUUUGUCUAGCAG U :UCU ::U U+ :: GGA: C 41962 ------UUAAgAACUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUU-UCUACUGGAAGC 42014 >:::: 60 ccccU 64 C U 42015 UUCUU 42019 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4234,sp|AC012626.8|AC012626 Homo sapiens chromosome 16 clone CTD-2118O12, complete sequence. ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCCAUAAAAAAAAGUAU hit 106 : 134696 134751 (fwd) 36.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUA+AAUUUGUCUAGC G::U:U UA A:A:: 134696 UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCC-A---UAA----AAAAAA 134747 :::: 61 cccU 64 ++U 134748 GUAU 134751 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4307,sp|AC013414.7|AC013414 Homo sapiens BAC clone RP11-560I3 from 2, complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUCAUGGCUCUUUUAGAAUUUGUACAGCAGGUUUUCUGGUUUUUGCCGGAAAGCACCC hit 107 : 13532 13594 (fwd) 30.83 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGU A GCUCUUUUA+AAUUUGU AGCAGG:U:UCU:::U U :::GGA:A:C 13532 CAAGUGUCAUGGCUCUUUUAGAAUUUGUACAGCAGGUUUUCUGGUU-UUUGCCGGAAAGC 13590 :::: 61 cccU 64 CC 13591 ACCC 13594 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4572,sp|AC016240.23|AC016240 Homo sapiens chromosome 8, clone RP11-27N21, complete sequence. ----isReversed: 0 ----hitSequence: AAAGUGUUAACAGCUCUUGCAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUUCUGGAAAGCCUCA hit 108 : 18817 18880 (fwd) 37.52 bits :::::::::.::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUA.CAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AAGUGUUA CAGCUCUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A: 18817 AAAGUGUUAaCAGCUCUUGCAGAAUUUGUCUAGCAGGCUUUCCAGUU-UUUUCUGGAAAG 18875 >:::: 60 ccccU 64 CC+C 18876 CCUCA 18880 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4651,sp|AC016598.5|AC016598 Homo sapiens chromosome 5 clone CTD-2050E21, complete sequence. ----isReversed: 0 ----hitSequence: UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUUUUACAAAAAGAAGAAGAAAUCCACCCC hit 109 : 76452 76525 (fwd) 27.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..........____ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..........GUaG 50 U AG GUUAC GCUCUUUU +AAUUUGUCUAGCAG:U: U ++ U G AG 76452 UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUuuuacaaaaaGAAG 76511 >>>>>>>>>>:::: 51 GagggagacccccU 64 ++ A :C:CCC 76512 AAGAAAUCCACCCC 76525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4750,sp|AC016753.9|AC016753 Homo sapiens BAC clone RP11-513O19 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UUAAUGUUACAGCUCUUUUAGUAUUCGUCUAGCAGCCUUUCCAGUUUUUACCAGAAAGCCCCC hit 110 : 8937 8875 (rev) 39.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGUUACAGCUCUUUUA++AUU GUCUAGCAG::U:UC :::U U ::: GA:A:: 166758 UUAAUGUUACAGCUCUUUUAGUAUUCGUCUAGCAGCCUUUCCAGUU-UUUACCAGAAAGC 166816 :::: 61 cccU 64 CCC 166817 CCCC 166820 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4963,sp|AC018523.9|AC018523 Homo sapiens chromosome , clone RP11-140L24, complete sequence. ----isReversed: 1 ----hitSequence: UUAAUGUCAUAGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCUGGUUUUUGCCGGAAAGCCCUC hit 111 : 124970 124908 (rev) 35.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGU A AGCUCUUUUA AAUUUGU UAGCAGG:U:UCU:::U U :::GGA:A:C 41538 UUAAUGUCAUAGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCUGGUU-UUUGCCGGAAAGC 41596 :::: 61 cccU 64 CC 41597 CCUC 41600 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4992,sp|AC018635.10|AC018635 Homo sapiens chromosome 7 clone RP11-62J1, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUUUUUGCCGGAAGGCCUCC hit 112 : 122474 122534 (fwd) 44.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUA+AAUUUG CUAGCAGG: :UCU:::U U :::GGA: :C 122474 --AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUU-UUUGCCGGAAGGC 122530 :::: 61 cccU 64 C+C 122531 CUCC 122534 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4995,sp|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B21, complete sequence. ----isReversed: 0 ----hitSequence: UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUGUGGUGGCUCACACCUGU hit 113 : 77880 77940 (fwd) 38.08 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 UAAGUGUUAC GCUCUUUUA+AAUUUGUCUAGCAGG ::: ::: U G ::: ::: 77880 UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUG---UGGu-GGCUCACA 77935 >:::: 60 ccccU 64 CC+ U 77936 CCUGU 77940 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5045,sp|AC018717.11|AC018717 Homo sapiens BAC clone RP11-505H14 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACCGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCCAAUUUUUGCCAGAAAGCUCCC hit 114 : 129124 129184 (fwd) 35.62 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUAC GCUCUUUUA AAUUUGU UAGCAGG:U:UC : :U U : : GA:A:C 129124 --AGUGUUACCGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCCAAUU-UUUGCCAGAAAGC 129180 :::: 61 cccU 64 CC 129181 UCCC 129184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5167,sp|AC019047.7|AC019047 Homo sapiens BAC clone RP11-83N2 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGUGGUGCAGCUCUUUUAGAAUUUGUCCAGCAGGUUUUCUGGUUCUCACCAGAAAACGCCA hit 115 : 68002 68062 (fwd) 30.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 GUG U CAGCUCUUUUA+AAUUUGUC AGCAGG:U:UC ::: U+ ::: GA:A: 68002 --GGUGGUGCAGCUCUUUUAGAAUUUGUCCAGCAGGUUUUCUGGU--UCUcACCAGAAAA 68057 >:::: 60 ccccU 64 C CC 68058 CGCCA 68062 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5455,sp|AC021054.28|AC021054 Homo sapiens 12 BAC RP11-218M22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUUUUUACUGAAACCAAACU hit 116 : 142740 142802 (fwd) 38.56 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUA AGCUCUU UA+AAUUUGUCUAGCAG:U U U ::U U :: G A C: 142740 GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUU-UUUACUGAAACCA 142798 :::: 61 cccU 64 CU 142799 AACU 142802 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5772,sp|AC022291.27|AC022291 Homo sapiens 3 BAC RP11-71O21 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUCUUGCGGGAAAGUCCCC hit 117 : 12097 12157 (fwd) 40.03 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 A UGUUACAGCUCUUUUA+AAUUUGUCUAGCAG :U:UC +:: U+ ::+ GA:A: 12097 --AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGU--UCUuGCGGGAAAG 12152 >:::: 60 ccccU 64 CCC 12153 UCCCC 12157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5832,sp|AC022429.7|AC022429 Homo sapiens chromosome 10 clone CTD-2374D18, complete sequence. ----isReversed: 0 ----hitSequence: UCUGUGUUACAGUUCGUUUUGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACCAGAACUUAAU hit 118 : 48803 48864 (fwd) 30.59 bits ::::::::::::::::::::::::::::::::::.:<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA.GguucucucuCUGUaGGagggagac 59 U +GUGUUACAG+UC UUU +AAUUUGUCUAGCA G:UU:::::U U A:::::AC 48803 UCUGUGUUACAGUUCGUUUUGAAUUUGUCUAGCAgGUUUUCUGGU--UUUU-ACCAGAAC 48859 >:::: 60 ccccU 64 : +U 48860 UUAAU 48864 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6034,sp|AC023270.7|AC023270 Homo sapiens BAC clone RP11-88L24 from 2, complete sequence. ----isReversed: 1 ----hitSequence: CAUGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUGAAAAUUAAACUCAA hit 119 : 89935 89876 (rev) 39.67 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A+GUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U: U:UG G:A :A:C 32559 CAUGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUU----UCUGGUGAAAAUUAAAC 32614 :::: 61 cccU 64 C+ 32615 UCAA 32618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6053,sp|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUCUUCACUGGAAGACCACU hit 120 : 69892 69830 (rev) 41.05 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCU UUA+AAUUU UCUAGCAGG: :UCU :: U :: GGA: :C 116860 UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUC-UUCACUGGAAGAC 116918 :::: 61 cccU 64 C CU 116919 CACU 116922 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6160,sp|AC023891.28|AC023891 Homo sapiens 3 BAC RP13-81O8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGUUCUUUUAGAAUUUAUCUAGCAGGCUUUCUGCUUUUUGCUGGGAAGCCCAU hit 121 : 59462 59522 (fwd) 46.18 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAG+UCUUUUA+AAUUU UCUAGCAGG:U: CU :U U : GG :A:C 59462 --AGUGUUACAGUUCUUUUAGAAUUUAUCUAGCAGGCUUUCUGCUU-UUUGCUGGGAAGC 59518 :::: 61 cccU 64 CC+U 59519 CCAU 59522 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6239,sp|AC024221.23|AC024221 Homo sapiens 3 BAC RP11-227J5 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AAAAUGUUACAGCUCUUUUAGAAUUUAUCUAGCAGGUUUUCUGGUUACUAUAAGAGAAGGGGGAACCACCAC hit 122 : 117199 117128 (rev) 36.98 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..........____ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..........GUaG 50 AA UGUUACAGCUCUUUUA+AAUUU UCUAGCAG:U :UCU+: U G AG 15755 AAAAUGUUACAGCUCUUUUAGAAUUUAUCUAGCAGGUUUUCUGG-UuacuauaagaGAAG 15813 >>>>>>>>>>:::: 51 GagggagacccccU 64 :+GGA: C:CC+ 15814 -GGGGAACCACCAC 15826 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6256,sp|AC024270.6|AC024270 Homo sapiens chromosome 15, clone RP11-382A20, complete sequence. ----isReversed: 0 ----hitSequence: CAAUUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUUUUUUUUGUUUGUUUGUUUUU hit 123 : 77896 77958 (fwd) 31.28 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AA UGUUACAGCUCUUUUA+AAUUUGUCUAGCAG :: C : :U U : : G :: 77896 CAAUUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUUUUU-UUUGUUUGUUUGU 77954 :::: 61 cccU 64 + U 77955 UUUU 77958 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6257,sp|AC024288.9|AC024288 Homo sapiens, clone RP11-23B5, complete sequence. ----isReversed: 1 ----hitSequence: UGAGUGUUACAGCUCUUUCAGAACUCUUCUAGCAGUUUUUCCAGCUUUUACCAGAAUCUCUCC hit 124 : 122392 122330 (rev) 32.15 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUU A+AA U UCUAGCAG:U::UC :::U U ::: GA::C: 47149 UGAGUGUUACAGCUCUUUCAGAACUCUUCUAGCAGUUUUUCCAGCU-UUUACCAGAAUCU 47207 :::: 61 cccU 64 C+C 47208 CUCC 47211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6339,sp|AC024909.28|AC024909 Homo sapiens 12 BAC RP11-823E8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GAAGUGUUACAGCUCUUUUAAAAUUUAUCUAACAGGUUUUCUGUUUUUUAACUAGAAAACUCCC hit 125 : 71388 71451 (fwd) 38.54 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA AAUUU UCUA CAGG:U:UC ::U U :: GA:A:C 71388 GAAGUGUUACAGCUCUUUUAAAAUUUAUCUAACAGGUUUUCUGUUUUUUAACUAGAAAAC 71447 :::: 61 cccU 64 CC 71448 UCCC 71451 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6345,sp|AC024937.21|AC024937 Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAUGCUUUCUAGUUUUUGCCAGAAAGCCCAU hit 126 : 127461 127523 (fwd) 50.46 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCA G:U:UC :::U U ::: GA:A:C 127461 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAUGCUUUCUAGUU-UUUGCCAGAAAGC 127519 :::: 61 cccU 64 CC+U 127520 CCAU 127523 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6461,sp|AC025423.32|AC025423 Homo sapiens 12 BAC RP11-611O2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAAAAUUUGUCUAAUAGGCUUUCUGGUUUUUGCUGGAAAGCCCCC hit 127 : 37556 37496 (rev) 42.65 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA AAUUUGUCUA AGG:U:UCU ::U U :: GGA:A:C 113024 --AGUGUUACAGCUCUUUUAAAAUUUGUCUAAUAGGCUUUCUGGUU-UUUGCUGGAAAGC 113080 :::: 61 cccU 64 CCC 113081 CCCC 113084 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6482,sp|AC025448.6|AC025448 Homo sapiens chromosome 5 clone CTD-2113L7, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUGCAGCUCCUUUAGAAUUUGUCUAGCAGGUUUUAUAGGUUUUACCAGAAAACUUCC hit 128 : 108172 108110 (rev) 45.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUU CAGCUC UUUA+AAUUUGUCUAGCAGG:U:U: :: U U :: :A:A:C 56019 UAAGUGUUGCAGCUCCUUUAGAAUUUGUCUAGCAGGUUUUAUAGGU-UUUACCAGAAAAC 56077 :::: 61 cccU 64 +C 56078 UUCC 56081 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6483,sp|AC025449.6|AC025449 Homo sapiens chromosome 5 clone CTD-2124B8, complete sequence. ----isReversed: 0 ----hitSequence: UCAGUGUUACGGCUGUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACGAGACUCCCCCA hit 129 : 179991 180053 (fwd) 39.31 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUAC GCU UUUUA+AAUUUGUCUAGCAGGU: UC +::U U ::+ GA :CC 179991 UCAGUGUUACGGCUGUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUU-UUUACGAGACUCC 180049 :::: 61 cccU 64 CCC 180050 CCCA 180053 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6510,sp|AC025518.8|AC025518 Homo sapiens chromosome 17, clone RP11-713H12, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUUUCUGGUGGAAAGCUCCC hit 130 : 91242 91180 (rev) 52.60 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU ::U U+ :: GGA:A:C 85114 AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUU-UCUGGUGGAAAGC 85172 :::: 61 cccU 64 CC 85173 UCCC 85176 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6529,sp|AC025574.19|AC025574 Homo sapiens 12 BAC RP11-348M3 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGGAUUUGUCUAGCAGGCUUUCAGGUUUUUGCCAGAAACCACCC hit 131 : 39484 39546 (fwd) 48.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+ AUUUGUCUAGCAGG+U:UC::::U U ::::GA:A+C 39484 CAAGUGUUACAGCUCUUUUAGGAUUUGUCUAGCAGGCUUUCAGGUU-UUUGCCAGAAACC 39542 :::: 61 cccU 64 CC 39543 ACCC 39546 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6534,sp|AC025580.8|AC025580 Homo sapiens chromosome 15 clone RP11-519G16 map 15q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGCUUUCUGGUUUUUGCUGGAAAGCCCCC hit 132 : 113015 112953 (rev) 50.34 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUC AGCAGG:U:UCU ::U U :: GGA:A:C 87789 GAAGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGCUUUCUGGUU-UUUGCUGGAAAGC 87847 :::: 61 cccU 64 CCC 87848 CCCC 87851 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6636,sp|AC026130.15|AC026130 Homo sapiens chromosome 17, clone RP11-801J18, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUUUCUGGUGGAAAGCUCCC hit 133 : 27478 27416 (rev) 52.60 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU ::U U+ :: GGA:A:C 155432 AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUU-UCUGGUGGAAAGC 155490 :::: 61 cccU 64 CC 155491 UCCC 155494 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6679,sp|AC026250.16|AC026250 Homo sapiens chromosome 11, clone RP11-540A21, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGACUUUCCAGUUUUUGCCAGAAAGCCCAC hit 134 : 31328 31388 (fwd) 45.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG :U:UC :::U U ::: GA:A: 31328 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGACUUUCCAGUU-UUUGCCAGAAAGC 31384 :::: 61 cccU 64 CC+ 31385 CCAC 31388 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6760,sp|AC026424.5|AC026424 Homo sapiens chromosome 5 clone CTD-2174D2, complete sequence. ----isReversed: 0 ----hitSequence: UGAAUGUUACAGUUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUCUUCACCAGAAAGCUCCC hit 135 : 100557 100618 (fwd) 29.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGUUACAG U UUU A+AAUUUGUCUA CAGG:U:UC ::: U ::: GA:A:C 100557 UGAAUGUUACAG-UUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUC-UUCACCAGAAAGC 100614 :::: 61 cccU 64 CC 100615 UCCC 100618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6855,sp|AC026732.5|AC026732 Homo sapiens chromosome 5 clone CTD-2303L1, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGUUACAGUUGUUUUAGAACUUGUCUAUCAGGCUUCCCAAUUUUUGCUGGAAAGCCCCU hit 136 : 35983 36045 (fwd) 32.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG+U UUUUA+AA UUGUCUA CAGG:U::C : :U U : : G::A:C 35983 UUAGUGUUACAGUUGUUUUAGAACUUGUCUAUCAGGCUUCCCAAUU-UUUGCUGGAAAGC 36041 :::: 61 cccU 64 CCCU 36042 CCCU 36045 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6896,sp|AC026794.5|AC026794 Homo sapiens chromosome 5 clone CTD-2276B5, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCAGAAAGCCCCA hit 137 : 84116 84058 (rev) 41.25 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 42795 --AGUGUUACAGCUCUU--AGAAUUUGUCUAGCAGGCUUUCUGGUU-UUUGCCAGAAAGC 42849 :::: 61 cccU 64 CCC 42850 CCCA 42853 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6969,sp|AC027176.22|AC027176 Homo sapiens chromosome 15, clone RP11-493E3, complete sequence. ----isReversed: 0 ----hitSequence: UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUUUGUACCAGAAAACCCCU hit 138 : 57790 57846 (fwd) 33.49 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAG U UUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 57790 ------UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUU-UGUACCAGAAAAC 57842 :::: 61 cccU 64 CCCU 57843 CCCU 57846 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7327,sp|AC053481.13|AC053481 Homo sapiens chromosome 17, clone RP11-51L5, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGCCCCUA hit 139 : 12378 12314 (rev) 38.28 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 U AGUGUUACAGCUCUUUUA+AA UUUGUCUAGCAGGU :UC +:: U ::+ GA: C 163858 UUAGUGUUACAGCUCUUUUAGAAuUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGC 163917 >:::: 60 ccccU 64 CCC 163918 CCCUA 163922 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7374,sp|AC055839.9|AC055839 Homo sapiens chromosome 17, clone RP11-807C20, complete sequence. ----isReversed: 1 ----hitSequence: AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUACCAGAAAACCCCU hit 140 : 27195 27135 (rev) 41.09 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU U ACAGCUCUUUUA+AAUUUGUCUAGCAGG U:UC :::U U ::: GA:A C 149536 --AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUU-UUUACCAGAAAAC 149592 :::: 61 cccU 64 CCCU 149593 CCCU 149596 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7445,sp|AC062037.5|AC062037 Homo sapiens BAC clone RP11-717A5 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUCACAGCUCUUCUACAAUUUGUCUAGCAGGUUUUCUGGUUCUUCGUGAGAACCCCU hit 141 : 25859 25800 (rev) 40.78 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGU ACAGCUCUU UACAAUUUGUCUAGCAGG:U UC +: U U+ :+ GA A:C 61529 --AGUGUCACAGCUCUUCUACAAUUUGUCUAGCAGGUUUUCUGG-U-UCUUCGUGAGAAC 61584 :::: 61 cccU 64 CCCU 61585 CCCU 61588 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7925,sp|AC069175.8|AC069175 Homo sapiens chromosome 11, clone RP11-995N21, complete sequence. ----isReversed: 0 ----hitSequence: AGUGGUGCAGCCCUUUUAGAAUUUUUCUGGCAGGUUUUUUGGUUUUCACCAGAAAACAUCCC hit 142 : 45137 45198 (fwd) 26.27 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUG U CAGC CUUUUA+AAUUU UCU GCAG:UU:U:U ::U U+ :: G:A:AC: 45137 --AGUGGUGCAGCCCUUUUAGAAUUUUUCUGGCAGGUUUUUUGGUUUUCACCAGAAAACA 45194 :::: 61 cccU 64 CC 45195 UCCC 45198 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8034,sp|AC069503.25|AC069503 Homo sapiens 12 BAC RP11-87C12 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUAUAGCUCUAAGAAUUUGUCUACCAGGUUUUCUGGUCAUCGCUGGAAACACCCU hit 143 : 149631 149573 (rev) 26.70 bits :::::::::::::::::.::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUU.UUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AGUGUUA AGCUCU A+AAUUUGUCUA CAG:UU:UCU :: :: GGA:AC 36950 --AGUGUUAUAGCUCU-a--AGAAUUUGUCUACCAGGUUUUCUGGUC-AUCGCUGGAAAC 37003 >:::: 60 ccccU 64 :CCCU 37004 ACCCU 37008 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8124,sp|AC073115.5|AC073115 Homo sapiens BAC clone RP11-571N3 from 7, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUAGAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGGUUUUGCUGGAAAGCAAUC hit 144 : 24709 24647 (rev) 42.38 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUA AGCUCUUUUA+AAUUUGUCUAGCAGG:U:U: :: U U :: :A:A:C 142623 UAAGUGUUAGAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGGU-UUUGCUGGAAAGC 142681 :::: 61 cccU 64 142682 AAUC 142685 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8246,sp|AC073370.7|AC073370 Homo sapiens chromosome 10 clone RP11-472G21, complete sequence. ----isReversed: 1 ----hitSequence: UUACUGUUAUGUCUUUUAGAAUUUGUCUAGAAGGCUUUCUGGUUUUUACUGGAAAGCCCCC hit 145 : 13312 13252 (rev) 36.66 bits :::::::::..::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUA..CAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggaga 58 U A+UGUUA UCUUUUA+AAUUUGUCUAG AGG:U:UCU ::U U :: GGA:A 164942 UUACUGUUAug----UCUUUUAGAAUUUGUCUAGAAGGCUUUCUGGUU-UUUACUGGAAA 164996 >>:::: 59 cccccU 64 :CCCC 164997 GCCCCC 165002 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8557,sp|AC074363.3|AC074363 Homo sapiens BAC clone RP11-31F22 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUAUUAGGCCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUCCACCAGAAAACCAUA hit 146 : 148009 147947 (rev) 31.33 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU UUA CUCUUUUA+AAUUUGUCUAGCAGG:U:UC :::U U+ ::: GA:A:C 3317 UUAGUAUUAGGCCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUU-UCCACCAGAAAAC 3375 :::: 61 cccU 64 C 3376 CAUA 3379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8605,sp|AC078817.18|AC078817 Homo sapiens 12 BAC RP11-244J10 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AAUAUGUUACAGCUCUUUUAGAAUUUGUCUAGCCAGCUUUCCGGUUUUUGCCCCCCAAAAAAGA hit 147 : 18926 18863 (rev) 31.80 bits :::::::::::::::::::::::::::::::::.::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGC.AGguucucucuCUGUaGGagggagac 59 A+ UGUUACAGCUCUUUUA+AAUUUGUCUAGC AG :U:: ::::U U G:::: ::A: 153877 AAUAUGUUACAGCUCUUUUAGAAUUUGUCUAGCcAGCUUUCCGGUUU-UUGCCCCCCAAA 153935 >:::: 60 ccccU 64 153936 AAAGA 153940 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8647,sp|AC078881.5|AC078881 Homo sapiens BAC clone RP11-130F10 from 4, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGUUAUAACUCUUCUAUAAUUUGUGUAGCAGGUUUUCCGGUCUUCACUAGAAAAACUCA hit 148 : 141731 141793 (fwd) 29.92 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA A CUCUU UA AAUUUGU UAGCAG::U:UC :: U :: GA:A:: 141731 UUAGUGUUAUAACUCUUCUAUAAUUUGUGUAGCAGGUUUUCCGGUC-UUCACUAGAAAAA 141789 :::: 61 cccU 64 C+C 141790 CUCA 141793 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8770,sp|AC079174.20|AC079174 Homo sapiens 12 BAC RP11-651L5 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUACAAUUUGUGUGGCAGGUUUCCCGGUUUUUACCAGAAAAAUCUA hit 149 : 33229 33289 (fwd) 36.10 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUACAAUUUGU U GCAG::U::C :::U U ::: G::A:: 33229 --AGUGUUACAGCUCUUUUACAAUUUGUGUGGCAGGUUUCCCGGUU-UUUACCAGAAAAA 33285 :::: 61 cccU 64 C 33286 UCUA 33289 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8959,sp|AC079780.6|AC079780 Homo sapiens BAC clone RP11-379L16 from 7, complete sequence. ----isReversed: 0 ----hitSequence: UUGGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGUGGUUUUCCGGUCUUUACCAGUAAGCCC hit 150 : 14973 15036 (fwd) 35.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U GUGUUACAGCUCUUUUA+AAUUUGUC AGCAG:: U: : GU+ : :A :: 14973 UUGGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGUGGUUUUCCGGUCUUUACCAGUAA 15032 :::: 61 cccU 64 CC 15033 GCCC 15036 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9023,sp|AC079910.18|AC079910 Homo sapiens 3 BAC RP11-418B12 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUUAUAGCUCUUUUACAAUUUGUCUAGUAGGUUUUCCAGUUUUCACCAGAAAAUCCCG hit 151 : 36407 36469 (fwd) 37.56 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUA AGCUCUUUUACAAUUUGUCUAG AG :U:UC :::U U ::: GA:A: 36407 CAAGUGUUAUAGCUCUUUUACAAUUUGUCUAGUAGGUUUUCCAGUU-UUCACCAGAAAAU 36465 :::: 61 cccU 64 CCC 36466 CCCG 36469 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9287,sp|AC084377.5|AC084377 Homo sapiens BAC clone RP11-478L9 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UGUAUUACAGCUCUUUUAGAAUUUGUCUAGAAGGCUUUCCGGUUUUUGCAGGAAAGCAACC hit 152 : 47926 47866 (rev) 40.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 +GU UUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UC ::U U :: GA:A:C 104395 --UGUAUUACAGCUCUUUUAGAAUUUGUCUAGAAGGCUUUCCGGUU-UUUGCAGGAAAGC 104451 :::: 61 cccU 64 C 104452 AACC 104455 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9519,sp|AC087579.17|AC087579 Homo sapiens chromosome 8, clone RP11-429B7, complete sequence. ----isReversed: 0 ----hitSequence: CGUGUUACAGCUCUUUUGGAAUUUGUCUAGCAGGUUUUCUGGUUUUCACUGCAAAACCCCA hit 153 : 62393 62453 (fwd) 41.39 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 GUGUUACAGCUCUUUU +AAUUUGUCUAGCAGG:U:U U ::U U :: G A:A:C 62393 --CGUGUUACAGCUCUUUUGGAAUUUGUCUAGCAGGUUUUCUGGUU-UUCACUGCAAAAC 62449 :::: 61 cccU 64 CCC 62450 CCCA 62453 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9543,sp|AC087650.12|AC087650 Homo sapiens, clone RP11-100E5, complete sequence. ----isReversed: 1 ----hitSequence: AGUAUUACAGUUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUUCAUCGGAAACUCUAC hit 154 : 156904 156844 (rev) 37.70 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU UUACAG+UCUUUUA+AAUUUGUCUAGCAG UU:UC : :U U : : GA:AC 12695 --AGUAUUACAGUUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUU-UUCAUCGGAAACU 12751 :::: 61 cccU 64 C++ 12752 CUAC 12755 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9601,sp|AC087884.18|AC087884 Homo sapiens 12 BAC RP11-416A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACCCUUC hit 155 : 158471 158408 (rev) 46.77 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAU UGUCUAGCAGG+U:UC + U U+ + GA:A+C 38272 GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACC 38331 :::: 61 cccU 64 C+ 38332 CUUC 38335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9848,sp|AC090579.6|AC090579 Homo sapiens chromosome 8, clone RP11-649G15, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUCUUCACUGGAAGACCACU hit 156 : 177362 177300 (rev) 41.05 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCU UUA+AAUUU UCUAGCAGG: :UCU :: U :: GGA: :C 8705 UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUC-UUCACUGGAAGAC 8763 :::: 61 cccU 64 C CU 8764 CACU 8767 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9850,sp|AC090587.10|AC090587 Homo sapiens chromosome 11, clone RP11-348A20, complete sequence. ----isReversed: 0 ----hitSequence: AAAGUGUCACAGCUCUUUUAGAAUUUGUCUAGCAGGGUUUCUGGUUUUCACCAGGAAACAAAAU hit 157 : 88418 88481 (fwd) 45.21 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGU ACAGCUCUUUUA+AAUUUGUCUAGCAG: U:UCU ::U U+ :: GGA:A : 88418 AAAGUGUCACAGCUCUUUUAGAAUUUGUCUAGCAGGGUUUCUGGUUUUCACCAGGAAACA 88477 :::: 61 cccU 64 +U 88478 AAAU 88481 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9996,sp|AC090944.2|AC090944 Homo sapiens chromosome 3 clone RP11-238A9 map 3p, complete sequence. ----isReversed: 0 ----hitSequence: UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGCUGGAAAACCCCUUUUUUAAACUCCU hit 158 : 71381 71440 (fwd) 29.15 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGC G U : ::: + ::: : A C 71381 UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGC--GCUGGAAAACC--CCUUUUUUAAAC 71436 :::: 61 cccU 64 CCU 71437 UCCU 71440 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #36,sp|AC091043.12|AC091043 Homo sapiens chromosome 18, clone RP11-595B24, complete sequence. ----isReversed: 1 ----hitSequence: UGAGUGUUACAGCUCUUUUUGAAUUUGUCUAGCAUGCUUUCUGCUUUUUACUGGAAAGUGCCC hit 159 : 100269 100207 (rev) 38.76 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUU +AAUUUGUCUAGCA :U:UCU :U U : GGA:A: 108042 UGAGUGUUACAGCUCUUUUUGAAUUUGUCUAGCAUGCUUUCUGCUU-UUUACUGGAAAGU 108100 :::: 61 cccU 64 CC 108101 GCCC 108104 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #97,sp|AC091180.20|AC091180 Homo sapiens chromosome 17, clone RP11-1079K10, complete sequence. ----isReversed: 1 ----hitSequence: UAAAUGUUUCAACUCUGCUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUGUGGAAAAACCCCCA hit 160 : 32988 32925 (rev) 33.78 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAA UGUU CA CUCU UA+AAUUUGUCUAGCAGGUU:U +:: U G::+ A:ACC 150703 UAAAUGUUUCAACUCUGCUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUGUGGAAAAACC 150762 :::: 61 cccU 64 CCC 150763 CCCA 150766 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #110,sp|AC091212.17|AC091212 Homo sapiens 3 BAC CTD-2021J15 (CalTech Clone Library D) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGAUCUUUUAGAAUUUGUCUAGUACAUUUUCCAGUUUUCACCAGGAAUCUGCCU hit 161 : 23064 23125 (fwd) 33.22 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAG UCUUUUA+AAUUUGUCUAG A U::UC :::U U+ ::: GA::C 23064 --AGUGUUACAGAUCUUUUAGAAUUUGUCUAGUACAUUUUCCAGUUUUCACCAGGAAUCU 23121 :::: 61 cccU 64 CCU 23122 GCCU 23125 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #653,sp|AC092473.3|AC092473 Homo sapiens chromosome X clone RP11-126D17 map Xp11.4 complete sequence. ----isReversed: 1 ----hitSequence: UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUUUUUACUGGAAAGCCCCA hit 162 : 42447 42391 (rev) 28.58 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAG+UCUUUUA+ AUUUG CUAGCAGG:U:U: ::U U :: :A:A:C 95617 ------UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUU-UUUACUGGAAAGC 95669 :::: 61 cccU 64 CCC 95670 CCCA 95673 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #741,sp|AC092622.2|AC092622 Homo sapiens BAC clone RP11-254O14 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UUACAGCUUUUUCAGAAUUUGUCCAGCAGGUUUUCUGGUUUUCACUGGAAAAUACCU hit 163 : 8467 8411 (rev) 33.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAGCU UUU A+AAUUUGUC AGCAG :U:UCU ::U U :: GGA:A: 11065 ------UUACAGCUUUUUCAGAAUUUGUCCAGCAGGUUUUCUGGUU-UUCACUGGAAAAU 11117 :::: 61 cccU 64 CCU 11118 ACCU 11121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #805,sp|AC092687.3|AC092687 Homo sapiens BAC clone RP11-791G15 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AUACAGCUUUUUUAGAAUUUGUCUAGGAGGUUUUCUGGUUUUCACCAGAACCAACCC hit 164 : 71239 71295 (fwd) 27.44 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UACAGCU UUUUA+AAUUUGUCUAG AG:U :UC :::U U ::: GA: C: 71239 ------AUACAGCUUUUUUAGAAUUUGUCUAGGAGGUUUUCUGGUU-UUCACCAGAACCA 71291 :::: 61 cccU 64 CC 71292 ACCC 71295 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #805,sp|AC092687.3|AC092687 Homo sapiens BAC clone RP11-791G15 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGUGUUACAGCUUAUUUAGAAUUUGUCUAGCAGAUUUUCCAGCUUUUACUGGAAGCCCCCU hit 165 : 142593 142533 (rev) 36.90 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 GUGUUACAGCU UUUA+AAUUUGUCUAGCAG U :UC :::U U ::: GA: C 46582 --GGUGUUACAGCUUAUUUAGAAUUUGUCUAGCAGAUUUUCCAGCU-UUUACUGGAAGCC 46638 :::: 61 cccU 64 CCCU 46639 CCCU 46642 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1123,sp|AC093183.3|AC093183 Homo sapiens chromosome 7 clone RP11-786I1, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUGUGGUGGCUCACACCUGU hit 166 : 157888 157828 (rev) 38.08 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 UAAGUGUUAC GCUCUUUUA+AAUUUGUCUAGCAGG ::: ::: U G ::: ::: 16246 UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUG---UGGu-GGCUCACA 16301 >:::: 60 ccccU 64 CC+ U 16302 CCUGU 16306 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1128,sp|AC093206.2|AC093206 Homo sapiens chromosome 5 clone CTC-448D22, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUCACCAUAAAAUGCCC hit 167 : 119291 119351 (fwd) 38.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUA+AAUUUGUCUAGCAG U:U :::U U ::: A:A 119291 --AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUU-UUCACCAUAAAAU 119347 :::: 61 cccU 64 CC 119348 GCCC 119351 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1178,sp|AC093283.3|AC093283 Homo sapiens chromosome 5 clone RP11-428C6, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCCCUUUUCAAAUUUGUCUAGCAGGCUUUUUGGGUUAGGUCAGAAAGUCCCC hit 168 : 44801 44739 (rev) 38.81 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGC CUUUU AAUUUGUCUAGCAG :U:U: : U UAG : :A:A: 161454 UAAGUGUUACAGCCCUUUUCAAAUUUGUCUAGCAGGCUUUUUGGGU-UAGGUCAGAAAGU 161512 :::: 61 cccU 64 CCC 161513 CCCC 161516 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1324,sp|AC093575.2|AC093575 Homo sapiens chromosome 1 clone RP11-40C18, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUUUUUGCUGGAAAGCCCAG hit 169 : 158650 158590 (rev) 50.80 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU:::U U :::GGA:A:C 589 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUU-UUUGCUGGAAAGC 645 :::: 61 cccU 64 CC+ 646 CCAG 649 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1447,sp|AC093748.3|AC093748 Homo sapiens BAC clone RP11-29P18 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GAAAUGUAACAGCCCUUUUAGAAUUUGUCUAGCAGGGUUUCUGGUGGUACCAGCAGACUCCAC hit 170 : 31465 31527 (fwd) 30.86 bits ::::::::::::::::::::::::::::::::::..:<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA..GguucucucuCUGUaGGagggaga 58 AA UGU ACAGC CUUUUA+AAUUUGUCUAGCA G:UUCU :: GUA :: AGA 31465 GAAAUGUAACAGCCCUUUUAGAAUUUGUCUAGCAggGUUUCUGGUG--GUAC-CAGCAGA 31521 >>:::: 59 cccccU 64 C:CC+ 31522 CUCCAC 31527 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1547,sp|AC093850.2|AC093850 Homo sapiens BAC clone RP11-489P15 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AAUGUUAAAGCUCUUUUAGAAUUUGUCUAGCAGGCAAAUAAAUAAAUAAAAUAAAAUAAAUAAU hit 171 : 34554 34491 (rev) 26.75 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_____>>.>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCUGUaGGa.gggaga 58 A UGUUA+AGCUCUUUUA+AAUUUGUCUAGCAG: : ::: U: UA :A ::: : 97174 --AAUGUUAAAGCUCUUUUAGAAUUUGUCUAGCAGGCAAAUAAaUAAAUAAAAuAAAAUA 97231 >>:::: 59 cccccU 64 : +U 97232 AAUAAU 97237 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1599,sp|AC093903.3|AC093903 Homo sapiens BAC clone RP11-733C7 from 4, complete sequence. ----isReversed: 0 ----hitSequence: CAGCUCUUUCAGAAUUUGUCUAGCAGGAUUUCUAGUUUUCACCGGAAAACCUCC hit 172 : 113071 113124 (fwd) 31.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 CAGCUCUUU A+AAUUUGUCUAGCAGG:U:UCU:::U U :::GGA:A:C 113071 ---------CAGCUCUUUCAGAAUUUGUCUAGCAGGAUUUCUAGUU-UUCACCGGAAAAC 113120 :::: 61 cccU 64 C+C 113121 CUCC 113124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1649,sp|AC095030.2|AC095030 Homo sapiens chromosome 1 clone RP11-375A5, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUUUUUGCUGGAAAGCCCAG hit 173 : 43279 43219 (rev) 50.80 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU:::U U :::GGA:A:C 98729 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUU-UUUGCUGGAAAGC 98785 :::: 61 cccU 64 CC+ 98786 CCAG 98789 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2090,sp|AC098481.2|AC098481 Homo sapiens chromosome 3 clone RP11-349E16, complete sequence. ----isReversed: 0 ----hitSequence: AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGGAGGUCUUUACCAGAAAGCCUCC hit 174 : 206246 206310 (fwd) 38.42 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..____..>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..GUaG..Gaggga 56 A UGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UC :: GU+ :: GA 206246 --AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGG-agGUCUuuACCAGA 206302 >>>>:::: 57 gacccccU 64 :A:CC+C 206303 AAGCCUCC 206310 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2200,sp|AC098869.3|AC098869 Homo sapiens BAC clone RP11-588L15 from 4, complete sequence. ----isReversed: 0 ----hitSequence: UUUGUGUUACAGCUGCUUUAGAAUUUGUCUAGCAGACUUUCCUGUUUUUAACAGAAAGCCCCC hit 175 : 180532 180594 (fwd) 39.35 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U +GUGUUACAGCU UUUA+AAUUUGUCUAGCAG :U:UC +U U U A+ GA:A: 180532 UUUGUGUUACAGCUGCUUUAGAAUUUGUCUAGCAGACUUUC-CUGUUUUUAACAGAAAGC 180590 :::: 61 cccU 64 CCC 180591 CCCC 180594 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2267,sp|AC099397.5|AC099397 Homo sapiens BAC clone RP11-247K9 from 4, complete sequence. ----isReversed: 1 ----hitSequence: UCCGUGUUACAGCUCUUUUAGAAUUCAUCUAGCAGGUUUUCCAGUCUUCGAUAAAUGUGU hit 176 : 14602 14543 (rev) 27.79 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U GUGUUACAGCUCUUUUA+AAUU UCUAGCAG::U UC +: GU+ :+ GA A:: 85406 UCCGUGUUACAGCUCUUUUAGAAUUCAUCUAGCAGGUUUUC-CA--GUCU-UC-GAUAAA 85460 :.::: 61 c.ccU 64 + U 85461 UgUGU 85465 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2344,sp|AC099654.5|AC099654 Homo sapiens BAC clone RP11-1217F2 from 7, complete sequence. ----isReversed: 0 ----hitSequence: AAGGUGUUACAGCUCUUUCAGAAUUUGUCUAGUAUGUUUUCCGGUUUUCACUCCCAGGUAGGCUCGGGAAGAGGCA hit 177 : 99740 99815 (fwd) 28.48 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_..........___ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU..........GUa 49 A GUGUUACAGCUCUUU A+AAUUUGUCUAG A ::U: C : ::U GUA 99740 AAGGUGUUACAGCUCUUUCAGAAUUUGUCUAGUAUGUUUUCCGgUUUucacucccagGUA 99799 _>>.>>>>>>>>:::: 50 GGa.gggagacccccU 64 G:: : G :A:: C 99800 GGCuCGGGAAGAGGCA 99815 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2446,sp|AC100789.2|AC100789 Homo sapiens chromosome X, clone RP11-907I17, complete sequence. ----isReversed: 1 ----hitSequence: UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUUUUUACUGGAAAGCCCCA hit 178 : 114892 114836 (rev) 28.58 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAG+UCUUUUA+ AUUUG CUAGCAGG:U:U: ::U U :: :A:A:C 68562 ------UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUU-UUUACUGGAAAGC 68614 :::: 61 cccU 64 CCC 68615 CCCA 68618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2528,sp|AC103559.2|AC103559 Homo sapiens chromosome 3 clone RP11-286L5, complete sequence. ----isReversed: 0 ----hitSequence: AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGGAGGUCUUUACCAGAAAGCCUCC hit 179 : 82492 82556 (fwd) 38.42 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..____..>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..GUaG..Gaggga 56 A UGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UC :: GU+ :: GA 82492 --AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGG-agGUCUuuACCAGA 82548 >>>>:::: 57 gacccccU 64 :A:CC+C 82549 AAGCCUCC 82556 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2554,sp|AC103693.2|AC103693 Homo sapiens chromosome 18, clone CTD-2522C24, complete sequence. ----isReversed: 0 ----hitSequence: UAAAUGUUACAGUUCUUUUAGAAUCUGUCUAGCGAAUUUUCUAGUGGGAAACCUUCC hit 180 : 59274 59330 (fwd) 30.57 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAA UGUUACAG+UCUUUUA+AAU UGUCUAGC G: :U:UC UAG GG:A: :C 59274 UAAAUGUUACAGUUCUUUUAGAAUCUGUCUAGC--GAAUUUUC----UAG-UGGGAAACC 59326 :::: 61 cccU 64 +C 59327 UUCC 59330 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2698,sp|AC104046.2|AC104046 Homo sapiens chromosome