Params: ./cmzasha --no-stderr --filter 150 24 Rfam/cm/RF00054.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00054_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: recycle.cs.washington.edu pid: 9145 ----cmFile: Rfam/cm/RF00054.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #54478,sp|U40654.1|MM40654 Mus musculus U22 snoRNA host gene (UHG) gene, complete sequence. ----isReversed: 0 ----hitSequence: CCCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAUAUAUCUGUGAGGAUAAGUAACUCUGAGGAGGC hit 0 : 666 735 (fwd) 27.84 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 +:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GAUAU 666 CCCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAUAUAU-------- 707 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C+GUGA++AU++++++++CUGA::AG:C 708 --CUGUGAGGAUAAGUAACUCUGAGGAGGC 735 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #2034,sp|AB020755.1|AB020755 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1. ----isReversed: 1 ----hitSequence: AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU hit 1 : 17859 17775 (rev) 49.76 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 :::ACAGUGAUGAG+C +UU+ACAGACCUGUAAUGA UUGCGG +AUGAUCGC U A 63814 AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGA---UUGCGGUAAUGAUCGCAUUA 63870 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 ++UGAACAUCUAAGGGACUGAGU:::+ 63871 --UUAUGAACAUCUAAGGGACUGAGUUCUU 63898 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #39823,sp|AF317998.1|AF317998 Arabidopsis thaliana clone 1 small nucleolar RNA R73, complete sequence. ----isReversed: 0 ----hitSequence: AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU hit 2 : 4 88 (fwd) 49.76 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 :::ACAGUGAUGAG+C +UU+ACAGACCUGUAAUGA UUGCGG +AUGAUCGC U A 4 AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGA---UUGCGGUAAUGAUCGCAUUA 60 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 ++UGAACAUCUAAGGGACUGAGU:::+ 61 --UUAUGAACAUCUAAGGGACUGAGUUCUU 88 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #39824,sp|AF317999.1|AF317999 Arabidopsis thaliana clone 2 small nucleolar RNA R73, complete sequence. ----isReversed: 0 ----hitSequence: AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU hit 3 : 3 87 (fwd) 49.76 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 :::ACAGUGAUGAG+C +UU+ACAGACCUGUAAUGA UUGCGG +AUGAUCGC U A 3 AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGA---UUGCGGUAAUGAUCGCAUUA 59 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 ++UGAACAUCUAAGGGACUGAGU:::+ 60 --UUAUGAACAUCUAAGGGACUGAGUUCUU 87 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102620,sp|AJ240066.1|ATH240066 Arabidopsis thaliana mRNA for U25 snoRNA. ----isReversed: 0 ----hitSequence: AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU hit 4 : 2 86 (fwd) 49.76 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 :::ACAGUGAUGAG+C +UU+ACAGACCUGUAAUGA UUGCGG +AUGAUCGC U A 2 AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGA---UUGCGGUAAUGAUCGCAUUA 58 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 ++UGAACAUCUAAGGGACUGAGU:::+ 59 --UUAUGAACAUCUAAGGGACUGAGUUCUU 86 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102813,sp|AJ276573.1|ATH276573 Arabidopsis thaliana U25b snoRNA gene ----isReversed: 0 ----hitSequence: AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU hit 5 : 1 85 (fwd) 49.76 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 :::ACAGUGAUGAG+C +UU+ACAGACCUGUAAUGA UUGCGG +AUGAUCGC U A 1 AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGA---UUGCGGUAAUGAUCGCAUUA 57 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 ++UGAACAUCUAAGGGACUGAGU:::+ 58 --UUAUGAACAUCUAAGGGACUGAGUUCUU 85 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119331,sp|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8 ----isReversed: 0 ----hitSequence: AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGAUUGCGGUAAUGAUCGCAUUAUUAUGAACAUCUAAGGGACUGAGUUCUU hit 6 : 44800 44884 (fwd) 49.76 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 :::ACAGUGAUGAG+C +UU+ACAGACCUGUAAUGA UUGCGG +AUGAUCGC U A 44800 AAGAACAGUGAUGAGUCAGUUUACAGACCUGUAAUGA---UUGCGGUAAUGAUCGCAUUA 44856 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 ++UGAACAUCUAAGGGACUGAGU:::+ 44857 --UUAUGAACAUCUAAGGGACUGAGUUCUU 44884 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #149179,sp|AY103178.1|AY103178 Oryza sativa (indica cultivar-group) snoRNA J4.4 gene, complete sequence. ----isReversed: 0 ----hitSequence: GGCAACAGUGAUGAGUCCUUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUAUC hit 7 : 4 91 (fwd) 63.71 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 G::ACAGUGAUGAG+CC U+ACAGACCUGUAAUGAUUCUUGCGG +AUGAUCGCUUGA 4 GGCAACAGUGAUGAGUCC--UUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGA 61 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 UUCA++GAACAUCUAAGGGACUGAGU::UC 62 UUCAAAGAACAUCUAAGGGACUGAGUUAUC 91 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #149180,sp|AY103179.1|AY103179 Oryza sativa (indica cultivar-group) snoRNA J4.1 gene, complete sequence. ----isReversed: 0 ----hitSequence: UGUGGCAGUGAUGAGCCCUAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUGUC hit 8 : 6 93 (fwd) 65.15 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 UG:::CAGUGAUGAGCCC UAACAGACCUGUAAUGAUUCUUG G AUAUGAUCGCUUGA 6 UGUGGCAGUGAUGAGCCC--UAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGA 63 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 UUCA++GAACAUCUAAGGGACUGAG:::UC 64 UUCAAAGAACAUCUAAGGGACUGAGUUGUC 93 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #149181,sp|AY103180.1|AY103180 Oryza sativa (indica cultivar-group) snoRNA J4.2 gene, complete sequence. ----isReversed: 0 ----hitSequence: CAUGGCGGUCUUGAGCCCUAACAGACCUGAAAUAAUUAUUGCGGAUAUGAUUGCUUAAUUCAGAGCACAUCUAAGGGACUGAGUUGCC hit 9 : 27 114 (fwd) 58.19 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 +::::C+GU UGAGCCC UAACAGACCUG AAU AUU+UUGCGGAUAUGAU GCUU A 27 CAUGGCGGUCUUGAGCCC--UAACAGACCUGAAAUAAUUAUUGCGGAUAUGAUUGCUUAA 84 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 UUCAG+G ACAUCUAAGGGACUGAG::::C 85 UUCAGAGCACAUCUAAGGGACUGAGUUGCC 114 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #149182,sp|AY103181.1|AY103181 Oryza sativa (indica cultivar-group) snoRNA J4.3 gene, complete sequence. ----isReversed: 0 ----hitSequence: UUUGACGGUGAUUAGCCCUAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGAUCAAAGAACAUCUAAGGGACUGAGUAAUA hit 10 : 57 143 (fwd) 59.61 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U+::AC+GUGAU AGCCC UAACAGACCUGUAAUGAUUCUUGCGGAUA GAUCGCUUGA 57 UUUGACGGUGAUUAGCCC--UAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGA 114 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 U CA++GAACAUCUAAGGGACUGAGU::+ 115 U-CAAAGAACAUCUAAGGGACUGAGUAAUA 143 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #198073,sp|AJ532526.1|OSA532526 Oryza sativa snoR19a snoRNA gene ----isReversed: 0 ----hitSequence: GUGGCAGUGAUGAGCCCUAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUGU hit 11 : 1 86 (fwd) 57.50 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 G:::CAGUGAUGAGCCC UAACAGACCUGUAAUGAUUCUUG G AUAUGAUCGCUUGA 1 -GUGGCAGUGAUGAGCCC--UAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGA 57 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 UUCA++GAACAUCUAAGGGACUGAG:::U 58 UUCAAAGAACAUCUAAGGGACUGAGUUGU- 86 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #198074,sp|AJ532527.1|OSA532527 Oryza sativa snoR19b snoRNA gene ----isReversed: 0 ----hitSequence: UUUGACGGUGAUUAGCCCUAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGAUCAAAGAACAUCUAAGGGACUGAGUAAUA hit 12 : 1 87 (fwd) 59.61 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U+::AC+GUGAU AGCCC UAACAGACCUGUAAUGAUUCUUGCGGAUA GAUCGCUUGA 1 UUUGACGGUGAUUAGCCC--UAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGA 58 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 U CA++GAACAUCUAAGGGACUGAGU::+ 59 U-CAAAGAACAUCUAAGGGACUGAGUAAUA 87 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #198075,sp|AJ532528.1|OSA532528 Oryza sativa snoR19c snoRNA gene ----isReversed: 0 ----hitSequence: GGCAACAGUGAUGAGUCCUUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUAUC hit 13 : 4 91 (fwd) 63.71 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 G::ACAGUGAUGAG+CC U+ACAGACCUGUAAUGAUUCUUGCGG +AUGAUCGCUUGA 4 GGCAACAGUGAUGAGUCC--UUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGA 61 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 UUCA++GAACAUCUAAGGGACUGAGU::UC 62 UUCAAAGAACAUCUAAGGGACUGAGUUAUC 91 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #198076,sp|AJ532529.1|OSA532529 Oryza sativa snoR19d snoRNA gene ----isReversed: 0 ----hitSequence: AGCAACGGUGAUGAGUCCUACAGACCUGUAAUGACUCCUGCGGAGAUGAUCGCAUGGUCAAAGAACAUCUAAGGGACUGAGUUGUC hit 14 : 2 87 (fwd) 50.72 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 GC:AC+GUGAUGAG+CC U ACAGACCUGUAAUGA UC UGCGGA AUGAUCGC UG 2 AGCAACGGUGAUGAGUCC--U-ACAGACCUGUAAUGACUCCUGCGGAGAUGAUCGCAUGG 58 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 U CA++GAACAUCUAAGGGACUGAGU:GUC 59 U-CAAAGAACAUCUAAGGGACUGAGUUGUC 87 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #198684,sp|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24. ----isReversed: 0 ----hitSequence: UGUGGCAGUGAUGAGCCCUAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUGUC hit 15 : 86448 86535 (fwd) 65.15 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 UG:::CAGUGAUGAGCCC UAACAGACCUGUAAUGAUUCUUG G AUAUGAUCGCUUGA 86448 UGUGGCAGUGAUGAGCCC--UAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGA 86505 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 UUCA++GAACAUCUAAGGGACUGAG:::UC 86506 UUCAAAGAACAUCUAAGGGACUGAGUUGUC 86535 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #198684,sp|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24. ----isReversed: 0 ----hitSequence: CAUGGCGGUCUUGAGCCCUAACAGACCUGAAAUAAUUAUUGCGGAUAUGAUUGCUUAAUUCAGAGCACAUCUAAGGGACUGAGUUGCC hit 16 : 86874 86961 (fwd) 58.19 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 +::::C+GU UGAGCCC UAACAGACCUG AAU AUU+UUGCGGAUAUGAU GCUU A 86874 CAUGGCGGUCUUGAGCCC--UAACAGACCUGAAAUAAUUAUUGCGGAUAUGAUUGCUUAA 86931 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 UUCAG+G ACAUCUAAGGGACUGAG::::C 86932 UUCAGAGCACAUCUAAGGGACUGAGUUGCC 86961 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #198684,sp|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24. ----isReversed: 0 ----hitSequence: GGCAACAGUGAUGAGUCCUUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUAUC hit 17 : 87797 87884 (fwd) 63.71 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 G::ACAGUGAUGAG+CC U+ACAGACCUGUAAUGAUUCUUGCGG +AUGAUCGCUUGA 87797 GGCAACAGUGAUGAGUCC--UUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGA 87854 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 UUCA++GAACAUCUAAGGGACUGAGU::UC 87855 UUCAAAGAACAUCUAAGGGACUGAGUUAUC 87884 ----endhit ----hitSequence: UUUGACGGUGAUUAGCCCUAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGAUCAAAGAACAUCUAAGGGACUGAGUAAUA hit 18 : 87631 87717 (fwd) 59.61 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U+::AC+GUGAU AGCCC UAACAGACCUGUAAUGAUUCUUGCGGAUA GAUCGCUUGA 87631 UUUGACGGUGAUUAGCCC--UAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGA 87688 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 U CA++GAACAUCUAAGGGACUGAGU::+ 87689 U-CAAAGAACAUCUAAGGGACUGAGUAAUA 87717 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #6460,sp|AK095849.1|AK095849 Homo sapiens cDNA FLJ38530 fis, clone HCHON2001039. ----isReversed: 0 ----hitSequence: UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU hit 19 : 255 322 (fwd) 25.22 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GA U 255 UUCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAGCU---------- 294 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C GUGA++AU++A+++++CUGA::AG:+ 295 --CCGUGAGGAUAAAUAACUCUGAGGAGAU 322 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6455,sp|AP000438.5|AP000438 Homo sapiens genomic DNA, chromosome 11q clone:CMB9-43M24. ----isReversed: 1 ----hitSequence: UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU hit 20 : 23026 22959 (rev) 25.22 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GA U 125685 UUCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAGCU---------- 125724 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C GUGA++AU++A+++++CUGA::AG:+ 125725 --CCGUGAGGAUAAAUAACUCUGAGGAGAU 125752 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6864,sp|AP001160.4|AP001160 Homo sapiens genomic DNA, chromosome 11q clone:RP11-727F15, complete sequences. ----isReversed: 1 ----hitSequence: UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU hit 21 : 132932 132865 (rev) 25.22 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GA U 51871 UUCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAGCU---------- 51910 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C GUGA++AU++A+++++CUGA::AG:+ 51911 --CCGUGAGGAUAAAUAACUCUGAGGAGAU 51938 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----sequence: #8861,sp|BC000839.1|BC000839 Homo sapiens, clone IMAGE:3457003, mRNA. ----isReversed: 0 ----hitSequence: UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAGUAACUCUGAGGAGAU hit 22 : 111 178 (fwd) 24.10 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GA U 111 UUCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAGCU---------- 150 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C GUGA++AU++++++++CUGA::AG:+ 151 --CCGUGAGGAUAAGUAACUCUGAGGAGAU 178 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----sequence: #5484,sp|BC011809.1|BC011809 Homo sapiens, clone IMAGE:2960021, mRNA. ----isReversed: 0 ----hitSequence: UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU hit 23 : 130 197 (fwd) 25.22 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GA U 130 UUCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAGCU---------- 169 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C GUGA++AU++A+++++CUGA::AG:+ 170 --CCGUGAGGAUAAAUAACUCUGAGGAGAU 197 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----sequence: #8497,sp|BC017253.1|BC017253 Homo sapiens, clone IMAGE:2960008, mRNA. ----isReversed: 0 ----hitSequence: UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU hit 24 : 130 197 (fwd) 25.22 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GA U 130 UUCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAGCU---------- 169 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C GUGA++AU++A+++++CUGA::AG:+ 170 --CCGUGAGGAUAAAUAACUCUGAGGAGAU 197 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----sequence: #1868,sp|BC027980.1|BC027980 Homo sapiens, clone IMAGE:3855154, mRNA. ----isReversed: 0 ----hitSequence: UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU hit 25 : 125 192 (fwd) 25.22 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GA U 125 UUCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAGCU---------- 164 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C GUGA++AU++A+++++CUGA::AG:+ 165 --CCGUGAGGAUAAAUAACUCUGAGGAGAU 192 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----sequence: #8549,sp|U40580.1|HS405801 Human U22 snoRNA host gene (UHG) gene, complete sequence. ----isReversed: 0 ----hitSequence: UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAU hit 26 : 750 817 (fwd) 25.22 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GA U 750 UUCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAGCU---------- 789 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C GUGA++AU++A+++++CUGA::AG:+ 790 --CCGUGAGGAUAAAUAACUCUGAGGAGAU 817 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1272,sp|L36587.1|HSUHGA Homo sapiens spliced UHG RNA. ----isReversed: 0 ----hitSequence: UUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAGUAACUCUGAGGAGAU hit 27 : 100 167 (fwd) 24.10 bits :<<<<<______________________________________________________ 1 ugccacaGUgaUGAGCCcuUUaACAGACCUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgA 60 U:CC::+G++++G++CC+UUU+ACAGACCUGUA C+GA U 100 UUCCUAUGAUGAGGACCUUUUCACAGACCUGUA----------CUGAGCU---------- 139 ________________________>>>>>: 61 UUCaguGAACAUCUAAGGGACUGAguaguc 90 C GUGA++AU++++++++CUGA::AG:+ 140 --CCGUGAGGAUAAGUAACUCUGAGGAGAU 167 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=2.29408e-07, 2d-fracLetsThru=1.1696e-07). Filter report: done 1.65905e+10 nucs (frac lets thru so far=2.29408e-07, 2d-fracLetsThru=1.1696e-07). done 1.65905e+10 nucs (frac lets thru so far=2.29408e-07, 2d-fracLetsThru=1.1696e-07). CPU time: 325596.69u 1057.51s 90:44:14.20 Elapsed: 94:12:47