params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,13518,AF146043.1,1,sp|AF146043.1|AF146043 Sus scrofa RACK1 (RACK1) gene; complete cds.,0,0,3911,3989,31.54,GAUCCUGGUGAUGACCAAUGACAUUGUCAGCCAAUCCCCACAUGGGAAUGUGGACAUGUCCUGCAAUUCUGAAGGGAUU,AF146043.1/3911-3989,3911-3989,0,78,AF146043.1/3911-3989 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,18031,AF295529.1,1,sp|AF295529.1|AF295529 Mus musculus activated protein kinase C receptor (Rack1) gene; exons 1 through 7 and partial cds.,0,1,5361,5441,36.95,GAUCCUAGUGAUGACAAGACGACAUUGUCAACCAAUCCCCCACAAGGGAAUGAGGACAUGUCCUGCAAUUCUGAAUGGGUU,AL645849.17/61755-61835 AF295529.1/5361-5441,5361-5441,0,80,AF295529.1/5361-5441 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24590,AL645849.17,1,sp|AL645849.17|AL645849 Mouse DNA sequence from clone RP23-14F5 on chromosome 11,0,2,61755,61835,36.95,GAUCCUAGUGAUGACAAGACGACAUUGUCAACCAAUCCCCCACAAGGGAAUGAGGACAUGUCCUGCAAUUCUGAAUGGGUU,AL645849.17/61755-61835 AF295529.1/5361-5441,61755-61835,0,80,AL645849.17/61755-61835 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,71391,AJ132685.1,1,sp|AJ132685.1|MMU132685 Mus musculus mRNA for Z37 snoRNA,0,3,1,77,28.64,AUCCUAGUGAUGACAAGACGACAUUGUCAACCAAUCCCCCACAAGGGAAUGAGGACAUGUCCUGCAAUUCUGAAUGG,AJ132685.1/1-77,1-77,0,76,AJ132685.1/1-77 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,8732,AC006068.4,1,sp|AC006068.4|AC006068 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016; complete sequence.,0,4,14224,14308,44.88,UAGCCAAUGAGGACAUCAGAUUAUAAAAGAACACCAUCUUUCGGGACUGAUUAACAUUGAUGAUACUUCUGCAAUUCUGAGGCUA,AJ240068.1/1-85 AC006068.4/14224-14308,16331-16427 14224-14308,0,84,AC006068.4/14224-14308 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,8732,AC006068.4,1,sp|AC006068.4|AC006068 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016; complete sequence.,0,5,16331,16427,39.87,UAGCCGAUGUGGAUAUCAGAUUAUAAAAGAACACCAUCUUUCGGGACUGAUUGACUUCUUUUGAAGUUUUGCUGAUACUUCUGCAAUUCUGAGGCUU,AC006068.4/16331-16427,16331-16427 14224-14308,0,96,AC006068.4/16331-16427 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9543,AC096691.6,1,sp|AC096691.6|AC096691 Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence; complete sequence.,1,6,4323,4224,43.49,ACGACGGUGAUGAAAAACCGCAAGAAAAACACACCAUCUUUCGGGGCUGAUUUGGCGCCGCCGCGCGUGCAAUGAUGCUAAUUCUGCAAUUCUGAUGUCC,AC096691.6/4323-4224 AJ490494.1/3-102 AC113335.1/95144-95045 AJ458936.2/3-102 AE017084.1/189632-189731,4323-4224 3905-3812 4089-3994,0,99,AC096691.6/4323-4224 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9543,AC096691.6,1,sp|AC096691.6|AC096691 Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence; complete sequence.,1,7,3905,3812,43.05,GGACCUGUGAUGAAAUCUGGAACCAAAAAUACCAUCUUUCGGGACUGAUUUGGCUUUCAGCAGCCAUGUUGUCACUUCCAAGAUCCUGAGGUCU,AJ490498.1/2-95 AC096691.6/3905-3812 AE017084.1/190050-190143 AJ490496.1/2-95 AJ458936.2/422-515 AC113335.1/94726-94633,4323-4224 3905-3812 4089-3994,0,93,AC096691.6/3905-3812 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9543,AC096691.6,1,sp|AC096691.6|AC096691 Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence; complete sequence.,1,8,4089,3994,50.51,UGGCCGGUGAAGAAAACCUCGAUUAAAAACACCAUCUUUCGGGGCUGAUCGGCCGCCGCUCGGCGGCCAUGCUGCCAUUCUGCAAUUCUGAGGCCA,AJ458936.2/238-333 AE017084.1/189866-189961 AC096691.6/4089-3994 AJ490497.1/3-98 AJ490495.1/3-98 AC113335.1/94910-94815,4323-4224 3905-3812 4089-3994,0,95,AC096691.6/4089-3994 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9627,AC113335.1,1,sp|AC113335.1|AC113335 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07; from chromosome 10; complete sequence.,1,9,95144,95045,43.49,ACGACGGUGAUGAAAAACCGCAAGAAAAACACACCAUCUUUCGGGGCUGAUUUGGCGCCGCCGCGCGUGCAAUGAUGCUAAUUCUGCAAUUCUGAUGUCC,AC096691.6/4323-4224 AJ490494.1/3-102 AC113335.1/95144-95045 AJ458936.2/3-102 AE017084.1/189632-189731,94726-94633 95144-95045 94910-94815,0,99,AC113335.1/95144-95045 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9627,AC113335.1,1,sp|AC113335.1|AC113335 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07; from chromosome 10; complete sequence.,1,10,94726,94633,43.05,GGACCUGUGAUGAAAUCUGGAACCAAAAAUACCAUCUUUCGGGACUGAUUUGGCUUUCAGCAGCCAUGUUGUCACUUCCAAGAUCCUGAGGUCU,AJ490498.1/2-95 AC096691.6/3905-3812 AE017084.1/190050-190143 AJ490496.1/2-95 AJ458936.2/422-515 AC113335.1/94726-94633,94726-94633 95144-95045 94910-94815,0,93,AC113335.1/94726-94633 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9627,AC113335.1,1,sp|AC113335.1|AC113335 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07; from chromosome 10; complete sequence.,1,11,94910,94815,50.51,UGGCCGGUGAAGAAAACCUCGAUUAAAAACACCAUCUUUCGGGGCUGAUCGGCCGCCGCUCGGCGGCCAUGCUGCCAUUCUGCAAUUCUGAGGCCA,AJ458936.2/238-333 AE017084.1/189866-189961 AC096691.6/4089-3994 AJ490497.1/3-98 AJ490495.1/3-98 AC113335.1/94910-94815,94726-94633 95144-95045 94910-94815,0,95,AC113335.1/94910-94815 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,10364,AE017084.1,1,sp|AE017084.1|AE017084 Oryza sativa (japonica cultivar-group) chromosome 10; section 38 of 77 of the complete sequence.,0,12,189632,189731,43.49,ACGACGGUGAUGAAAAACCGCAAGAAAAACACACCAUCUUUCGGGGCUGAUUUGGCGCCGCCGCGCGUGCAAUGAUGCUAAUUCUGCAAUUCUGAUGUCC,AC096691.6/4323-4224 AJ490494.1/3-102 AC113335.1/95144-95045 AJ458936.2/3-102 AE017084.1/189632-189731,189866-189961 190050-190143 189632-189731,0,99,AE017084.1/189632-189731 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,10364,AE017084.1,1,sp|AE017084.1|AE017084 Oryza sativa (japonica cultivar-group) chromosome 10; section 38 of 77 of the complete sequence.,0,13,190050,190143,43.05,GGACCUGUGAUGAAAUCUGGAACCAAAAAUACCAUCUUUCGGGACUGAUUUGGCUUUCAGCAGCCAUGUUGUCACUUCCAAGAUCCUGAGGUCU,AJ490498.1/2-95 AC096691.6/3905-3812 AE017084.1/190050-190143 AJ490496.1/2-95 AJ458936.2/422-515 AC113335.1/94726-94633,189866-189961 190050-190143 189632-189731,0,93,AE017084.1/190050-190143 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,10364,AE017084.1,1,sp|AE017084.1|AE017084 Oryza sativa (japonica cultivar-group) chromosome 10; section 38 of 77 of the complete sequence.,0,14,189866,189961,50.51,UGGCCGGUGAAGAAAACCUCGAUUAAAAACACCAUCUUUCGGGGCUGAUCGGCCGCCGCUCGGCGGCCAUGCUGCCAUUCUGCAAUUCUGAGGCCA,AJ458936.2/238-333 AE017084.1/189866-189961 AC096691.6/4089-3994 AJ490497.1/3-98 AJ490495.1/3-98 AC113335.1/94910-94815,189866-189961 190050-190143 189632-189731,0,95,AE017084.1/189866-189961 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,102622,AJ240068.1,1,sp|AJ240068.1|ATH240068 Arabidopsis thaliana mRNA for Z37 snoRNA.,0,15,1,85,44.88,UAGCCAAUGAGGACAUCAGAUUAUAAAAGAACACCAUCUUUCGGGACUGAUUAACAUUGAUGAUACUUCUGCAAUUCUGAGGCUA,AJ240068.1/1-85 AC006068.4/14224-14308,1-85,0,84,AJ240068.1/1-85 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,102640,AJ242537.1,1,sp|AJ242537.1|ATH242537 Arabidopsis thaliana Z37b gene for small nucleolar RNA,0,16,1,95,37.56,AGCCGAUGUGGAUAUCAGAUUAUAAAAGAACACCAUCUUUCGGGACUGAUUGACUUCUUUUGAAGUUUUGCUGAUACUUCUGCAAUUCUGAGGCU,AJ242537.1/1-95,1-95,0,94,AJ242537.1/1-95 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,197735,AJ458936.2,1,sp|AJ458936.2|OSA458936 Oryza sativa snoRNA gene cluster X,0,17,3,102,43.49,ACGACGGUGAUGAAAAACCGCAAGAAAAACACACCAUCUUUCGGGGCUGAUUUGGCGCCGCCGCGCGUGCAAUGAUGCUAAUUCUGCAAUUCUGAUGUCC,AC096691.6/4323-4224 AJ490494.1/3-102 AC113335.1/95144-95045 AJ458936.2/3-102 AE017084.1/189632-189731,238-333 422-515 3-102,0,99,AJ458936.2/3-102 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,197735,AJ458936.2,1,sp|AJ458936.2|OSA458936 Oryza sativa snoRNA gene cluster X,0,18,422,515,43.05,GGACCUGUGAUGAAAUCUGGAACCAAAAAUACCAUCUUUCGGGACUGAUUUGGCUUUCAGCAGCCAUGUUGUCACUUCCAAGAUCCUGAGGUCU,AJ490498.1/2-95 AC096691.6/3905-3812 AE017084.1/190050-190143 AJ490496.1/2-95 AJ458936.2/422-515 AC113335.1/94726-94633,238-333 422-515 3-102,0,93,AJ458936.2/422-515 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,197735,AJ458936.2,1,sp|AJ458936.2|OSA458936 Oryza sativa snoRNA gene cluster X,0,19,238,333,50.51,UGGCCGGUGAAGAAAACCUCGAUUAAAAACACCAUCUUUCGGGGCUGAUCGGCCGCCGCUCGGCGGCCAUGCUGCCAUUCUGCAAUUCUGAGGCCA,AJ458936.2/238-333 AE017084.1/189866-189961 AC096691.6/4089-3994 AJ490497.1/3-98 AJ490495.1/3-98 AC113335.1/94910-94815,238-333 422-515 3-102,0,95,AJ458936.2/238-333 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,197936,AJ490494.1,1,sp|AJ490494.1|OSA490494 Oryza sativa z125a snoRNA gene,0,20,3,102,43.49,ACGACGGUGAUGAAAAACCGCAAGAAAAACACACCAUCUUUCGGGGCUGAUUUGGCGCCGCCGCGCGUGCAAUGAUGCUAAUUCUGCAAUUCUGAUGUCC,AC096691.6/4323-4224 AJ490494.1/3-102 AC113335.1/95144-95045 AJ458936.2/3-102 AE017084.1/189632-189731,3-102,0,99,AJ490494.1/3-102 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,197937,AJ490495.1,1,sp|AJ490495.1|OSA490495 Oryza sativa z125b snoRNA gene,0,21,3,98,50.51,UGGCCGGUGAAGAAAACCUCGAUUAAAAACACCAUCUUUCGGGGCUGAUCGGCCGCCGCUCGGCGGCCAUGCUGCCAUUCUGCAAUUCUGAGGCCA,AJ458936.2/238-333 AE017084.1/189866-189961 AC096691.6/4089-3994 AJ490497.1/3-98 AJ490495.1/3-98 AC113335.1/94910-94815,3-98,0,95,AJ490495.1/3-98 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,197938,AJ490496.1,1,sp|AJ490496.1|OSA490496 Oryza sativa z125c snoRNA gene,0,22,2,95,43.05,GGACCUGUGAUGAAAUCUGGAACCAAAAAUACCAUCUUUCGGGACUGAUUUGGCUUUCAGCAGCCAUGUUGUCACUUCCAAGAUCCUGAGGUCU,AJ490498.1/2-95 AC096691.6/3905-3812 AE017084.1/190050-190143 AJ490496.1/2-95 AJ458936.2/422-515 AC113335.1/94726-94633,2-95,0,93,AJ490496.1/2-95 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,197939,AJ490497.1,1,sp|AJ490497.1|OSA490497 Oryza sativa z125d snoRNA gene,0,23,3,98,50.51,UGGCCGGUGAAGAAAACCUCGAUUAAAAACACCAUCUUUCGGGGCUGAUCGGCCGCCGCUCGGCGGCCAUGCUGCCAUUCUGCAAUUCUGAGGCCA,AJ458936.2/238-333 AE017084.1/189866-189961 AC096691.6/4089-3994 AJ490497.1/3-98 AJ490495.1/3-98 AC113335.1/94910-94815,3-98,0,95,AJ490497.1/3-98 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,197940,AJ490498.1,1,sp|AJ490498.1|OSA490498 Oryza sativa z125e snoRNA gene,0,24,2,95,43.05,GGACCUGUGAUGAAAUCUGGAACCAAAAAUACCAUCUUUCGGGACUGAUUUGGCUUUCAGCAGCCAUGUUGUCACUUCCAAGAUCCUGAGGUCU,AJ490498.1/2-95 AC096691.6/3905-3812 AE017084.1/190050-190143 AJ490496.1/2-95 AJ458936.2/422-515 AC113335.1/94726-94633,2-95,0,93,AJ490498.1/2-95 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,197978,AJ494939.1,1,sp|AJ494939.1|OSA494939 Oryza sativa Z233 snoRNA gene,0,25,3,102,31.99,UGGACGGUGAUGAAAAACUGCAAGAAAAAAACACCACCAUCUUUCGGGGUUGAUUGGCAUGGCCUUGGGCCAUGCUGCCAACUCUGCAAUUCUGAUGUCC,AJ494939.1/3-102,3-102,0,99,AJ494939.1/3-102 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,1,26,62431,62354,27.12,GGUCCUGGUGAUGACAGAUGGCAUUGUCAGCCAAUCCCCAAGUGGGAGUGAGGACAUGUCCUGCAAUUCUGAAGGGAU,AC008443.10/62431-62354,62431-62354,0,77,AC008443.10/62431-62354 ./cmzasha --no-stderr --filter 150 23 Rfam/cm/RF00055.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00055_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin ,Rfam/cm/RF00055.cm (global),/projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz,3782,AL079334.7,1,sp|AL079334.7|HSJ300O13 Human DNA sequence from clone RP1-300O13 on chromosome Xq22.1-24 Contains ESTs; STSs and GSSs.,0,27,55769,55847,23.59,GAUCCUGGUGAUGACAGACGACAUUGUCAGCCAAUCCCCAUGUGGUAGUGAGGACAUGUCCUGCAGUUCUGAAGGGAUU,AL079334.7/55769-55847,55769-55847,0,78,AL079334.7/55769-55847 THINGS IN Rfam THAT WEREN'T FOUND: # hits found that weren't in Rfam: 0 (totally new = 0, overlaps hit in Rfam = 0, overlap hits with more than 10 nucs = 0, total # hits with 0 overlap with Rfam (ignoring sequence matching) = 0) # Rfam hits not found: 0 (no overlap of >= 10 nucs: 0) # Rfam seqs not found: 0 (no overlap of >= 10 nucs: too tricky to calculate)