params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,54478,U40654.1,1,sp|U40654.1|MM40654 Mus musculus U22 snoRNA host gene (UHG) gene; complete sequence.,0,0,666,735,27.84,CCCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAUAUAUCUGUGAGGAUAAGUAACUCUGAGGAGGC,U40654.1/666-735,666-735,0,69,U40654.1/666-735 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,2034,AB020755.1,1,sp|AB020755.1|AB020755 Arabidopsis thaliana genomic DNA; chromosome 5; P1 clone:MZN1.,1,1,17859,17775,49.76,AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU,AF317998.1/4-88 AB020755.1/17859-17775 AL096860.1/44800-44884 AF317999.1/3-87 AJ240066.1/2-86 AJ276573.1/1-85,17859-17775,0,84,AB020755.1/17859-17775 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,39823,AF317998.1,1,sp|AF317998.1|AF317998 Arabidopsis thaliana clone 1 small nucleolar RNA R73; complete sequence.,0,2,4,88,49.76,AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU,AF317998.1/4-88 AB020755.1/17859-17775 AL096860.1/44800-44884 AF317999.1/3-87 AJ240066.1/2-86 AJ276573.1/1-85,4-88,0,84,AF317998.1/4-88 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,39824,AF317999.1,1,sp|AF317999.1|AF317999 Arabidopsis thaliana clone 2 small nucleolar RNA R73; complete sequence.,0,3,3,87,49.76,AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU,AF317998.1/4-88 AB020755.1/17859-17775 AL096860.1/44800-44884 AF317999.1/3-87 AJ240066.1/2-86 AJ276573.1/1-85,3-87,0,84,AF317999.1/3-87 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,102620,AJ240066.1,1,sp|AJ240066.1|ATH240066 Arabidopsis thaliana mRNA for U25 snoRNA.,0,4,2,86,49.76,AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU,AF317998.1/4-88 AB020755.1/17859-17775 AL096860.1/44800-44884 AF317999.1/3-87 AJ240066.1/2-86 AJ276573.1/1-85,2-86,0,84,AJ240066.1/2-86 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,102813,AJ276573.1,1,sp|AJ276573.1|ATH276573 Arabidopsis thaliana U25b snoRNA gene,0,5,1,85,49.76,AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU,AF317998.1/4-88 AB020755.1/17859-17775 AL096860.1/44800-44884 AF317999.1/3-87 AJ240066.1/2-86 AJ276573.1/1-85,1-85,0,84,AJ276573.1/1-85 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119331,AL096860.1,1,sp|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3; BAC clone T21L8,0,6,44800,44884,49.76,AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU,AF317998.1/4-88 AB020755.1/17859-17775 AL096860.1/44800-44884 AF317999.1/3-87 AJ240066.1/2-86 AJ276573.1/1-85,44800-44884,0,84,AL096860.1/44800-44884 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,149179,AY103178.1,1,sp|AY103178.1|AY103178 Oryza sativa (indica cultivar-group) snoRNA J4.4 gene; complete sequence.,0,7,4,91,63.71,GGCAACAGUGAUGAGUCCUUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUAUC,AJ532528.1/4-91 AY103178.1/4-91 AL662969.3/87797-87884,4-91,0,87,AY103178.1/4-91 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,149180,AY103179.1,1,sp|AY103179.1|AY103179 Oryza sativa (indica cultivar-group) snoRNA J4.1 gene; complete sequence.,0,8,6,93,65.15,UGUGGCAGUGAUGAGCCCUAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUGUC,AL662969.3/86448-86535 AY103179.1/6-93,6-93,0,87,AY103179.1/6-93 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,149181,AY103180.1,1,sp|AY103180.1|AY103180 Oryza sativa (indica cultivar-group) snoRNA J4.2 gene; complete sequence.,0,9,27,114,58.19,CAUGGCGGUCUUGAGCCCUAACAGACCUGAAAUAAUUAUUGCGGAUAUGAUUGCUUAAUUCAGAGCACAUCUAAGGGACUGAGUUGCC,AY103180.1/27-114 AL662969.3/86874-86961,27-114,0,87,AY103180.1/27-114 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,149182,AY103181.1,1,sp|AY103181.1|AY103181 Oryza sativa (indica cultivar-group) snoRNA J4.3 gene; complete sequence.,0,10,57,143,59.61,UUUGACGGUGAUUAGCCCUAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGAUCAAAGAACAUCUAAGGGACUGAGUAAUA,AJ532527.1/1-87 AY103181.1/57-143 AL662969.3/87631-87717,57-143,0,86,AY103181.1/57-143 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198073,AJ532526.1,1,sp|AJ532526.1|OSA532526 Oryza sativa snoR19a snoRNA gene,0,11,1,86,57.50,GUGGCAGUGAUGAGCCCUAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUGU,AJ532526.1/1-86,1-86,0,85,AJ532526.1/1-86 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198074,AJ532527.1,1,sp|AJ532527.1|OSA532527 Oryza sativa snoR19b snoRNA gene,0,12,1,87,59.61,UUUGACGGUGAUUAGCCCUAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGAUCAAAGAACAUCUAAGGGACUGAGUAAUA,AJ532527.1/1-87 AY103181.1/57-143 AL662969.3/87631-87717,1-87,0,86,AJ532527.1/1-87 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198075,AJ532528.1,1,sp|AJ532528.1|OSA532528 Oryza sativa snoR19c snoRNA gene,0,13,4,91,63.71,GGCAACAGUGAUGAGUCCUUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUAUC,AJ532528.1/4-91 AY103178.1/4-91 AL662969.3/87797-87884,4-91,0,87,AJ532528.1/4-91 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198076,AJ532529.1,1,sp|AJ532529.1|OSA532529 Oryza sativa snoR19d snoRNA gene,0,14,2,87,50.72,AGCAACGGUGAUGAGUCCUACAGACCUGUAAUGACUCCUGCGGAGAUGAUCGCAUGGUCAAAGAACAUCUAAGGGACUGAGUUGUC,AJ532529.1/2-87,2-87,0,85,AJ532529.1/2-87 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198684,AL662969.3,1,sp|AL662969.3|OSJN00169 Oryza sativa genomic DNA; chromosome 4; BAC clone: OSJNBa0043L24.,0,15,86448,86535,65.15,UGUGGCAGUGAUGAGCCCUAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUGUC,AL662969.3/86448-86535 AY103179.1/6-93,86448-86535 86874-86961 87631-87717 87797-87884,0,87,AL662969.3/86448-86535 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198684,AL662969.3,1,sp|AL662969.3|OSJN00169 Oryza sativa genomic DNA; chromosome 4; BAC clone: OSJNBa0043L24.,0,16,86874,86961,58.19,CAUGGCGGUCUUGAGCCCUAACAGACCUGAAAUAAUUAUUGCGGAUAUGAUUGCUUAAUUCAGAGCACAUCUAAGGGACUGAGUUGCC,AY103180.1/27-114 AL662969.3/86874-86961,86448-86535 86874-86961 87631-87717 87797-87884,0,87,AL662969.3/86874-86961 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198684,AL662969.3,1,sp|AL662969.3|OSJN00169 Oryza sativa genomic DNA; chromosome 4; BAC clone: OSJNBa0043L24.,0,17,87797,87884,63.71,GGCAACAGUGAUGAGUCCUUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUAUC,AJ532528.1/4-91 AY103178.1/4-91 AL662969.3/87797-87884,86448-86535 86874-86961 87631-87717 87797-87884,0,87,AL662969.3/87797-87884 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198684,AL662969.3,1,sp|AL662969.3|OSJN00169 Oryza sativa genomic DNA; chromosome 4; BAC clone: OSJNBa0043L24.,0,18,87631,87717,59.61,UUUGACGGUGAUUAGCCCUAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGAUCAAAGAACAUCUAAGGGACUGAGUAAUA,AJ532527.1/1-87 AY103181.1/57-143 AL662969.3/87631-87717,86448-86535 86874-86961 87631-87717 87797-87884,0,86,AL662969.3/87631-87717 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz,6460,AK095849.1,1,sp|AK095849.1|AK095849 Homo sapiens cDNA FLJ38530 fis; clone HCHON2001039.,0,19,255,322,25.22,UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU,AP001160.4/132932-132865 BC017253.1/130-197 AK095849.1/255-322 BC027980.1/125-192 BC011809.1/130-197 AP000438.5/23026-22959 U40580.1/750-817,255-322,0,67,AK095849.1/255-322 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,6455,AP000438.5,1,sp|AP000438.5|AP000438 Homo sapiens genomic DNA; chromosome 11q clone:CMB9-43M24.,1,20,23026,22959,25.22,UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU,AP001160.4/132932-132865 BC017253.1/130-197 AK095849.1/255-322 BC027980.1/125-192 BC011809.1/130-197 AP000438.5/23026-22959 U40580.1/750-817,23026-22959,0,67,AP000438.5/23026-22959 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,6864,AP001160.4,1,sp|AP001160.4|AP001160 Homo sapiens genomic DNA; chromosome 11q clone:RP11-727F15; complete sequences.,1,21,132932,132865,25.22,UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU,AP001160.4/132932-132865 BC017253.1/130-197 AK095849.1/255-322 BC027980.1/125-192 BC011809.1/130-197 AP000438.5/23026-22959 U40580.1/750-817,132932-132865,0,67,AP001160.4/132932-132865 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz,8861,BC000839.1,1,sp|BC000839.1|BC000839 Homo sapiens; clone IMAGE:3457003; mRNA.,0,22,111,178,24.10,UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAGUAACUCUGAGGAGAU,L36587.1/100-167 BC000839.1/111-178,111-178,0,67,BC000839.1/111-178 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz,5484,BC011809.1,1,sp|BC011809.1|BC011809 Homo sapiens; clone IMAGE:2960021; mRNA.,0,23,130,197,25.22,UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU,AP001160.4/132932-132865 BC017253.1/130-197 AK095849.1/255-322 BC027980.1/125-192 BC011809.1/130-197 AP000438.5/23026-22959 U40580.1/750-817,130-197,0,67,BC011809.1/130-197 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz,8497,BC017253.1,1,sp|BC017253.1|BC017253 Homo sapiens; clone IMAGE:2960008; mRNA.,0,24,130,197,25.22,UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU,AP001160.4/132932-132865 BC017253.1/130-197 AK095849.1/255-322 BC027980.1/125-192 BC011809.1/130-197 AP000438.5/23026-22959 U40580.1/750-817,130-197,0,67,BC017253.1/130-197 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz,1868,BC027980.1,1,sp|BC027980.1|BC027980 Homo sapiens; clone IMAGE:3855154; mRNA.,0,25,125,192,25.22,UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU,AP001160.4/132932-132865 BC017253.1/130-197 AK095849.1/255-322 BC027980.1/125-192 BC011809.1/130-197 AP000438.5/23026-22959 U40580.1/750-817,125-192,0,67,BC027980.1/125-192 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz,8549,U40580.1,1,sp|U40580.1|HS405801 Human U22 snoRNA host gene (UHG) gene; complete sequence.,0,26,750,817,25.22,UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU,AP001160.4/132932-132865 BC017253.1/130-197 AK095849.1/255-322 BC027980.1/125-192 BC011809.1/130-197 AP000438.5/23026-22959 U40580.1/750-817,750-817,0,67,U40580.1/750-817 ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00054.cm (global),/projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz,1272,L36587.1,1,sp|L36587.1|HSUHGA Homo sapiens spliced UHG RNA.,0,27,100,167,24.10,UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAGUAACUCUGAGGAGAU,L36587.1/100-167 BC000839.1/111-178,100-167,0,67,L36587.1/100-167 THINGS IN Rfam THAT WEREN'T FOUND: # hits found that weren't in Rfam: 0 (totally new = 0, overlaps hit in Rfam = 0, overlap hits with more than 10 nucs = 0, total # hits with 0 overlap with Rfam (ignoring sequence matching) = 0) # Rfam hits not found: 0 (no overlap of >= 10 nucs: 0) # Rfam seqs not found: 0 (no overlap of >= 10 nucs: too tricky to calculate)