Params: ./cmzasha --no-stderr --filter 100 26.1 Rfam/cm/RF00066.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00066_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: tricycle.cs.washington.edu pid: 16182 ----cmFile: Rfam/cm/RF00066.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17536,sp|M13307.1|PMUG7A1 Sea urchin (P.miliaris) small nuclear RNA U71 gene. ----isReversed: 1 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGAGGCGAGUGCCCAA hit 0 : 56 2 (rev) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 2 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCgUCCgaaGUCGGAgGCG 47 >>>>>:::: 56 agacccccU 64 AG::CCC+ 48 AGUGCCCAA 56 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17540,sp|M13311.1|PMUG7A5 Sea urchin (P.miliaris) small nuclear RNA U75 gene. ----isReversed: 0 ----hitSequence: UAUCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGUGGCGAGUGCCCAACAAU hit 1 : 240 300 (fwd) 27.14 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____..>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG..Gagggaga 58 UA++U UU++AG+U U UA+AA GUCU GC :::::::+UC G G GA+::::: 240 UAUCU-UUCAAGUUUCUCUAGAA-GGGUCUCGC--GUCCGAAGUC-GGUGgcGAGUGCCC 294 >>:::: 59 cccccU 64 ::C +U 295 AACAAU 300 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17541,sp|M26272.1|PMUR7AA Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCUUCCGAAGUCGGAUGCGAGUGCCCAA hit 2 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCuUCCgaaGUCGGAuGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17542,sp|M26273.1|PMUR7AB Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCUUCCGAAGUCGGAUGCGAGUGCCCAA hit 3 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCuUCCgaaGUCGGAuGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17543,sp|M26274.1|PMUR7AC Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGAGGCGAGUGCCCAA hit 4 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCgUCCgaaGUCGGAgGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17544,sp|M26275.1|PMUR7AD Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCUUCCGAAGUCGGAGGCGAGUGCCCAA hit 5 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCuUCCgaaGUCGGAgGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17545,sp|M26276.1|PMUR7AE Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCGUCCGAAGUCGGAGGCGAGUGCCCAA hit 6 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCgUCCgaaGUCGGAgGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17546,sp|M26277.1|PMUR7AF Sea urchin U7 RNA, clone 1. ----isReversed: 0 ----hitSequence: UCUUUCAAGUUUCUCUAGAAGGGUCUCGCAUCCGAAGUCGGAGGCGAGUGCCCAA hit 7 : 1 55 (fwd) 26.16 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_...____>>.>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU...GUaGGa.ggg 55 UCUUU A A UUU UCUAG AGG::CUC:C UC GU+GGA G:G 1 -------------UCUUUCA-AGUUUCUCUAGAAGGGUCUCGCaUCCgaaGUCGGAgGCG 46 >>>>>:::: 56 agacccccU 64 AG::CCC+ 47 AGUGCCCAA 55 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #23407,sp|U28353.1|TG28353 Toxoplasma gondii nucleoside triphosphate hydrolase (NTP4) gene, complete cds. ----isReversed: 0 ----hitSequence: GAGCUAAUACAGCUUUUAGAAUUUUGUCUAGCAGGUUUUCUGAAUUUGGUUGGAAAACCUAU hit 8 : 286 347 (fwd) 30.29 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 A +U UACAGC UUUUA+AA UUUGUCUAGCAGG:U:UCU : U U G : GGA:A: 286 GAGCUAAUACAGC--UUUUAGAAuUUUGUCUAGCAGGUUUUCUGAAU-UUGGUUGGAAAA 342 >:::: 60 ccccU 64 CC++U 343 CCUAU 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7155,sp|AC097268.10|AC097268 Pan troglodytes BAC RP43-43O8 (Roswell Park Cancer Institute) complete sequence. ----isReversed: 0 ----hitSequence: UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUAUCAGAAAGCCUCC hit 9 : 21707 21769 (fwd) 36.02 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU UUACA CUC UUUACAAUUUGUCUAG AGG:U:UC : : U : : GA:A:C 21707 UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUC-UUUAUCAGAAAGC 21765 :::: 61 cccU 64 C+C 21766 CUCC 21769 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4503,sp|AC002397.1|AC002397 Mouse chromosome 6 BAC-284H12 (Research Genetics mouse BAC library) complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCU hit 10 : 156523 156585 (fwd) 67.07 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 156523 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 156581 :::: 61 cccU 64 CCCU 156582 CCCU 156585 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5391,sp|AC111103.7|AC111103 Mus musculus, clone RP23-187G7, complete sequence. ----isReversed: 0 ----hitSequence: AAAGCACAGCUAUUUUAGAAUUUUUUCCUAGCAGCUUUUCUGACUUUGGUUGGAAAACUCAU hit 11 : 76320 76381 (fwd) 28.32 bits ::::::::::::::::::::::::::::..:::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGU..CUAGCAGguucucucuCUGUaGGagggaga 58 AAG ACAGCU UUUUA+AAUUU U CUAGCAG::U:UCU :CU U GG: GGA:A 76320 AAAGC---ACAGCUAUUUUAGAAUUUUUucCUAGCAGCUUUUCUGACU-UUGGUUGGAAA 76375 >>:::: 59 cccccU 64 :: C+U 76376 ACUCAU 76381 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5823,sp|AC121824.2|AC121824 Mus musculus clone RP23-467P15, complete sequence. ----isReversed: 1 ----hitSequence: GAGCUAAUACAGCUUUUAGAAUUUUGUCUAGCAGGUUUUCUGAAUUUGGUUGGAAAACCUAU hit 12 : 132037 131976 (rev) 30.29 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 A +U UACAGC UUUUA+AA UUUGUCUAGCAGG:U:UCU : U U G : GGA:A: 62991 GAGCUAAUACAGC--UUUUAGAAuUUUGUCUAGCAGGUUUUCUGAAU-UUGGUUGGAAAA 63047 >:::: 60 ccccU 64 CC++U 63048 CCUAU 63052 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5871,sp|AC121882.3|AC121882 Mus musculus chromosome 1 clone RP24-135M19, complete sequence. ----isReversed: 1 ----hitSequence: GAACUAUUAAAGUACUUUUAUAGAAUUUGCCUGGCAGGCUUUCUGACUUUUGUUGGAAAACCCAU hit 13 : 49526 49462 (rev) 30.24 bits ::::::::::::::::::::..:::::::::::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUACAGCUCUUUUA..cAAUUUGUCUAGCAGguucucucuCUGUaGGagggaga 58 AA+U UUA+AG+ CUUUUA +AAUUUG CU GCAGG U:UCU :CU U G: GGA:A 123851 GAACUAUUAAAGUACUUUUAuaGAAUUUGCCUGGCAGGCUUUCUGACU-UUUGUUGGAAA 123909 >>:::: 59 cccccU 64 CCC+U 123910 ACCCAU 123915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6136,sp|AC122372.4|AC122372 Mus musculus chromosome 10 clone RP23-463P4, complete sequence. ----isReversed: 0 ----hitSequence: ACAGUUCUCUUAGAAUUUUUCUAGCAGGUUUUCUGACUUUGGUCGGAAAACUUGA hit 14 : 55579 55633 (fwd) 35.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 ACAG+UCU UUA+AAUUU UCUAGCAGG:U:UCU::CU U GG::GGA:A:C 55579 --------ACAGUUCUCUUAGAAUUUUUCUAGCAGGUUUUCUGACU-UUGGUCGGAAAAC 55629 :::: 61 cccU 64 + 55630 UUGA 55633 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6562,sp|AC124389.4|AC124389 Mus musculus chromosome 1 clone RP24-429G21, complete sequence. ----isReversed: 0 ----hitSequence: GAGCUAUUGCAGCUCUUUUAGCACUUUUCUAGAAGGUUUUCUGACCUUGGUAGAAAAAGCCAU hit 15 : 96693 96755 (fwd) 28.77 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A +U UU CAGCUCUUUUA+ A UU UCUAG AG :U:U U :C U GG: G A:A: 96693 GAGCUAUUGCAGCUCUUUUAGCACUUUUCUAGAAGGUUUUCUGACC-UUGGUAGAAAAAG 96751 :::: 61 cccU 64 CC+U 96752 CCAU 96755 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7094,sp|AC127265.4|AC127265 Mus musculus chromosome 8 clone RP24-341O20, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUACACAGCUCUUUCAGAAUUUUUCUAACAGGAUUUCAGACCUUGGUUGGAAAUCCCAA hit 16 : 104232 104171 (rev) 29.89 bits ::::::::.:::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUU.ACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AGUGU ACAGCUCUUU A+AAUUU UCUA CAGG:U:UC :C U GG: GA:A: 72349 --AGUGUAcACAGCUCUUUCAGAAUUUUUCUAACAGGAUUUCAGACC-UUGGUUGGAAAU 72405 >:::: 60 ccccU 64 CCC+ 72406 CCCAA 72410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23944,sp|AL591373.8|AL591373 Mouse DNA sequence from clone RP23-268M6 on chromosome 18 ----isReversed: 0 ----hitSequence: UCUUUUAGAAUUUUUCUAGUAGGUUUUCUGACUUUGGUCACAAAACCCAA hit 17 : 127622 127671 (fwd) 29.01 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UCUUUUA+AAUUU UCUAG AGG:U:U ::CU U GG:: A:A:C 127622 -------------UCUUUUAGAAUUUUUCUAGUAGGUUUUCUGACU-UUGGUCACAAAAC 127667 :::: 61 cccU 64 CC+ 127668 CCAA 127671 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24158,sp|AL606470.15|AL606470 Mouse DNA sequence from clone RP23-293J11 on chromosome 11 ----isReversed: 1 ----hitSequence: GAGCUAUUAAAGCUCUUUUAGAAUUUUCUUUAGCAGGUUUUCUUAUUUUGGUGGAAAACCCAAG hit 18 : 8994 8931 (rev) 33.54 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 A +U UUA+AGCUCUUUUA+AA UUU U UAGCAGGUU:U U:::U U G:::G A:AC 194977 GAGCUAUUAAAGCUCUUUUAGAAuUUUCUUUAGCAGGUUUUCUUAUU-UUGGUGGAAAAC 195035 >:::: 60 ccccU 64 CC + 195036 CCAAG 195040 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24357,sp|AL627089.12|AL627089 Mouse DNA sequence from clone RP23-107H23 on chromosome 4 ----isReversed: 1 ----hitSequence: UUACAGCUCUUUUAUAAUUUUGUCCAGCAGGUUAUCUGAUUUUGAUCAGAAAACCCAU hit 19 : 96815 96758 (rev) 32.59 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 UUACAGCUCUUUUA AA UUUGUC AGCAGG:U UC :::U U G::: GA A: 85561 ------UUACAGCUCUUUUAUAAuUUUGUCCAGCAGGUUAUCUGAUU-UUGAUCAGAAAA 85613 >:::: 60 ccccU 64 CCC+U 85614 CCCAU 85618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24402,sp|AL627251.13|AL627251 Mouse DNA sequence from clone RP23-336G7 on chromosome 4 ----isReversed: 1 ----hitSequence: ACAGCUCUGUUAGAACUUCUCUAGCAGGAUUUCUGACUUUGGUCAGAAAACCUAG hit 20 : 58401 58347 (rev) 28.33 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 ACAGCUCU UUA+AA UU UCUAGCAGG:U:UC ::CU U GG:: GA:A:C 145639 --------ACAGCUCUGUUAGAACUUCUCUAGCAGGAUUUCUGACU-UUGGUCAGAAAAC 145689 :::: 61 cccU 64 C++ 145690 CUAG 145693 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24834,sp|AL669828.13|AL669828 Mouse DNA sequence from clone RP23-163J20 on chromosome 2 ----isReversed: 0 ----hitSequence: UUAGAGCUCUUUUAGAAUUUUUUCUAGCAGCUUUUCUGACUUUGGUCAGAAAACCCAU hit 21 : 126589 126646 (fwd) 37.61 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 UUA AGCUCUUUUA+AA UUU UCUAGCAG::U:UC ::CU U GG:: GA:A: 126589 ------UUAGAGCUCUUUUAGAAuUUUUUCUAGCAGCUUUUCUGACU-UUGGUCAGAAAA 126641 >:::: 60 ccccU 64 :CC+U 126642 CCCAU 126646 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25338,sp|AL672308.8|AL672308 Mouse DNA sequence from clone RP23-459H14 on chromosome X ----isReversed: 0 ----hitSequence: AAAGUUAUUAAUGUUCUUUUAGAGAUUUUUCUAGCAGGAUUUCUGAUUUUGGUCAGAAAACCCAA hit 22 : 72809 72873 (fwd) 28.50 bits :::::.:::::::::::::::::.:::::::::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGU.GUUACAGCUCUUUUAcA.AUUUGUCUAGCAGguucucucuCUGUaGGagggaga 58 AAGU UUA+ G+UCUUUUA+A AUUU UCUAGCAGG:U:UC :::U U G::: GA:A 72809 AAAGUuAUUAAUGUUCUUUUAGAgAUUUUUCUAGCAGGAUUUCUGAUU-UUGGUCAGAAA 72867 >>:::: 59 cccccU 64 :CCC+ 72868 ACCCAA 72873 ----endhit ----hitSequence: ACAGCUCUUUUAGAAUUUUUCUAUCAGGAUUUCUGACUUUGGCUGGAAAACCAAA hit 23 : 72743 72797 (fwd) 31.23 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 ACAGCUCUUUUA+AAUUU UCUA CAGG:U:UCU CU U GG GGA:A:C 72743 --------ACAGCUCUUUUAGAAUUUUUCUAUCAGGAUUUCUGACU-UUGGCUGGAAAAC 72793 :::: 61 cccU 64 C + 72794 CAAA 72797 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51547,sp|BX470174.9|BX470174 Mouse DNA sequence from clone RP23-354A24 on chromosome 4 ----isReversed: 1 ----hitSequence: ACAGAUCUUUUAGAAUUUUUCUAGCAGCUUUUCUGACUUUGGUCGGAAAACCUAU hit 24 : 16405 16351 (rev) 39.88 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 ACAG UCUUUUA+AAUUU UCUAGCAG::U:UCU::CU U GG::GGA:A:: 90898 --------ACAGAUCUUUUAGAAUUUUUCUAGCAGCUUUUCUGACU-UUGGUCGGAAAAC 90948 :::: 61 cccU 64 C++U 90949 CUAU 90952 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #69350,sp|X54165.1|MMSNU7G M.musculus U7 snRNA gene ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCU hit 25 : 2549 2611 (fwd) 67.07 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 2549 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 2607 :::: 61 cccU 64 CCCU 2608 CCCU 2611 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #69351,sp|X54164.1|MMSNU7PS M.musculus U7 snRNA type II pseudogene ----isReversed: 0 ----hitSequence: AAAGGGCUAUAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUUCCUUGAACCCAAGCCCCAA hit 26 : 976 1042 (fwd) 28.53 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_...____>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU...GUaGGagggag 57 AAG G UA AGCUCUUUUA+AAUUUGUCUAGCAGGU :U : :U U G: : A: 976 AAAGGGCUAUAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUuucCUUGAACCCAA 1035 >>>:::: 58 acccccU 64 CCCC+ 1036 GCCCCAA 1042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #75709,sp|X54748.1|MMU7 Mouse U7 functional gene for U7 small nulear RNA ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCU hit 27 : 481 543 (fwd) 67.07 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 481 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 539 :::: 61 cccU 64 CCCU 540 CCCU 543 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #76022,sp|X54746.1|MMU7PS23 M.musculus U7 pseudogene for U7 small nuclear RNA (clone 23) ----isReversed: 0 ----hitSequence: UGUGGCCACAGCUCUUUUAGAAUUUUUCUAGCAGGAUUUCUGACUUUGCUCAGAAAACCCAA hit 28 : 298 359 (fwd) 33.76 bits :::::.::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGU.GUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 +GU G ACAGCUCUUUUA+AAUUU UCUAGCAGG:U:UC :: U U G :: GA:A: 298 --UGUgGCCACAGCUCUUUUAGAAUUUUUCUAGCAGGAUUUCUGACU-UUGCUCAGAAAA 354 >:::: 60 ccccU 64 CCC+ 355 CCCAA 359 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #76023,sp|X07183.1|MMU7SNR Mouse U7 snRNA ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACGCCU hit 29 : 3 63 (fwd) 64.31 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 3 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 59 :::: 61 cccU 64 CCU 60 GCCU 63 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #76737,sp|M18675.1|MMUR7 Mouse U7 small nuclear RNA. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACUUCGGUCGGAAAACCCCY hit 30 : 2 62 (fwd) 64.72 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU::CU U+GG::GGA:A:C 2 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGACU-UCGGUCGGAAAAC 58 :::: 61 cccU 64 CCC+ 59 CCCY 62 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUCGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUGUGUUGAGCCAACAGCUUUU hit 31 : 5973 6037 (fwd) 53.24 bits :::::.::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGU.GUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 UAAGU GUUACAGCUCUUUUAC+AUUUGU UAGCAGG:U:U::+ UGU G +::A:A: 5973 UAAGUcGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUGUGUUGAGCCAACAG 6032 >:::: 60 ccccU 64 C + U 6033 CUUUU 6037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACACU hit 32 : 6541 6604 (fwd) 73.78 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 6541 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 6600 :::: 61 cccU 64 C CU 6601 CACU 6604 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAAUUAU hit 33 : 9463 9526 (fwd) 72.23 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG::U:U::CUCUGUAGGAG::A:A:: 9463 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 9522 :::: 61 cccU 64 ++U 9523 UUAU 9526 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGUGCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUCU hit 34 : 12899 12962 (fwd) 68.67 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAG+ CUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 12899 UAAGUGUUACAGUGCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 12958 :::: 61 cccU 64 C+CU 12959 CUCU 12962 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUGCUAUUUGUCUAGCAGGUUCUUAUUUUGUAGGAGCCAAAAAUUAU hit 35 : 13816 13753 (rev) 59.29 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUU C+AUUUGUCUAGCAG::U U:::U:UGUAG:A:::A A:: 371 UAAGUGUUACAGCUCUUUUGCUAUUUGUCUAGCAGGUUCUUAUUUUGUAGGAGCCAAAAA 430 :::: 61 cccU 64 ++U 431 UUAU 434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAACUGU hit 36 : 13566 13503 (rev) 72.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG::U:U::CUCUGUAGGAG::A:A:: 621 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 680 :::: 61 cccU 64 C+ U 681 CUGU 684 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGUAGGAGUUAUAAACUGU hit 37 : 13139 13076 (rev) 62.49 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUU CUAGCAG::U U::CUCUGUAGGAG::A A:: 1048 UAAGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGUAGGAGUUAUAAA 1107 :::: 61 cccU 64 C+ U 1108 CUGU 1111 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUUU hit 38 : 11144 11081 (rev) 72.21 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 3043 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 3102 :::: 61 cccU 64 C+ U 3103 CUUU 3106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGCAGGUUCUUAUUCUGUAGGAGCCACACUCUUU hit 39 : 8652 8586 (rev) 60.11 bits ::::::::::::::::::::::::::::::::::...:<<<<<<<<<<_____>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA...GguucucucuCUGUaGGagggag 57 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCA G UU:U:::UCUGUAGGA:::A: 5535 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAgcaGGUUCUUAUUCUGUAGGAGCCAC 5594 >>>:::: 58 acccccU 64 AC C+ U 5595 ACUCUUU 5601 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUGUAGCAGGUUCUUGCCAUUGUAGGAGCCACCUGAU hit 40 : 7136 7074 (rev) 51.62 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGU UAGCAGGUU:+:+C::U U ::G+:+:ACC 7051 UAAGUGUUACAGCUCUUUUACUAUUUGUGUAGCAGGUUCUUGCCAU-UGUAGGAGCCACC 7109 :::: 61 cccU 64 +U 7110 UGAU 7113 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAGGUGUUACAGCUCUUUUACUAGUUAGCAAGUAGGCUUUUACUCUGACAGAAUCAUAAAUUGU hit 41 : 6769 6706 (rev) 42.38 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UA GUGUUACAGCUCUUUUAC+A UU C AG AG: U U:: UCUG + GA ::A A : 7418 UAGGUGUUACAGCUCUUUUACUAGUUAGCAAGUAGGCUUUUACUCUGACAGAAUCAUAAA 7477 :::: 61 cccU 64 + U 7478 UUGU 7481 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGUAGGUUCUUACUCUGUAGGAGCCACACAUCUU hit 42 : 4458 4395 (rev) 69.66 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAG AG:UU:U::CUCUGUAGGAG::A:AC: 9729 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGUAGGUUCUUACUCUGUAGGAGCCACACA 9788 :::: 61 cccU 64 C U 9789 UCUU 9792 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGA hit 43 : 3375 3312 (rev) 70.59 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 10812 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 10871 :::: 61 cccU 64 C+ 10872 CUGA 10875 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAGGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGACUGAGUCAUAAACUGU hit 44 : 2938 2875 (rev) 57.65 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UA GUGUUACAGCUCUUUUAC+AUUU CUAGCAG::U U::CUCUG + GAG::A A:: 11249 UAGGUGUUACAGCUCUUUUACUAUUUAGCUAGCAGGUUCUUACUCUGACUGAGUCAUAAA 11308 :::: 61 cccU 64 C+ U 11309 CUGU 11312 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAAUUGU hit 45 : 1632 1569 (rev) 71.40 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG::U:U::CUCUGUAGGAG::A:A:: 12555 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 12614 :::: 61 cccU 64 + U 12615 UUGU 12618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50070,sp|Z54313.1|XBU715KB X.borealis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUAGUACUCUGUAGGAGCCACACAUCUU hit 46 : 415 352 (rev) 65.80 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU ::CUCUGUAGGAG:: AC: 13772 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUAGUACUCUGUAGGAGCCACACA 13831 :::: 61 cccU 64 C U 13832 UCUU 13835 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #50071,sp|Z11688.1|XBU7SNRNA X.borealis U7 small nuclear RNA ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGA hit 47 : 339 402 (fwd) 70.59 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 339 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 398 :::: 61 cccU 64 C+ 399 CUGA 402 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGU hit 48 : 1483 1546 (fwd) 72.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 1483 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 1542 :::: 61 cccU 64 C+ U 1543 CUGU 1546 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCCGGUUUUUACUCUGUUGGAGCCACACACUGU hit 49 : 2360 2423 (fwd) 64.65 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGC G:UU U::CUCUGU GGAG::A AC: 2360 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCCGGUUUUUACUCUGUUGGAGCCACACA 2419 :::: 61 cccU 64 C+ U 2420 CUGU 2423 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUCUGUAGGAGCCACAAACUGU hit 50 : 4522 4585 (fwd) 69.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGU UAGCAG::U:U::CUCUGUAGGAG::A:A:: 4522 UAAGUGUUACAGCUCUUUUACUAUUUGUUUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 4581 :::: 61 cccU 64 C+ U 4582 CUGU 4585 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACACUGUAGGAGCCACACACUGU hit 51 : 5272 5209 (rev) 69.49 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::C CUGUAGG G::A:AC: 521 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACACUGUAGGAGCCACACA 580 :::: 61 cccU 64 C+ U 581 CUGU 584 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGGAGGUUCUUACUCUGUAGGAGCCACAAACUGU hit 52 : 3748 3685 (rev) 68.37 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAG AG::U:U::CUCUGUAGGAG::A:A:: 2045 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGGAGGUUCUUACUCUGUAGGAGCCACAAA 2104 :::: 61 cccU 64 C+ U 2105 CUGU 2108 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAACUGU hit 53 : 2814 2751 (rev) 72.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG::U:U::CUCUGUAGGAG::A:A:: 2979 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACAAA 3038 :::: 61 cccU 64 C+ U 3039 CUGU 3042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52191,sp|X64404.1|XLU7SNRG X.laevis U7 snRNA genes ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACACUGU hit 54 : 160 97 (rev) 72.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUAC+AUUUGUCUAGCAG:UU:U::CUCUGUAGGAG::A:AC: 5633 UAAGUGUUACAGCUCUUUUACUAUUUGUCUAGCAGGUUCUUACUCUGUAGGAGCCACACA 5692 :::: 61 cccU 64 C+ U 5693 CUGU 5696 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #1485,sp|AB015355.1|AB015355 Homo sapiens NRAMP2 gene for natural resistance-associated macrophage protein 2, complete cds. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACCCUUC hit 55 : 18502 18439 (rev) 46.77 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAU UGUCUAGCAGG+U:UC + U U+ + GA:A+C 25498 GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACC 25557 :::: 61 cccU 64 C+ 25558 CUUC 25561 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2371,sp|AB023143.1|AB023143 Homo sapiens mRNA for KIAA0926 protein, complete cds. ----isReversed: 0 ----hitSequence: AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUACCAGAAAACCCCU hit 56 : 5297 5357 (fwd) 41.09 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU U ACAGCUCUUUUA+AAUUUGUCUAGCAGG U:UC :::U U ::: GA:A C 5297 --AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUU-UUUACCAGAAAAC 5353 :::: 61 cccU 64 CCCU 5354 CCCU 5357 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #3681,sp|AB036934.1|AB036934 Homo sapiens GPBP, DINB1 genes for Thr/Ser kinase, DINB1, partial cds. ----isReversed: 1 ----hitSequence: UGAAUGUUACAGUUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUCUUCACCAGAAAGCUCCC hit 57 : 30781 30720 (rev) 29.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGUUACAG U UUU A+AAUUUGUCUA CAGG:U:UC ::: U ::: GA:A:C 33686 UGAAUGUUACAG-UUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUC-UUCACCAGAAAGC 33743 :::: 61 cccU 64 CC 33744 UCCC 33747 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9455,sp|AC002395.1|AC002395 Homo sapiens 12 PAC RPCI1-315L5 (Roswell Park Cancer Institute Human PAC library) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUGCAGCUCUUACAGAAUUUGUCUAGCAGGUUUUCCAGUCUUUACCAGAAAUGCCCCC hit 58 : 8016 8077 (fwd) 30.50 bits :::::::::::::::::::::::::::::::::::<<<<<<.<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucuc.ucuCUGUaGGagggagac 59 AGUGUU CAGCUCUU A+AAUUUGUCUAGCAGG:::UC :+U U UA A+: A::: 8016 --AGUGUUGCAGCUCUUACAGAAUUUGUCUAGCAGGUUUUCcAGUCUUUACCAGA-AAUG 8072 >:::: 60 ccccU 64 CCCC 8073 CCCCC 8077 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9490,sp|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequence. ----isReversed: 1 ----hitSequence: UAAAUGUUACAGCUCUUGUACAAUUUUUCUAGUAGGUUUUCUGGUUUUUAUUGGGAAAUCACAC hit 59 : 153050 152987 (rev) 36.13 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAA UGUUACAGCUCUU UACAAUUU UCUAG AGG U:UCU+ :U U : +GGA:A C 21903 UAAAUGUUACAGCUCUUGUACAAUUUUUCUAGUAGGUUUUCUGGUUUUUAUUGGGAAAUC 21962 :::: 61 cccU 64 C+ 21963 ACAC 21966 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9504,sp|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGAAAACCUUCA hit 60 : 78540 78489 (rev) 27.55 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGC UUUUA+AAUUUGUCUAGCAGGUU:U U G A:ACC 68563 UCAGUGUUACAGC--UUUUAGAAUUUGUCUAGCAGGUUUUC------UGG----AAAACC 68610 :::: 61 cccU 64 +C 68611 UUCA 68614 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9504,sp|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCCAGAAAACCUCC hit 61 : 76935 76875 (rev) 43.36 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGC CUUUUA+AAUUUGUCUAGCAGG:U:UC :: U :: GA:A:C 70168 UCAGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAGGUUUUCUGG--UUUU-CCAGAAAAC 70224 :::: 61 cccU 64 C+C 70225 CUCC 70228 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9826,sp|AC004125.1|AC004125 Homo sapiens Chromosome 16 BAC clone CIT987SK-625P11, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGAUUUUUACCCGGAACCCCUCC hit 62 : 155017 154954 (rev) 49.65 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGGU :UCU: :U U : :GGA: CC 39004 UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGAUUUUUACCCGGAACCC 39063 :::: 61 cccU 64 C+C 39064 CUCC 39067 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9909,sp|AC004226.1|AC004226 Homo sapiens chromosome 5, BAC clone 313n8 (LBNL H146), complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUUGGUUUUUUAGCGAAACCCUCC hit 63 : 14641 14582 (rev) 49.25 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGGUU:U::+U U U A+::A:ACC 94114 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUUGGU-UUUUU-AGCGAAACC 94169 :::: 61 cccU 64 C+C 94170 CUCC 94173 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9962,sp|AC004455.2|AC004455 Homo sapiens PAC clone RP5-1032B10 from 7, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUCUUUACCAGAAAGCCACU hit 64 : 28137 28077 (rev) 47.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UC ::: U ::: GA:A:C 50384 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUC-UUUACCAGAAAGC 50440 :::: 61 cccU 64 C CU 50441 CACU 50444 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9965,sp|AC004458.1|AC004458 Homo sapiens BAC clone CTB-57J11 from 7q21.1-q22, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUAUGGAAUUUGUCUAGCAGGUUUUUUGGUCUUCACAGGAAACUUCCC hit 65 : 101591 101531 (rev) 35.05 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUU U +AAUUUGUCUAGCAG UU:U:U :: U :: G:A:AC 66466 --AGUGUUACAGCUCUUAUGGAAUUUGUCUAGCAGGUUUUUUGGUC-UUCACAGGAAACU 66522 :::: 61 cccU 64 CC 66523 UCCC 66526 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9996,sp|AC004500.1|AC004500 Homo sapiens chromosome 5, P1 clone 1076B9 (LBNL H14), complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCAGAAAGCCCCA hit 66 : 62651 62709 (fwd) 41.25 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 62651 --AGUGUUACAGCUCUU--AGAAUUUGUCUAGCAGGCUUUCUGGUU-UUUGCCAGAAAGC 62705 :::: 61 cccU 64 CCC 62706 CCCA 62709 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #261,sp|AC004870.2|AC004870 Homo sapiens PAC clone RP4-739M23 from 7, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUGCUUAGUGGUCUUUCUGUUUUUUUUUUUUUUUUUGCUGGAAAGCCUCU hit 67 : 123033 123106 (fwd) 28.10 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..........____ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..........GUaG 50 U AGUGUUACAGCUCUUUUA+AAUUUG UAG G :U:UCU ::U U 123033 UUAGUGUUACAGCUCUUUUAGAAUUUGCUUAGUGGUCUUUCUGUUUuuuuuuuuuuUUUU 123092 >>>>>>>>>>:::: 51 GagggagacccccU 64 :: GGA:A: C+CU 123093 GCUGGAAAGCCUCU 123106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #332,sp|AC004943.2|AC004943 Homo sapiens PAC clone RP5-991G20 from 16, complete sequence. ----isReversed: 0 ----hitSequence: UCAGUGUUACAGCUUUUAGAAUUUGUCUAGCAGGCUUUCCGCUCUUCAUUGGAAAGCCCAU hit 68 : 44488 44548 (fwd) 36.94 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGC UUUUA+AAUUUGUCUAGCAGG:U:UC : U : GA:A:C 44488 UCAGUGUUACAGC--UUUUAGAAUUUGUCUAGCAGGCUUUCCGCUC-UUCAUUGGAAAGC 44544 :::: 61 cccU 64 CC+U 44545 CCAU 44548 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #727,sp|AC005516.1|AC005516 Homo sapiens Chromosome 4p16.3 BAC clone 399e10 containing Huntington's Disease gene; exons 1-67, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGCUACAGCUCUUUUGGAAUUUGUCUAGCAGGCUUUCUGGGUUUUGCUGGAAAGCCCUU hit 69 : 193046 193108 (fwd) 45.90 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUG UACAGCUCUUUU +AAUUUGUCUAGCAGG:U:UCU : U U : GGA:A:C 193046 UUAGUGCUACAGCUCUUUUGGAAUUUGUCUAGCAGGCUUUCUGGGU-UUUGCUGGAAAGC 193104 :::: 61 cccU 64 CC U 193105 CCUU 193108 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1000,sp|AC005914.1|AC005914 Homo sapiens chromosome 20, Bac clone 189 (LBNL H135), complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGUUACAACUCUUUUACAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCAGAAAGCCCCC hit 70 : 120505 120567 (fwd) 49.19 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACA CUCUUUUACAAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 120505 UUAGUGUUACAACUCUUUUACAAUUUGUCUAGCAGGCUUUCUGGUU-UUUGCCAGAAAGC 120563 :::: 61 cccU 64 CCC 120564 CCCC 120567 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1063,sp|AC006020.2|AC006020 Homo sapiens PAC clone RP5-1049N15 from 7q31.2-7q32, complete sequence. ----isReversed: 0 ----hitSequence: UGAGUACUACAGCUCUUCUAGAAUUUGCCUAGCAGGUUUUCCUGUCUUUACUAGAAACCCCUC hit 71 : 70674 70736 (fwd) 31.48 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU UACAGCUCUU UA+AAUUUG CUAGCAGGUU:UC ::: U ::: GA:ACC 70674 UGAGUACUACAGCUCUUCUAGAAUUUGCCUAGCAGGUUUUCCUGUC-UUUACUAGAAACC 70732 :::: 61 cccU 64 CC 70733 CCUC 70736 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1176,sp|AC006205.9|AC006205 Homo sapiens 12 PAC RP5-1154L15 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUUUUUACUGAAACCAAACU hit 72 : 21990 22052 (fwd) 38.56 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUA AGCUCUU UA+AAUUUGUCUAGCAG:U U U ::U U :: G A C: 21990 GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUU-UUUACUGAAACCA 22048 :::: 61 cccU 64 CU 22049 AACU 22052 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1238,sp|AC006323.3|AC006323 Homo sapiens clone RP5-1151M5, complete sequence. ----isReversed: 1 ----hitSequence: ACAGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUAUCAGAAAGCCUCC hit 73 : 26342 26282 (rev) 43.55 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A+ GUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UC : :U U : : GA:A:C 59926 --ACAGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUU-UUUAUCAGAAAGC 59982 :::: 61 cccU 64 C+C 59983 CUCC 59986 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1368,sp|AC006512.13|AC006512 Homo sapiens 12 PAC RP3-461F17 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGCUUUUUACCGGAAAGCCCCU hit 74 : 28246 28307 (fwd) 56.42 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UCU:::U U :::GGA:A:C 28246 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGCUUUUUACCGGAAAGC 28303 :::: 61 cccU 64 CCCU 28304 CCCU 28307 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1481,sp|AC007012.1|AC007012 Homo sapiens chromosome 16, clone 185J20, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGUUCUUUCAGAAUUUGUCUAGCAACCUUUCUGGUUUUUGCUAGAAAGUUCUC hit 75 : 17833 17771 (rev) 37.25 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG+UCUUU A+AAUUUGUCUAGCA :U:UC ::U U :: GA:A: 150899 UUAGUGUUACAGUUCUUUCAGAAUUUGUCUAGCAACCUUUCUGGUU-UUUGCUAGAAAGU 150957 :::: 61 cccU 64 C 150958 UCUC 150961 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1506,sp|AC007041.3|AC007041 Homo sapiens BAC clone RP11-327N17 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUUUACCGGAAAACCCAA hit 76 : 10030 9974 (rev) 33.68 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU GCUCUUUUA+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 163368 UCAGU------GCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUU-UUUACCGGAAAAC 163420 :::: 61 cccU 64 CC+ 163421 CCAA 163424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1589,sp|AC007224.5|AC007224 Homo sapiens chromosome 16 clone RP11-475D10, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUAUAGCUCUUUUAAAAUUUGUCUAGCAGGCUUUCCGGUAAAGACUGGAAAGCCCCU hit 77 : 108761 108699 (rev) 43.05 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA AGCUCUUUUA AAUUUGUCUAGCAGG:U:UC :: AG:: GA:A:C 76567 UCAGUGUUAUAGCUCUUUUAAAAUUUGUCUAGCAGGCUUUCCGGUA-AAGACUGGAAAGC 76625 :::: 61 cccU 64 CCCU 76626 CCCU 76629 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1630,sp|AC007283.3|AC007283 Homo sapiens BAC clone RP11-536I18 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUAACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGUUUUUGCCAGAAAGCCCUA hit 78 : 94615 94554 (rev) 39.71 bits :::::::::.::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUA.CAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AGUGUUA CAGCUCUUUUA+AAUUUGUCUAGCAGG:U:U: :::U U ::: :A:A: 32747 --AGUGUUAaCAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGUU-UUUGCCAGAAAG 32803 >:::: 60 ccccU 64 CCC 32804 CCCUA 32808 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1685,sp|AC007374.6|AC007374 Homo sapiens chromosome 14 clone RP11-325L17 map 14q31, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAACUCUUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUACUGAAAAGCCCCA hit 79 : 158213 158153 (rev) 39.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACA CUCUUUUACAAUUUGUCUAG AGG:U:U U :: U :: G A:A:C 32353 --AGUGUUACAACUCUUUUACAAUUUGUCUAGAAGGUUUUCUGGUC-UUUACUGAAAAGC 32409 :::: 61 cccU 64 CCC 32410 CCCA 32413 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1732,sp|AC007450.1|AC007450 Homo sapiens 12 BAC RP11-434C1 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUCUGUCUAGCAGGUUUUCCAGUCUUCACUGGAAAGCCCUU hit 80 : 148895 148835 (rev) 41.29 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAU UGUCUAGCAGG:U:UC ::: U ::: GA:A:C 61885 --AGUGUUACAGCUCUUUUAGAAUCUGUCUAGCAGGUUUUCCAGUC-UUCACUGGAAAGC 61941 :::: 61 cccU 64 CC U 61942 CCUU 61945 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1786,sp|AC007559.3|AC007559 Homo sapiens BAC clone RP11-364J6 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUCCAGCUCUUUUAGAAUCUGUCUAGCAGGCUUUCUGGUUUUUACAGGAAGGCCCCU hit 81 : 53064 53124 (fwd) 44.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUU+CAGCUCUUUUA+AAU UGUCUAGCAGG: :UCU ::U U :: GGA: :C 53064 --AGUGUUCCAGCUCUUUUAGAAUCUGUCUAGCAGGCUUUCUGGUU-UUUACAGGAAGGC 53120 :::: 61 cccU 64 CCCU 53121 CCCU 53124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1794,sp|AC007567.2|AC007567 Homo sapiens BAC clone CTB-36G2 from 7q31, complete sequence. ----isReversed: 0 ----hitSequence: UAAGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUUAGAAAACCCCCC hit 82 : 65482 65545 (fwd) 49.10 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUU+CAGCUCUUU A+AAUUUGUCUAGCAGGUU:U U :U U+ : G A:ACC 65482 UAAGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUUAGAAAACC 65541 :::: 61 cccU 64 CCC 65542 CCCC 65545 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1982,sp|AC008026.7|AC008026 Homo sapiens chromosome 17, clone RP11-464D20, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGCCCCUA hit 83 : 170610 170546 (rev) 38.28 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 U AGUGUUACAGCUCUUUUA+AA UUUGUCUAGCAGGU :UC +:: U ::+ GA: C 49575 UUAGUGUUACAGCUCUUUUAGAAuUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGC 49634 >:::: 60 ccccU 64 CCC 49635 CCCUA 49639 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2148,sp|AC008444.4|AC008444 Homo sapiens chromosome 5 clone CTC-338N15, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUCACCAUAAAAUGCCC hit 84 : 58847 58787 (rev) 38.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUA+AAUUUGUCUAGCAG U:U :::U U ::: A:A 48707 --AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUU-UUCACCAUAAAAU 48763 :::: 61 cccU 64 CC 48764 GCCC 48767 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2305,sp|AC008645.5|AC008645 Homo sapiens chromosome 5 clone CTB-181L5, complete sequence. ----isReversed: 1 ----hitSequence: UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUUUUACAAAAAGAAGAAGAAAUCCACCCC hit 85 : 44962 44889 (rev) 27.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..........____ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..........GUaG 50 U AG GUUAC GCUCUUUU +AAUUUGUCUAGCAG:U: U ++ U G AG 59429 UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUuuuacaaaaaGAAG 59488 >>>>>>>>>>:::: 51 GagggagacccccU 64 ++ A :C:CCC 59489 AAGAAAUCCACCCC 59502 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2685,sp|AC009137.8|AC009137 Homo sapiens chromosome 16 clone RP11-521L9, complete sequence. ----isReversed: 1 ----hitSequence: UGAGUGUUACAGCUCUAUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUCACUGGAAAGCACCC hit 86 : 64049 63987 (rev) 42.85 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCU UUA+AAUUUGUCUAGCAGG:U:UCU :: U :: GGA:A:C 110703 UGAGUGUUACAGCUCUAUUAGAAUUUGUCUAGCAGGUUUUCUGGUC-UUCACUGGAAAGC 110761 :::: 61 cccU 64 CC 110762 ACCC 110765 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2706,sp|AC009167.9|AC009167 Homo sapiens chromosome 16 clone RP11-82O18, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUAUCAGAAAGCCUCC hit 87 : 78044 77982 (rev) 36.02 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU UUACA CUC UUUACAAUUUGUCUAG AGG:U:UC : : U : : GA:A:C 115590 UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUC-UUUAUCAGAAAGC 115648 :::: 61 cccU 64 C+C 115649 CUCC 115652 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2744,sp|AC009244.25|AC009244 Homo sapiens chromosome 7 clone RP11-305M3, complete sequence. ----isReversed: 0 ----hitSequence: UCAGUGUUACAGGUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUACCAGAAAACCCCU hit 88 : 39314 39376 (fwd) 48.68 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG UCUUUUA+AAUUUGUCUAGCAGG:U:UC ::: U ::: GA:A:C 39314 UCAGUGUUACAGGUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUC-UUUACCAGAAAAC 39372 :::: 61 cccU 64 CCCU 39373 CCCU 39376 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2850,sp|AC009476.3|AC009476 Homo sapiens BAC clone RP11-207O14 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUAGAAUUUGUUUAGCAGGCUUUCUGGUUUUUACUGGAAAGCCCCU hit 89 : 156778 156716 (rev) 55.61 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUA+AAUUUGU UAGCAGG:U:UCU ::U U :: GGA:A:C 27629 UAAGUGUUACAGCUCUUUUAGAAUUUGUUUAGCAGGCUUUCUGGUU-UUUACUGGAAAGC 27687 :::: 61 cccU 64 CCCU 27688 CCCU 27691 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2955,sp|AC009772.14|AC009772 Homo sapiens 12 BAC RP11-372P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUUUUUAAAAGAAUUUAUAUAACAGGUUUUCAGUUUUCACUAGAAAACCACU hit 90 : 47160 47097 (rev) 27.52 bits ::::::::::::::::::::..:::::::::::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUACAGCUCUUUUA..cAAUUUGUCUAGCAGguucucucuCUGUaGGagggaga 58 UAAGUGUUACAGCU UUU A +AAUUU U UA CAGG:U:UC: ::U U+ :: :GA:A 37841 UAAGUGUUACAGCUUUUUAAaaGAAUUUAUAUAACAGGUUUUCAGUUU-UC-ACUAGAAA 37898 >>:::: 59 cccccU 64 :CC CU 37899 ACCACU 37904 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2974,sp|AC009808.8|AC009808 Homo sapiens chromosome 8, clone RP11-138K8, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUGUUGCAGCUCUUUUAGAAUUGAUCUAGCAGGUCUUCGGGUUUUUAACUGGAAACCUUCC hit 91 : 93184 93121 (rev) 35.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUU CAGCUCUUUUA+AAUU UCUAGCAGGU :UC ::U U :: GA: CC 80622 AAAGUGUUGCAGCUCUUUUAGAAUUGAUCUAGCAGGUCUUCGGGUUUUUAACUGGAAACC 80681 :::: 61 cccU 64 +C 80682 UUCC 80685 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2976,sp|AC009812.17|AC009812 Homo sapiens chromosome 8, clone RP11-48B3, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUUCCAGUGACCAGAAAAUCCUCU hit 92 : 13495 13435 (rev) 36.38 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUU GUCUAG AGG U:U C U A G A:A C 141911 GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUU-CCAGU-GACCAGA-AAAUC 141967 :::: 61 cccU 64 C+CU 141968 CUCU 141971 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2984,sp|AC009871.21|AC009871 Homo sapiens chromosome , clone RP11-86O7, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUUCCAGUGACCAGAAAAUCCUCU hit 93 : 41991 41931 (rev) 36.38 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUU GUCUAG AGG U:U C U A G A:A C 40229 GAAGUGUUACAGCUCUUUUAGAAUUCGUCUAGUAGGUUUU-CCAGU-GACCAGA-AAAUC 40285 :::: 61 cccU 64 C+CU 40286 CUCU 40289 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2992,sp|AC009898.6|AC009898 Homo sapiens chromosome 8, clone RP11-138H14, complete sequence. ----isReversed: 0 ----hitSequence: ACUGUUACAGUUCUUUCAGAAUCUGUCUAGCAAAUUUUCUGGCUUUUCCAGGAAAAUCCCC hit 94 : 120297 120357 (fwd) 35.75 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A+UGUUACAG+UCUUU A+AAU UGUCUAGCA :U:UCU : U U : GGA:A: 120297 --ACUGUUACAGUUCUUUCAGAAUCUGUCUAGCAAAUUUUCUGGCU-UUUCCAGGAAAAU 120353 :::: 61 cccU 64 CCC 120354 CCCC 120357 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3438,sp|AC010655.7|AC010655 Homo sapiens chromosome 7 clone RP11-155G14, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUUUUUGCCGGAAGGCCUCC hit 95 : 13831 13891 (fwd) 44.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUA+AAUUUG CUAGCAGG: :UCU:::U U :::GGA: :C 13831 --AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUU-UUUGCCGGAAGGC 13887 :::: 61 cccU 64 C+C 13888 CUCC 13891 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3438,sp|AC010655.7|AC010655 Homo sapiens chromosome 7 clone RP11-155G14, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGCGCUUUGAGAAUUUGUCUAGCAGGCCUUUGGGUCUUUACUGGAAAACCCCUAA hit 96 : 113260 113196 (rev) 36.07 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_.____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU.GUaGGagggagac 59 U AGUGUUACAGC CUUU A+AAUUUGUCUAGCAGG+::U:++:: UA ::++:A::+ 51831 UUAGUGUUACAGCGCUUUGAGAAUUUGUCUAGCAGGCCUUUGGGUCuUUACUGGAAAACC 51890 >:::: 60 ccccU 64 CC++ 51891 CCUAA 51895 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3475,sp|AC010748.5|AC010748 Homo sapiens BAC clone CTD-2532L16 from 16, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUAGGACAGCUCUUUUAGAAUUUGUCUAACUGGUUCCUAGUCUUCACUGGAAGCACCCUCCACUCCU hit 97 : 51866 51797 (rev) 26.20 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_......____>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU......GUaGGagg 54 AAGU ACAGCUCUUUUA+AAUUUGUCUA C GG: :::::U U G AG A:: 93594 AAAGUAGGACAGCUCUUUUAGAAUUUGUCUAACUGGUUCCUAGUCUucacugGAAGCACC 93653 >>>>>>:::: 55 gagacccccU 64 ::: :C CCU 93654 CUCCACUCCU 93663 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3519,sp|AC010894.10|AC010894 Homo sapiens BAC clone RP11-483E17 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUGAGAAUUUGUCUAGCAGGCUUUCCAGGGUUUUGCUGGAAAGCCUCU hit 98 : 89487 89424 (rev) 45.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUU A+AAUUUGUCUAGCAGG:U:UC :: U :: GA:A:C 92177 GAAGUGUUACAGCUCUUUGAGAAUUUGUCUAGCAGGCUUUCCAGGGUUUUGCUGGAAAGC 92236 :::: 61 cccU 64 C+CU 92237 CUCU 92240 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3568,sp|AC011028.11|AC011028 Homo sapiens chromosome 8, clone RP11-118J17, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCCAGUAUUCACUGGAAAGCUCCA hit 99 : 84015 84075 (fwd) 38.32 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCA G:U:UC U U GA:A:C 84015 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCA-GGUUUCCCAGUAUUCACUGGAAAGC 84071 :::: 61 cccU 64 CC 84072 UCCA 84075 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3746,sp|AC011433.5|AC011433 Homo sapiens chromosome 5 clone P1_988H11, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUAUAGCUCUUUUAGUUUGUCUAGCAGGUUUUUUGGAUUUUACCAGAAAGCCUGC hit 100 : 43659 43601 (rev) 33.89 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUA AGCUCUUUUA+ UUUGUCUAGCAGG:U:U: :::U U ::: :A:A:C 31796 --AGUGUUAUAGCUCUUUUAG--UUUGUCUAGCAGGUUUUUUGGAU-UUUACCAGAAAGC 31850 :::: 61 cccU 64 C+ 31851 CUGC 31854 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3767,sp|AC011461.5|AC011461 Homo sapiens chromosome 19 clone CTC-429L19, complete sequence. ----isReversed: 1 ----hitSequence: UUACAGCUCUUUUAGAAUUUGUCUCAGGUUUUCUGGUUCUCACUGGAAAACCCCC hit 101 : 94997 94943 (rev) 30.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 UUACAGCUCUUUUA+AAUUUGUCU CAGG:U:UCU :: U+ :: GGA:A: 5684 ------UUACAGCUCUUUUAGAAUUUGUCU--CAGGUUUUCUGGU--UCUcACUGGAAAA 5733 >:::: 60 ccccU 64 CCCC 5734 CCCCC 5738 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3781,sp|AC011475.6|AC011475 Homo sapiens chromosome 19 clone CTC-539A10, complete sequence. ----isReversed: 0 ----hitSequence: UUACAGCUCUUUUAGAAUUUGUCUCAGGUUUUCUGGUUCUCACUGGAAAACCCCC hit 102 : 176839 176893 (fwd) 30.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 UUACAGCUCUUUUA+AAUUUGUCU CAGG:U:UCU :: U+ :: GGA:A: 176839 ------UUACAGCUCUUUUAGAAUUUGUCU--CAGGUUUUCUGGU--UCUcACUGGAAAA 176888 >:::: 60 ccccU 64 CCCC 176889 CCCCC 176893 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3894,sp|AC011709.11|AC011709 Homo sapiens chromosome 18, clone RP11-500H12, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUCUUUAUCAGAAACCACCU hit 103 : 168367 168427 (fwd) 33.70 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUAC AUUU UCUAGCA GUU:UC : : U : : GA:ACC 168367 --AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUC-UUUAUCAGAAACC 168423 :::: 61 cccU 64 CCU 168424 ACCU 168427 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4107,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUGUUUUAGAAUUGUCUAGCAGUCUUUCCGGGUUUUGUCAGAAAGGCCCU hit 104 : 157927 157866 (rev) 41.88 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCU UUUUA+AA UUGUCUAGCAG :U:UC : U U : GA:A: 29922 GAAGUGUUACAGCUGUUUUAGAA-UUGUCUAGCAGUCUUUCCGGGU-UUUGUCAGAAAGG 29979 :::: 61 cccU 64 CCCU 29980 CCCU 29983 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4179,sp|AC012508.10|AC012508 Homo sapiens BAC clone RP11-521O16 from 2, complete sequence. ----isReversed: 0 ----hitSequence: UUAAGAACUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUCUACUGGAAGCUUCUU hit 105 : 41962 42019 (fwd) 26.43 bits ::::::::::.:::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUAC.AGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 UUA+ A CUCUUUUA+AAUUUGUCUAGCAG U :UCU ::U U+ :: GGA: C 41962 ------UUAAgAACUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUU-UCUACUGGAAGC 42014 >:::: 60 ccccU 64 C U 42015 UUCUU 42019 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4234,sp|AC012626.8|AC012626 Homo sapiens chromosome 16 clone CTD-2118O12, complete sequence. ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCCAUAAAAAAAAGUAU hit 106 : 134696 134751 (fwd) 36.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUA+AAUUUGUCUAGC G::U:U UA A:A:: 134696 UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCC-A---UAA----AAAAAA 134747 :::: 61 cccU 64 ++U 134748 GUAU 134751 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4307,sp|AC013414.7|AC013414 Homo sapiens BAC clone RP11-560I3 from 2, complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUCAUGGCUCUUUUAGAAUUUGUACAGCAGGUUUUCUGGUUUUUGCCGGAAAGCACCC hit 107 : 13532 13594 (fwd) 30.83 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGU A GCUCUUUUA+AAUUUGU AGCAGG:U:UCU:::U U :::GGA:A:C 13532 CAAGUGUCAUGGCUCUUUUAGAAUUUGUACAGCAGGUUUUCUGGUU-UUUGCCGGAAAGC 13590 :::: 61 cccU 64 CC 13591 ACCC 13594 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4572,sp|AC016240.23|AC016240 Homo sapiens chromosome 8, clone RP11-27N21, complete sequence. ----isReversed: 0 ----hitSequence: AAAGUGUUAACAGCUCUUGCAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUUCUGGAAAGCCUCA hit 108 : 18817 18880 (fwd) 37.52 bits :::::::::.::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUA.CAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AAGUGUUA CAGCUCUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A: 18817 AAAGUGUUAaCAGCUCUUGCAGAAUUUGUCUAGCAGGCUUUCCAGUU-UUUUCUGGAAAG 18875 >:::: 60 ccccU 64 CC+C 18876 CCUCA 18880 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4651,sp|AC016598.5|AC016598 Homo sapiens chromosome 5 clone CTD-2050E21, complete sequence. ----isReversed: 0 ----hitSequence: UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUUUUACAAAAAGAAGAAGAAAUCCACCCC hit 109 : 76452 76525 (fwd) 27.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..........____ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..........GUaG 50 U AG GUUAC GCUCUUUU +AAUUUGUCUAGCAG:U: U ++ U G AG 76452 UCAGCGUUACUGCUCUUUUUGAAUUUGUCUAGCAGGUCUUCGGGGUuuuacaaaaaGAAG 76511 >>>>>>>>>>:::: 51 GagggagacccccU 64 ++ A :C:CCC 76512 AAGAAAUCCACCCC 76525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4750,sp|AC016753.9|AC016753 Homo sapiens BAC clone RP11-513O19 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UUAAUGUUACAGCUCUUUUAGUAUUCGUCUAGCAGCCUUUCCAGUUUUUACCAGAAAGCCCCC hit 110 : 8937 8875 (rev) 39.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGUUACAGCUCUUUUA++AUU GUCUAGCAG::U:UC :::U U ::: GA:A:: 166758 UUAAUGUUACAGCUCUUUUAGUAUUCGUCUAGCAGCCUUUCCAGUU-UUUACCAGAAAGC 166816 :::: 61 cccU 64 CCC 166817 CCCC 166820 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4963,sp|AC018523.9|AC018523 Homo sapiens chromosome , clone RP11-140L24, complete sequence. ----isReversed: 1 ----hitSequence: UUAAUGUCAUAGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCUGGUUUUUGCCGGAAAGCCCUC hit 111 : 124970 124908 (rev) 35.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGU A AGCUCUUUUA AAUUUGU UAGCAGG:U:UCU:::U U :::GGA:A:C 41538 UUAAUGUCAUAGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCUGGUU-UUUGCCGGAAAGC 41596 :::: 61 cccU 64 CC 41597 CCUC 41600 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4992,sp|AC018635.10|AC018635 Homo sapiens chromosome 7 clone RP11-62J1, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUUUUUGCCGGAAGGCCUCC hit 112 : 122474 122534 (fwd) 44.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUA+AAUUUG CUAGCAGG: :UCU:::U U :::GGA: :C 122474 --AGUGUUACAGCUUUUUUAGAAUUUGCCUAGCAGGCUUUCUGGUU-UUUGCCGGAAGGC 122530 :::: 61 cccU 64 C+C 122531 CUCC 122534 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4995,sp|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B21, complete sequence. ----isReversed: 0 ----hitSequence: UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUGUGGUGGCUCACACCUGU hit 113 : 77880 77940 (fwd) 38.08 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 UAAGUGUUAC GCUCUUUUA+AAUUUGUCUAGCAGG ::: ::: U G ::: ::: 77880 UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUG---UGGu-GGCUCACA 77935 >:::: 60 ccccU 64 CC+ U 77936 CCUGU 77940 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5045,sp|AC018717.11|AC018717 Homo sapiens BAC clone RP11-505H14 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACCGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCCAAUUUUUGCCAGAAAGCUCCC hit 114 : 129124 129184 (fwd) 35.62 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUAC GCUCUUUUA AAUUUGU UAGCAGG:U:UC : :U U : : GA:A:C 129124 --AGUGUUACCGCUCUUUUAAAAUUUGUUUAGCAGGCUUUCCAAUU-UUUGCCAGAAAGC 129180 :::: 61 cccU 64 CC 129181 UCCC 129184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5167,sp|AC019047.7|AC019047 Homo sapiens BAC clone RP11-83N2 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGUGGUGCAGCUCUUUUAGAAUUUGUCCAGCAGGUUUUCUGGUUCUCACCAGAAAACGCCA hit 115 : 68002 68062 (fwd) 30.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 GUG U CAGCUCUUUUA+AAUUUGUC AGCAGG:U:UC ::: U+ ::: GA:A: 68002 --GGUGGUGCAGCUCUUUUAGAAUUUGUCCAGCAGGUUUUCUGGU--UCUcACCAGAAAA 68057 >:::: 60 ccccU 64 C CC 68058 CGCCA 68062 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5455,sp|AC021054.28|AC021054 Homo sapiens 12 BAC RP11-218M22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUUUUUACUGAAACCAAACU hit 116 : 142740 142802 (fwd) 38.56 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUA AGCUCUU UA+AAUUUGUCUAGCAG:U U U ::U U :: G A C: 142740 GAAGUGUUAGAGCUCUUCUAGAAUUUGUCUAGCAGGUUCUCUGGUU-UUUACUGAAACCA 142798 :::: 61 cccU 64 CU 142799 AACU 142802 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5772,sp|AC022291.27|AC022291 Homo sapiens 3 BAC RP11-71O21 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUCUUGCGGGAAAGUCCCC hit 117 : 12097 12157 (fwd) 40.03 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 A UGUUACAGCUCUUUUA+AAUUUGUCUAGCAG :U:UC +:: U+ ::+ GA:A: 12097 --AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGU--UCUuGCGGGAAAG 12152 >:::: 60 ccccU 64 CCC 12153 UCCCC 12157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5832,sp|AC022429.7|AC022429 Homo sapiens chromosome 10 clone CTD-2374D18, complete sequence. ----isReversed: 0 ----hitSequence: UCUGUGUUACAGUUCGUUUUGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACCAGAACUUAAU hit 118 : 48803 48864 (fwd) 30.59 bits ::::::::::::::::::::::::::::::::::.:<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA.GguucucucuCUGUaGGagggagac 59 U +GUGUUACAG+UC UUU +AAUUUGUCUAGCA G:UU:::::U U A:::::AC 48803 UCUGUGUUACAGUUCGUUUUGAAUUUGUCUAGCAgGUUUUCUGGU--UUUU-ACCAGAAC 48859 >:::: 60 ccccU 64 : +U 48860 UUAAU 48864 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6034,sp|AC023270.7|AC023270 Homo sapiens BAC clone RP11-88L24 from 2, complete sequence. ----isReversed: 1 ----hitSequence: CAUGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUGAAAAUUAAACUCAA hit 119 : 89935 89876 (rev) 39.67 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A+GUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U: U:UG G:A :A:C 32559 CAUGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUU----UCUGGUGAAAAUUAAAC 32614 :::: 61 cccU 64 C+ 32615 UCAA 32618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6053,sp|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUCUUCACUGGAAGACCACU hit 120 : 69892 69830 (rev) 41.05 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCU UUA+AAUUU UCUAGCAGG: :UCU :: U :: GGA: :C 116860 UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUC-UUCACUGGAAGAC 116918 :::: 61 cccU 64 C CU 116919 CACU 116922 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6160,sp|AC023891.28|AC023891 Homo sapiens 3 BAC RP13-81O8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGUUCUUUUAGAAUUUAUCUAGCAGGCUUUCUGCUUUUUGCUGGGAAGCCCAU hit 121 : 59462 59522 (fwd) 46.18 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAG+UCUUUUA+AAUUU UCUAGCAGG:U: CU :U U : GG :A:C 59462 --AGUGUUACAGUUCUUUUAGAAUUUAUCUAGCAGGCUUUCUGCUU-UUUGCUGGGAAGC 59518 :::: 61 cccU 64 CC+U 59519 CCAU 59522 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6239,sp|AC024221.23|AC024221 Homo sapiens 3 BAC RP11-227J5 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AAAAUGUUACAGCUCUUUUAGAAUUUAUCUAGCAGGUUUUCUGGUUACUAUAAGAGAAGGGGGAACCACCAC hit 122 : 117199 117128 (rev) 36.98 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..........____ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..........GUaG 50 AA UGUUACAGCUCUUUUA+AAUUU UCUAGCAG:U :UCU+: U G AG 15755 AAAAUGUUACAGCUCUUUUAGAAUUUAUCUAGCAGGUUUUCUGG-UuacuauaagaGAAG 15813 >>>>>>>>>>:::: 51 GagggagacccccU 64 :+GGA: C:CC+ 15814 -GGGGAACCACCAC 15826 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6256,sp|AC024270.6|AC024270 Homo sapiens chromosome 15, clone RP11-382A20, complete sequence. ----isReversed: 0 ----hitSequence: CAAUUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUUUUUUUUGUUUGUUUGUUUUU hit 123 : 77896 77958 (fwd) 31.28 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AA UGUUACAGCUCUUUUA+AAUUUGUCUAGCAG :: C : :U U : : G :: 77896 CAAUUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUUUUU-UUUGUUUGUUUGU 77954 :::: 61 cccU 64 + U 77955 UUUU 77958 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6257,sp|AC024288.9|AC024288 Homo sapiens, clone RP11-23B5, complete sequence. ----isReversed: 1 ----hitSequence: UGAGUGUUACAGCUCUUUCAGAACUCUUCUAGCAGUUUUUCCAGCUUUUACCAGAAUCUCUCC hit 124 : 122392 122330 (rev) 32.15 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUU A+AA U UCUAGCAG:U::UC :::U U ::: GA::C: 47149 UGAGUGUUACAGCUCUUUCAGAACUCUUCUAGCAGUUUUUCCAGCU-UUUACCAGAAUCU 47207 :::: 61 cccU 64 C+C 47208 CUCC 47211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6339,sp|AC024909.28|AC024909 Homo sapiens 12 BAC RP11-823E8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GAAGUGUUACAGCUCUUUUAAAAUUUAUCUAACAGGUUUUCUGUUUUUUAACUAGAAAACUCCC hit 125 : 71388 71451 (fwd) 38.54 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA AAUUU UCUA CAGG:U:UC ::U U :: GA:A:C 71388 GAAGUGUUACAGCUCUUUUAAAAUUUAUCUAACAGGUUUUCUGUUUUUUAACUAGAAAAC 71447 :::: 61 cccU 64 CC 71448 UCCC 71451 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6345,sp|AC024937.21|AC024937 Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAUGCUUUCUAGUUUUUGCCAGAAAGCCCAU hit 126 : 127461 127523 (fwd) 50.46 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCA G:U:UC :::U U ::: GA:A:C 127461 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAUGCUUUCUAGUU-UUUGCCAGAAAGC 127519 :::: 61 cccU 64 CC+U 127520 CCAU 127523 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6461,sp|AC025423.32|AC025423 Homo sapiens 12 BAC RP11-611O2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAAAAUUUGUCUAAUAGGCUUUCUGGUUUUUGCUGGAAAGCCCCC hit 127 : 37556 37496 (rev) 42.65 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA AAUUUGUCUA AGG:U:UCU ::U U :: GGA:A:C 113024 --AGUGUUACAGCUCUUUUAAAAUUUGUCUAAUAGGCUUUCUGGUU-UUUGCUGGAAAGC 113080 :::: 61 cccU 64 CCC 113081 CCCC 113084 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6482,sp|AC025448.6|AC025448 Homo sapiens chromosome 5 clone CTD-2113L7, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUGCAGCUCCUUUAGAAUUUGUCUAGCAGGUUUUAUAGGUUUUACCAGAAAACUUCC hit 128 : 108172 108110 (rev) 45.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUU CAGCUC UUUA+AAUUUGUCUAGCAGG:U:U: :: U U :: :A:A:C 56019 UAAGUGUUGCAGCUCCUUUAGAAUUUGUCUAGCAGGUUUUAUAGGU-UUUACCAGAAAAC 56077 :::: 61 cccU 64 +C 56078 UUCC 56081 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6483,sp|AC025449.6|AC025449 Homo sapiens chromosome 5 clone CTD-2124B8, complete sequence. ----isReversed: 0 ----hitSequence: UCAGUGUUACGGCUGUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACGAGACUCCCCCA hit 129 : 179991 180053 (fwd) 39.31 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUAC GCU UUUUA+AAUUUGUCUAGCAGGU: UC +::U U ::+ GA :CC 179991 UCAGUGUUACGGCUGUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUU-UUUACGAGACUCC 180049 :::: 61 cccU 64 CCC 180050 CCCA 180053 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6510,sp|AC025518.8|AC025518 Homo sapiens chromosome 17, clone RP11-713H12, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUUUCUGGUGGAAAGCUCCC hit 130 : 91242 91180 (rev) 52.60 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU ::U U+ :: GGA:A:C 85114 AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUU-UCUGGUGGAAAGC 85172 :::: 61 cccU 64 CC 85173 UCCC 85176 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6529,sp|AC025574.19|AC025574 Homo sapiens 12 BAC RP11-348M3 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGGAUUUGUCUAGCAGGCUUUCAGGUUUUUGCCAGAAACCACCC hit 131 : 39484 39546 (fwd) 48.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+ AUUUGUCUAGCAGG+U:UC::::U U ::::GA:A+C 39484 CAAGUGUUACAGCUCUUUUAGGAUUUGUCUAGCAGGCUUUCAGGUU-UUUGCCAGAAACC 39542 :::: 61 cccU 64 CC 39543 ACCC 39546 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6534,sp|AC025580.8|AC025580 Homo sapiens chromosome 15 clone RP11-519G16 map 15q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGCUUUCUGGUUUUUGCUGGAAAGCCCCC hit 132 : 113015 112953 (rev) 50.34 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUC AGCAGG:U:UCU ::U U :: GGA:A:C 87789 GAAGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGCUUUCUGGUU-UUUGCUGGAAAGC 87847 :::: 61 cccU 64 CCC 87848 CCCC 87851 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6636,sp|AC026130.15|AC026130 Homo sapiens chromosome 17, clone RP11-801J18, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUUUCUGGUGGAAAGCUCCC hit 133 : 27478 27416 (rev) 52.60 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU ::U U+ :: GGA:A:C 155432 AAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGAUUUCUGGUU-UCUGGUGGAAAGC 155490 :::: 61 cccU 64 CC 155491 UCCC 155494 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6679,sp|AC026250.16|AC026250 Homo sapiens chromosome 11, clone RP11-540A21, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGACUUUCCAGUUUUUGCCAGAAAGCCCAC hit 134 : 31328 31388 (fwd) 45.41 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG :U:UC :::U U ::: GA:A: 31328 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGACUUUCCAGUU-UUUGCCAGAAAGC 31384 :::: 61 cccU 64 CC+ 31385 CCAC 31388 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6760,sp|AC026424.5|AC026424 Homo sapiens chromosome 5 clone CTD-2174D2, complete sequence. ----isReversed: 0 ----hitSequence: UGAAUGUUACAGUUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUCUUCACCAGAAAGCUCCC hit 135 : 100557 100618 (fwd) 29.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGUUACAG U UUU A+AAUUUGUCUA CAGG:U:UC ::: U ::: GA:A:C 100557 UGAAUGUUACAG-UUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUC-UUCACCAGAAAGC 100614 :::: 61 cccU 64 CC 100615 UCCC 100618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6855,sp|AC026732.5|AC026732 Homo sapiens chromosome 5 clone CTD-2303L1, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGUUACAGUUGUUUUAGAACUUGUCUAUCAGGCUUCCCAAUUUUUGCUGGAAAGCCCCU hit 136 : 35983 36045 (fwd) 32.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG+U UUUUA+AA UUGUCUA CAGG:U::C : :U U : : G::A:C 35983 UUAGUGUUACAGUUGUUUUAGAACUUGUCUAUCAGGCUUCCCAAUU-UUUGCUGGAAAGC 36041 :::: 61 cccU 64 CCCU 36042 CCCU 36045 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6896,sp|AC026794.5|AC026794 Homo sapiens chromosome 5 clone CTD-2276B5, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCAGAAAGCCCCA hit 137 : 84116 84058 (rev) 41.25 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 42795 --AGUGUUACAGCUCUU--AGAAUUUGUCUAGCAGGCUUUCUGGUU-UUUGCCAGAAAGC 42849 :::: 61 cccU 64 CCC 42850 CCCA 42853 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6969,sp|AC027176.22|AC027176 Homo sapiens chromosome 15, clone RP11-493E3, complete sequence. ----isReversed: 0 ----hitSequence: UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUUUGUACCAGAAAACCCCU hit 138 : 57790 57846 (fwd) 33.49 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAG U UUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 57790 ------UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUU-UGUACCAGAAAAC 57842 :::: 61 cccU 64 CCCU 57843 CCCU 57846 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7327,sp|AC053481.13|AC053481 Homo sapiens chromosome 17, clone RP11-51L5, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGCCCCUA hit 139 : 12378 12314 (rev) 38.28 bits :::::::::::::::::::::::.::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAA.UUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 U AGUGUUACAGCUCUUUUA+AA UUUGUCUAGCAGGU :UC +:: U ::+ GA: C 163858 UUAGUGUUACAGCUCUUUUAGAAuUUUGUCUAGCAGGUUUUCCGAUCUUUACUGGGAAGC 163917 >:::: 60 ccccU 64 CCC 163918 CCCUA 163922 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7374,sp|AC055839.9|AC055839 Homo sapiens chromosome 17, clone RP11-807C20, complete sequence. ----isReversed: 1 ----hitSequence: AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUACCAGAAAACCCCU hit 140 : 27195 27135 (rev) 41.09 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU U ACAGCUCUUUUA+AAUUUGUCUAGCAGG U:UC :::U U ::: GA:A C 149536 --AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUU-UUUACCAGAAAAC 149592 :::: 61 cccU 64 CCCU 149593 CCCU 149596 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7445,sp|AC062037.5|AC062037 Homo sapiens BAC clone RP11-717A5 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUCACAGCUCUUCUACAAUUUGUCUAGCAGGUUUUCUGGUUCUUCGUGAGAACCCCU hit 141 : 25859 25800 (rev) 40.78 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGU ACAGCUCUU UACAAUUUGUCUAGCAGG:U UC +: U U+ :+ GA A:C 61529 --AGUGUCACAGCUCUUCUACAAUUUGUCUAGCAGGUUUUCUGG-U-UCUUCGUGAGAAC 61584 :::: 61 cccU 64 CCCU 61585 CCCU 61588 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7925,sp|AC069175.8|AC069175 Homo sapiens chromosome 11, clone RP11-995N21, complete sequence. ----isReversed: 0 ----hitSequence: AGUGGUGCAGCCCUUUUAGAAUUUUUCUGGCAGGUUUUUUGGUUUUCACCAGAAAACAUCCC hit 142 : 45137 45198 (fwd) 26.27 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUG U CAGC CUUUUA+AAUUU UCU GCAG:UU:U:U ::U U+ :: G:A:AC: 45137 --AGUGGUGCAGCCCUUUUAGAAUUUUUCUGGCAGGUUUUUUGGUUUUCACCAGAAAACA 45194 :::: 61 cccU 64 CC 45195 UCCC 45198 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8034,sp|AC069503.25|AC069503 Homo sapiens 12 BAC RP11-87C12 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUAUAGCUCUAAGAAUUUGUCUACCAGGUUUUCUGGUCAUCGCUGGAAACACCCU hit 143 : 149631 149573 (rev) 26.70 bits :::::::::::::::::.::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUU.UUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AGUGUUA AGCUCU A+AAUUUGUCUA CAG:UU:UCU :: :: GGA:AC 36950 --AGUGUUAUAGCUCU-a--AGAAUUUGUCUACCAGGUUUUCUGGUC-AUCGCUGGAAAC 37003 >:::: 60 ccccU 64 :CCCU 37004 ACCCU 37008 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8124,sp|AC073115.5|AC073115 Homo sapiens BAC clone RP11-571N3 from 7, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUAGAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGGUUUUGCUGGAAAGCAAUC hit 144 : 24709 24647 (rev) 42.38 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUA AGCUCUUUUA+AAUUUGUCUAGCAGG:U:U: :: U U :: :A:A:C 142623 UAAGUGUUAGAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGGU-UUUGCUGGAAAGC 142681 :::: 61 cccU 64 142682 AAUC 142685 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8246,sp|AC073370.7|AC073370 Homo sapiens chromosome 10 clone RP11-472G21, complete sequence. ----isReversed: 1 ----hitSequence: UUACUGUUAUGUCUUUUAGAAUUUGUCUAGAAGGCUUUCUGGUUUUUACUGGAAAGCCCCC hit 145 : 13312 13252 (rev) 36.66 bits :::::::::..::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUA..CAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggaga 58 U A+UGUUA UCUUUUA+AAUUUGUCUAG AGG:U:UCU ::U U :: GGA:A 164942 UUACUGUUAug----UCUUUUAGAAUUUGUCUAGAAGGCUUUCUGGUU-UUUACUGGAAA 164996 >>:::: 59 cccccU 64 :CCCC 164997 GCCCCC 165002 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8557,sp|AC074363.3|AC074363 Homo sapiens BAC clone RP11-31F22 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUAUUAGGCCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUCCACCAGAAAACCAUA hit 146 : 148009 147947 (rev) 31.33 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU UUA CUCUUUUA+AAUUUGUCUAGCAGG:U:UC :::U U+ ::: GA:A:C 3317 UUAGUAUUAGGCCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUU-UCCACCAGAAAAC 3375 :::: 61 cccU 64 C 3376 CAUA 3379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8605,sp|AC078817.18|AC078817 Homo sapiens 12 BAC RP11-244J10 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AAUAUGUUACAGCUCUUUUAGAAUUUGUCUAGCCAGCUUUCCGGUUUUUGCCCCCCAAAAAAGA hit 147 : 18926 18863 (rev) 31.80 bits :::::::::::::::::::::::::::::::::.::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGC.AGguucucucuCUGUaGGagggagac 59 A+ UGUUACAGCUCUUUUA+AAUUUGUCUAGC AG :U:: ::::U U G:::: ::A: 153877 AAUAUGUUACAGCUCUUUUAGAAUUUGUCUAGCcAGCUUUCCGGUUU-UUGCCCCCCAAA 153935 >:::: 60 ccccU 64 153936 AAAGA 153940 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8647,sp|AC078881.5|AC078881 Homo sapiens BAC clone RP11-130F10 from 4, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGUUAUAACUCUUCUAUAAUUUGUGUAGCAGGUUUUCCGGUCUUCACUAGAAAAACUCA hit 148 : 141731 141793 (fwd) 29.92 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA A CUCUU UA AAUUUGU UAGCAG::U:UC :: U :: GA:A:: 141731 UUAGUGUUAUAACUCUUCUAUAAUUUGUGUAGCAGGUUUUCCGGUC-UUCACUAGAAAAA 141789 :::: 61 cccU 64 C+C 141790 CUCA 141793 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8770,sp|AC079174.20|AC079174 Homo sapiens 12 BAC RP11-651L5 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUACAAUUUGUGUGGCAGGUUUCCCGGUUUUUACCAGAAAAAUCUA hit 149 : 33229 33289 (fwd) 36.10 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUACAAUUUGU U GCAG::U::C :::U U ::: G::A:: 33229 --AGUGUUACAGCUCUUUUACAAUUUGUGUGGCAGGUUUCCCGGUU-UUUACCAGAAAAA 33285 :::: 61 cccU 64 C 33286 UCUA 33289 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8959,sp|AC079780.6|AC079780 Homo sapiens BAC clone RP11-379L16 from 7, complete sequence. ----isReversed: 0 ----hitSequence: UUGGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGUGGUUUUCCGGUCUUUACCAGUAAGCCC hit 150 : 14973 15036 (fwd) 35.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U GUGUUACAGCUCUUUUA+AAUUUGUC AGCAG:: U: : GU+ : :A :: 14973 UUGGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGUGGUUUUCCGGUCUUUACCAGUAA 15032 :::: 61 cccU 64 CC 15033 GCCC 15036 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9023,sp|AC079910.18|AC079910 Homo sapiens 3 BAC RP11-418B12 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUUAUAGCUCUUUUACAAUUUGUCUAGUAGGUUUUCCAGUUUUCACCAGAAAAUCCCG hit 151 : 36407 36469 (fwd) 37.56 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUA AGCUCUUUUACAAUUUGUCUAG AG :U:UC :::U U ::: GA:A: 36407 CAAGUGUUAUAGCUCUUUUACAAUUUGUCUAGUAGGUUUUCCAGUU-UUCACCAGAAAAU 36465 :::: 61 cccU 64 CCC 36466 CCCG 36469 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9287,sp|AC084377.5|AC084377 Homo sapiens BAC clone RP11-478L9 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UGUAUUACAGCUCUUUUAGAAUUUGUCUAGAAGGCUUUCCGGUUUUUGCAGGAAAGCAACC hit 152 : 47926 47866 (rev) 40.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 +GU UUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UC ::U U :: GA:A:C 104395 --UGUAUUACAGCUCUUUUAGAAUUUGUCUAGAAGGCUUUCCGGUU-UUUGCAGGAAAGC 104451 :::: 61 cccU 64 C 104452 AACC 104455 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9519,sp|AC087579.17|AC087579 Homo sapiens chromosome 8, clone RP11-429B7, complete sequence. ----isReversed: 0 ----hitSequence: CGUGUUACAGCUCUUUUGGAAUUUGUCUAGCAGGUUUUCUGGUUUUCACUGCAAAACCCCA hit 153 : 62393 62453 (fwd) 41.39 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 GUGUUACAGCUCUUUU +AAUUUGUCUAGCAGG:U:U U ::U U :: G A:A:C 62393 --CGUGUUACAGCUCUUUUGGAAUUUGUCUAGCAGGUUUUCUGGUU-UUCACUGCAAAAC 62449 :::: 61 cccU 64 CCC 62450 CCCA 62453 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9543,sp|AC087650.12|AC087650 Homo sapiens, clone RP11-100E5, complete sequence. ----isReversed: 1 ----hitSequence: AGUAUUACAGUUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUUCAUCGGAAACUCUAC hit 154 : 156904 156844 (rev) 37.70 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU UUACAG+UCUUUUA+AAUUUGUCUAGCAG UU:UC : :U U : : GA:AC 12695 --AGUAUUACAGUUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUU-UUCAUCGGAAACU 12751 :::: 61 cccU 64 C++ 12752 CUAC 12755 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9601,sp|AC087884.18|AC087884 Homo sapiens 12 BAC RP11-416A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACCCUUC hit 155 : 158471 158408 (rev) 46.77 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAU UGUCUAGCAGG+U:UC + U U+ + GA:A+C 38272 GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACC 38331 :::: 61 cccU 64 C+ 38332 CUUC 38335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9848,sp|AC090579.6|AC090579 Homo sapiens chromosome 8, clone RP11-649G15, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUCUUCACUGGAAGACCACU hit 156 : 177362 177300 (rev) 41.05 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCU UUA+AAUUU UCUAGCAGG: :UCU :: U :: GGA: :C 8705 UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUC-UUCACUGGAAGAC 8763 :::: 61 cccU 64 C CU 8764 CACU 8767 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9850,sp|AC090587.10|AC090587 Homo sapiens chromosome 11, clone RP11-348A20, complete sequence. ----isReversed: 0 ----hitSequence: AAAGUGUCACAGCUCUUUUAGAAUUUGUCUAGCAGGGUUUCUGGUUUUCACCAGGAAACAAAAU hit 157 : 88418 88481 (fwd) 45.21 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGU ACAGCUCUUUUA+AAUUUGUCUAGCAG: U:UCU ::U U+ :: GGA:A : 88418 AAAGUGUCACAGCUCUUUUAGAAUUUGUCUAGCAGGGUUUCUGGUUUUCACCAGGAAACA 88477 :::: 61 cccU 64 +U 88478 AAAU 88481 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9996,sp|AC090944.2|AC090944 Homo sapiens chromosome 3 clone RP11-238A9 map 3p, complete sequence. ----isReversed: 0 ----hitSequence: UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGCUGGAAAACCCCUUUUUUAAACUCCU hit 158 : 71381 71440 (fwd) 29.15 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGC G U : ::: + ::: : A C 71381 UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGC--GCUGGAAAACC--CCUUUUUUAAAC 71436 :::: 61 cccU 64 CCU 71437 UCCU 71440 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #36,sp|AC091043.12|AC091043 Homo sapiens chromosome 18, clone RP11-595B24, complete sequence. ----isReversed: 1 ----hitSequence: UGAGUGUUACAGCUCUUUUUGAAUUUGUCUAGCAUGCUUUCUGCUUUUUACUGGAAAGUGCCC hit 159 : 100269 100207 (rev) 38.76 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUU +AAUUUGUCUAGCA :U:UCU :U U : GGA:A: 108042 UGAGUGUUACAGCUCUUUUUGAAUUUGUCUAGCAUGCUUUCUGCUU-UUUACUGGAAAGU 108100 :::: 61 cccU 64 CC 108101 GCCC 108104 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #97,sp|AC091180.20|AC091180 Homo sapiens chromosome 17, clone RP11-1079K10, complete sequence. ----isReversed: 1 ----hitSequence: UAAAUGUUUCAACUCUGCUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUGUGGAAAAACCCCCA hit 160 : 32988 32925 (rev) 33.78 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAA UGUU CA CUCU UA+AAUUUGUCUAGCAGGUU:U +:: U G::+ A:ACC 150703 UAAAUGUUUCAACUCUGCUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUGUGGAAAAACC 150762 :::: 61 cccU 64 CCC 150763 CCCA 150766 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #110,sp|AC091212.17|AC091212 Homo sapiens 3 BAC CTD-2021J15 (CalTech Clone Library D) complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGAUCUUUUAGAAUUUGUCUAGUACAUUUUCCAGUUUUCACCAGGAAUCUGCCU hit 161 : 23064 23125 (fwd) 33.22 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAG UCUUUUA+AAUUUGUCUAG A U::UC :::U U+ ::: GA::C 23064 --AGUGUUACAGAUCUUUUAGAAUUUGUCUAGUACAUUUUCCAGUUUUCACCAGGAAUCU 23121 :::: 61 cccU 64 CCU 23122 GCCU 23125 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #653,sp|AC092473.3|AC092473 Homo sapiens chromosome X clone RP11-126D17 map Xp11.4 complete sequence. ----isReversed: 1 ----hitSequence: UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUUUUUACUGGAAAGCCCCA hit 162 : 42447 42391 (rev) 28.58 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAG+UCUUUUA+ AUUUG CUAGCAGG:U:U: ::U U :: :A:A:C 95617 ------UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUU-UUUACUGGAAAGC 95669 :::: 61 cccU 64 CCC 95670 CCCA 95673 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #741,sp|AC092622.2|AC092622 Homo sapiens BAC clone RP11-254O14 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UUACAGCUUUUUCAGAAUUUGUCCAGCAGGUUUUCUGGUUUUCACUGGAAAAUACCU hit 163 : 8467 8411 (rev) 33.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAGCU UUU A+AAUUUGUC AGCAG :U:UCU ::U U :: GGA:A: 11065 ------UUACAGCUUUUUCAGAAUUUGUCCAGCAGGUUUUCUGGUU-UUCACUGGAAAAU 11117 :::: 61 cccU 64 CCU 11118 ACCU 11121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #805,sp|AC092687.3|AC092687 Homo sapiens BAC clone RP11-791G15 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AUACAGCUUUUUUAGAAUUUGUCUAGGAGGUUUUCUGGUUUUCACCAGAACCAACCC hit 164 : 71239 71295 (fwd) 27.44 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UACAGCU UUUUA+AAUUUGUCUAG AG:U :UC :::U U ::: GA: C: 71239 ------AUACAGCUUUUUUAGAAUUUGUCUAGGAGGUUUUCUGGUU-UUCACCAGAACCA 71291 :::: 61 cccU 64 CC 71292 ACCC 71295 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #805,sp|AC092687.3|AC092687 Homo sapiens BAC clone RP11-791G15 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGUGUUACAGCUUAUUUAGAAUUUGUCUAGCAGAUUUUCCAGCUUUUACUGGAAGCCCCCU hit 165 : 142593 142533 (rev) 36.90 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 GUGUUACAGCU UUUA+AAUUUGUCUAGCAG U :UC :::U U ::: GA: C 46582 --GGUGUUACAGCUUAUUUAGAAUUUGUCUAGCAGAUUUUCCAGCU-UUUACUGGAAGCC 46638 :::: 61 cccU 64 CCCU 46639 CCCU 46642 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1123,sp|AC093183.3|AC093183 Homo sapiens chromosome 7 clone RP11-786I1, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUGUGGUGGCUCACACCUGU hit 166 : 157888 157828 (rev) 38.08 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 UAAGUGUUAC GCUCUUUUA+AAUUUGUCUAGCAGG ::: ::: U G ::: ::: 16246 UAAGUGUUACUGCUCUUUUAGAAUUUGUCUAGCAGGGCUGGGUG---UGGu-GGCUCACA 16301 >:::: 60 ccccU 64 CC+ U 16302 CCUGU 16306 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1128,sp|AC093206.2|AC093206 Homo sapiens chromosome 5 clone CTC-448D22, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUCACCAUAAAAUGCCC hit 167 : 119291 119351 (fwd) 38.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUA+AAUUUGUCUAGCAG U:U :::U U ::: A:A 119291 --AGUGUUACAGCUUUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUU-UUCACCAUAAAAU 119347 :::: 61 cccU 64 CC 119348 GCCC 119351 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1178,sp|AC093283.3|AC093283 Homo sapiens chromosome 5 clone RP11-428C6, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCCCUUUUCAAAUUUGUCUAGCAGGCUUUUUGGGUUAGGUCAGAAAGUCCCC hit 168 : 44801 44739 (rev) 38.81 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGC CUUUU AAUUUGUCUAGCAG :U:U: : U UAG : :A:A: 161454 UAAGUGUUACAGCCCUUUUCAAAUUUGUCUAGCAGGCUUUUUGGGU-UAGGUCAGAAAGU 161512 :::: 61 cccU 64 CCC 161513 CCCC 161516 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1324,sp|AC093575.2|AC093575 Homo sapiens chromosome 1 clone RP11-40C18, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUUUUUGCUGGAAAGCCCAG hit 169 : 158650 158590 (rev) 50.80 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU:::U U :::GGA:A:C 589 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUU-UUUGCUGGAAAGC 645 :::: 61 cccU 64 CC+ 646 CCAG 649 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1447,sp|AC093748.3|AC093748 Homo sapiens BAC clone RP11-29P18 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GAAAUGUAACAGCCCUUUUAGAAUUUGUCUAGCAGGGUUUCUGGUGGUACCAGCAGACUCCAC hit 170 : 31465 31527 (fwd) 30.86 bits ::::::::::::::::::::::::::::::::::..:<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA..GguucucucuCUGUaGGagggaga 58 AA UGU ACAGC CUUUUA+AAUUUGUCUAGCA G:UUCU :: GUA :: AGA 31465 GAAAUGUAACAGCCCUUUUAGAAUUUGUCUAGCAggGUUUCUGGUG--GUAC-CAGCAGA 31521 >>:::: 59 cccccU 64 C:CC+ 31522 CUCCAC 31527 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1547,sp|AC093850.2|AC093850 Homo sapiens BAC clone RP11-489P15 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AAUGUUAAAGCUCUUUUAGAAUUUGUCUAGCAGGCAAAUAAAUAAAUAAAAUAAAAUAAAUAAU hit 171 : 34554 34491 (rev) 26.75 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_____>>.>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCUGUaGGa.gggaga 58 A UGUUA+AGCUCUUUUA+AAUUUGUCUAGCAG: : ::: U: UA :A ::: : 97174 --AAUGUUAAAGCUCUUUUAGAAUUUGUCUAGCAGGCAAAUAAaUAAAUAAAAuAAAAUA 97231 >>:::: 59 cccccU 64 : +U 97232 AAUAAU 97237 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1599,sp|AC093903.3|AC093903 Homo sapiens BAC clone RP11-733C7 from 4, complete sequence. ----isReversed: 0 ----hitSequence: CAGCUCUUUCAGAAUUUGUCUAGCAGGAUUUCUAGUUUUCACCGGAAAACCUCC hit 172 : 113071 113124 (fwd) 31.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 CAGCUCUUU A+AAUUUGUCUAGCAGG:U:UCU:::U U :::GGA:A:C 113071 ---------CAGCUCUUUCAGAAUUUGUCUAGCAGGAUUUCUAGUU-UUCACCGGAAAAC 113120 :::: 61 cccU 64 C+C 113121 CUCC 113124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1649,sp|AC095030.2|AC095030 Homo sapiens chromosome 1 clone RP11-375A5, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUUUUUGCUGGAAAGCCCAG hit 173 : 43279 43219 (rev) 50.80 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU:::U U :::GGA:A:C 98729 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUAGUU-UUUGCUGGAAAGC 98785 :::: 61 cccU 64 CC+ 98786 CCAG 98789 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2090,sp|AC098481.2|AC098481 Homo sapiens chromosome 3 clone RP11-349E16, complete sequence. ----isReversed: 0 ----hitSequence: AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGGAGGUCUUUACCAGAAAGCCUCC hit 174 : 206246 206310 (fwd) 38.42 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..____..>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..GUaG..Gaggga 56 A UGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UC :: GU+ :: GA 206246 --AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGG-agGUCUuuACCAGA 206302 >>>>:::: 57 gacccccU 64 :A:CC+C 206303 AAGCCUCC 206310 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2200,sp|AC098869.3|AC098869 Homo sapiens BAC clone RP11-588L15 from 4, complete sequence. ----isReversed: 0 ----hitSequence: UUUGUGUUACAGCUGCUUUAGAAUUUGUCUAGCAGACUUUCCUGUUUUUAACAGAAAGCCCCC hit 175 : 180532 180594 (fwd) 39.35 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U +GUGUUACAGCU UUUA+AAUUUGUCUAGCAG :U:UC +U U U A+ GA:A: 180532 UUUGUGUUACAGCUGCUUUAGAAUUUGUCUAGCAGACUUUC-CUGUUUUUAACAGAAAGC 180590 :::: 61 cccU 64 CCC 180591 CCCC 180594 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2267,sp|AC099397.5|AC099397 Homo sapiens BAC clone RP11-247K9 from 4, complete sequence. ----isReversed: 1 ----hitSequence: UCCGUGUUACAGCUCUUUUAGAAUUCAUCUAGCAGGUUUUCCAGUCUUCGAUAAAUGUGU hit 176 : 14602 14543 (rev) 27.79 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U GUGUUACAGCUCUUUUA+AAUU UCUAGCAG::U UC +: GU+ :+ GA A:: 85406 UCCGUGUUACAGCUCUUUUAGAAUUCAUCUAGCAGGUUUUC-CA--GUCU-UC-GAUAAA 85460 :.::: 61 c.ccU 64 + U 85461 UgUGU 85465 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2344,sp|AC099654.5|AC099654 Homo sapiens BAC clone RP11-1217F2 from 7, complete sequence. ----isReversed: 0 ----hitSequence: AAGGUGUUACAGCUCUUUCAGAAUUUGUCUAGUAUGUUUUCCGGUUUUCACUCCCAGGUAGGCUCGGGAAGAGGCA hit 177 : 99740 99815 (fwd) 28.48 bits :::::::::::::::::::::::::::::::::::<<<<<<<<.<<_..........___ 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucuc.uCU..........GUa 49 A GUGUUACAGCUCUUU A+AAUUUGUCUAG A ::U: C : ::U GUA 99740 AAGGUGUUACAGCUCUUUCAGAAUUUGUCUAGUAUGUUUUCCGgUUUucacucccagGUA 99799 _>>.>>>>>>>>:::: 50 GGa.gggagacccccU 64 G:: : G :A:: C 99800 GGCuCGGGAAGAGGCA 99815 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2446,sp|AC100789.2|AC100789 Homo sapiens chromosome X, clone RP11-907I17, complete sequence. ----isReversed: 1 ----hitSequence: UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUUUUUACUGGAAAGCCCCA hit 178 : 114892 114836 (rev) 28.58 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAG+UCUUUUA+ AUUUG CUAGCAGG:U:U: ::U U :: :A:A:C 68562 ------UUACAGUUCUUUUAGGAUUUGCCUAGCAGGUUUUUCGGUU-UUUACUGGAAAGC 68614 :::: 61 cccU 64 CCC 68615 CCCA 68618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2528,sp|AC103559.2|AC103559 Homo sapiens chromosome 3 clone RP11-286L5, complete sequence. ----isReversed: 0 ----hitSequence: AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGGAGGUCUUUACCAGAAAGCCUCC hit 179 : 82492 82556 (fwd) 38.42 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_..____..>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCU..GUaG..Gaggga 56 A UGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UC :: GU+ :: GA 82492 --AAUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGG-agGUCUuuACCAGA 82548 >>>>:::: 57 gacccccU 64 :A:CC+C 82549 AAGCCUCC 82556 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2554,sp|AC103693.2|AC103693 Homo sapiens chromosome 18, clone CTD-2522C24, complete sequence. ----isReversed: 0 ----hitSequence: UAAAUGUUACAGUUCUUUUAGAAUCUGUCUAGCGAAUUUUCUAGUGGGAAACCUUCC hit 180 : 59274 59330 (fwd) 30.57 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAA UGUUACAG+UCUUUUA+AAU UGUCUAGC G: :U:UC UAG GG:A: :C 59274 UAAAUGUUACAGUUCUUUUAGAAUCUGUCUAGC--GAAUUUUC----UAG-UGGGAAACC 59326 :::: 61 cccU 64 +C 59327 UUCC 59330 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2698,sp|AC104046.2|AC104046 Homo sapiens chromosome 15, clone CTD-2262B20, complete sequence. ----isReversed: 0 ----hitSequence: CAAGUGUUACAGAUCUUUUAGAAUCUGUCUAGCAGGUUUUCUGCUUUUCACUGGAAGACUCCC hit 181 : 41696 41758 (fwd) 37.95 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAG UCUUUUA+AAU UGUCUAGCAGG: :UCU :U U : GGA: :C 41696 CAAGUGUUACAGAUCUUUUAGAAUCUGUCUAGCAGGUUUUCUGCUU-UUCACUGGAAGAC 41754 :::: 61 cccU 64 CC 41755 UCCC 41758 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2787,sp|AC104190.3|AC104190 Homo sapiens chromosome 3 clone RP11-502L5, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACGGCUCUUUUAAAAUUUGUCUCGCAGGCUUUCCGGUUUUUGCCAGAAAGCCCUU hit 182 : 69378 69438 (fwd) 42.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUAC GCUCUUUUA AAUUUGUCU GCAGG:U:UC :::U U ::: GA:A:C 69378 --AGUGUUACGGCUCUUUUAAAAUUUGUCUCGCAGGCUUUCCGGUU-UUUGCCAGAAAGC 69434 :::: 61 cccU 64 CC U 69435 CCUU 69438 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2891,sp|AC104451.2|AC104451 Homo sapiens chromosome 3 clone RP11-632N2, complete sequence. ----isReversed: 0 ----hitSequence: AAAGGUUACAGGCUCUUUUAGAAUUUGUCUACCAGGCUUUCUGGUUUUUACCGGAAAGCCCCG hit 183 : 39612 39674 (fwd) 34.78 bits ::::::::::::.:::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAG.CUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AAG UUACAG CUCUUUUA+AAUUUGUCUA CAGG:U:UCU:::U U :::GGA:A: 39612 AAAGG-UUACAGgCUCUUUUAGAAUUUGUCUACCAGGCUUUCUGGUU-UUUACCGGAAAG 39669 >:::: 60 ccccU 64 CCCC 39670 CCCCG 39674 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3438,sp|AC106763.2|AC106763 Homo sapiens chromosome 5 clone RP11-21C10, complete sequence. ----isReversed: 0 ----hitSequence: UGAGUGUUAUAGCUUACUUAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCUGGAAAGCCGAA hit 184 : 20597 20657 (fwd) 27.96 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA AGCU UUA AUUUGUCUAGCAGG:U:UCU ::U U :: GGA:A:C 20597 UGAGUGUUAUAGCUUACUUA--AUUUGUCUAGCAGGCUUUCUGGUU-UUUGCUGGAAAGC 20653 :::: 61 cccU 64 C + 20654 CGAA 20657 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3438,sp|AC106763.2|AC106763 Homo sapiens chromosome 5 clone RP11-21C10, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUAUAGCUCUUUUAGUUUGUCUAGCAGGUUUUUUGGAUUUUACCAGAAAGCCUGC hit 185 : 104198 104256 (fwd) 33.89 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUA AGCUCUUUUA+ UUUGUCUAGCAGG:U:U: :::U U ::: :A:A:C 104198 --AGUGUUAUAGCUCUUUUAG--UUUGUCUAGCAGGUUUUUUGGAU-UUUACCAGAAAGC 104252 :::: 61 cccU 64 C+ 104253 CUGC 104256 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3718,sp|AC107965.4|AC107965 Homo sapiens chromosome 8, clone CTD-2332A4, complete sequence. ----isReversed: 1 ----hitSequence: ACUGUUACAGUUCUUUCAGAAUCUGUCUAGCAAAUUUUCUGGCUUUUCCAGGAAAAUCCCC hit 186 : 95264 95204 (rev) 35.75 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A+UGUUACAG+UCUUU A+AAU UGUCUAGCA :U:UCU : U U : GGA:A: 16769 --ACUGUUACAGUUCUUUCAGAAUCUGUCUAGCAAAUUUUCUGGCU-UUUCCAGGAAAAU 16825 :::: 61 cccU 64 CCC 16826 CCCC 16829 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3734,sp|AC107993.9|AC107993 Homo sapiens chromosome 17, clone RP11-194N12, complete sequence. ----isReversed: 1 ----hitSequence: CAAGUAUUACAGCUCUUUUAGAAUCCGUCUAGCAGGUUUUCCAGUUUUUACCAGAAAACUCUC hit 187 : 112662 112600 (rev) 34.21 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGU UUACAGCUCUUUUA+AAU GUCUAGCAGG:U:UC :::U U ::: GA:A:C 60947 CAAGUAUUACAGCUCUUUUAGAAUCCGUCUAGCAGGUUUUCCAGUU-UUUACCAGAAAAC 61005 :::: 61 cccU 64 C 61006 UCUC 61009 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3776,sp|AC108047.4|AC108047 Homo sapiens BAC clone RP11-318K4 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGCUUUUCCAGGAAAACCCCU hit 188 : 15326 15273 (rev) 42.72 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG::U:UC AG GA:A:: 37871 UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGCUUUUC------CAG----GAAAAC 37920 :::: 61 cccU 64 CCCU 37921 CCCU 37924 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3929,sp|AC108471.3|AC108471 Homo sapiens BAC clone RP11-539G18 from 4, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUUUUGCUGGAAAGCUCCC hit 189 : 9788 9848 (fwd) 48.68 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UC ::U U :: GA:A:C 9788 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUU-UUUGCUGGAAAGC 9844 :::: 61 cccU 64 CC 9845 UCCC 9848 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4714,sp|AC113551.3|AC113551 Homo sapiens chromosome 18, clone RP11-208K1, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUCUUUAUCAGAAACCACCU hit 190 : 82802 82742 (rev) 33.70 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUAC AUUU UCUAGCA GUU:UC : : U : : GA:ACC 96480 --AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUC-UUUAUCAGAAACC 96536 :::: 61 cccU 64 CCU 96537 ACCU 96540 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4930,sp|AC114967.2|AC114967 Homo sapiens chromosome 5 clone RP11-301A5, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGUUGUUUUAGAACUUGUCUAUCAGGCUUCCCAAUUUUUGCUGGAAAGCCCCU hit 191 : 4473 4411 (rev) 32.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG+U UUUUA+AA UUGUCUA CAGG:U::C : :U U : : G::A:C 210836 UUAGUGUUACAGUUGUUUUAGAACUUGUCUAUCAGGCUUCCCAAUU-UUUGCUGGAAAGC 210894 :::: 61 cccU 64 CCCU 210895 CCCU 210898 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5056,sp|AC116348.3|AC116348 Homo sapiens chromosome 16 clone RP11-297C4, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGUUUUUUGCUAAAAUCCUCCA hit 192 : 38268 38328 (fwd) 43.00 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG+::U ::U U :: A::+C 38268 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGUUU-UUUGCUAAAAUCC 38324 :::: 61 cccU 64 CC 38325 UCCA 38328 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5706,sp|AC124916.3|AC124916 Homo sapiens chromosome 3 clone RP11-1029M24, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACGGCUCUUUUAAAAUUUGUCUCGCAGGCUUUCCGGUUUUUGCCAGAAAGCCCUU hit 193 : 205125 205185 (fwd) 42.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUAC GCUCUUUUA AAUUUGUCU GCAGG:U:UC :::U U ::: GA:A:C 205125 --AGUGUUACGGCUCUUUUAAAAUUUGUCUCGCAGGCUUUCCGGUU-UUUGCCAGAAAGC 205181 :::: 61 cccU 64 CC U 205182 CCUU 205185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5792,sp|AC125796.2|AC125796 Homo sapiens chromosome 16 clone RP11-420N3, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUGUUACAGUUUUUUCAGAAUUUGUCUAGCAACCUUUCUGGUUUUUGCUAGAAAGUUCUC hit 194 : 22681 22743 (fwd) 35.60 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG+U UUU A+AAUUUGUCUAGCA :U:UC ::U U :: GA:A: 22681 UUAGUGUUACAGUUUUUUCAGAAUUUGUCUAGCAACCUUUCUGGUU-UUUGCUAGAAAGU 22739 :::: 61 cccU 64 C 22740 UCUC 22743 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6124,sp|AC130650.2|AC130650 Homo sapiens chromosome 16 clone CTA-276F8, complete sequence. ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCCAUAAAAAAAAGUAU hit 195 : 15574 15629 (fwd) 36.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUA+AAUUUGUCUAGC G::U:U UA A:A:: 15574 UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCC-A---UAA----AAAAAA 15625 :::: 61 cccU 64 ++U 15626 GUAU 15629 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6483,sp|AC135335.3|AC135335 Homo sapiens chromosome 18, clone RP13-1026H1, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUCUUUAUCAGAAACCACCU hit 196 : 133490 133430 (rev) 33.70 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUAC AUUU UCUAGCA GUU:UC : : U : : GA:ACC 22009 --AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUC-UUUAUCAGAAACC 22065 :::: 61 cccU 64 CCU 22066 ACCU 22069 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6853,sp|AC139264.2|AC139264 Homo sapiens chromosome 16 clone RP11-1353E1, complete sequence. ----isReversed: 0 ----hitSequence: UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUAUCAGAAAGCCUCC hit 197 : 7472 7534 (fwd) 36.02 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGU UUACA CUC UUUACAAUUUGUCUAG AGG:U:UC : : U : : GA:A:C 7472 UUAGUAUUACAACUCCUUUACAAUUUGUCUAGAAGGUUUUCUGGUC-UUUAUCAGAAAGC 7530 :::: 61 cccU 64 C+C 7531 CUCC 7534 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----sequence: #3905,sp|AF064476.1|AF064476 Homo sapiens natural resistance-associated macrophage protein 2 (NRAMP2) gene, exon 2. ----isReversed: 1 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACCCUUC hit 198 : 141 78 (rev) 46.77 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAU UGUCUAGCAGG+U:UC + U U+ + GA:A+C 484 GAAGUGUUACAGCUCUUUUAGAAUGUGUCUAGCAGGCUUUCUGGCUUUCACUGUGAAACC 543 :::: 61 cccU 64 C+ 544 CUUC 547 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----sequence: #6436,sp|AF085939.1|AF085939 Homo sapiens full length insert cDNA clone YR67A12. ----isReversed: 1 ----hitSequence: AGUGUUGCAGCUCUUACAGAAUUUGUCUAGCAGGUUUUCCAGUCUUUACCAGAAAUGCCCCC hit 199 : 149 88 (rev) 30.50 bits :::::::::::::::::::::::::::::::::::<<<<<<.<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucuc.ucuCUGUaGGagggagac 59 AGUGUU CAGCUCUU A+AAUUUGUCUAGCAGG:::UC :+U U UA A+: A::: 239 --AGUGUUGCAGCUCUUACAGAAUUUGUCUAGCAGGUUUUCcAGUCUUUACCAGA-AAUG 295 >:::: 60 ccccU 64 CCCC 296 CCCCC 300 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----sequence: #8611,sp|AF097649.1|AF097649 Homo sapiens chromosome 7qtelo BAC E5, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUCUUUAUCAGAAACCACCU hit 200 : 27574 27634 (fwd) 33.70 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUAC AUUU UCUAGCA GUU:UC : : U : : GA:ACC 27574 --AGUGUUACAGCUUUUUUACGAUUUAUCUAGCAAGUUUUCCAGUC-UUUAUCAGAAACC 27630 :::: 61 cccU 64 CCU 27631 ACCU 27634 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #5041,sp|AF165926.2|AF165926 Homo sapiens chromosome 5p13 BAC clone djn085o06 containing NUP155 gene, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGUUACGGCUGUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACGAGACUCCCCCA hit 201 : 112225 112163 (rev) 39.31 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUAC GCU UUUUA+AAUUUGUCUAGCAGGU: UC +::U U ::+ GA :CC 53393 UCAGUGUUACGGCUGUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUU-UUUACGAGACUCC 53451 :::: 61 cccU 64 CCC 53452 CCCA 53455 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #5542,sp|AF172277.1|AF172277 Homo sapiens 7q31 clones RP11-267O17 and RP11-256L2 including NRCAM and LAMB1R genes, complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUUAGAAAACCCCCC hit 202 : 18142 18079 (rev) 49.10 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUU+CAGCUCUUU A+AAUUUGUCUAGCAGGUU:U U :U U+ : G A:ACC 208913 UAAGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUUAGAAAACC 208972 :::: 61 cccU 64 CCC 208973 CCCC 208976 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #6652,sp|AF187320.1|AF187320 Homo sapiens transferrin receptor (TFRC) gene, complete cds. ----isReversed: 1 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAUGCUUUCUAGUUUUUGCCAGAAAAGCCCAU hit 203 : 9294 9231 (rev) 52.01 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCA G:U:U U:::U U G:::G A:A:C 23536 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAUGCUUUCUAGUUUUUGCCAGAAAAGC 23595 :::: 61 cccU 64 CC+U 23596 CCAU 23599 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #7967,sp|AF201337.3|AF201337 Homo sapiens chromosome 8 clone GS1-44D20 map 8q11-q13, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUGUUGCAGCUCUUUUAGAAUUGAUCUAGCAGGUCUUCGGGUUUUUAACUGGAAACCUUCC hit 204 : 39682 39619 (rev) 35.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUU CAGCUCUUUUA+AAUU UCUAGCAGGU :UC ::U U :: GA: CC 53871 AAAGUGUUGCAGCUCUUUUAGAAUUGAUCUAGCAGGUCUUCGGGUUUUUAACUGGAAACC 53930 :::: 61 cccU 64 +C 53931 UUCC 53934 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----sequence: #885,sp|AF241726.2|AF241726 Homo sapiens chromosome X clone RP5-819E23, RP1-137P19 map Xp11.4, complete sequence. ----isReversed: 0 ----hitSequence: AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUUUUACCAGAAAGCCCCC hit 205 : 227979 228039 (fwd) 47.27 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A UGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 227979 --AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUU-UUUACCAGAAAGC 228035 :::: 61 cccU 64 CCC 228036 CCCC 228039 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----sequence: #886,sp|AF241727.1|AF241727 Homo sapiens PAC 972B16 chromosome X map Xp11.4, complete sequence. ----isReversed: 0 ----hitSequence: AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUUUUACCAGAAAGCCCCC hit 206 : 39797 39857 (fwd) 47.27 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A UGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 39797 --AAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUU-UUUACCAGAAAGC 39853 :::: 61 cccU 64 CCC 39854 CCCC 39857 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----sequence: #5319,sp|AF298548.1|AF298548 Homo sapiens caspase recruitment domain protein 7 mRNA, complete cds. ----isReversed: 0 ----hitSequence: AGUAUCACUGCUCUUUUAGAAUUUGUCUAGCAGACUUUCCAGUUUUUACCAGAAAACCCCU hit 207 : 4934 4994 (fwd) 32.50 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU U AC GCUCUUUUA+AAUUUGUCUAGCAG U:UC :::U U ::: GA:A 4934 --AGUAUCACUGCUCUUUUAGAAUUUGUCUAGCAGACUUUCCAGUU-UUUACCAGAAAAC 4990 :::: 61 cccU 64 CCCU 4991 CCCU 4994 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----sequence: #5995,sp|AF310105.1|AF310105 Homo sapiens NALP1 mRNA, complete cds. ----isReversed: 0 ----hitSequence: AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUACCAGAAAACCCCU hit 208 : 5293 5353 (fwd) 41.09 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU U ACAGCUCUUUUA+AAUUUGUCUAGCAGG U:UC :::U U ::: GA:A C 5293 --AGUAUCACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUU-UUUACCAGAAAAC 5349 :::: 61 cccU 64 CCCU 5350 CCCU 5353 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----sequence: #5781,sp|AF527417.1|AF527417 Homo sapiens cell division cycle 25A (CDC25A) gene, complete cds. ----isReversed: 1 ----hitSequence: AGUGUUACGGCUCUUUUAAAAUUUGUCUCGCAGGCUUUCCGGUUUUUGCCAGAAAGCCCUU hit 209 : 8691 8631 (rev) 42.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUAC GCUCUUUUA AAUUUGUCU GCAGG:U:UC :::U U ::: GA:A:C 23178 --AGUGUUACGGCUCUUUUAAAAUUUGUCUCGCAGGCUUUCCGGUU-UUUGCCAGAAAGC 23234 :::: 61 cccU 64 CC U 23235 CCUU 23238 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----sequence: #6536,sp|AK055252.1|AK055252 Homo sapiens cDNA FLJ30690 fis, clone FCBBF2000576. ----isReversed: 1 ----hitSequence: UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUUUGUACCAGAAAACCCCU hit 210 : 1477 1421 (rev) 33.49 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAG U UUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 976 ------UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUU-UGUACCAGAAAAC 1028 :::: 61 cccU 64 CCCU 1029 CCCU 1032 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----sequence: #9574,sp|AK074123.1|AK074123 Homo sapiens mRNA for FLJ00195 protein. ----isReversed: 1 ----hitSequence: AGUGUUAUAGCUCUUUUAGUUUGUCUAGCAGGUUUUUUGGAUUUUACCAGAAAGCCUGC hit 211 : 3305 3247 (rev) 33.89 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUA AGCUCUUUUA+ UUUGUCUAGCAGG:U:U: :::U U ::: :A:A:C 1078 --AGUGUUAUAGCUCUUUUAG--UUUGUCUAGCAGGUUUUUUGGAU-UUUACCAGAAAGC 1132 :::: 61 cccU 64 C+ 1133 CUGC 1136 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #2690,sp|AK092069.1|AK092069 Homo sapiens cDNA FLJ34750 fis, clone MESAN2009580, weakly similar to PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 10 (EC 5.2.1.8). ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCCGGUUUUUGCAGGAAAGCCCCC hit 212 : 1506 1446 (rev) 47.61 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UC ::U U :: GA:A:C 1803 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCCGGUU-UUUGCAGGAAAGC 1859 :::: 61 cccU 64 CCC 1860 CCCC 1863 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #9462,sp|AL133259.24|AL133259 Human DNA sequence from clone RP1-258E1 on chromosome 6 Contains part of the gene for CD83 antigen (activated B lymphocytes, im ----isReversed: 0 ----hitSequence: UGAGUGUGACAGCUCUUUUAGAAUUUAUCUAACAGGGUUUCCAGUUUUCACUGUAUACCAUC hit 213 : 34363 34424 (fwd) 28.11 bits ::::::::::::::::::::::::::::::::::.:<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA.GguucucucuCUGUaGGagggagac 59 U AGUGU ACAGCUCUUUUA+AAUUU UCUA CA GG::::C::U U A::G:::: 34363 UGAGUGUGACAGCUCUUUUAGAAUUUAUCUAACAgGGUUUCCAGU--UUUC-ACUGUAUA 34419 >:::: 60 ccccU 64 CC 34420 CCAUC 34424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #9685,sp|AL136086.8|AL136086 Human DNA sequence from clone GS1-56G5 on chromosome 1 Contains ESTs, STSs, GSSs and a CpG island. Contains part of a novel gen ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUUUUUGCUGGAAAGCCCAA hit 214 : 69776 69714 (rev) 50.20 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 33572 UCAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUU-UUUGCUGGAAAGC 33630 :::: 61 cccU 64 CC+ 33631 CCAA 33634 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #9713,sp|AL136120.8|AL136120 Human DNA sequence from clone RP5-975D15 on chromosome 1p31.3-32.2 ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCUCUUUUCACUGGAAGACUCC hit 215 : 102265 102207 (rev) 42.91 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG::U::C +U U A+ G::A:: 1934 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCUCU--UUUC-ACUGGAAGA 1988 :::: 61 cccU 64 C+C 1989 CUCC 1992 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #9880,sp|AL136999.26|AL136999 Human DNA sequence from clone RP11-187E23 on chromosome 13q21.31-21.33 Contains STSs, GSSs and a CpG island. ----isReversed: 1 ----hitSequence: UUAGAGUUAAAGGUAUUUUAGAAUUUGUCUAUCAGAUUUUCUGGUUUUUACCAGAAAAUUUAA hit 216 : 9932 9870 (rev) 27.98 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AG GUUA+AG U UUUUA+AAUUUGUCUA CAG :U:UC :::U U ::: GA:A: 161428 UUAGAGUUAAAGGUAUUUUAGAAUUUGUCUAUCAGAUUUUCUGGUU-UUUACCAGAAAAU 161486 :::: 61 cccU 64 ++ 161487 UUAA 161490 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #9985,sp|AL137792.11|AL137792 Human DNA sequence from clone RP5-1053E7 on chromosome 1p21.1-21.3 ----isReversed: 0 ----hitSequence: CAAAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGUUUUUGCCAGAAAGCCCCU hit 217 : 31799 31861 (fwd) 47.00 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AA UGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:U: :::U U ::: :A:A:C 31799 CAAAUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUUCAGUU-UUUGCCAGAAAGC 31857 :::: 61 cccU 64 CCCU 31858 CCCU 31861 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #87,sp|AL138752.5|AL138752 Human DNA sequence from clone RP11-3J10 on chromosome 9p12-13.3 Contains part of a novel gene, the 3' end of the SHB (SHB adapt ----isReversed: 0 ----hitSequence: AAAAUGUUACAGCUCUUCUAGAAUUUGUCUAGCAGAUUUUCCAGUUUUUACUAGAAACCCCCC hit 218 : 8420 8482 (fwd) 41.28 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AA UGUUACAGCUCUU UA+AAUUUGUCUAGCAG UU:UC :::U U ::: GA:AC 8420 AAAAUGUUACAGCUCUUCUAGAAUUUGUCUAGCAGAUUUUCCAGUU-UUUACUAGAAACC 8478 :::: 61 cccU 64 CCC 8479 CCCC 8482 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #423,sp|AL139396.18|AL139396 Human DNA sequence from clone RP11-258C19 on chromosome Xp11.21-11.23 ----isReversed: 0 ----hitSequence: AGUGUUACAGCUGUUUUAGAAUUUGUCUAGCAGGCAUUCUGGUUUUUGCUGAAAGCCCCCU hit 219 : 17021 17081 (fwd) 42.51 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCU UUUUA+AAUUUGUCUAGCAGG+ :U U ::U U :: G A: +C 17021 --AGUGUUACAGCUGUUUUAGAAUUUGUCUAGCAGGCAUUCUGGUU-UUUGCUGAAAGCC 17077 :::: 61 cccU 64 CCCU 17078 CCCU 17081 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #573,sp|AL157783.15|AL157783 Human DNA sequence from clone RP11-134A8 on chromosome 10 ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUAGAAUUUGUCUAGCAGGCUCUCCGGUUUUUGCCAGAAUGCCCAC hit 220 : 24232 24292 (fwd) 41.13 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUU A+AAUUUGUCUAGCAGG:: UC :::U U ::: GA ::C 24232 UAAGUGUUACAGCUCUU--AGAAUUUGUCUAGCAGGCUCUCCGGUU-UUUGCCAGAAUGC 24288 :::: 61 cccU 64 CC+ 24289 CCAC 24292 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #723,sp|AL158191.17|AL158191 Human DNA sequence from clone RP11-309H15 on chromosome 13 ----isReversed: 1 ----hitSequence: UUACAGGUCUUUUAAAAUUUGUCUAGCAGGUUUUCCAAUAUUUACUGGAAACCCUCC hit 221 : 33390 33334 (rev) 28.78 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAG UCUUUUA AAUUUGUCUAGCAGGUU:UC : : U : : GA:ACC 47209 ------UUACAGGUCUUUUAAAAUUUGUCUAGCAGGUUUUCCAAUA-UUUACUGGAAACC 47261 :::: 61 cccU 64 C+C 47262 CUCC 47265 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #902,sp|AL160291.31|AL160291 Human DNA sequence from clone RP11-85G18 on chromosome 10 ----isReversed: 1 ----hitSequence: UGAGUGUUACAGCUCUUUUAGAAUUUUUCUAGCAGGCUUUCCGGUCUUUACCGGAAAGCCUAU hit 222 : 104619 104557 (rev) 47.33 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUU UCUAGCAGG:U:UC ::: U ::: GA:A:C 51344 UGAGUGUUACAGCUCUUUUAGAAUUUUUCUAGCAGGCUUUCCGGUC-UUUACCGGAAAGC 51402 :::: 61 cccU 64 C++U 51403 CUAU 51406 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #922,sp|AL160411.25|AL160411 Human DNA sequence from clone RP4-726N1 on chromosome 20. Contains ESTs, STSs, GSSs and a CpG island. Contains the 5' end of th ----isReversed: 1 ----hitSequence: UAAGGUUACAGCUCUUUUAGAAUUUGUCUAACAGGUUUUCCUGUCUUCACCGGAACUCCCCAA hit 223 : 62416 62354 (rev) 31.43 bits :::::::::::::::::::::::::::::::::::<<<<<<.<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucuc.ucuCUGUaGGagggagac 59 UAAG UUACAGCUCUUUUA+AAUUUGUCUA CAGGU: U U+: U U+ :+G A :C 38419 UAAGG-UUACAGCUCUUUUAGAAUUUGUCUAACAGGUUUUCcUGUCU-UCACCGGAACUC 38476 >:::: 60 ccccU 64 CCC+ 38477 CCCAA 38481 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1184,sp|AL162591.16|AL162591 Human DNA sequence from clone RP11-350G8 on chromosome 1 ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUUUUCACUGGAACCCCUCC hit 224 : 185144 185082 (rev) 48.35 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGGU :UC :::U U ::: GA: CC 16024 UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAGUU-UUCACUGGAACCC 16082 :::: 61 cccU 64 C+C 16083 CUCC 16086 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1190,sp|AL162615.13|AL162615 Human DNA sequence from clone RP5-1041C10 on chromosome 20 Contains the 5' part of the B4GALT5 gene for beta-1,4-galactosyltran ----isReversed: 0 ----hitSequence: UUACAGCUCUUUUAGAAUUUGUCGAGCAGGCUUUCCAGUUUUUGUUGGAAAGCCCCC hit 225 : 121597 121653 (fwd) 36.34 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAGCUCUUUUA+AAUUUGUC AGCAGG:U:UC : :U U : : GA:A:C 121597 ------UUACAGCUCUUUUAGAAUUUGUCGAGCAGGCUUUCCAGUU-UUUGUUGGAAAGC 121649 :::: 61 cccU 64 CCC 121650 CCCC 121653 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1673,sp|AL354989.13|AL354989 Human DNA sequence from clone RP11-537H15 on chromosome 9 ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUAUCGGAAAAUUCCC hit 226 : 30343 30283 (rev) 46.73 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG :U:UCU: : U : :GGA:A: 121648 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUC-UUUAUCGGAAAAU 121704 :::: 61 cccU 64 CC 121705 UCCC 121708 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1871,sp|AL355802.13|AL355802 Human DNA sequence from clone RP3-337H4 on chromosome 6 ----isReversed: 1 ----hitSequence: CAAGUGUUACAGUACUUUCAGAAUUGGUCUGGUAGGCUUUCCAGUUUUCUCUGGAAAGCUCCU hit 227 : 54993 54931 (rev) 35.17 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAG+ CUUU A+AAUU GUCU G AGG:U:UC :::U U ::: GA:A:C 50943 CAAGUGUUACAGUACUUUCAGAAUUGGUCUGGUAGGCUUUCCAGUU-UUCUCUGGAAAGC 51001 :::: 61 cccU 64 CCU 51002 UCCU 51005 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1992,sp|AL356241.8|AL356241 Human DNA sequence from clone RP11-58K5 on chromosome 13 ----isReversed: 0 ----hitSequence: UAAGUGUUACAGCUCUUUUAGAAUUGGUCUAGCAGGUUUUCUGGUUUGCACUAGAAAAACCAU hit 228 : 149682 149744 (fwd) 51.64 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUA+AAUU GUCUAGCAG::U:UC ::U U :: GA:A:: 149682 UAAGUGUUACAGCUCUUUUAGAAUUGGUCUAGCAGGUUUUCUGGUU-UGCACUAGAAAAA 149740 :::: 61 cccU 64 CC+U 149741 CCAU 149744 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2054,sp|AL356354.10|AL356354 Human DNA sequence from clone RP4-651A20 on chromosome 20 Contains ESTs, STSs and GSSs. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGUCUUUCCAGUUUUUGCCGGAAAGCCCCU hit 229 : 11485 11545 (fwd) 48.01 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG :U:UC :::U U ::: GA:A: 11485 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGUCUUUCCAGUU-UUUGCCGGAAAGC 11541 :::: 61 cccU 64 CCCU 11542 CCCU 11545 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2107,sp|AL356481.16|AL356481 Human DNA sequence from clone RP11-216B9 on chromosome 9 ----isReversed: 0 ----hitSequence: UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAAUCUUCACUGAAAAGCUUU hit 230 : 24551 24612 (fwd) 38.53 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG :U:UC : U U : GA:A: 24551 UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCAA-UCUUC-ACUGAAAAG 24608 :::: 61 cccU 64 C+ U 24609 CUUU 24612 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2206,sp|AL356953.17|AL356953 Human DNA sequence from clone RP11-572A16 on chromosome 1 ----isReversed: 0 ----hitSequence: UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCUCUUUUAGAAUUUAAAUAAAAAAUAAUAA hit 231 : 43362 43423 (fwd) 35.84 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGC U:U:: ::U UA :: ::A:A 43362 UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGC--UCUUUUAGAAUUUAAAUAAAAAAUA 43419 :::: 61 cccU 64 ++ 43420 AUAA 43423 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2236,sp|AL357042.11|AL357042 Human DNA sequence from clone RP11-85O2 on chromosome 10 ----isReversed: 0 ----hitSequence: UCUGUGUUACAGUUCGUUUUGAAUUUGUCUAGCAGGUUUUCUGGUUUUUACCAGAACUUAAU hit 232 : 46964 47025 (fwd) 30.59 bits ::::::::::::::::::::::::::::::::::.:<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA.GguucucucuCUGUaGGagggagac 59 U +GUGUUACAG+UC UUU +AAUUUGUCUAGCA G:UU:::::U U A:::::AC 46964 UCUGUGUUACAGUUCGUUUUGAAUUUGUCUAGCAgGUUUUCUGGU--UUUU-ACCAGAAC 47020 >:::: 60 ccccU 64 : +U 47021 UUAAU 47025 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2310,sp|AL357503.12|AL357503 Human DNA sequence from clone RP5-899C14 on chromosome 20 Contains the 3' end of a novel gene, ESTs, STSs and GSSs. ----isReversed: 1 ----hitSequence: GGUGUUACAGCUCUUUUAGAAUAUGUCUAGCAGGUUUUUCAGUUUUCACCAGAAUGCCCAC hit 233 : 126684 126624 (rev) 36.19 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 GUGUUACAGCUCUUUUA+AAU UGUCUAGCAGG:::U: :::U U ::: :A:::C 6605 --GGUGUUACAGCUCUUUUAGAAUAUGUCUAGCAGGUUUUUCAGUU-UUCACCAGAAUGC 6661 :::: 61 cccU 64 CC+ 6662 CCAC 6665 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2338,sp|AL357619.15|AL357619 Human DNA sequence from clone RP11-703H16 on chromosome 6 ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCCGGUUUUUGCAGGAAAGCCCCC hit 234 : 22273 22333 (fwd) 47.61 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UC ::U U :: GA:A:C 22273 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCCGGUU-UUUGCAGGAAAGC 22329 :::: 61 cccU 64 CCC 22330 CCCC 22333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2343,sp|AL357672.14|AL357672 Human DNA sequence from clone RP11-437N14 on chromosome 1 ----isReversed: 0 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGCUUUCUGGUUUUUGCUGGAAAGCCCCC hit 235 : 55654 55716 (fwd) 50.34 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUC AGCAGG:U:UCU ::U U :: GGA:A:C 55654 GAAGUGUUACAGCUCUUUUAGAAUUUGUCCAGCAGGCUUUCUGGUU-UUUGCUGGAAAGC 55712 :::: 61 cccU 64 CCC 55713 CCCC 55716 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2533,sp|AL359265.8|AL359265 Human DNA sequence from clone RP11-195C7 on chromosome 1 ----isReversed: 0 ----hitSequence: AGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAAGUUUAGAAAAUGAUUCAAAGAGACUGAC hit 236 : 68507 68567 (fwd) 29.17 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGC CUUUUA+AAUUUGUCUAGCA G: ::::: U A ::::: :C 68507 --AGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAAGUUUAGAAAAU-GAUUCAAAGAGAC 68563 :::: 61 cccU 64 + 68564 UGAC 68567 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3059,sp|AL390774.10|AL390774 Human DNA sequence from clone RP11-417B4 on chromosome 9 ----isReversed: 0 ----hitSequence: UUAAUGUUACAGCUCUUUCAGAAUUUGUCUAGGUUUUCUGGUUUAGCAGAAAAAAAAAA hit 237 : 192408 192466 (fwd) 29.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGUUACAGCUCUUU A+AAUUUGUCUAG ::U:U U : U UAG : G A:A:: 192408 UUAAUGUUACAGCUCUUUCAGAAUUUGUCUAG---GUUUUCUGG-UUUAG-CAGAAAAAA 192462 :::: 61 cccU 64 + 192463 AAAA 192466 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3401,sp|AL445071.15|AL445071 Human DNA sequence from clone RP11-460H18 on chromosome 10 ----isReversed: 0 ----hitSequence: UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCCGGCUUUCCAGUUUUGCCGGAAAGCCCCC hit 238 : 57365 57426 (fwd) 44.23 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGC GG:U:UC C U U G G GA:A:C 57365 UGAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCCGGCUUUC-CAGUUUUGCCG-GAAAGC 57422 :::: 61 cccU 64 CCC 57423 CCCC 57426 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3511,sp|AL445467.6|AL445467 Human DNA sequence from clone RP11-311M14 on chromosome X ----isReversed: 0 ----hitSequence: UUAGUGUCACAGCUGUUUUAGAAUUUAUCUAGCAGGUUUUCUGGUCUUUACUGGAAAGCCCAA hit 239 : 165840 165902 (fwd) 39.06 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGU ACAGCU UUUUA+AAUUU UCUAGCAGG:U:UCU :: U :: GGA:A:C 165840 UUAGUGUCACAGCUGUUUUAGAAUUUAUCUAGCAGGUUUUCUGGUC-UUUACUGGAAAGC 165898 :::: 61 cccU 64 CC+ 165899 CCAA 165902 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3679,sp|AL450326.30|AL450326 Human DNA sequence from clone RP11-517P14 on chromosome 10 ----isReversed: 0 ----hitSequence: AAAGAGUUACAGCUCUUUUAGAAUUUGUCUGGCAGGCUUUCCAGUUUUUGCCAGUGUGAACCCAA hit 240 : 55629 55693 (fwd) 33.70 bits ::::::::::::::::::::::::::::::::::.:<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA.GguucucucuCUGUaGGagggagac 59 AAG GUUACAGCUCUUUUA+AAUUUGUCU GCA G::U :C:+U:U U :A+:G: A: 55629 AAAGAGUUACAGCUCUUUUAGAAUUUGUCUGGCAgGCUUUCCAGUUUUUGCCAGUGUGAA 55688 >:::: 60 ccccU 64 :CC+ 55689 CCCAA 55693 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3687,sp|AL450336.7|AL450336 Human DNA sequence from clone RP11-24C14 on chromosome 6 ----isReversed: 1 ----hitSequence: UCAGUUUUACAACUCUUUUAGAAUGUGUCUAGUAGAUUUUCUGGUCUUUACCAGAAAGACUCCCU hit 241 : 99637 99573 (rev) 32.69 bits ::::::::::::::::::::::::::::::::::..:<<<<<<<<<<_____>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA..GguucucucuCUGUaGGagggaga 58 U AGU UUACA CUCUUUUA+AAU UGUCUAG A :UUCU:+: :U UA : :+:AGA 25871 UCAGUUUUACAACUCUUUUAGAAUGUGUCUAGUAgaUUUUCUGGUCUU-UACCAGAAAGA 25929 >>:::: 59 cccccU 64 C:CCCU 25930 CUCCCU 25935 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3840,sp|AL499611.4|AL499611 Human DNA sequence from clone RP11-5F7 on chromosome 1 ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCUCUUUUCACUGGAAGACUCC hit 242 : 67 9 (rev) 42.91 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG::U::C +U U A+ G::A:: 11069 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCUCU--UUUC-ACUGGAAGA 11123 :::: 61 cccU 64 C+C 11124 CUCC 11127 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3914,sp|AL512410.14|AL512410 Human DNA sequence from clone RP11-100E6 on chromosome 6 ----isReversed: 1 ----hitSequence: UGAAUGUUAUGGCUCUUUUAUAAUUUGUCUAGCAGGUUUUCCACUUUUCACCAGAAACUGCCU hit 243 : 56042 55980 (rev) 28.70 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGUUA GCUCUUUUA AAUUUGUCUAGCAG UU:UC : :U U : : GA:AC 104850 UGAAUGUUAUGGCUCUUUUAUAAUUUGUCUAGCAGGUUUUCCACUU-UUCACCAGAAACU 104908 :::: 61 cccU 64 CCU 104909 GCCU 104912 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4034,sp|AL513044.13|AL513044 Human DNA sequence from clone RP11-187D4 on chromosome 1 ----isReversed: 1 ----hitSequence: UUAGUGUUAUAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUCCAAAAACCCCCA hit 244 : 55496 55433 (rev) 45.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA AGCUCUUUUA+AAUUUGUCUAGCAGGUU:U :::U U+ ::: A:ACC 56406 UUAGUGUUAUAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCAUCCAAAAACC 56465 :::: 61 cccU 64 CCC 56466 CCCA 56469 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4156,sp|AL513542.11|AL513542 Human DNA sequence from clone RP11-129J12 on chromosome 10 ----isReversed: 0 ----hitSequence: AGGGUUACAGCUCUUUUAGAAUUUGUCUAGCAGAUUUUCCAGUAAAAAAAAAAAAAU hit 245 : 18907 18963 (fwd) 32.07 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AG GUUACAGCUCUUUUA+AAUUUGUCUAGCAG :U:U : GUA : A:A: 18907 --AGGGUUACAGCUCUUUUAGAAUUUGUCUAGCAGAUUUUCCA---GUAA--AAAAAAAA 18959 :::: 61 cccU 64 +U 18960 AAAU 18963 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4388,sp|AL590103.12|AL590103 Human DNA sequence from clone RP11-132G19 on chromosome 1 ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCUACUAGAAAACCAGAAAAGAU hit 246 : 18274 18336 (fwd) 43.63 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG::U U : : UAG : : A A: 18274 CAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCCUAC--UAGaAAACCAGAA 18331 >:::: 60 ccccU 64 : +U 18332 AAGAU 18336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4862,sp|AL591720.12|AL591720 Human DNA sequence from clone RP11-28K12 on chromosome 1 ----isReversed: 1 ----hitSequence: AGUGGUGCAGCCCUUUUAGAAUUUUUCUGGCAGGUUUUUUGGUUUUCACCAGAAAACAUCCC hit 247 : 118785 118724 (rev) 26.27 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUG U CAGC CUUUUA+AAUUU UCU GCAG:UU:U:U ::U U+ :: G:A:AC: 37707 --AGUGGUGCAGCCCUUUUAGAAUUUUUCUGGCAGGUUUUUUGGUUUUCACCAGAAAACA 37764 :::: 61 cccU 64 CC 37765 UCCC 37768 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #5037,sp|AL593851.6|AL593851 Human DNA sequence from clone RP11-415H23 on chromosome 9 ----isReversed: 0 ----hitSequence: UUAGUGUUACAGUUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCCAAAAGCCUCU hit 248 : 10467 10529 (fwd) 50.84 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG+UCUUUUA+AAUUUGUCUAGCAGG:U:U :::U U ::: A:A:C 10467 UUAGUGUUACAGUUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUU-UUUGCCCAAAAGC 10525 :::: 61 cccU 64 C+CU 10526 CUCU 10529 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #5068,sp|AL596137.7|AL596137 Human DNA sequence from clone RP11-50E11 on chromosome 10 ----isReversed: 1 ----hitSequence: ACUGUAAGGCUCUUUUAGAAUUUAUCUAGCAAGUUUUCUUGUUUUUACCAGAAAACUCCU hit 249 : 190 131 (rev) 28.18 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A+U UA+ GCUCUUUUA+AAUUU UCUAGCA G:U:UC :::U U ::: GA:A:C 51290 --ACU-GUAAGGCUCUUUUAGAAUUUAUCUAGCAAGUUUUCUUGUU-UUUACCAGAAAAC 51345 :::: 61 cccU 64 CCU 51346 UCCU 51349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #5385,sp|AL627313.16|AL627313 Human DNA sequence from clone RP11-492M19 on chromosome 1 ----isReversed: 0 ----hitSequence: UCAGUGUUACACCUCUUUUAGAAUUUAUCUAUCAGGUUUUCCAGUGUUCACUGAAAUUUGU hit 250 : 38227 38287 (fwd) 27.35 bits ::::::::::::::::::::::::::::::::::.:<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA.GguucucucuCUGUaGGagggagac 59 U AGUGUUACA CUCUUUUA+AAUUU UCUA CA G::U: C::U GU A::G :A: 38227 UCAGUGUUACACCUCUUUUAGAAUUUAUCUAUCAgGUUUUCCAGU--GUUC-ACUG-AAA 38282 >:::: 60 ccccU 64 : + U 38283 UUUGU 38287 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6054,sp|AL929470.20|AL929470 Human DNA sequence from clone RP11-72M14 on chromosome 1 ----isReversed: 1 ----hitSequence: AGUUGUUACAGCUCUUUUAGAAUUUGUGUAGCAGGUUUUCUGGUUUUCACCAGAAACCAACC hit 251 : 20261 20200 (rev) 42.34 bits :::::.::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGU.GUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AGU GUUACAGCUCUUUUA+AAUUUGU UAGCAGGUU:UC :::U U ::: GA:AC 14659 --AGUuGUUACAGCUCUUUUAGAAUUUGUGUAGCAGGUUUUCUGGUU-UUCACCAGAAAC 14715 >:::: 60 ccccU 64 C C 14716 CAACC 14720 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6457,sp|AP000442.6|AP000442 Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-60A24. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUCAGAAUUUGUUUAGCAGGUUUUCUGGUUUUCACAGGAAAAUAAAA hit 252 : 416 476 (fwd) 40.58 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUU A+AAUUUGU UAGCAG :U:UCU ::U U :: GGA:A: 416 --AGUGUUACAGCUCUUUCAGAAUUUGUUUAGCAGGUUUUCUGGUU-UUCACAGGAAAAU 472 :::: 61 cccU 64 + 473 AAAA 476 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6491,sp|AP000494.1|AP000494 Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308, anti-oncogene region, section 2/5. ----isReversed: 1 ----hitSequence: UGAGUGUUAUGGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUACCAGAAAAGUCUC hit 253 : 47760 47698 (rev) 34.93 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA GCUCUUUUA+AAUUUGUCUAGCAG :U:UC ::: U ::: GA:A: 152241 UGAGUGUUAUGGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUC-UUUACCAGAAAAG 152299 :::: 61 cccU 64 C 152300 UCUC 152303 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6668,sp|AP000802.5|AP000802 Homo sapiens genomic DNA, chromosome 11 clone:RP11-629G13, complete sequence. ----isReversed: 0 ----hitSequence: AGUAUUAUAGCUCUUUUAUAAUUUGUCUAGCAGAUUUUCUGGUUUUCACCACGAAAGAAAU hit 254 : 112104 112164 (fwd) 26.93 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU UUA AGCUCUUUUA AAUUUGUCUAGCAG :U: :::U U ::: :A: 112104 --AGUAUUAUAGCUCUUUUAUAAUUUGUCUAGCAGAUUUUCUGGUU-UUCACCACGAAAG 112160 :::: 61 cccU 64 +U 112161 AAAU 112164 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6698,sp|AP000856.3|AP000856 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1539E1. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUCUUCACUGGAAGACCACU hit 255 : 98715 98653 (rev) 41.05 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCU UUA+AAUUU UCUAGCAGG: :UCU :: U :: GGA: :C 53416 UCAGUGUUACAGCUCUCUUAGAAUUUAUCUAGCAGGUUUUCUGGUC-UUCACUGGAAGAC 53474 :::: 61 cccU 64 C CU 53475 CACU 53478 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6776,sp|AP000999.6|AP000999 Homo sapiens genomic DNA, chromosome 11 clone:RP11-667I23, complete sequence. ----isReversed: 0 ----hitSequence: AGUAUUAUAGCUCUUUUAUAAUUUGUCUAGCAGAUUUUCUGGUUUUCACCACGAAAGAAAU hit 256 : 5238 5298 (fwd) 26.93 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGU UUA AGCUCUUUUA AAUUUGUCUAGCAG :U: :::U U ::: :A: 5238 --AGUAUUAUAGCUCUUUUAUAAUUUGUCUAGCAGAUUUUCUGGUU-UUCACCACGAAAG 5294 :::: 61 cccU 64 +U 5295 AAAU 5298 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6785,sp|AP001011.6|AP001011 Homo sapiens genomic DNA, chromosome 18 clone:RP11-703M24, complete sequence. ----isReversed: 1 ----hitSequence: AAAGUGUUACAGCUCUUUCAGAAUUUGUCUAUCAAAUUCUAAAAUUUCUGAUUUAAAAAACAAU hit 257 : 50345 50282 (rev) 31.83 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUU A+AAUUUGUCUA CA :U U ::::U G:::: A A: 154433 AAAGUGUUACAGCUCUUUCAGAAUUUGUCUAUCAAAUUCUAAAAUUUCUGAUUUAAAAAA 154492 :::: 61 cccU 64 C +U 154493 CAAU 154496 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6793,sp|AP001029.5|AP001029 Homo sapiens genomic DNA, chromosome 18 clone:RP11-861E21, complete sequence. ----isReversed: 0 ----hitSequence: GAAGUGGUACAGUUCUUUUGGAAUUUGUCUAGCAGGUCUUCUUGUUUUUACUGGAAAAUCCU hit 258 : 43549 43610 (fwd) 35.26 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUG UACAG+UCUUUU +AAUUUGUCUAGCAG:: :UCU:::U U :::GGA: :: 43549 GAAGUGGUACAGUUCUUUUGGAAUUUGUCUAGCAGGUCUUCUUGUU-UUUACUGGAA-AA 43606 :::: 61 cccU 64 CCU 43607 UCCU 43610 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6884,sp|AP001208.3|AP001208 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1930G5. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCCAGUAUUCACCGGAAAGCUCCA hit 259 : 131963 131903 (rev) 40.88 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCA G:U:UC + U U + GA:A:C 22625 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCA-GGUUUCCCAGUAUUCACCGGAAAGC 22681 :::: 61 cccU 64 CC 22682 UCCA 22685 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6949,sp|AP001330.3|AP001330 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1410C5. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUCCCAGUAUUCACCGGAAAGCUCCA hit 260 : 53698 53638 (rev) 40.88 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCA G:U:UC + U U + GA:A:C 109558 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCA-GGUUUCCCAGUAUUCACCGGAAAGC 109614 :::: 61 cccU 64 CC 109615 UCCA 109618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6965,sp|AP001362.5|AP001362 Homo sapiens genomic DNA, chromosome 11, clone:RP11-856B14. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGGUCUUUUAGAAUUUGUCUAGCAGGUUUCCCAGUUUUUUUUUGUUUUUUGUU hit 261 : 31509 31447 (rev) 27.90 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG UCUUUUA+AAUUUGUCUAGCAG : :C : :U U : : G: : 179874 UUAGUGUUACAGGUCUUUUAGAAUUUGUCUAGCAGGUUUCCCAGUU-UUUUUUUGUUUUU 179932 :::: 61 cccU 64 U 179933 UGUU 179936 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7382,sp|AP002789.3|AP002789 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-716L7. ----isReversed: 1 ----hitSequence: UCAGUGUUACAGCUUUUUUAGAAUUUGUCCAGCAGGCUUUCUUGUUUUCACUGGAAGCCUCCC hit 262 : 50667 50605 (rev) 40.46 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCU UUUUA+AAUUUGUC AGCAGG+ :UCU:::U U :::GGA: +C 39334 UCAGUGUUACAGCUUUUUUAGAAUUUGUCCAGCAGGCUUUCUUGUU-UUCACUGGAAGCC 39392 :::: 61 cccU 64 CC 39393 UCCC 39396 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7536,sp|AP003170.4|AP003170 Homo sapiens genomic DNA, chromosome 11 clone:RP11-667M19, complete sequence. ----isReversed: 1 ----hitSequence: UUGCAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCACUAGAGUUCCCCGC hit 263 : 121595 121538 (rev) 28.02 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UU CAGCUCUUUUA+AAUUUGUCUAGCAGGU: U :U U+ : G :CC 56862 ------UUGCAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCACUAGAGUUCC 56915 :::: 61 cccU 64 CC 56916 CCGC 56919 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7542,sp|AP003176.2|AP003176 Homo sapiens genomic DNA, chromosome 11q clone:RP11-15L8, complete sequences. ----isReversed: 0 ----hitSequence: UUAGUGUUACAGCACUUUUAGAAUUUGUCUAGCAGGCUUUCAGGUCUUUGCCAGAAAGCCCCA hit 264 : 63861 63923 (fwd) 49.06 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGC CUUUUA+AAUUUGUCUAGCAGG:U:UC:::: U ::::GA:A:C 63861 UUAGUGUUACAGCACUUUUAGAAUUUGUCUAGCAGGCUUUCAGGUC-UUUGCCAGAAAGC 63919 :::: 61 cccU 64 CCC 63920 CCCA 63923 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7669,sp|AP003778.3|AP003778 Homo sapiens genomic DNA, chromosome 11q clone:RP11-384C21, complete sequences. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUCAGAAUUUGUUUAGCAGGUUUUCUGGUUUUCACAGGAAAAUAAAA hit 265 : 180925 180985 (fwd) 40.58 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUU A+AAUUUGU UAGCAG :U:UCU ::U U :: GGA:A: 180925 --AGUGUUACAGCUCUUUCAGAAUUUGUUUAGCAGGUUUUCUGGUU-UUCACAGGAAAAU 180981 :::: 61 cccU 64 + 180982 AAAA 180985 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7844,sp|AP005431.3|AP005431 Homo sapiens genomic DNA, chromosome 18 clone:RP11-193E15, complete sequence. ----isReversed: 0 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUUUUUGCUGGAAAGACUCC hit 266 : 150855 150917 (fwd) 50.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAG::U:UC ::U U :: GA:A:: 150855 GAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCGGUU-UUUGCUGGAAAGA 150913 :::: 61 cccU 64 C+C 150914 CUCC 150917 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7938,sp|AP006240.1|AP006240 Homo sapiens genomic DNA, chromosome 3, clone:RP11-359D8, complete sequence. ----isReversed: 1 ----hitSequence: UGAGUGUUAUGGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUCUUUACCAGAAAAGUCUC hit 267 : 50493 50431 (rev) 34.93 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA GCUCUUUUA+AAUUUGUCUAGCAG :U:UC ::: U ::: GA:A: 142922 UGAGUGUUAUGGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUC-UUUACCAGAAAAG 142980 :::: 61 cccU 64 C 142981 UCUC 142984 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----sequence: #4693,sp|AY273797.1|AY273797 Homo sapiens polymerase (DNA directed) kappa (POLK) gene, complete cds. ----isReversed: 1 ----hitSequence: UGAAUGUUACAGUUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUCUUCACCAGAAAGCUCCC hit 268 : 28889 28828 (rev) 29.11 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U A UGUUACAG U UUU A+AAUUUGUCUA CAGG:U:UC ::: U ::: GA:A:C 62017 UGAAUGUUACAG-UUUUUCAGAAUUUGUCUAACAGGUUUUCCGGUC-UUCACCAGAAAGC 62074 :::: 61 cccU 64 CC 62075 UCCC 62078 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----sequence: #9211,sp|BC044916.1|BC044916 Homo sapiens, clone IMAGE:5294945, mRNA. ----isReversed: 0 ----hitSequence: CAAGUGUUAACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUUAUUGGAAAACCUUC hit 269 : 1183 1246 (fwd) 43.89 bits :::::::::.::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUA.CAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AAGUGUUA CAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU :U U : GGA:A: 1183 CAAGUGUUAaCAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUU-UUUAUUGGAAAA 1241 >:::: 60 ccccU 64 CC+ 1242 CCUUC 1246 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #2926,sp|BX004861.10|BX004861 Human DNA sequence from clone CTD-2542O7 on chromosome X ----isReversed: 0 ----hitSequence: UUAGUGUCACAGCUGUUUUAGAAUUUAUCUAGCAGGUUUUCUGGUCUUUACUGGAAAGCCCAA hit 270 : 1503 1565 (fwd) 39.06 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGU ACAGCU UUUUA+AAUUU UCUAGCAGG:U:UCU :: U :: GGA:A:C 1503 UUAGUGUCACAGCUGUUUUAGAAUUUAUCUAGCAGGUUUUCUGGUC-UUUACUGGAAAGC 1561 :::: 61 cccU 64 CC+ 1562 CCAA 1565 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3275,sp|AL121603.4|CNS01DS0 Human chromosome 14 DNA sequence BAC R-73E17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 1 ----hitSequence: GAAGCGUUACAGCUCUUUUAGAAUUGUCUAGCAGGCUUUCCAGUUUUUGCUGGAAAGCCCCU hit 271 : 40821 40760 (rev) 45.74 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAG GUUACAGCUCUUUUA+AA UUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 100714 GAAGCGUUACAGCUCUUUUAGAA-UUGUCUAGCAGGCUUUCCAGUU-UUUGCUGGAAAGC 100771 :::: 61 cccU 64 CCCU 100772 CCCU 100775 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3292,sp|AL121784.5|CNS01DSH Human chromosome 14 DNA sequence BAC R-305I3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 1 ----hitSequence: AGUGUUACAACUCUUUUACAAUUUGUCUAGAAGGUUUUCUGGUCUUUACUGAAAAGCCCCA hit 272 : 135732 135672 (rev) 39.86 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACA CUCUUUUACAAUUUGUCUAG AGG:U:U U :: U :: G A:A:C 44792 --AGUGUUACAACUCUUUUACAAUUUGUCUAGAAGGUUUUCUGGUC-UUUACUGAAAAGC 44848 :::: 61 cccU 64 CCC 44849 CCCA 44852 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3430,sp|AL137226.3|CNS01DWI Human chromosome 14 DNA sequence BAC R-356A6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 0 ----hitSequence: UUACAGCUCUUCUAGAAUUUGUCCAGCAGUUCUCCUGGAUUUUACAGGAAAACCCCA hit 273 : 162633 162689 (fwd) 28.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAGCUCUU UA+AAUUUGUC AGCAG : ::CU ::U U :: GG:: : 162633 ------UUACAGCUCUUCUAGAAUUUGUCCAGCAGUUCUCCUGGAU-UUUACAGGAAAAC 162685 :::: 61 cccU 64 CCC 162686 CCCA 162689 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3459,sp|AL139300.6|CNS01DXG Human chromosome 14 DNA sequence BAC R-894P9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 1 ----hitSequence: AGUGUCACAGCUCUUCUAGAAUUUGACUAGCAGGUUUUCCGAUUUUUACUGGAAAGCCCUU hit 274 : 130988 130928 (rev) 35.59 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGU ACAGCUCUU UA+AAUUUG CUAGCAGG:U:UC :U U : GA:A:C 60576 --AGUGUCACAGCUCUUCUAGAAUUUGACUAGCAGGUUUUCCGAUU-UUUACUGGAAAGC 60632 :::: 61 cccU 64 CC U 60633 CCUU 60636 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3538,sp|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-764E10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 0 ----hitSequence: UGAGUGUUAUAGCUCUUUUAUAAUUUGUCUAGUGGGCUUUCUGUUUUUUACGAGAAAGUCCUC hit 275 : 60645 60707 (fwd) 32.03 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA AGCUCUUUUA AAUUUGUCUAG G :U:UC +::U U ::+ GA:A: 60645 UGAGUGUUAUAGCUCUUUUAUAAUUUGUCUAGUGGGCUUUCUGUUU-UUUACGAGAAAGU 60703 :::: 61 cccU 64 CC 60704 CCUC 60707 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3599,sp|AL355885.4|CNS05TCW Human chromosome 14 DNA sequence BAC R-434O22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 1 ----hitSequence: GAAGCGUUACAGCUCUUUUAGAAUUGUCUAGCAGGCUUUCCAGUUUUUGCUGGAAAGCCCCU hit 276 : 156861 156800 (rev) 45.74 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAG GUUACAGCUCUUUUA+AA UUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 17582 GAAGCGUUACAGCUCUUUUAGAA-UUGUCUAGCAGGCUUUCCAGUU-UUUGCUGGAAAGC 17639 :::: 61 cccU 64 CCCU 17640 CCCU 17643 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #8289,sp|AL035687.13|HS142O9 Human DNA sequence from clone RP1-142O9 on chromosome 6p11.1-12.3 ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAAGUUCUCUGGUCUUCACUGGAAAACCCAU hit 277 : 37204 37264 (fwd) 46.19 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCA G:U UCU :: U :: GGA A:C 37204 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAAGUUCUCUGGUC-UUCACUGGAAAAC 37260 :::: 61 cccU 64 CC+U 37261 CCAU 37264 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #8310,sp|AL035404.20|HS144F13 Human DNA sequence from clone RP1-144F13 on chromosome 1p33-34.3 ----isReversed: 1 ----hitSequence: UCUGUGUUAUAGCUUUUUAAGAAUUUGUCUAGCAGGUUUUCCAUUUUUUACUAGAAAAUCCCC hit 278 : 138153 138091 (rev) 35.35 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U +GUGUUA AGCU UUU A+AAUUUGUCUAGCAG :U:UC :::U U ::: GA:A: 16260 UCUGUGUUAUAGCUUUUUAAGAAUUUGUCUAGCAGGUUUUCCAUUU-UUUACUAGAAAAU 16318 :::: 61 cccU 64 CCC 16319 CCCC 16322 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----sequence: #1463,sp|U18671.1|HS186711 Human Stat2 gene, complete cds. ----isReversed: 0 ----hitSequence: CAAGUGUUACAGCUCUUUUAGGAUUUGUCUAGCAGGCUUUCAGGUUUUUGCCAGAAACCACCC hit 279 : 8463 8525 (fwd) 48.82 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+ AUUUGUCUAGCAGG+U:UC::::U U ::::GA:A+C 8463 CAAGUGUUACAGCUCUUUUAGGAUUUGUCUAGCAGGCUUUCAGGUU-UUUGCCAGAAACC 8521 :::: 61 cccU 64 CC 8522 ACCC 8525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----sequence: #2113,sp|Z98744.2|HS193B12 Human DNA sequence from clone RP1-193B12 on chromosome 6p21.3-22.3 Contains the H2AFD, H2BFD, H2AFI, H1F5, H3FF, H4FK, H3FJ, H2 ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCCUUCUGGUUUUUGCUGGGAAGUCCCCA hit 280 : 61306 61245 (rev) 48.51 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG :UCU+ :U U G: +GGA: C 39069 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCCUUCUGGUUUUUGCUGGGAAGUC 39126 :::: 61 cccU 64 CCC 39127 CCCA 39130 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #292,sp|Z93020.1|HS503G16 Human DNA sequence from clone RP3-503G16 on chromosome 6p23 ----isReversed: 1 ----hitSequence: CAAGUGUUACAGAUCCUUUAGAAUUUCUCUGGCAGGUUUUCCAGUUUUUACCAAAAAACUCUU hit 281 : 78329 78267 (rev) 34.48 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAG UC UUUA+AAUUU UCU GCAGG:U:U :::U U ::: A:A:C 47358 CAAGUGUUACAGAUCCUUUAGAAUUUCUCUGGCAGGUUUUCCAGUU-UUUACCAAAAAAC 47416 :::: 61 cccU 64 C U 47417 UCUU 47420 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #477,sp|AL008635.1|HS510H16 Human DNA sequence from clone RP3-510H16 on chromosome 22q12.1-12.3 ----isReversed: 0 ----hitSequence: AAAAUGUUACUGCUAUUUUAGAAUUUGUCUAGCAGGUUUUCCGGUCUUCACCAGAAAACCCCU hit 282 : 9565 9627 (fwd) 39.79 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AA UGUUAC GCU UUUUA+AAUUUGUCUAGCAGG:U:UC ::: U ::: GA:A:C 9565 AAAAUGUUACUGCUAUUUUAGAAUUUGUCUAGCAGGUUUUCCGGUC-UUCACCAGAAAAC 9623 :::: 61 cccU 64 CCCU 9624 CCCU 9627 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #3405,sp|Z95330.11|HS73E16 Human DNA sequence from clone RP1-73E16 on chromosome 20q12-13.3 Contains ESTs, STSs and GSSs. ----isReversed: 0 ----hitSequence: AAGGUGUUACAGCUCUUUUAGAAUUUGUCUAGCACGUUUUCCGGUUGUCACUCCCAGG hit 283 : 9112 9169 (fwd) 29.45 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A GUGUUACAGCUCUUUUA+AAUUUGUCUAGCA GU: U GU G A :CC 9112 AAGGUGUUACAGCUCUUUUAGAAUUUGUCUAGCACGUUUUCCG---GUUG---UCACUCC 9165 :::: 61 cccU 64 C 9166 CAGG 9169 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #5601,sp|AL023575.1|HS931E15 Human DNA sequence from clone RP5-931E15 on chromosome Xq25 ----isReversed: 1 ----hitSequence: GGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUAAAUACAGGAAAGCCCUC hit 284 : 61338 61278 (rev) 41.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 GUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UC ::: A ::: GA:A:C 20537 --GGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCCAGUA-AAUACAGGAAAGC 20593 :::: 61 cccU 64 CC 20594 CCUC 20597 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #7333,sp|AL121983.13|HSA160H22 Human DNA sequence from clone RP11-160H22 on chromosome 1q23.2-24.3 ----isReversed: 1 ----hitSequence: UUAAAGCUCUUUUAAAAUUUGUCUAGCAGGUUUUCUGGUCUUUACCAGAAAGUCCCC hit 285 : 108592 108536 (rev) 32.50 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUA+AGCUCUUUUA AAUUUGUCUAGCAG :U:UC ::: U ::: GA:A: 56845 ------UUAAAGCUCUUUUAAAAUUUGUCUAGCAGGUUUUCUGGUC-UUUACCAGAAAGU 56897 :::: 61 cccU 64 CCC 56898 CCCC 56901 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #3725,sp|AC002036.1|HSAC2036 Homo sapiens Chromosome 11q23 PAC clone pDJ356d6, complete sequence. ----isReversed: 0 ----hitSequence: UUGCAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCACUAGAGUUCCCCGC hit 286 : 4087 4144 (fwd) 28.02 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UU CAGCUCUUUUA+AAUUUGUCUAGCAGGU: U :U U+ : G :CC 4087 ------UUGCAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCACUAGAGUUCC 4140 :::: 61 cccU 64 CC 4141 CCGC 4144 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #3760,sp|AC002080.1|HSAC2080 Human BAC clone CTA-253B13 from 7q31-q32, complete sequence. ----isReversed: 1 ----hitSequence: UGAGUGUUAUAUUUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGAAGACCUCCCACGCAAU hit 287 : 144237 144177 (rev) 29.44 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUA A +UCUUUUA+AAUUUGUCUAGCAG UU : +: AG :+ : AC 27669 UGAGUGUUAUAUUUCUUUUAGAAUUUGUCUAGCAGGUU--UUCUGG-AAGACCUCCCACG 27725 :::: 61 cccU 64 C +U 27726 CAAU 27729 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #3849,sp|AC002310.1|HSAC2310 Human Chromosome 16 BAC clone CIT987SK-A-635H12, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGUUUUUUGCUAAAAUCCUCCA hit 288 : 104613 104673 (fwd) 43.00 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGG+::U ::U U :: A::+C 104613 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGUUU-UUUGCUAAAAUCC 104669 :::: 61 cccU 64 CC 104670 UCCA 104673 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #3887,sp|AC000029.17|HSAC29 Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 In GNAZ-BCR Region, complete sequence. ----isReversed: 1 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUUUCUAGCAGGUUUUCCAGUUUUCACUGGAACCUCUCC hit 289 : 117537 117477 (rev) 35.89 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUU UCUAGCAG U :UC :::U U ::: GA: C 25443 --AGUGUUACAGCUCUUUUAGAAUUUUUCUAGCAGGUUUUCCAGUU-UUCACUGGAACCU 25499 :::: 61 cccU 64 C+C 25500 CUCC 25503 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #3932,sp|AC000393.1|HSAC393 Genomic sequence from Human 9q34, complete sequence. ----isReversed: 1 ----hitSequence: UUAGUGUUACAGUUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUUUUUGCCCAAAAGCCUCU hit 290 : 33424 33362 (rev) 50.84 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAG+UCUUUUA+AAUUUGUCUAGCAGG:U:U :::U U ::: A:A:C 10308 UUAGUGUUACAGUUCUUUUAGAAUUUGUCUAGCAGGCUUUCUGGUU-UUUGCCCAAAAGC 10366 :::: 61 cccU 64 C+CU 10367 CUCU 10370 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #7439,sp|AL117341.26|HSBA512N4 Human DNA sequence from clone RP11-512N4 on chromosome 10 ----isReversed: 1 ----hitSequence: ACUGUAAGGCUCUUUUAGAAUUUAUCUAGCAAGUUUUCUUGUUUUUACCAGAAAACUCCU hit 291 : 179490 179431 (rev) 28.18 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A+U UA+ GCUCUUUUA+AAUUU UCUAGCA G:U:UC :::U U ::: GA:A:C 1811 --ACU-GUAAGGCUCUUUUAGAAUUUAUCUAGCAAGUUUUCUUGUU-UUUACCAGAAAAC 1866 :::: 61 cccU 64 CCU 1867 UCCU 1870 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #7441,sp|AL121875.10|HSBA51C14 Human DNA sequence from clone RP11-51C14 on chromosome Xq26.2-27.3 ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUGGAAUUAGUCUAGCAGAUUUCUCAGUUUUCACUGGAAACCCU hit 292 : 53332 53390 (fwd) 31.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUU +AAUU GUCUAGCAG U:UCU U U GGA:A 53332 --AGUGUUACAGCUCUUUUGGAAUUAGUCUAGCAGA-UUUCUCAGUUUUCACUGGAAA-- 53386 :::: 61 cccU 64 CCCU 53387 CCCU 53390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----sequence: #2824,sp|AL078591.18|HSDJ198I9 Human DNA sequence from clone RP1-198I9 on chromosome 6q12-13 ----isReversed: 0 ----hitSequence: CAAGUGUUAACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUUAUUGGAAAACCUUC hit 293 : 96099 96162 (fwd) 43.89 bits :::::::::.::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUA.CAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagac 59 AAGUGUUA CAGCUCUUUUA+AAUUUGUCUAGCAGG:U:UCU :U U : GGA:A: 96099 CAAGUGUUAaCAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUU-UUUAUUGGAAAA 96157 >:::: 60 ccccU 64 CC+ 96158 CCUUC 96162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----sequence: #2904,sp|AL109925.11|HSDJ534K7 Human DNA sequence from clone RP4-534K7 on chromosome 1p31.2-32.3. Contains the PGM1 gene for phosphoglucomutase 1, a novel gen ----isReversed: 0 ----hitSequence: CAAGUAUUACAGUUCUUUUAGAAUUUGUCUAGCAGGUUCUCUGUUUUUCCAGAAAACCACC hit 294 : 140833 140893 (fwd) 42.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGU UUACAG+UCUUUUA+AAUUUGUCUAGCAGG:U UC :: U :: GA A:C 140833 CAAGUAUUACAGUUCUUUUAGAAUUUGUCUAGCAGGUUCUCUGU--UUUU-CCAGAAAAC 140889 :::: 61 cccU 64 C C 140890 CACC 140893 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----sequence: #2947,sp|AL121992.24|HSDJ680D5 Human DNA sequence from clone RP4-680D5 on chromosome 1p36.13-36.31 ----isReversed: 1 ----hitSequence: UUAGUGCUACAGUUCUUUUAGAAUUUGUCUAGCAGGGCCAGGCGCGGUGGCUCACGCCUGUAAU hit 295 : 72322 72259 (rev) 35.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUG UACAG+UCUUUUA+AAUUUGUCUAGCAG ::: ++ GU G ++ ::: 98078 UUAGUGCUACAGUUCUUUUAGAAUUUGUCUAGCAGGGCCAGGCGCGGUGGCUCACGCCUG 98137 :::: 61 cccU 64 +U 98138 UAAU 98141 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----sequence: #2987,sp|AL049636.22|HSDJ792G4 Human DNA sequence from clone RP4-792G4 on chromosome 1p31.2-32.2 Contains a transcription factor gene, a pseudogene similar to ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUAGUCUAGCAGGUUUUCCAGCUCUCACCAGAAAACUAAA hit 296 : 63054 63114 (fwd) 40.40 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____.>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaG.Gagggagac 59 AGUGUUACAGCUCUUUUA+AAUU GUCUAGCAGG:U:UC ::: U+ ::: GA:A: 63054 --AGUGUUACAGCUCUUUUAGAAUUAGUCUAGCAGGUUUUCCAGC--UCUcACCAGAAAA 63109 >:::: 60 ccccU 64 C + 63110 CUAAA 63114 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----sequence: #2996,sp|AL117349.22|HSDJ816K9 Human DNA sequence from clone RP4-816K9 on chromosome 1q42.11-43 ----isReversed: 1 ----hitSequence: UAAGUGUUAUAGCUCUUUUAGAACUUGUGUAGAAGGUUUGCUGGUUUUCACUGGAAAGCACUC hit 297 : 5916 5854 (rev) 34.49 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUA AGCUCUUUUA+AA UUGU UAG AGG:U: CU ::U U :: GG :A:C 44081 UAAGUGUUAUAGCUCUUUUAGAACUUGUGUAGAAGGUUUGCUGGUU-UUCACUGGAAAGC 44139 :::: 61 cccU 64 C 44140 ACUC 44143 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #3513,sp|AL121777.39|HSJ1057D4 Human DNA sequence from clone RP5-1057D4 on chromosome 20 Contains a spermidine synthase (SPDSY) pseudogene, a CpG island, ESTs ----isReversed: 1 ----hitSequence: AAGGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCACGUUUUCCGGUUGUCACUCCCAGG hit 298 : 63598 63541 (rev) 26.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A GUGUU+CAGCUCUUU A+AAUUUGUCUAGCA GU: U GU G A :CC 68291 AAGGUGUUCCAGCUCUUUCAGAAUUUGUCUAGCACGUUUUCCG---GUUG---UCACUCC 68344 :::: 61 cccU 64 C 68345 CAGG 68348 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #3879,sp|AL109743.4|HSJ590P13 Human DNA sequence from clone RP4-590P13 on chromosome 1p35.1-36.12 Contains the 3' end of the RPS6KA1 (ribosomal protein S6 ki ----isReversed: 1 ----hitSequence: UCAGUGUUACACCUCUUUUAGAAUUUAUCUAUCAGGUUUUCCAGUGUUCACUGAAAUUUGU hit 299 : 38545 38485 (rev) 27.35 bits ::::::::::::::::::::::::::::::::::.:<<<<<<<<<<_____>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCA.GguucucucuCUGUaGGagggagac 59 U AGUGUUACA CUCUUUUA+AAUUU UCUA CA G::U: C::U GU A::G :A: 57462 UCAGUGUUACACCUCUUUUAGAAUUUAUCUAUCAgGUUUUCCAGU--GUUC-ACUG-AAA 57517 >:::: 60 ccccU 64 : + U 57518 UUUGU 57522 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #4025,sp|AL049541.24|HSJ991B18 Human DNA sequence from clone RP5-991B18 on chromosome 20q13.11-13.3 Contains a putative novel gene, ESTs, STSs and GSSs. ----isReversed: 1 ----hitSequence: AAGGUGUUACAGCUCUUUCAGAAUUUGUCUAGCACGUUUUCCGGUUGUCACUCCCAGGUAGGCU hit 300 : 63768 63705 (rev) 30.23 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 A GUGUUACAGCUCUUU A+AAUUUGUCUAGCA : U : :UGU+ : : A : 66107 AAGGUGUUACAGCUCUUUCAGAAUUUGUCUAGCACGUUUUCCGGUUGUCACUCCCAGGUA 66166 :::: 61 cccU 64 CU 66167 GGCU 66170 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #4539,sp|Z68756.1|HSL191F1 Human DNA sequence from clone LA04NC01-191F1 on chromosome 4 ----isReversed: 0 ----hitSequence: UUAGUGCUACAGCUCUUUUGGAAUUUGUCUAGCAGGCUUUCUGGGUUUUGCUGGAAAGCCCUU hit 301 : 10206 10268 (fwd) 45.90 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUG UACAGCUCUUUU +AAUUUGUCUAGCAGG:U:UCU : U U : GGA:A:C 10206 UUAGUGCUACAGCUCUUUUGGAAUUUGUCUAGCAGGCUUUCUGGGU-UUUGCUGGAAAGC 10264 :::: 61 cccU 64 CC U 10265 CCUU 10268 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #9257,sp|AL832121.1|HSM803428 Homo sapiens mRNA; cDNA DKFZp686B2210 (from clone DKFZp686B2210) ----isReversed: 1 ----hitSequence: UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUUUGUACCAGAAAACCCCU hit 302 : 4227 4171 (rev) 33.49 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UUACAG U UUU A+AAUUUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 1046 ------UUACAGAUGUUUCAGAAUUUGUCUAGCAGGUUUUCCAGUU-UGUACCAGAAAAC 1098 :::: 61 cccU 64 CCCU 1099 CCCU 1102 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----sequence: #1620,sp|BX537717.1|HSM805793 Homo sapiens mRNA; cDNA DKFZp686G17223 (from clone DKFZp686G17223) ----isReversed: 0 ----hitSequence: GAAGUGUUACAGCUCUUUUAGAAUUGUCUAGCAGGCUUUCCAGUUUUUGCUGGAAAGCCCCU hit 303 : 3924 3985 (fwd) 50.33 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUUUA+AA UUGUCUAGCAGG:U:UC :::U U ::: GA:A:C 3924 GAAGUGUUACAGCUCUUUUAGAA-UUGUCUAGCAGGCUUUCCAGUU-UUUGCUGGAAAGC 3981 :::: 61 cccU 64 CCCU 3982 CCCU 3985 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----sequence: #9927,sp|X86019.1|HSPRPL2 H.sapiens mRNA for PRPL-2 protein ----isReversed: 0 ----hitSequence: GAAGUGUUACAGCUCUUUGAGAAUUUGUCUAGCAGGCUUUCCAGGGUUUUGCUGGAAAGCCUCU hit 304 : 2454 2517 (fwd) 45.69 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AAGUGUUACAGCUCUUU A+AAUUUGUCUAGCAGG:U:UC :: U :: GA:A:C 2454 GAAGUGUUACAGCUCUUUGAGAAUUUGUCUAGCAGGCUUUCCAGGGUUUUGCUGGAAAGC 2513 :::: 61 cccU 64 C+CU 2514 CUCU 2517 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #3368,sp|M17910.1|HSSRU7RP Human U7 small nuclear RNA (snRNP). ----isReversed: 0 ----hitSequence: NGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGCUUUUCACCGGAAAGCCCCU hit 305 : 3 64 (fwd) 54.57 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 GUGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UCU:::U U :::GGA:A:C 3 --NGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGCUUUUCACCGGAAAGC 60 :::: 61 cccU 64 CCCU 61 CCCU 64 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #7051,sp|U09822.1|HSU09822 Human cosmid clone 26h7 from Xq27.2-q27.3. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUGGAAUUAGUCUAGCAGAUUUCUCAGUUUUCACUGGAAACCCU hit 306 : 26469 26527 (fwd) 31.87 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUU +AAUU GUCUAGCAG U:UCU U U GGA:A 26469 --AGUGUUACAGCUCUUUUGGAAUUAGUCUAGCAGA-UUUCUCAGUUUUCACUGGAAA-- 26523 :::: 61 cccU 64 CCCU 26524 CCCU 26527 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #7724,sp|U47924.1|HSU47924 Human chromosome 12p13 sequence, complete sequence. ----isReversed: 0 ----hitSequence: AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGCUUUUUACCGGAAAGCCCCU hit 307 : 155826 155887 (fwd) 56.42 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 AGUGUUACAGCUCUUUUA+AAUUUGUCUAG AGG:U:UCU:::U U :::GGA:A:C 155826 --AGUGUUACAGCUCUUUUAGAAUUUGUCUAGUAGGCUUUCUGGCUUUUUACCGGAAAGC 155883 :::: 61 cccU 64 CCCU 155884 CCCU 155887 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #9454,sp|M35537.1|HSU7AA Human U7 small nuclear RNA pseudogene, fragment 32sm. ----isReversed: 0 ----hitSequence: UCAGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGUUUUCCAGAAAACCUCC hit 308 : 292 352 (fwd) 43.36 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGC CUUUUA+AAUUUGUCUAGCAGG:U:UC :: U :: GA:A:C 292 UCAGUGUUACAGCCCUUUUAGAAUUUGUCUAGCAGGUUUUCUGG--UUUU-CCAGAAAAC 348 :::: 61 cccU 64 C+C 349 CUCC 352 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #9455,sp|M35538.1|HSU7AB Human U7 small nuclear RNA pseudogene, fragment 32BG. ----isReversed: 0 ----hitSequence: UCAGUGUUACAGCUUUUAGAAUUUGUCUAGCAGGUUUUCUGGAAAACCUUCA hit 309 : 294 345 (fwd) 27.55 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGC UUUUA+AAUUUGUCUAGCAGGUU:U U G A:ACC 294 UCAGUGUUACAGC--UUUUAGAAUUUGUCUAGCAGGUUUUC------UGG----AAAACC 341 :::: 61 cccU 64 +C 342 UUCA 345 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #9456,sp|M35539.1|HSU7AC Human U7 small nuclear RNA pseudogene. ----isReversed: 0 ----hitSequence: UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGAUUUUUACCCGGAACCCCUCC hit 310 : 203 266 (fwd) 49.65 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 U AGUGUUACAGCUCUUUUA+AAUUUGUCUAGCAGGU :UCU: :U U : :GGA: CC 203 UUAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCAGGUUUUCUGAUUUUUACCCGGAACCC 262 :::: 61 cccU 64 C+C 263 CUCC 266 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #9457,sp|M35540.1|HSU7AD Human U7 small nuclear RNA pseudogene, fragment 36h. ----isReversed: 0 ----hitSequence: CGUGUUACAGCUCUUUUGGAAUUUGUCUAGCAGGUUUUCUGGUUUUCACUGCAAAACCCCA hit 311 : 230 290 (fwd) 41.39 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 GUGUUACAGCUCUUUU +AAUUUGUCUAGCAGG:U:U U ::U U :: G A:A:C 230 --CGUGUUACAGCUCUUUUGGAAUUUGUCUAGCAGGUUUUCUGGUU-UUCACUGCAAAAC 286 :::: 61 cccU 64 CCC 287 CCCA 290 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #473,sp|U91322.1|HSU91322 Human chromosome 16p13 BAC clone CIT987SK-276F8 complete sequence. ----isReversed: 1 ----hitSequence: UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCCAUAAAAAAAAGUAU hit 312 : 199713 199658 (rev) 36.30 bits :::::::::::::::::::::::::::::::::::<<<<<<<<<<_____>>>>>>>>>> 1 UAAGUGUUACAGCUCUUUUAcAAUUUGUCUAGCAGguucucucuCUGUaGGagggagacc 60 UAAGUGUUACAGCUCUUUUA+AAUUUGUCUAGC G::U:U UA A:A:: 15574 UAAGUGUUACAGCUCUUUUAGAAUUUGUCUAGCGGGUUUUCC-A---UAA----AAAAAA 15625 :::: 61 cccU 64 ++U 15626 GUAU 15629 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=8.35748e-06, 2d-fracLetsThru=4.69091e-06). Filter report: done 1.65905e+10 nucs (frac lets thru so far=8.35748e-06, 2d-fracLetsThru=4.69091e-06). done 1.65905e+10 nucs (frac lets thru so far=8.35748e-06, 2d-fracLetsThru=4.69091e-06). CPU time: 225243.03u 916.54s 62:49:19.57 Elapsed: 66:17:08