params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64900,AL355926.1,1,sp|AL355926.1|NCB17C10 Neurospora crassa DNA linkage group II BAC clone B17C10,1,0,57052,57026,23.63,GGUCUCUGCAACAGUGUUUGCAUAAAC,**** NEW HIT #0 ****,,2,0,AL355926.1/57052-57026 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,69345,X59720.2,1,sp|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence,1,1,224375,224349,22.06,UCUCUCUUUCGCAGUGCUGAAAAGAAA,**** NEW HIT #1 ****,,2,0,X59720.2/224375-224349 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,13377,AF068224.1,1,sp|AF068224.1|AF068224 Ixodes ricinus ferritin (Fer) mRNA; complete cds.,0,2,1,27,22.12,UUUUGCUUCAACAGUGAUUGAACGAGC,AY307447.1/2-28 AF068224.1/1-27,1-27,0,26,AF068224.1/1-27 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,13378,AF068225.2,1,sp|AF068225.2|AF068225 Ornithodoros moubata ferritin (Fer) mRNA; complete cds.,0,3,6,32,23.90,UUUUGCUUCAACAGUGUUUGAACGAGC,AF068225.2/6-32,6-32,0,26,AF068225.2/6-32 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,28998,AY120878.1,1,sp|AY120878.1|AY120878 Araneus ventricosus ferritin mRNA; complete cds.,0,4,50,76,26.85,GGUCGCGUCAACAGUGUUUGAUCGAAC,AY120878.1/50-76,50-76,0,26,AY120878.1/50-76 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,32092,AY157150.1,1,sp|AY157150.1|AY157150 Branchiostoma belcheri ferritin mRNA; complete cds.,0,5,1,30,23.20,GUUACUGCUUCUUCAGUGUAAGAACGUGAC,**** NEW HIT #2 ****,,2,0,AY157150.1/1-30 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38251,AY307447.1,1,sp|AY307447.1|AY307447 Boophilus microplus ferritin mRNA; complete cds.,0,6,2,28,22.12,UUUUGCUUCAACAGUGAUUGAACGAGC,AY307447.1/2-28 AF068224.1/1-27,2-28,0,26,AY307447.1/2-28 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,11796,X56778.1,1,sp|X56778.1|LSSFISP L.stagnalis L. mRNA for som fer gene,0,7,18,47,22.75,UGUCUUGCUGCGUCAGUGAACGUACAGACA,**** NEW HIT #3 ****,,2,0,X56778.1/18-47 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,5592,AB098993.1,1,sp|AB098993.1|AB098993 Bos taurus mRNA for similar to ferritin H subunit; partial cds; clone: ORCS11746.,0,8,15,44,34.92,UUUCCUGCUUCAACAGUGCUUGAACGGAAC,BC012314.1/7-36 M73680.1/968-997 X52561.1/968-997 BC021386.1/30-59 M18051.1/206-235 M99692.1/7-36 M60170.1/230-259 AB098993.1/15-44,15-44,0,29,AB098993.1/15-44 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,5663,AB099065.1,1,sp|AB099065.1|AB099065 Bos taurus mRNA for similar to ferritin H subunit; partial cds; clone: ORCS13217.,0,9,31,60,30.51,UUUCCUGCUUCAACAGUGCUUGAACGGNAA,AB099065.1/31-60,31-60,0,29,AB099065.1/31-60 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,5690,AB099093.1,1,sp|AB099093.1|AB099093 Bos taurus mRNA for similar to ferritin L subunit; partial cds; clone: ORCS13934.,0,10,27,56,34.29,UCUCUUGCUUCAACAGUGCUUGGACGGAAC,AB099093.1/27-56,27-56,0,29,AB099093.1/27-56 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7029,AC087834.2,1,sp|AC087834.2|AC087834 Pan troglodytes clone RP43-124I17; complete sequence.,1,11,120809,120783,24.31,UUUAUCGUAAGCAGUGACUUGUGUAAG,**** NEW HIT #4 ****,,2,0,AC087834.2/120809-120783 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7059,AC091381.3,1,sp|AC091381.3|AC091381 Papio cynocephalus anubis clone RP41-468N20; complete sequence.,1,12,51047,51021,24.73,UUUAUCAUAAGCAGUGACUUGUGUAAG,**** NEW HIT #5 ****,,2,0,AC091381.3/51047-51021 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7063,AC091403.3,1,sp|AC091403.3|AC091403 Sus scrofa clone RP44-431F19; complete sequence.,0,13,31333,31359,23.05,AUUAUUGCUAACAGUGUUUAGCAUAAA,**** NEW HIT #6 ****,,2,0,AC091403.3/31333-31359 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7217,AC123963.4,1,sp|AC123963.4|AC123963 Macaca mulatta clone CH250-246J11; complete sequence.,1,14,143593,143567,24.73,UUUAUCAUAAGCAGUGACUUGUGUAAG,**** NEW HIT (duplicate of new hit #5) ****,,2,0,AC123963.4/143593-143567 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,10918,AF086786.1,1,sp|AF086786.1|AF086786 Delphinapterus leucas erythroid-specific 5-aminolevulinic acid synthase (ALS2) mRNA; complete cds.,0,15,2,28,23.78,UCGUUCGUCCUCAGUGCAGGGCAACAG,Z83821.1/18198-18224 AF086786.1/2-28 AF068624.1/10369-10395 AL020991.1/19700-19726 X60364.1/11-37,2-28,0,26,AF086786.1/2-28 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,19196,AF285177.1,1,sp|AF285177.1|AF285177 Canis familiaris ferritin mRNA; complete cds.,0,16,3,32,35.71,GUUCCUGCUUCAACAGUGCUUGGACGGAAC,AF285177.1/3-32,3-32,0,29,AF285177.1/3-32 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,29038,AY112742.1,1,sp|AY112742.1|AY112742 Equus caballus ferritin heavy chain mRNA; complete cds.,0,17,12,41,31.08,AGUCCUGCUUCAACAGUGCUUGAACGGAAC,AY112742.1/12-41,12-41,0,29,AY112742.1/12-41 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,44892,X14578.1,1,sp|X14578.1|OCFERL5 Rabbit mRNA for ferritin light chain subunit 5'end,0,18,31,60,33.82,UGUCUUGCUUCAACAGUGUUUGAACGGAAC,AL645948.10/53380-53409 AL627328.17/145578-145607 AC092480.27/36562-36591 X14578.1/31-60 AC092481.28/127541-127570 BC019840.1/11-40,31-60,0,29,X14578.1/31-60 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,49364,D15071.1,1,sp|D15071.1|SSFE Pig mRNA for ferritin heavy-chain; complete cds.,0,19,13,42,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,13-42,0,29,D15071.1/13-42 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,2792,AB052620.1,1,sp|AB052620.1|AB052620 Mus musculus DDM36 mRNA; complete cds.,1,20,3371,3342,22.40,GGGCUUGCAGCAGCAGUGUCUGCCCGGUUC,**** NEW HIT #8 ****,,2,0,AB052620.1/3371-3342 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,2793,AB052621.1,1,sp|AB052621.1|AB052621 Mus musculus DDM36E mRNA; complete cds.,1,21,3374,3345,22.40,GGGCUUGCAGCAGCAGUGUCUGCCCGGUUC,**** NEW HIT (duplicate of new hit #8) ****,,2,0,AB052621.1/3374-3345 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4920,AC087891.12,1,sp|AC087891.12|AC087891 Mus musculus Strain C57BL6/J Chromosome 10 RP23-440N1; complete sequence.,1,22,79770,79744,23.06,UCCCUUGGUGACAGUGUUCACCAGCAG,**** NEW HIT #10 ****,,2,0,AC087891.12/79770-79744 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4992,AC091763.24,1,sp|AC091763.24|AC091763 Mus musculus chromosome 10 clone rp23-198o2 strain C57BL/6J; complete sequence.,0,23,4617,4643,23.86,UUUAGCUUCGACAGUGUUUUGAGUAAG,**** NEW HIT #11 ****,,2,0,AC091763.24/4617-4643 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5006,AC092480.27,1,sp|AC092480.27|AC092480 Mus musculus chromosome 17 clone rp23-387f2 strain C57BL/6J; complete sequence.,0,24,36562,36591,33.82,UGUCUUGCUUCAACAGUGUUUGAACGGAAC,AL645948.10/53380-53409 AL627328.17/145578-145607 AC092480.27/36562-36591 X14578.1/31-60 AC092481.28/127541-127570 BC019840.1/11-40,36562-36591,0,29,AC092480.27/36562-36591 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5007,AC092481.28,1,sp|AC092481.28|AC092481 Mus musculus chromosome 17 clone rp23-456p8 strain C57BL/6J; complete sequence.,0,25,127541,127570,33.82,UGUCUUGCUUCAACAGUGUUUGAACGGAAC,AL645948.10/53380-53409 AL627328.17/145578-145607 AC092480.27/36562-36591 X14578.1/31-60 AC092481.28/127541-127570 BC019840.1/11-40,127541-127570,0,29,AC092481.28/127541-127570 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5013,AC092855.39,1,sp|AC092855.39|AC092855 Mus musculus chromosome 3 clone rp23-49o17 strain C57BL/6J; complete sequence.,0,26,159766,159793,25.25,UCUUGUUUCAACAGUGUUUGGACUAAAC,AC092855.39/159766-159793,159766-159793,0,27,AC092855.39/159766-159793 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5310,AC108392.17,1,sp|AC108392.17|AC108392 Mus musculus; clone RP23-121B23; complete sequence.,1,27,160456,160427,23.64,UGUCUUGCUUUAACUGUGUUUGAACGGAAC,AC108392.17/160456-160427,160456-160427,0,29,AC108392.17/160456-160427 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5352,AC109831.5,1,sp|AC109831.5|AC109831 Mus musculus chromosome 9 clone RP24-104B17; complete sequence.,1,28,101849,101823,22.72,AGCCCCUGCAACAGUGUUUGCAGGAAG,**** NEW HIT #12 ****,,2,0,AC109831.5/101849-101823 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5359,AC110170.6,1,sp|AC110170.6|AC110170 Mus musculus; clone RP23-301G24; complete sequence.,1,29,81271,81242,35.80,UGUCUUGCUUCAACAGUGUUUGGACAGAAC,AC110170.6/81271-81242,81271-81242,0,29,AC110170.6/81271-81242 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5363,AC110237.7,1,sp|AC110237.7|AC110237 Mus musculus; clone RP23-104B24; complete sequence.,1,30,153032,153006,25.13,UUUUUUUUCAACAGUUUUUGAAAAAAA,**** NEW HIT #13 ****,,2,0,AC110237.7/153032-153006 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5407,AC112161.9,1,sp|AC112161.9|AC112161 Mus Musculus chromosome 9 BAC clone MGS1-117K9 ES cell line; Complete Sequence; complete sequence.,0,31,105605,105634,22.40,GGGCUUGCAGCAGCAGUGUCUGCCCGGUUC,**** NEW HIT (duplicate of new hit #8) ****,,2,0,AC112161.9/105605-105634 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5816,AC121816.3,1,sp|AC121816.3|AC121816 Mus musculus chromosome 3 clone RP23-458H21; complete sequence.,0,32,96141,96167,22.09,UUUUUCCUCUACAGUGUUAGGGAGAAA,**** NEW HIT #15 ****,,2,0,AC121816.3/96141-96167 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5850,AC121858.3,1,sp|AC121858.3|AC121858 Mus musculus chromosome 8 clone RP24-104B23; complete sequence.,0,33,112619,112648,22.35,UUUUUUGCUGCCACAUAGCUGGCAUAAAAG,**** NEW HIT #16 ****,,2,0,AC121858.3/112619-112648 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6192,AC122459.2,1,sp|AC122459.2|AC122459 Mus musculus chromosome 15 clone RP24-273F21; complete sequence.,0,34,90018,90044,22.44,UGUCUUGUCAACAGUGUUUGGAAGGAA,AC122459.2/90018-90044,90018-90044,0,26,AC122459.2/90018-90044 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6303,AC122863.4,1,sp|AC122863.4|AC122863 Mus musculus chromosome 7 clone RP23-142A14; complete sequence.,1,35,16152,16126,22.42,CUUGCCUUCAGCAGUGCCUGGAGAAAU,**** NEW HIT #17 ****,,2,0,AC122863.4/16152-16126 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6451,AC123859.4,1,sp|AC123859.4|AC123859 Mus musculus chromosome 3 clone RP23-346B13; complete sequence.,0,36,49119,49148,30.25,UGUCUUGCUUCAACAGUGUUUGGACGAAAC,AC123859.4/49119-49148,49119-49148,0,29,AC123859.4/49119-49148 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6563,AC124390.4,1,sp|AC124390.4|AC124390 Mus musculus chromosome 12 clone RP24-434C11; complete sequence.,0,37,139592,139621,25.18,AUUCUCGCAGCAUCAGUGCCUGCUUAGAAA,**** NEW HIT #18 ****,,2,0,AC124390.4/139592-139621 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6888,AC125229.3,1,sp|AC125229.3|AC125229 Mus musculus chromosome 5 clone RP23-45P1; complete sequence.,0,38,103775,103804,25.50,GUUUCUGCUUCAACAGUGUUUGAACUGAGC,AC125229.3/103775-103804,103775-103804,0,29,AC125229.3/103775-103804 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,7042,AC126676.3,1,sp|AC126676.3|AC126676 Mus musculus chromosome 7 clone RP23-445H7; complete sequence.,0,39,158436,158462,24.58,UCUUUUGGUAACAGUGUUUACCAGAGC,**** NEW HIT #19 ****,,2,0,AC126676.3/158436-158462 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,7106,AC127282.3,1,sp|AC127282.3|AC127282 Mus musculus chromosome 5 clone RP23-318O24; complete sequence.,0,40,76836,76863,22.51,AUUCUUGUCAACACUGCUUGACCAGAAA,**** NEW HIT #20 ****,,2,0,AC127282.3/76836-76863 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,7312,AC130215.3,1,sp|AC130215.3|AC130215 Mus musculus chromosome 6 clone RP23-286E1; complete sequence.,0,41,6453,6482,23.68,CGUCUUGCUUCAACAGUGUUUCUACAGAAC,AC130215.3/6453-6482,6453-6482,0,29,AC130215.3/6453-6482 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,14162,AF171078.1,1,sp|AF171078.1|AF171078 Mus musculus erythroid-specific 5-aminolevulinate synthase; promoter region.,0,42,1416,1442,23.46,UGGUUCGUCCUCAGUGCAGGGCAACAG,M63244.1/13-39 AL808140.5/158768-158794 AF171078.1/1416-1442 AF186775.1/17-43 M15268.1/1-27,1416-1442,0,26,AF171078.1/1416-1442 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,14342,AF176694.1,1,sp|AF176694.1|AF176694 Mus musculus neighbor of Punc e11 protein (Nope) mRNA; complete cds.,1,43,3322,3293,22.40,GGGCUUGCAGCAGCAGUGUCUGCCCGGUUC,**** NEW HIT (duplicate of new hit #8) ****,,2,0,AF176694.1/3322-3293 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,14641,AF184111.1,1,sp|AF184111.1|AF184111 Mus musculus KID1 (Kid1) mRNA; complete cds.,0,44,2247,2273,22.80,UCUCUCUGCAGCAGUGUGUGCUAGAAA,**** NEW HIT #22 ****,,2,0,AF184111.1/2247-2273 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,18978,AF321235.1,1,sp|AF321235.1|AF321235 Mus musculus chromosome 7-E3 B4 olfactory receptor gene; partial cds; and B5 olfactory receptor and B6 olfactory receptor genes,0,45,27339,27366,22.08,AUUCUCUUUAACAAUGUUUGAACAGAAU,**** NEW HIT #23 ****,,2,0,AF321235.1/27339-27366 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,23742,AK122535.1,1,sp|AK122535.1|AK122535 Mus musculus mRNA for mKIAA1628 protein.,1,46,3450,3421,22.40,GGGCUUGCAGCAGCAGUGUCUGCCCGGUUC,**** NEW HIT (duplicate of new hit #8) ****,,2,0,AK122535.1/3450-3421 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24071,AL596185.12,1,sp|AL596185.12|AL596185 Mouse DNA sequence from clone RP23-172M21 on chromosome 11,1,47,105145,105116,22.08,UCCUCUGCUUCCACAGUGCUGGGACUGAAG,**** NEW HIT #25 ****,,2,0,AL596185.12/105145-105116 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24152,AL604062.15,1,sp|AL604062.15|AL604062 Mouse DNA sequence from clone RP23-104B6 on chromosome 11,1,48,181653,181624,26.70,UGUCUUACUUCAACAGUGUUUGGACAGGAC,AL604062.15/181653-181624,181653-181624,0,29,AL604062.15/181653-181624 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24287,AL607145.28,1,sp|AL607145.28|AL607145 Mouse DNA sequence from clone RP23-230I5 on chromosome 4,0,49,50364,50390,22.12,UGUCUCUUUAAAAGUGCUUAGAGGAAA,**** NEW HIT #26 ****,,2,0,AL607145.28/50364-50390 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24415,AL627328.17,1,sp|AL627328.17|AL627328 Mouse DNA sequence from clone RP23-299J22 on chromosome 4,0,50,145578,145607,33.82,UGUCUUGCUUCAACAGUGUUUGAACGGAAC,AL645948.10/53380-53409 AL627328.17/145578-145607 AC092480.27/36562-36591 X14578.1/31-60 AC092481.28/127541-127570 BC019840.1/11-40,145578-145607,0,29,AL627328.17/145578-145607 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24472,AL645545.8,1,sp|AL645545.8|AL645545 Mouse DNA sequence from clone RP23-203J4 on chromosome X,1,51,151409,151380,26.34,UUUCCUGCUUCAACAAUGCUUGAACUGAAC,AL645545.8/151409-151380,151409-151380,0,29,AL645545.8/151409-151380 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24621,AL645948.10,1,sp|AL645948.10|AL645948 Mouse DNA sequence from clone RP23-298M7 on chromosome 11,0,52,53380,53409,33.82,UGUCUUGCUUCAACAGUGUUUGAACGGAAC,AL645948.10/53380-53409 AL627328.17/145578-145607 AC092480.27/36562-36591 X14578.1/31-60 AC092481.28/127541-127570 BC019840.1/11-40,53380-53409,0,29,AL645948.10/53380-53409 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24624,AL645962.22,1,sp|AL645962.22|AL645962 Mouse DNA sequence from clone RP23-217L7 on chromosome 11,0,53,56867,56893,22.80,UCUCUCUGCAGCAGUGUGUGCUAGAAA,**** NEW HIT (duplicate of new hit #22) ****,,2,0,AL645962.22/56867-56893 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24782,AL663066.12,1,sp|AL663066.12|AL663066 Mouse DNA sequence from clone RP23-416K12 on chromosome 11,1,54,45477,45451,24.66,UUUUUUUUCAGCAGUGACUGAAACAAG,**** NEW HIT #28 ****,,2,0,AL663066.12/45477-45451 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24942,AL670169.9,1,sp|AL670169.9|AL670169 Mouse DNA sequence from clone RP23-198C2 on chromosome X,1,55,145075,145046,30.29,UAUCUUGCUUCAACAGUGUUUGGAUGGAAC,AL670169.9/145075-145046,145075-145046,0,29,AL670169.9/145075-145046 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25138,AL671993.7,1,sp|AL671993.7|AL671993 Mouse DNA sequence from clone RP23-428E5 on chromosome X,1,56,46182,46153,28.20,UAUCUUGCUUCAAAAGUGUUUGGACAGAAC,AL671993.7/46182-46153,46182-46153,0,29,AL671993.7/46182-46153 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25228,AL672140.7,1,sp|AL672140.7|AL672140 Mouse DNA sequence from clone RP23-13O17 on chromosome 11,1,57,46822,46796,23.59,UUUUUUUUAAACAGUUUUUUGAGAAAG,**** NEW HIT #29 ****,,2,0,AL672140.7/46822-46796 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25522,AL714024.31,1,sp|AL714024.31|AL714024 Mouse DNA sequence from clone RP23-102H7 on chromosome 5,1,58,182442,182415,23.20,UCUCUUGUUCAGCAGUGUAUGGAGGAAA,**** NEW HIT #30 ****,,2,0,AL714024.31/182442-182415 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25944,AL772245.7,1,sp|AL772245.7|AL772245 Mouse DNA sequence from clone RP23-332K6 on chromosome 4,0,59,4298,4324,22.14,UUGUUUUUCAUCAGUGCCUGAAAACAA,**** NEW HIT #31 ****,,2,0,AL772245.7/4298-4324 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26368,AL808140.5,1,sp|AL808140.5|AL808140 Mouse DNA sequence from clone RP23-147K5 on chromosome X,0,60,158768,158794,23.46,UGGUUCGUCCUCAGUGCAGGGCAACAG,M63244.1/13-39 AL808140.5/158768-158794 AF171078.1/1416-1442 AF186775.1/17-43 M15268.1/1-27,158768-158794,0,26,AL808140.5/158768-158794 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26754,AL845291.5,1,sp|AL845291.5|AL845291 Mouse DNA sequence from clone RP23-1O11 on chromosome 2,1,61,82239,82210,29.14,UGUCUUGUUUCAACAGUGUUUGGACAAAAC,AL845291.5/82239-82210,82239-82210,0,29,AL845291.5/82239-82210 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,27073,AL928893.10,1,sp|AL928893.10|AL928893 Mouse DNA sequence from clone RP23-55I14 on chromosome 2,0,62,80521,80547,22.25,UUGCUUUUAAAUAGUGUUUUGAGGCAG,**** NEW HIT #32 ****,,2,0,AL928893.10/80521-80547 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,27536,AL954855.8,1,sp|AL954855.8|AL954855 Mouse DNA sequence from clone RP23-211L10 on chromosome X,1,63,4754,4725,23.31,UGCCUUGCUUCAAUAGUGUUUGAACGGAAC,AL954855.8/4754-4725,4754-4725,0,29,AL954855.8/4754-4725 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,38178,BC012314.1,1,sp|BC012314.1|BC012314 Mus musculus ferritin heavy chain; mRNA (cDNA clone MGC:19422 IMAGE:3488821); complete cds.,0,64,7,36,34.92,UUUCCUGCUUCAACAGUGCUUGAACGGAAC,BC012314.1/7-36 M73680.1/968-997 X52561.1/968-997 BC021386.1/30-59 M18051.1/206-235 M99692.1/7-36 M60170.1/230-259 AB098993.1/15-44,7-36,0,29,BC012314.1/7-36 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,39861,BC019840.1,1,sp|BC019840.1|BC019840 Mus musculus ferritin light chain 1; mRNA (cDNA clone MGC:29974 IMAGE:5123770); complete cds.,0,65,11,40,33.82,UGUCUUGCUUCAACAGUGUUUGAACGGAAC,AL645948.10/53380-53409 AL627328.17/145578-145607 AC092480.27/36562-36591 X14578.1/31-60 AC092481.28/127541-127570 BC019840.1/11-40,11-40,0,29,BC019840.1/11-40 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,40163,BC021386.1,1,sp|BC021386.1|BC021386 Mus musculus; RIKEN cDNA 8430406I07 gene; clone MGC:29141 IMAGE:5064253; mRNA; complete cds.,0,66,30,59,34.92,UUUCCUGCUUCAACAGUGCUUGAACGGAAC,BC012314.1/7-36 M73680.1/968-997 X52561.1/968-997 BC021386.1/30-59 M18051.1/206-235 M99692.1/7-36 M60170.1/230-259 AB098993.1/15-44,30-59,0,29,BC021386.1/30-59 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,48859,BC050843.1,1,sp|BC050843.1|BC050843 Mus musculus zinc finger protein 354A; mRNA (cDNA clone MGC:59375 IMAGE:6506256); complete cds.,0,67,2285,2311,22.80,UCUCUCUGCAGCAGUGUGUGCUAGAAA,**** NEW HIT (duplicate of new hit #22) ****,,2,0,BC050843.1/2285-2311 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,50396,BC054522.1,1,sp|BC054522.1|BC054522 Mus musculus transferrin receptor; mRNA (cDNA clone MGC:62189 IMAGE:6406097); complete cds.,0,68,3166,3192,23.22,UUUAUCAGUGACAGAGUUCACUAUAAA,AC024937.21/105699-105673 AF187320.1/31063-31089 BC001188.1/3225-3251 BX537966.1/3039-3065 BC054522.1/3166-3192 AJ426432.1/1154-1180 M58040.1/2819-2845 X01060.1/3432-3458,3604-3630 3225-3251 3669-3695 3166-3192 3716-3742,0,26,BC054522.1/3166-3192 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,50396,BC054522.1,1,sp|BC054522.1|BC054522 Mus musculus transferrin receptor; mRNA (cDNA clone MGC:62189 IMAGE:6406097); complete cds.,0,69,3225,3251,28.25,AUUAUCGGAAGCAGUGCCUUCCAUAAU,M58040.1/2869-2895 X01060.1/3482-3508 AF187320.1/31113-31139 AC024937.21/105649-105623 AJ426432.1/1214-1240 BC054522.1/3225-3251 BC001188.1/3275-3301 BX537966.1/3089-3115,3604-3630 3225-3251 3669-3695 3166-3192 3716-3742,0,26,BC054522.1/3225-3251 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,50396,BC054522.1,1,sp|BC054522.1|BC054522 Mus musculus transferrin receptor; mRNA (cDNA clone MGC:62189 IMAGE:6406097); complete cds.,0,70,3604,3630,27.71,AUUAUCGGGAGCAGUGUCUUCCAUAAU,BX537966.1/3491-3517 AC024937.21/105245-105219 BC054522.1/3604-3630 X01060.1/3885-3911 M58040.1/3244-3270 BC001188.1/3679-3705 AJ426432.1/1593-1619 AF187320.1/31517-31543,3604-3630 3225-3251 3669-3695 3166-3192 3716-3742,0,26,BC054522.1/3604-3630 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,50396,BC054522.1,1,sp|BC054522.1|BC054522 Mus musculus transferrin receptor; mRNA (cDNA clone MGC:62189 IMAGE:6406097); complete cds.,0,71,3669,3695,26.17,UAUAUCGGAGACAGUGAUCUCCAUAUG,AJ426432.1/1658-1684 BC054522.1/3669-3695,3604-3630 3225-3251 3669-3695 3166-3192 3716-3742,0,26,BC054522.1/3669-3695 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,50396,BC054522.1,1,sp|BC054522.1|BC054522 Mus musculus transferrin receptor; mRNA (cDNA clone MGC:62189 IMAGE:6406097); complete cds.,0,72,3716,3742,30.18,AUUAUCGGGAACAGUGUUUCCCAUAAU,M58040.1/3356-3382 BC001188.1/3791-3817 AC024937.21/105133-105107 AF187320.1/31629-31655 X01060.1/3997-4023 AJ426432.1/1705-1731 BC054522.1/3716-3742 BX537966.1/3603-3629,3604-3630 3225-3251 3669-3695 3166-3192 3716-3742,0,26,BC054522.1/3716-3742 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,51360,BX255946.6,1,sp|BX255946.6|BX255946 Mouse DNA sequence from clone RP23-82A14 on chromosome 4,1,73,23507,23478,29.00,UGUUCUGCUUCAACAGUGUUUGGACUGAAC,BX255946.6/23507-23478,23507-23478,0,29,BX255946.6/23507-23478 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,56136,M15268.1,1,sp|M15268.1|MMALA Mouse 5-aminolevulinic acid synthase mRNA; 3' end.,0,74,1,27,23.46,UGGUUCGUCCUCAGUGCAGGGCAACAG,M63244.1/13-39 AL808140.5/158768-158794 AF171078.1/1416-1442 AF186775.1/17-43 M15268.1/1-27,1-27,0,26,M15268.1/1-27 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,56138,M63244.1,1,sp|M63244.1|MMALASE Mus musculus amino levulinate synthase mRNA; complete cds.,0,75,13,39,23.46,UGGUUCGUCCUCAGUGCAGGGCAACAG,M63244.1/13-39 AL808140.5/158768-158794 AF171078.1/1416-1442 AF186775.1/17-43 M15268.1/1-27,13-39,0,26,M63244.1/13-39 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,59189,M60170.1,1,sp|M60170.1|MMFERHC Mouse ferritin heavy chain gene; complete cds.,0,76,230,259,34.92,UUUCCUGCUUCAACAGUGCUUGAACGGAAC,BC012314.1/7-36 M73680.1/968-997 X52561.1/968-997 BC021386.1/30-59 M18051.1/206-235 M99692.1/7-36 M60170.1/230-259 AB098993.1/15-44,230-259,0,29,M60170.1/230-259 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,59190,X52561.1,1,sp|X52561.1|MMFERHG Mouse gene for ferritin H subunit,0,77,968,997,34.92,UUUCCUGCUUCAACAGUGCUUGAACGGAAC,BC012314.1/7-36 M73680.1/968-997 X52561.1/968-997 BC021386.1/30-59 M18051.1/206-235 M99692.1/7-36 M60170.1/230-259 AB098993.1/15-44,968-997,0,29,X52561.1/968-997 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,59192,L39879.1,1,sp|L39879.1|MMFERLSUB Mus musculus ferritin L-subunit gene exons 1-4; complete cds.,0,78,1190,1219,30.99,GUACUUGCUUCAACAGUGUUUGAACGGAAC,L39879.1/1190-1219,1190-1219,0,29,L39879.1/1190-1219 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,59195,M73680.1,1,sp|M73680.1|MMFERRH Mus musculus (clone pMHFY2) ferritin H gene; promoter region.,0,79,968,997,34.92,UUUCCUGCUUCAACAGUGCUUGAACGGAAC,BC012314.1/7-36 M73680.1/968-997 X52561.1/968-997 BC021386.1/30-59 M18051.1/206-235 M99692.1/7-36 M60170.1/230-259 AB098993.1/15-44,968-997,0,29,M73680.1/968-997 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,65066,L77247.1,1,sp|L77247.1|MMK1ZF Mus musculus zinc finger protein (kid-1) gene; complete cds.,0,80,2149,2175,22.80,UCUCUCUGCAGCAGUGUGUGCUAGAAA,**** NEW HIT (duplicate of new hit #22) ****,,2,0,L77247.1/2149-2175 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,72498,AJ276505.2,1,sp|AJ276505.2|MMU276505 Mus musculus genomic fragment; 281000 bp; chromosome 7,1,81,120810,120781,29.14,UGUCUUGCUUCAACCGUGUUUGGACGGAAC,AJ276505.2/120810-120781,120810-120781,0,29,AJ276505.2/120810-120781 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,74127,AJ426432.1,1,sp|AJ426432.1|MMU426432 Mus musculus partial mRNA for transferrin receptor 1 (TFR1 gene),0,82,1154,1180,23.22,UUUAUCAGUGACAGAGUUCACUAUAAA,AC024937.21/105699-105673 AF187320.1/31063-31089 BC001188.1/3225-3251 BX537966.1/3039-3065 BC054522.1/3166-3192 AJ426432.1/1154-1180 M58040.1/2819-2845 X01060.1/3432-3458,1214-1240 1658-1684 1705-1731 1154-1180 1593-1619,0,26,AJ426432.1/1154-1180 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,74127,AJ426432.1,1,sp|AJ426432.1|MMU426432 Mus musculus partial mRNA for transferrin receptor 1 (TFR1 gene),0,83,1214,1240,28.25,AUUAUCGGAAGCAGUGCCUUCCAUAAU,M58040.1/2869-2895 X01060.1/3482-3508 AF187320.1/31113-31139 AC024937.21/105649-105623 AJ426432.1/1214-1240 BC054522.1/3225-3251 BC001188.1/3275-3301 BX537966.1/3089-3115,1214-1240 1658-1684 1705-1731 1154-1180 1593-1619,0,26,AJ426432.1/1214-1240 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,74127,AJ426432.1,1,sp|AJ426432.1|MMU426432 Mus musculus partial mRNA for transferrin receptor 1 (TFR1 gene),0,84,1593,1619,27.71,AUUAUCGGGAGCAGUGUCUUCCAUAAU,BX537966.1/3491-3517 AC024937.21/105245-105219 BC054522.1/3604-3630 X01060.1/3885-3911 M58040.1/3244-3270 BC001188.1/3679-3705 AJ426432.1/1593-1619 AF187320.1/31517-31543,1214-1240 1658-1684 1705-1731 1154-1180 1593-1619,0,26,AJ426432.1/1593-1619 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,74127,AJ426432.1,1,sp|AJ426432.1|MMU426432 Mus musculus partial mRNA for transferrin receptor 1 (TFR1 gene),0,85,1658,1684,26.17,UAUAUCGGAGACAGUGAUCUCCAUAUG,AJ426432.1/1658-1684 BC054522.1/3669-3695,1214-1240 1658-1684 1705-1731 1154-1180 1593-1619,0,26,AJ426432.1/1658-1684 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,74127,AJ426432.1,1,sp|AJ426432.1|MMU426432 Mus musculus partial mRNA for transferrin receptor 1 (TFR1 gene),0,86,1705,1731,30.18,AUUAUCGGGAACAGUGUUUCCCAUAAU,M58040.1/3356-3382 BC001188.1/3791-3817 AC024937.21/105133-105107 AF187320.1/31629-31655 X01060.1/3997-4023 AJ426432.1/1705-1731 BC054522.1/3716-3742 BX537966.1/3603-3629,1214-1240 1658-1684 1705-1731 1154-1180 1593-1619,0,26,AJ426432.1/1705-1731 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,2024,AB020745.1,1,sp|AB020745.1|AB020745 Arabidopsis thaliana genomic DNA; chromosome 5; P1 clone:MJE7.,0,87,5205,5231,22.29,UUUACUAUAAACAGUGCUUUGGAUAAG,**** NEW HIT #35 ****,,2,0,AB020745.1/5205-5231 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,6901,AB081316.2,1,sp|AB081316.2|AB081316 Oryza sativa (japonica cultivar-group) retrotransposon Karma DNA; complete sequence.,0,88,4022,4048,22.58,GCUUUCUUCAACAAUGCUUGGAACAAC,**** NEW HIT #36 ****,,2,0,AB081316.2/4022-4048 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,8827,AC007019.5,1,sp|AC007019.5|AC007019 Arabidopsis thaliana chromosome 2 clone F7D8 map mi238; complete sequence.,1,89,48617,48591,22.09,ACUCUUUGCCACAGUGCUUGCAUGAAU,**** NEW HIT #37 ****,,2,0,AC007019.5/48617-48591 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9192,AC027034.10,1,sp|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7A10 genomic sequence; complete sequence.,0,90,85343,85372,24.19,GUUUUUGGUUUCACAGUGUUGAGAAAAAAC,**** NEW HIT #38 ****,,2,0,AC027034.10/85343-85372 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,91833,AK106949.1,1,sp|AK106949.1|AK106949 Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E02; full insert sequence.,0,91,22,51,36.20,GUUCUUGCUUCAACAGUGUUUGGACGGAAC,AK106949.1/22-51,22-51,0,29,AK106949.1/22-51 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,99125,AP002971.2,1,sp|AP002971.2|AP002971 Oryza sativa (japonica cultivar-group) genomic DNA; chromosome 1; PAC clone:P0537A05.,0,92,106140,106169,22.29,GCUUUUGCUGAAACAUUGUUUUCAUAUAAC,**** NEW HIT #39 ****,,2,0,AP002971.2/106140-106169 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,152910,AY136326.1,1,sp|AY136326.1|AY136326 Arabidopsis thaliana putative protein (At5g48390) mRNA; complete cds.,0,93,522,548,22.29,UUUACUAUAAACAGUGCUUUGGAUAAG,**** NEW HIT (duplicate of new hit #35) ****,,2,0,AY136326.1/522-548 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,172420,BT000104.1,1,sp|BT000104.1|BT000104 Arabidopsis thaliana putative protein (At5g48390) mRNA; complete cds.,0,94,316,342,22.29,UUUACUAUAAACAGUGCUUUGGAUAAG,**** NEW HIT (duplicate of new hit #35) ****,,2,0,BT000104.1/316-342 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,181796,AL731761.2,1,sp|AL731761.2|CNS07YPV Oryza sativa chromosome 12; . BAC OJ1119_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of ,1,95,46431,46402,23.61,UGUAUUGUGGUAACAGUGCUUACUUAUAUC,**** NEW HIT #42 ****,,2,0,AL731761.2/46431-46402 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198736,AL731582.2,1,sp|AL731582.2|OSJN00232 Oryza sativa genomic DNA; chromosome 4; BAC clone: OSJNBa0022H21.,0,96,151654,151680,22.08,AAUUUUGGCAACUGUGUUUGCCAAAAU,**** NEW HIT #43 ****,,2,0,AL731582.2/151654-151680 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21108,AE006348.1,1,sp|AE006348.1|AE006348 Lactococcus lactis subsp. lactis IL1403 section 110 of 218 of the complete genome.,1,97,2642,2616,22.25,UUUGUCAGCAACAGUACUUGCUAUAAC,**** NEW HIT #44 ****,,2,0,AE006348.1/2642-2616 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,26032,AE011324.1,1,sp|AE011324.1|AE011324 Leptospira interrogans serovar lai str. 56601 chromosome I; section 133 of 397 of the complete sequence.,1,98,220,192,22.34,UUUAUUCUACAACAGUGUUUGAACUUAAA,AE011324.1/220-192,220-192,0,28,AE011324.1/220-192 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,24414,AF372655.1,1,sp|AF372655.1|AF372655 Rhizobium leguminosarum bv. trifolii CpsF (cpsF) gene; partial cds; and putative succinoglycan biosynthesis transport protein; ,1,99,11016,10990,22.06,CUUCUCGUCAGCAGCGCCUGACGGAAA,**** NEW HIT #45 ****,,2,0,AF372655.1/11016-10990 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,1128,AB073371.1,1,sp|AB073371.1|AB073371 Cavia porcellus mRNA for ferritin heavy chain; complete cds.,0,100,5,34,32.12,UCUCCUGCUUCAACAGUGCUUGGACGGAGC,AB073371.1/5-34,5-34,0,29,AB073371.1/5-34 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,1474,AC112532.5,1,sp|AC112532.5|AC112532 Rattus norvegicus 9 BAC CH230-20N15 (Children's Hospital Oakland Research Institute) complete sequence.,1,101,89341,89312,30.53,UGUCUUGCUUCAACAGUGUUUGGAAGGAAC,AC112532.5/89341-89312,89341-89312,0,29,AC112532.5/89341-89312 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,4357,AF186775.1,1,sp|AF186775.1|AF186775 Rattus norvegicus 5-aminolevulinate synthase (ALS2) mRNA; partial cds.,0,102,17,43,23.46,UGGUUCGUCCUCAGUGCAGGGCAACAG,M63244.1/13-39 AL808140.5/158768-158794 AF171078.1/1416-1442 AF186775.1/17-43 M15268.1/1-27,17-43,0,26,AF186775.1/17-43 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,10381,M99692.1,1,sp|M99692.1|CGFERR Hamster iron binding protein (ferretin) mRNA.,0,103,7,36,34.92,UUUCCUGCUUCAACAGUGCUUGAACGGAAC,BC012314.1/7-36 M73680.1/968-997 X52561.1/968-997 BC021386.1/30-59 M18051.1/206-235 M99692.1/7-36 M60170.1/230-259 AB098993.1/15-44,7-36,0,29,M99692.1/7-36 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,15983,M18051.1,1,sp|M18051.1|RNFERA1 Rat ferritin heavy subunit gene; partial exon X.,0,104,206,235,34.92,UUUCCUGCUUCAACAGUGCUUGAACGGAAC,BC012314.1/7-36 M73680.1/968-997 X52561.1/968-997 BC021386.1/30-59 M18051.1/206-235 M99692.1/7-36 M60170.1/230-259 AB098993.1/15-44,206-235,0,29,M18051.1/206-235 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,15988,J02741.1,1,sp|J02741.1|RNFERL1 Rat ferritin light chain gene; complete cds.,0,105,400,429,32.32,UAUCUUGCUUCAACAGUGUUUGGACGGAAC,M18812.1/20-49 J02741.1/400-429,400-429,0,29,J02741.1/400-429 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,15991,M18812.1,1,sp|M18812.1|RNFERUTR Rat ferritin light subunit 5' untranslated region (UTR).,0,106,20,49,32.32,UAUCUUGCUUCAACAGUGUUUGGACGGAAC,M18812.1/20-49 J02741.1/400-429,20-49,0,29,M18812.1/20-49 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20681,M58040.1,1,sp|M58040.1|RNTRFR Rat transferrin receptor mRNA; 3' end.,0,107,2819,2845,23.22,UUUAUCAGUGACAGAGUUCACUAUAAA,AC024937.21/105699-105673 AF187320.1/31063-31089 BC001188.1/3225-3251 BX537966.1/3039-3065 BC054522.1/3166-3192 AJ426432.1/1154-1180 M58040.1/2819-2845 X01060.1/3432-3458,3356-3382 2869-2895 3309-3335 3244-3270 2819-2845,0,26,M58040.1/2819-2845 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20681,M58040.1,1,sp|M58040.1|RNTRFR Rat transferrin receptor mRNA; 3' end.,0,108,2869,2895,28.25,AUUAUCGGAAGCAGUGCCUUCCAUAAU,M58040.1/2869-2895 X01060.1/3482-3508 AF187320.1/31113-31139 AC024937.21/105649-105623 AJ426432.1/1214-1240 BC054522.1/3225-3251 BC001188.1/3275-3301 BX537966.1/3089-3115,3356-3382 2869-2895 3309-3335 3244-3270 2819-2845,0,26,M58040.1/2869-2895 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20681,M58040.1,1,sp|M58040.1|RNTRFR Rat transferrin receptor mRNA; 3' end.,0,109,3244,3270,27.71,AUUAUCGGGAGCAGUGUCUUCCAUAAU,BX537966.1/3491-3517 AC024937.21/105245-105219 BC054522.1/3604-3630 X01060.1/3885-3911 M58040.1/3244-3270 BC001188.1/3679-3705 AJ426432.1/1593-1619 AF187320.1/31517-31543,3356-3382 2869-2895 3309-3335 3244-3270 2819-2845,0,26,M58040.1/3244-3270 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20681,M58040.1,1,sp|M58040.1|RNTRFR Rat transferrin receptor mRNA; 3' end.,0,110,3309,3335,22.33,UAUAUCGGAGACAGUGACCUCCAUAUG,M58040.1/3309-3335,3356-3382 2869-2895 3309-3335 3244-3270 2819-2845,0,26,M58040.1/3309-3335 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20681,M58040.1,1,sp|M58040.1|RNTRFR Rat transferrin receptor mRNA; 3' end.,0,111,3356,3382,30.18,AUUAUCGGGAACAGUGUUUCCCAUAAU,M58040.1/3356-3382 BC001188.1/3791-3817 AC024937.21/105133-105107 AF187320.1/31629-31655 X01060.1/3997-4023 AJ426432.1/1705-1731 BC054522.1/3716-3742 BX537966.1/3603-3629,3356-3382 2869-2895 3309-3335 3244-3270 2819-2845,0,26,M58040.1/3356-3382 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,49892,AF227196.1,1,sp|AF227196.1|AF227196 Gill-associated virus ORF1a polyprotein (ORF1a) gene; complete cds; and ORF1ab replicase polyprotein (ORF1b) gene; partial cds.,1,112,7211,7185,22.61,GUUGUUUGGGACAGUGAUCUCAAGAAC,**** NEW HIT #46 ****,,2,0,AF227196.1/7211-7185 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,14314,AF266195.1,1,sp|AF266195.1|AF266195 Gillichthys mirabilis ferritin middle subunit mRNA; complete cds.,0,113,14,43,35.25,AUUCUUGCUUCAACAGUGUUUGAACGGAAU,AF266195.1/14-43,14-43,0,29,AF266195.1/14-43 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,15515,AF292032.1,1,sp|AF292032.1|AF292032 Danio rerio HER-7 protein (her-7) and HER-1 protein (her-1) genes; complete cds.,1,114,15970,15944,23.26,AUUGUUUGCAACAGUGCAUGCAACAAU,**** NEW HIT #47 ****,,2,0,AF292032.1/15970-15944 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,15689,AF295373.1,1,sp|AF295373.1|AF295373 Danio rerio ferritin heavy chain (fth1) mRNA; complete cds.,0,115,6,35,30.42,UUACCUGCUUCAACAGUGCUUGAACGGCAA,AF338763.1/11-40 AF295373.1/6-35 AY260753.1/2-31 BC045278.1/39-68,6-35,0,29,AF295373.1/6-35 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,17173,AF338763.1,1,sp|AF338763.1|AF338763 Oncorhynchus nerka ferritin-H subunit mRNA; complete cds.,0,116,11,40,30.42,UUACCUGCUUCAACAGUGCUUGAACGGCAA,AF338763.1/11-40 AF295373.1/6-35 AY260753.1/2-31 BC045278.1/39-68,11-40,0,29,AF338763.1/11-40 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,23037,AF538970.1,1,sp|AF538970.1|AF538970 Xenopus laevis ferritin heavy chain mRNA; complete cds.,0,117,25,54,33.78,GUUCCUGCUUCAACAGUGAUUGAACGGAAC,BC044685.1/27-56 AF538970.1/25-54,25-54,0,29,AF538970.1/25-54 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,23038,AF538971.1,1,sp|AF538971.1|AF538971 Xenopus laevis ferritin light chain mRNA; complete cds.,0,118,13,42,34.93,GUUCUUGCUUCAACAGUGCUUGAACGGAAC,AF538971.1/13-42 BC046680.1/8-37,13-42,0,29,AF538971.1/13-42 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,24004,AL807827.11,1,sp|AL807827.11|AL807827 Zebrafish DNA sequence from clone CH211-220J6,1,119,47635,47609,22.76,GGUUUUAUCAACAGUGAUUGAUGAAUC,AL807827.11/47635-47609,47635-47609,0,26,AL807827.11/47635-47609 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,24554,AL953915.4,1,sp|AL953915.4|AL953915 Zebrafish DNA sequence from clone CH211-210F6,0,120,31746,31772,24.21,AUUAUUUUGCACAGUGCUGUGAAUAAA,**** NEW HIT #48 ****,,2,0,AL953915.4/31746-31772 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,30635,AY260753.1,1,sp|AY260753.1|AY260753 Oreochromis mossambicus ferritin heavy subunit mRNA; partial cds.,0,121,2,31,30.42,UUACCUGCUUCAACAGUGCUUGAACGGCAA,AF338763.1/11-40 AF295373.1/6-35 AY260753.1/2-31 BC045278.1/39-68,2-31,0,29,AY260753.1/2-31 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,32817,BC044685.1,1,sp|BC044685.1|BC044685 Xenopus laevis; clone MGC:53349 IMAGE:5571031; mRNA; complete cds.,0,122,27,56,33.78,GUUCCUGCUUCAACAGUGAUUGAACGGAAC,BC044685.1/27-56 AF538970.1/25-54,27-56,0,29,BC044685.1/27-56 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,32857,BC044961.1,1,sp|BC044961.1|BC044961 Xenopus laevis; clone MGC:52598 IMAGE:5543148; mRNA; complete cds.,0,123,14,43,35.49,GUUCUUGCUUCAACAGUGUUUGAACGGAAC,S64727.1/502-531 X51395.1/167-196 BC044961.1/14-43 M12120.1/24-53 M55010.1/7-36 M15655.1/24-53,14-43,0,29,BC044961.1/14-43 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,33071,BC045278.1,1,sp|BC045278.1|BC045278 Danio rerio ferritin; heavy polypeptide 1; mRNA (cDNA clone MGC:55220 IMAGE:3815619); complete cds.,0,124,39,68,30.42,UUACCUGCUUCAACAGUGCUUGAACGGCAA,AF338763.1/11-40 AF295373.1/6-35 AY260753.1/2-31 BC045278.1/39-68,39-68,0,29,BC045278.1/39-68 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,33632,BC046680.1,1,sp|BC046680.1|BC046680 Xenopus laevis; clone MGC:53066 IMAGE:5541973; mRNA; complete cds.,0,125,8,37,34.93,GUUCUUGCUUCAACAGUGCUUGAACGGAAC,AF538971.1/13-42 BC046680.1/8-37,8-37,0,29,BC046680.1/8-37 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,36387,BX004964.9,1,sp|BX004964.9|BX004964 Zebrafish DNA sequence from clone DKEY-7I4,1,126,55973,55947,22.60,UCUCUCGGAAACAGUGUCUUACAGAAC,**** NEW HIT #49 ****,,2,0,BX004964.9/55973-55947 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,36634,BX294670.6,1,sp|BX294670.6|BX294670 Zebrafish DNA sequence from clone CH211-154O6 in linkage group 16,0,127,66132,66161,25.47,UGUAUCUCGACAACAGUGUUUGUCCAUAUA,**** NEW HIT #50 ****,,2,0,BX294670.6/66132-66161 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,40732,X13753.1,1,sp|X13753.1|GGCTR3 Chicken mRNA for transferrin receptor 3'-noncoding region,0,128,830,856,23.22,UUUAUCAGUGACAGCGUUCACUAUAAA,X13753.1/830-856,1481-1507 1371-1397 830-856 1434-1460,0,26,X13753.1/830-856 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,40732,X13753.1,1,sp|X13753.1|GGCTR3 Chicken mRNA for transferrin receptor 3'-noncoding region,0,129,1371,1397,24.76,AUUAUCGGGGGCAGUGUCUUCCAUAAU,X13753.1/1371-1397,1481-1507 1371-1397 830-856 1434-1460,0,26,X13753.1/1371-1397 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,40732,X13753.1,1,sp|X13753.1|GGCTR3 Chicken mRNA for transferrin receptor 3'-noncoding region,0,130,1434,1460,23.80,UAUAUCGGAGGCAGUGACCUCCAUAUG,X13753.1/1434-1460,1481-1507 1371-1397 830-856 1434-1460,0,26,X13753.1/1434-1460 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,40732,X13753.1,1,sp|X13753.1|GGCTR3 Chicken mRNA for transferrin receptor 3'-noncoding region,0,131,1481,1507,27.23,AUUAUCGGGGACAGUGUUUCCCAUAAU,X13753.1/1481-1507,1481-1507 1371-1397 830-856 1434-1460,0,26,X13753.1/1481-1507 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,40919,M16343.1,1,sp|M16343.1|GGFERH Chicken ferritin H-subunit gene; complete cds.,0,132,1306,1335,32.06,GUUCCUGCGUCAACAGUGCUUGGACGGAAC,M16343.1/1306-1335 Y14698.1/32-61,1306-1335,0,29,M16343.1/1306-1335 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,42213,Y14698.1,1,sp|Y14698.1|GGRNAFHCP Gallus gallus mRNA for ferritin H chain protein,0,133,32,61,32.06,GUUCCUGCGUCAACAGUGCUUGGACGGAAC,M16343.1/1306-1335 Y14698.1/32-61,32-61,0,29,Y14698.1/32-61 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,45211,D86625.1,1,sp|D86625.1|OMD625 Oncorhynchus mykiss mRNA for ferritin H-1; complete cds.,0,134,6,35,31.33,GUUCUUGUUUCAACAGUGAUUGAACGGAAC,D86625.1/6-35,6-35,0,29,D86625.1/6-35 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,46664,M15655.1,1,sp|M15655.1|RCFERH Frog (Rana catesbeiana) apoferritin higher subunit; mRNA; complete cds.,0,135,24,53,35.49,GUUCUUGCUUCAACAGUGUUUGAACGGAAC,S64727.1/502-531 X51395.1/167-196 BC044961.1/14-43 M12120.1/24-53 M55010.1/7-36 M15655.1/24-53,24-53,0,29,M15655.1/24-53 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,46667,J02723.1,1,sp|J02723.1|RCFERPG Frog (Rana catesbeiana) apoferritin pseudogene.,0,136,161,190,30.74,GUUCUUGCUUCAACAGUAUUUGAACGGAAC,J02723.1/161-190,161-190,0,29,J02723.1/161-190 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,46689,M12120.1,1,sp|M12120.1|RCRCFA Bull frog (R.catesbeiana) tadpole red cell ferritin mRNA; complete cds.,0,137,24,53,35.49,GUUCUUGCUUCAACAGUGUUUGAACGGAAC,S64727.1/502-531 X51395.1/167-196 BC044961.1/14-43 M12120.1/24-53 M55010.1/7-36 M15655.1/24-53,24-53,0,29,M12120.1/24-53 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,47269,S64727.1,1,sp|S64727.1|S64727 ferritin [Xenopus laevis; XL2 cells; mRNA; 1388 nt].,0,138,502,531,35.49,GUUCUUGCUUCAACAGUGUUUGAACGGAAC,S64727.1/502-531 X51395.1/167-196 BC044961.1/14-43 M12120.1/24-53 M55010.1/7-36 M15655.1/24-53,502-531,0,29,S64727.1/502-531 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,47430,S77386.1,1,sp|S77386.1|S77386 ferritin middle subunit [Salmo salar=Atlantic salmon; liver; mRNA; 1010 nt].,0,139,28,57,33.71,GUUCUUGCUUCAACAGUGAUUGAACGGAAC,S77386.1/28-57,28-57,0,29,S77386.1/28-57 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,51051,M55010.1,1,sp|M55010.1|XLFERHSU Xenopus laevis ferritin H subunit mRNA; complete cds.,0,140,7,36,35.49,GUUCUUGCUUCAACAGUGUUUGAACGGAAC,S64727.1/502-531 X51395.1/167-196 BC044961.1/14-43 M12120.1/24-53 M55010.1/7-36 M15655.1/24-53,7-36,0,29,M55010.1/7-36 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,51052,X51395.1,1,sp|X51395.1|XLFERRIT Xenopus laevis mRNA for ferritin,0,141,167,196,35.49,GUUCUUGCUUCAACAGUGUUUGAACGGAAC,S64727.1/502-531 X51395.1/167-196 BC044961.1/14-43 M12120.1/24-53 M55010.1/7-36 M15655.1/24-53,167-196,0,29,X51395.1/167-196 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,4221,AB041512.1,1,sp|AB041512.1|AB041512 Homo sapiens genomic DNA; chromosome 6q21; clone:520L4.,0,142,99917,99943,22.26,AUAAUUUUAAACAGUGUUUGAAAUUAU,**** NEW HIT #51 ****,,2,0,AB041512.1/99917-99943 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,4270,AB042030.1,1,sp|AB042030.1|AB042030 Homo sapiens genomic DNA; chromosome 6q21; BAC clone:610J6.,0,143,14958,14984,22.26,AUAAUUUUAAACAGUGUUUGAAAUUAU,**** NEW HIT (duplicate of new hit #51) ****,,2,0,AB042030.1/14958-14984 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,5848,AB062402.1,1,sp|AB062402.1|AB062402 Homo sapiens OK/SW-cl.84 mRNA for ferritin-heavy polypeptide 1; complete cds.,0,144,11,40,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,11-40,0,29,AB062402.1/11-40 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9594,AC003025.1,1,sp|AC003025.1|AC003025 Human Chromosome 11p12.2 PAC clone pDJ466a11; complete sequence.,1,145,96822,96793,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,96822-96793,0,29,AC003025.1/96822-96793 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9672,AC003678.1,1,sp|AC003678.1|AC003678 Homo sapiens Chromosome 11q12.2 PAC clone pDJ632c8; complete sequence.,1,146,13322,13296,22.75,UCUCUCUUCCACAGUGUUGGGGAGACA,**** NEW HIT #53 ****,,2,0,AC003678.1/13322-13296 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9681,AC003689.1,1,sp|AC003689.1|AC003689 Homo sapiens Chromosome 11q12.2 PAC clone pDJ1081b4 containing human mRNA for T-cell glycoprotein CD6; complete sequence.,1,147,91473,91447,22.75,UCUCUCUUCCACAGUGUUGGGGAGACA,**** NEW HIT (duplicate of new hit #53) ****,,2,0,AC003689.1/91473-91447 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9787,AC004067.1,1,sp|AC004067.1|AC004067 Homo sapiens chromosome 4 clone B366O24 map 4q25; complete sequence.,0,148,59764,59790,25.41,UUUUUCUUAAACAGUGUUUUGAAAAGA,**** NEW HIT #55 ****,,2,0,AC004067.1/59764-59790 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,34,AC004548.1,1,sp|AC004548.1|AC004548 Homo sapiens PAC clone RP5-1182N3 from 7; complete sequence.,0,149,47613,47639,23.19,UCUUUCUUAAACAUUGUUUUGAAAAAA,**** NEW HIT #56 ****,,2,0,AC004548.1/47613-47639 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,576,AC005254.1,1,sp|AC005254.1|AC005254 Homo sapiens chromosome 19; long range PCR product from cosmid R29861; complete sequence.,1,150,6052,6026,23.34,UCUCCCAGCCUCAGUGUAGGCUGGAGG,**** NEW HIT #57 ****,,2,0,AC005254.1/6052-6026 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,999,AC005913.2,1,sp|AC005913.2|AC005913 Homo sapiens Xp22-175-176 BAC GSHB-484O17 (Genome Systems Human BAC Library) complete sequence.,0,151,96843,96872,34.85,UCUCUUGCUUCAACAGUGUUUGGACGGAAC,BC008439.1/26-55 BC016715.1/30-59 AY207005.1/30-59 BX571748.1/25-54 BC013928.1/30-59 BC004245.1/15-44 AC026803.7/202668-202697 AL031670.6/24125-24096 AK092744.1/974-1003 AK026534.1/26-55 AC005913.2/96843-96872 AJ339614.1/561-532 BC016346.1/30-59 AF119897.1/1702-1731 AP006212.1/14436-14465 BC021670.1/29-58 Y09188.1/4-33 BC016354.1/30-59,96843-96872,0,29,AC005913.2/96843-96872 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1093,AC006050.1,1,sp|AC006050.1|AC006050 Homo sapiens chromosome 17; clone hRPK.268_F_2; complete sequence.,0,152,67981,68013,22.86,AUUAUUGACACUUAAACAGUGCUUUAAUAUAAU,**** NEW HIT #58 ****,,2,0,AC006050.1/67981-68013 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1096,AC006054.2,1,sp|AC006054.2|AC006054 Homo sapiens Xq28 BAC GS1-382P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,153,115529,115500,30.24,UUUCCUGCUUCAACUGUGCUUGGACGGAAC,AC006054.2/115529-115500 L29074.1/153824-153853,115529-115500,0,29,AC006054.2/115529-115500 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1107,AC006070.1,1,sp|AC006070.1|AC006070 Homo sapiens chromosome 17; clone hRPK.206_C_20; complete sequence.,1,154,121038,121012,27.61,AUUCUUUGCAACAUUGUUUGCAAGAAU,**** NEW HIT #59 ****,,2,0,AC006070.1/121038-121012 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1119,AC006112.4,1,sp|AC006112.4|AC006112 Homo sapiens chromosome 16 clone RP11-472H7; complete sequence.,0,155,60257,60283,22.75,AUUUUCCUUGACAGUGCUCAAGAAAAU,**** NEW HIT #60 ****,,2,0,AC006112.4/60257-60283 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1171,AC006197.1,1,sp|AC006197.1|AC006197 Homo sapiens; clone hRPK.2_A_1; complete sequence.,0,156,64260,64287,24.81,UCUCUCUUCUACAGUGAUGGGACAGAAA,**** NEW HIT #61 ****,,2,0,AC006197.1/64260-64287 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1533,AC007094.3,1,sp|AC007094.3|AC007094 Homo sapiens BAC clone RP11-289L12 from 7; complete sequence.,0,157,71278,71304,22.23,AGUCUUGGAAACAGUGAUUUCUAGAAA,**** NEW HIT #62 ****,,2,0,AC007094.3/71278-71304 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1575,AC007200.1,1,sp|AC007200.1|AC007200 Homo sapiens chromosome 5 Bac clone CTB-54K3; complete sequence.,1,158,29824,29798,22.51,UUUAAUUCCCACAGUGUUGGUAAUAAC,**** NEW HIT #63 ****,,2,0,AC007200.1/29824-29798 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3793,AC011488.7,1,sp|AC011488.7|AC011488 Homo sapiens chromosome 19 clone CTB-171N13; complete sequence.,0,159,20387,20416,28.12,UCUCUUGCUUCCACAGUGUUUGGAUGGAAC,AC093078.3/36541-36570 AC011488.7/20387-20416,20387-20416,0,29,AC011488.7/20387-20416 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3924,AC011773.9,1,sp|AC011773.9|AC011773 Homo sapiens chromosome 8; clone RP11-219B4; complete sequence.,0,160,99308,99334,22.15,AUUAUCUUUAACAGUGUUUAAAAUUAA,**** NEW HIT #64 ****,,2,0,AC011773.9/99308-99334 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3962,AC011966.7,1,sp|AC011966.7|AC011966 Homo sapiens chromosome 15; clone RP11-285I14; complete sequence.,0,161,13498,13524,22.07,UCUAUUUUAGACAGUUUUCUGAGUAAG,**** NEW HIT #65 ****,,2,0,AC011966.7/13498-13524 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4371,AC013565.10,1,sp|AC013565.10|AC013565 Homo sapiens chromosome 15; clone RP11-326A19; complete sequence.,1,162,56576,56550,22.36,AGGCUCUGAAACAGUGCUUUCUAGCAU,**** NEW HIT #66 ****,,2,0,AC013565.10/56576-56550 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4415,AC015463.7,1,sp|AC015463.7|AC015463 Homo sapiens; clone RP11-114I9; complete sequence.,1,163,7047,7021,22.07,UCUAUUUUAGACAGUUUUCUGAGUAAG,**** NEW HIT (duplicate of new hit #65) ****,,2,0,AC015463.7/7047-7021 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4785,AC016877.11,1,sp|AC016877.11|AC016877 Homo sapiens chromosome 8; clone RP11-44N12; complete sequence.,1,164,64045,64019,22.27,UCUACCUUCCACAGUGUUGGGAUUAUA,**** NEW HIT #68 ****,,2,0,AC016877.11/64045-64019 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4937,AC018474.31,1,sp|AC018474.31|AC018474 Homo sapiens 12 BAC RP11-757E18 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,165,96788,96762,22.74,UUUCACAUGAACAGUGCUUAGUAGAAG,**** NEW HIT #69 ****,,2,0,AC018474.31/96788-96762 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5785,AC022332.16,1,sp|AC022332.16|AC022332 Homo sapiens 3 BAC RP11-627P8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,166,1760,1786,25.81,AUUUUCUUCAUCAGUGUAUGGGAAAAU,**** NEW HIT #70 ****,,2,0,AC022332.16/1760-1786 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6119,AC023644.6,1,sp|AC023644.6|AC023644 Homo sapiens chromosome 8; clone RP11-257P3; complete sequence.,0,167,42849,42878,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,42849-42878,0,29,AC023644.6/42849-42878 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6270,AC024382.7,1,sp|AC024382.7|AC024382 Homo sapiens chromosome 8; clone RP11-351C8; complete sequence.,1,168,111638,111609,24.13,AUCACUGCUUCCACAGUGCUGGAACUUAAU,**** NEW HIT #71 ****,,2,0,AC024382.7/111638-111609 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6345,AC024937.21,1,sp|AC024937.21|AC024937 Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,169,105699,105673,23.22,UUUAUCAGUGACAGAGUUCACUAUAAA,AC024937.21/105699-105673 AF187320.1/31063-31089 BC001188.1/3225-3251 BX537966.1/3039-3065 BC054522.1/3166-3192 AJ426432.1/1154-1180 M58040.1/2819-2845 X01060.1/3432-3458,105699-105673 105180-105154 105133-105107 105245-105219 105649-105623,0,26,AC024937.21/105699-105673 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6345,AC024937.21,1,sp|AC024937.21|AC024937 Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,170,105649,105623,28.25,AUUAUCGGAAGCAGUGCCUUCCAUAAU,M58040.1/2869-2895 X01060.1/3482-3508 AF187320.1/31113-31139 AC024937.21/105649-105623 AJ426432.1/1214-1240 BC054522.1/3225-3251 BC001188.1/3275-3301 BX537966.1/3089-3115,105699-105673 105180-105154 105133-105107 105245-105219 105649-105623,0,26,AC024937.21/105649-105623 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6345,AC024937.21,1,sp|AC024937.21|AC024937 Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,171,105245,105219,27.71,AUUAUCGGGAGCAGUGUCUUCCAUAAU,BX537966.1/3491-3517 AC024937.21/105245-105219 BC054522.1/3604-3630 X01060.1/3885-3911 M58040.1/3244-3270 BC001188.1/3679-3705 AJ426432.1/1593-1619 AF187320.1/31517-31543,105699-105673 105180-105154 105133-105107 105245-105219 105649-105623,0,26,AC024937.21/105245-105219 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6345,AC024937.21,1,sp|AC024937.21|AC024937 Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,172,105180,105154,25.13,UGUAUCGGAGACAGUGAUCUCCAUAUG,AC024937.21/105180-105154 BC001188.1/3744-3770 BX537966.1/3556-3582 AF187320.1/31582-31608 X01060.1/3950-3976,105699-105673 105180-105154 105133-105107 105245-105219 105649-105623,0,26,AC024937.21/105180-105154 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6345,AC024937.21,1,sp|AC024937.21|AC024937 Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,173,105133,105107,30.18,AUUAUCGGGAACAGUGUUUCCCAUAAU,M58040.1/3356-3382 BC001188.1/3791-3817 AC024937.21/105133-105107 AF187320.1/31629-31655 X01060.1/3997-4023 AJ426432.1/1705-1731 BC054522.1/3716-3742 BX537966.1/3603-3629,105699-105673 105180-105154 105133-105107 105245-105219 105649-105623,0,26,AC024937.21/105133-105107 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6725,AC026367.14,1,sp|AC026367.14|AC026367 Homo sapiens 12 BAC RP11-131L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,174,93124,93151,22.52,AUUUUUUUUAACAGUGUUUAGACACAAA,**** NEW HIT #72 ****,,2,0,AC026367.14/93124-93151 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6772,AC026439.4,1,sp|AC026439.4|AC026439 Homo sapiens chromosome 5 clone CTD-2267H19; complete sequence.,1,175,59909,59883,22.79,ACUUUUGUAAACAGUGUUUUGUAAACU,**** NEW HIT #73 ****,,2,0,AC026439.4/59909-59883 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6888,AC026785.4,1,sp|AC026785.4|AC026785 Homo sapiens chromosome 5 clone CTD-2139B15; complete sequence.,0,176,25937,25966,32.45,UUUCCUGCUUCAACAGUGCUUGGACAGAAC,AL590037.7/73844-73873 AC026785.4/25937-25966,25937-25966,0,29,AC026785.4/25937-25966 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6905,AC026803.7,1,sp|AC026803.7|AC026803 Homo sapiens chromosome 19 clone CTD-2639E6; complete sequence.,0,177,202668,202697,34.85,UCUCUUGCUUCAACAGUGUUUGGACGGAAC,BC008439.1/26-55 BC016715.1/30-59 AY207005.1/30-59 BX571748.1/25-54 BC013928.1/30-59 BC004245.1/15-44 AC026803.7/202668-202697 AL031670.6/24125-24096 AK092744.1/974-1003 AK026534.1/26-55 AC005913.2/96843-96872 AJ339614.1/561-532 BC016346.1/30-59 AF119897.1/1702-1731 AP006212.1/14436-14465 BC021670.1/29-58 Y09188.1/4-33 BC016354.1/30-59,202668-202697,0,29,AC026803.7/202668-202697 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7840,AC068792.31,1,sp|AC068792.31|AC068792 Homo sapiens 12 BAC RP11-771K4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,178,86467,86438,22.01,CCUUACGCAGCAACAGUGCUUGCUUUGAAA,**** NEW HIT #74 ****,,2,0,AC068792.31/86467-86438 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8030,AC069476.25,1,sp|AC069476.25|AC069476 Homo sapiens chromosome 11 clone b430h11 map 11; complete sequence.,1,179,36991,36963,28.48,UUUCUUCUUCAACAGUGUUUGGAUGGAAC,AP003174.2/91762-91734 AC069476.25/36991-36963,36991-36963,0,28,AC069476.25/36991-36963 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8124,AC073115.5,1,sp|AC073115.5|AC073115 Homo sapiens BAC clone RP11-571N3 from 7; complete sequence.,1,180,47515,47486,32.81,UCUCUUGCUUCAACAGUGUUUGGAUGGAAC,AC073115.5/47515-47486,47515-47486,0,29,AC073115.5/47515-47486 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8232,AC073345.11,1,sp|AC073345.11|AC073345 Homo sapiens BAC clone RP11-630O5 from 7; complete sequence.,0,181,134049,134078,27.07,UCUCUUGCGUCAAUAGUGUUUGGACAGAAC,AC073345.11/134049-134078,134049-134078,0,29,AC073345.11/134049-134078 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8485,AC074117.7,1,sp|AC074117.7|AC074117 Homo sapiens BAC clone RP11-413M20 from 2; complete sequence.,0,182,152520,152549,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,152520-152549,0,29,AC074117.7/152520-152549 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8639,AC078871.16,1,sp|AC078871.16|AC078871 Homo sapiens 12q BAC RP11-919C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,183,3465,3492,24.81,UCUCUCUUCUACAGUGAUGGGACAGAAA,**** NEW HIT (duplicate of new hit #61) ****,,2,0,AC078871.16/3465-3492 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8641,AC078873.22,1,sp|AC078873.22|AC078873 Homo sapiens 12q BAC RP11-916O13 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,184,67519,67493,24.21,GUUAAUUGCAGCAGUGUUUGCAGUAAC,**** NEW HIT #76 ****,,2,0,AC078873.22/67519-67493 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8715,AC079061.8,1,sp|AC079061.8|AC079061 Homo sapiens chromosome 8; clone RP11-422N16; complete sequence.,1,185,20012,19986,23.68,AUUAUUUUCAUCAGUGCAUGAAGUAUU,**** NEW HIT #77 ****,,2,0,AC079061.8/20012-19986 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9518,AC087575.11,1,sp|AC087575.11|AC087575 Homo sapiens chromosome 17; clone RP11-305L6; complete sequence.,1,186,151101,151072,22.94,UCUCUUGCUUCAACAGUGUUUAGAACGAAC,AC138761.4/64571-64600 AC087575.11/151101-151072,151101-151072,0,29,AC087575.11/151101-151072 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9897,AC090685.8,1,sp|AC090685.8|AC090685 Homo sapiens chromosome 17; clone RP11-252O24; complete sequence.,0,187,157509,157541,22.86,AUUAUUGACACUUAAACAGUGCUUUAAUAUAAU,**** NEW HIT (duplicate of new hit #58) ****,,2,0,AC090685.8/157509-157541 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,670,AC092506.3,1,sp|AC092506.3|AC092506 Homo sapiens chromosome 1 clone RP11-364B6; complete sequence.,0,188,100191,100220,34.53,UGUCUUGCUUCAACAGUGUUUGGACGGAAC,AC092506.3/100191-100220,100191-100220,0,29,AC092506.3/100191-100220 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,681,AC092544.4,1,sp|AC092544.4|AC092544 Homo sapiens BAC clone RP11-317F4 from 4; complete sequence.,1,189,126999,126973,24.38,UUAAUUGGCAACAGUGUUUGCCCUCAC,**** NEW HIT #79 ****,,2,0,AC092544.4/126999-126973 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,948,AC092932.9,1,sp|AC092932.9|AC092932 Homo sapiens 3 BAC RP11-152C17 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,190,245,219,25.81,AUUUUCUUCAUCAGUGUAUGGGAAAAU,**** NEW HIT (duplicate of new hit #70) ****,,2,0,AC092932.9/245-219 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1064,AC093078.3,1,sp|AC093078.3|AC093078 Homo sapiens chromosome 19 clone LLNLR-305B7; complete sequence.,0,191,36541,36570,28.12,UCUCUUGCUUCCACAGUGUUUGGAUGGAAC,AC093078.3/36541-36570 AC011488.7/20387-20416,36541-36570,0,29,AC093078.3/36541-36570 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1268,AC093484.2,1,sp|AC093484.2|AC093484 Homo sapiens chromosome ; clone RP11-138I1; complete sequence.,0,192,112050,112079,25.31,UCUUUUGCUUCAACAGUGUUUGGAACGAAC,AC093484.2/112050-112079,112050-112079,0,29,AC093484.2/112050-112079 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2090,AC098481.2,1,sp|AC098481.2|AC098481 Homo sapiens chromosome 3 clone RP11-349E16; complete sequence.,0,193,107311,107340,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,107311-107340,0,29,AC098481.2/107311-107340 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3072,AC104823.4,1,sp|AC104823.4|AC104823 Homo sapiens BAC clone RP11-762E8 from 2; complete sequence.,0,194,27428,27454,22.20,UCUCUUUUAAACAGUGUUUAAAUGAAC,**** NEW HIT #81 ****,,2,0,AC104823.4/27428-27454 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3246,AC105314.5,1,sp|AC105314.5|AC105314 Homo sapiens BAC clone RP11-312H15 from 4; complete sequence.,0,195,159491,159517,25.41,UUUUUCUUAAACAGUGUUUUGAAAAGA,**** NEW HIT (duplicate of new hit #55) ****,,2,0,AC105314.5/159491-159517 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3509,AC106872.5,1,sp|AC106872.5|AC106872 Homo sapiens BAC clone RP11-366M4 from 4; complete sequence.,0,196,126189,126215,22.25,UUUCUUGGAGACAGUGAUUCCCGGAAC,**** NEW HIT #83 ****,,2,0,AC106872.5/126189-126215 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3530,AC106895.5,1,sp|AC106895.5|AC106895 Homo sapiens BAC clone RP11-161D15 from 4; complete sequence.,0,197,107432,107458,23.67,UUUAUCGGCCACAGUGGUGGCCAUAAU,**** NEW HIT #84 ****,,2,0,AC106895.5/107432-107458 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4088,AC109352.3,1,sp|AC109352.3|AC109352 Homo sapiens BAC clone RP11-489P20 from 4; complete sequence.,0,198,19020,19048,28.43,UUUCCUGUUUCAACAGUGCUUGGAGGAAC,AC109352.3/19020-19048,19020-19048,0,28,AC109352.3/19020-19048 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4264,AC110288.10,1,sp|AC110288.10|AC110288 Homo sapiens chromosome 8; clone CTD-2281E23; complete sequence.,1,199,23790,23764,23.38,GCUCUUGUGAACAGUGCUUCACUGAAC,**** NEW HIT #85 ****,,2,0,AC110288.10/23790-23764 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4748,AC114277.2,1,sp|AC114277.2|AC114277 Homo sapiens chromosome 5 clone CTD-2009F3; complete sequence.,0,200,68423,68449,22.79,ACUUUUGUAAACAGUGUUUUGUAAACU,**** NEW HIT (duplicate of new hit #73) ****,,2,0,AC114277.2/68423-68449 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4896,AC114876.2,1,sp|AC114876.2|AC114876 Homo sapiens chromosome 3 clone RP11-728B21; complete sequence.,1,201,16480,16451,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,16480-16451,0,29,AC114876.2/16480-16451 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5462,AC120035.6,1,sp|AC120035.6|AC120035 Homo sapiens chromosome 8; clone RP11-1116K10; complete sequence.,1,202,145175,145149,23.38,GCUCUUGUGAACAGUGCUUCACUGAAC,**** NEW HIT (duplicate of new hit #85) ****,,2,0,AC120035.6/145175-145149 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6383,AC134043.1,1,sp|AC134043.1|AC134043 Homo sapiens chromosome 5 clone RP11-175K6; complete sequence.,1,203,107851,107825,22.51,UUUAAUUCCCACAGUGUUGGUAAUAAC,**** NEW HIT (duplicate of new hit #63) ****,,2,0,AC134043.1/107851-107825 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6712,AC138315.2,1,sp|AC138315.2|AC138315 Homo sapiens 3 BAC RP11-163K7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,204,22419,22448,22.69,UGUUUUCCUGGGACAGUGCUCCCACAGAGG,**** NEW HIT #89 ****,,2,0,AC138315.2/22419-22448 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6729,AC138430.2,1,sp|AC138430.2|AC138430 Homo sapiens chromosome 19 clone LLNLR-259H9; complete sequence.,0,205,26197,26223,23.34,UCUCCCAGCCUCAGUGUAGGCUGGAGG,**** NEW HIT (duplicate of new hit #57) ****,,2,0,AC138430.2/26197-26223 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6773,AC138761.4,1,sp|AC138761.4|AC138761 Homo sapiens chromosome 17; clone RP11-1109M24; complete sequence.,0,206,64571,64600,22.94,UCUCUUGCUUCAACAGUGUUUAGAACGAAC,AC138761.4/64571-64600 AC087575.11/151101-151072,64571-64600,0,29,AC138761.4/64571-64600 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6879,AC139617.6,1,sp|AC139617.6|AC139617 Homo sapiens 3 BAC RP11-722C17 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,207,17621,17592,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,17621-17592,0,29,AC139617.6/17621-17592 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,7123,AE000658.1,1,sp|AE000658.1|AE000658 Homo sapiens T-cell receptor alpha delta locus from bases 1 to 250529 (section 1 of 5) of the Complete Nucleotide Sequence.,1,208,20581,20552,28.03,UCUCUUGCUUCAACAGUGUUUAGAUGGAAC,AL161747.5/131019-130990 AE000658.1/20581-20552 AF283991.1/1547-1576,20581-20552,0,29,AE000658.1/20581-20552 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz,4286,AF068624.1,1,sp|AF068624.1|AF068624 Homo sapiens 5-aminolevulinate synthase 2 (ALAS2) gene; complete cds.,0,209,10369,10395,23.78,UCGUUCGUCCUCAGUGCAGGGCAACAG,Z83821.1/18198-18224 AF086786.1/2-28 AF068624.1/10369-10395 AL020991.1/19700-19726 X60364.1/11-37,10369-10395,0,26,AF068624.1/10369-10395 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,1215,AF117958.1,1,sp|AF117958.1|AF117958 Homo sapiens ferritin L subunit gene; partial sequence.,0,210,132,161,32.46,UCUCUUGUUUCAACAGUGUUUGGACGGAAC,AF117958.1/132-161,132-161,0,29,AF117958.1/132-161 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,1425,AF119897.1,1,sp|AF119897.1|AF119897 Homo sapiens PRO2760 mRNA; complete cds.,0,211,1702,1731,34.85,UCUCUUGCUUCAACAGUGUUUGGACGGAAC,BC008439.1/26-55 BC016715.1/30-59 AY207005.1/30-59 BX571748.1/25-54 BC013928.1/30-59 BC004245.1/15-44 AC026803.7/202668-202697 AL031670.6/24125-24096 AK092744.1/974-1003 AK026534.1/26-55 AC005913.2/96843-96872 AJ339614.1/561-532 BC016346.1/30-59 AF119897.1/1702-1731 AP006212.1/14436-14465 BC021670.1/29-58 Y09188.1/4-33 BC016354.1/30-59,1702-1731,0,29,AF119897.1/1702-1731 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,3066,AF139813.1,1,sp|AF139813.1|AF139813 Homo sapiens clone pDJ759j12 chromosome 11 map 11q13; complete sequence.,0,212,20130,20159,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,20130-20159,0,29,AF139813.1/20130-20159 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,6652,AF187320.1,1,sp|AF187320.1|AF187320 Homo sapiens transferrin receptor (TFRC) gene; complete cds.,0,213,31063,31089,23.22,UUUAUCAGUGACAGAGUUCACUAUAAA,AC024937.21/105699-105673 AF187320.1/31063-31089 BC001188.1/3225-3251 BX537966.1/3039-3065 BC054522.1/3166-3192 AJ426432.1/1154-1180 M58040.1/2819-2845 X01060.1/3432-3458,31629-31655 31113-31139 31063-31089 31582-31608 31517-31543,0,26,AF187320.1/31063-31089 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,6652,AF187320.1,1,sp|AF187320.1|AF187320 Homo sapiens transferrin receptor (TFRC) gene; complete cds.,0,214,31113,31139,28.25,AUUAUCGGAAGCAGUGCCUUCCAUAAU,M58040.1/2869-2895 X01060.1/3482-3508 AF187320.1/31113-31139 AC024937.21/105649-105623 AJ426432.1/1214-1240 BC054522.1/3225-3251 BC001188.1/3275-3301 BX537966.1/3089-3115,31629-31655 31113-31139 31063-31089 31582-31608 31517-31543,0,26,AF187320.1/31113-31139 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,6652,AF187320.1,1,sp|AF187320.1|AF187320 Homo sapiens transferrin receptor (TFRC) gene; complete cds.,0,215,31517,31543,27.71,AUUAUCGGGAGCAGUGUCUUCCAUAAU,BX537966.1/3491-3517 AC024937.21/105245-105219 BC054522.1/3604-3630 X01060.1/3885-3911 M58040.1/3244-3270 BC001188.1/3679-3705 AJ426432.1/1593-1619 AF187320.1/31517-31543,31629-31655 31113-31139 31063-31089 31582-31608 31517-31543,0,26,AF187320.1/31517-31543 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,6652,AF187320.1,1,sp|AF187320.1|AF187320 Homo sapiens transferrin receptor (TFRC) gene; complete cds.,0,216,31582,31608,25.13,UGUAUCGGAGACAGUGAUCUCCAUAUG,AC024937.21/105180-105154 BC001188.1/3744-3770 BX537966.1/3556-3582 AF187320.1/31582-31608 X01060.1/3950-3976,31629-31655 31113-31139 31063-31089 31582-31608 31517-31543,0,26,AF187320.1/31582-31608 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,6652,AF187320.1,1,sp|AF187320.1|AF187320 Homo sapiens transferrin receptor (TFRC) gene; complete cds.,0,217,31629,31655,30.18,AUUAUCGGGAACAGUGUUUCCCAUAAU,M58040.1/3356-3382 BC001188.1/3791-3817 AC024937.21/105133-105107 AF187320.1/31629-31655 X01060.1/3997-4023 AJ426432.1/1705-1731 BC054522.1/3716-3742 BX537966.1/3603-3629,31629-31655 31113-31139 31063-31089 31582-31608 31517-31543,0,26,AF187320.1/31629-31655 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz,4458,AF283991.1,1,sp|AF283991.1|AF283991 Homo sapiens (N6-adenosine)-methyltransferase gene; complete cds.,0,218,1547,1576,28.03,UCUCUUGCUUCAACAGUGUUUAGAUGGAAC,AL161747.5/131019-130990 AE000658.1/20581-20552 AF283991.1/1547-1576,1547-1576,0,29,AF283991.1/1547-1576 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz,4479,AK026534.1,1,sp|AK026534.1|AK026534 Homo sapiens cDNA: FLJ22881 fis; clone KAT03571; highly similar to HUMFERL Human ferritin L chain mRNA.,0,219,26,55,34.85,UCUCUUGCUUCAACAGUGUUUGGACGGAAC,BC008439.1/26-55 BC016715.1/30-59 AY207005.1/30-59 BX571748.1/25-54 BC013928.1/30-59 BC004245.1/15-44 AC026803.7/202668-202697 AL031670.6/24125-24096 AK092744.1/974-1003 AK026534.1/26-55 AC005913.2/96843-96872 AJ339614.1/561-532 BC016346.1/30-59 AF119897.1/1702-1731 AP006212.1/14436-14465 BC021670.1/29-58 Y09188.1/4-33 BC016354.1/30-59,26-55,0,29,AK026534.1/26-55 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz,6100,AK054816.1,1,sp|AK054816.1|AK054816 Homo sapiens cDNA FLJ30254 fis; clone BRACE2002441; highly similar to FERRITIN HEAVY CHAIN.,0,220,1277,1306,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,1277-1306,0,29,AK054816.1/1277-1306 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz,3365,AK092744.1,1,sp|AK092744.1|AK092744 Homo sapiens cDNA FLJ35425 fis; clone SMINT2001615; highly similar to FERRITIN LIGHT CHAIN.,0,221,974,1003,34.85,UCUCUUGCUUCAACAGUGUUUGGACGGAAC,BC008439.1/26-55 BC016715.1/30-59 AY207005.1/30-59 BX571748.1/25-54 BC013928.1/30-59 BC004245.1/15-44 AC026803.7/202668-202697 AL031670.6/24125-24096 AK092744.1/974-1003 AK026534.1/26-55 AC005913.2/96843-96872 AJ339614.1/561-532 BC016346.1/30-59 AF119897.1/1702-1731 AP006212.1/14436-14465 BC021670.1/29-58 Y09188.1/4-33 BC016354.1/30-59,974-1003,0,29,AK092744.1/974-1003 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,50,AL138710.16,1,sp|AL138710.16|AL138710 Human DNA sequence from clone RP11-469A21 on chromosome 13,0,222,25137,25163,22.36,GUUUUUGUCAUCAGUUAAUGGCAAAAC,**** NEW HIT #91 ****,,2,0,AL138710.16/25137-25163 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,190,AL138916.14,1,sp|AL138916.14|AL138916 Human DNA sequence from clone RP11-497D6 on chromosome 6,0,223,111000,111026,22.10,UGUAUGUUUAUCAGUGCAUAGAAUAAC,**** NEW HIT #92 ****,,2,0,AL138916.14/111000-111026 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,1153,AL162458.10,1,sp|AL162458.10|AL162458 Human DNA sequence from clone RP11-465L10 on chromosome 20. Contains 10 CpG islands; ESTs; STSs and GSSs. Contains the gene for,1,224,62663,62634,34.96,UGUCUUGCUUCAACAGUGUUUGGACGGAAG,AL162458.10/62663-62634,62663-62634,0,29,AL162458.10/62663-62634 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,1406,AL353745.7,1,sp|AL353745.7|AL353745 Human DNA sequence from clone RP11-560D2 on chromosome 9 Contains a ferritin; light polypeptide-like pseudogene and a heat shoc,0,225,70647,70676,23.41,UUUCUUGCUUUAACAGUAUUUUGACAGAGC,AL353745.7/70647-70676,70647-70676,0,29,AL353745.7/70647-70676 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,1567,AL354803.24,1,sp|AL354803.24|AL354803 Human DNA sequence from clone RP11-539I23 on chromosome 13,1,226,111711,111685,22.02,AUUUUUUUCAUCAGUGUUGGGAAAAAU,**** NEW HIT #93 ****,,2,0,AL354803.24/111711-111685 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,1588,AL354828.12,1,sp|AL354828.12|AL354828 Human DNA sequence from clone RP11-274P12 on chromosome 13,1,227,100012,99983,35.64,UUUCCUGCUUCAACAGUGCUUGGACGGAAC,BC016009.1/33-62 M14211.1/196-225 AC003025.1/96822-96793 BC011359.1/20-49 X03486.1/119-148 AC098481.2/107311-107340 D15071.1/13-42 AF139813.1/20130-20159 AC139617.6/17621-17592 AB062402.1/11-40 AC114876.2/16480-16451 X03487.1/208-237 AC074117.7/152520-152549 AJ326592.1/167-196 AL354828.12/100012-99983 AP002343.2/2540-2511 D28463.1/31-60 AC023644.6/42849-42878 X03485.1/119-148 L20941.1/30-59 BC000857.1/17-46 BC013724.1/23-52 AJ324692.1/102-131 AP006260.2/129792-129763 AK054816.1/1277-1306 AP003733.5/17837-17808 AL449215.3/115692-115663,100012-99983,0,29,AL354828.12/100012-99983 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2278,AL357149.13,1,sp|AL357149.13|AL357149 Human DNA sequence from clone RP11-352E13 on chromosome 6,1,228,87262,87236,25.45,UUCUUCUGCAACAGUGUUUGCAGGGAG,AL357149.13/87262-87236,87262-87236,0,26,AL357149.13/87262-87236 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2500,AL359174.14,1,sp|AL359174.14|AL359174 Human DNA sequence from clone RP11-423D17 on chromosome 6,0,229,103948,103974,22.26,AUAAUUUUAAACAGUGUUUGAAAUUAU,**** NEW HIT (duplicate of new hit #51) ****,,2,0,AL359174.14/103948-103974 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2682,AL359816.16,1,sp|AL359816.16|AL359816 Human DNA sequence from clone RP11-37P5 on chromosome 10,1,230,59305,59276,27.66,UCUCUUGCUUCAACAGUGUUUGGAAGGAAU,AL359816.16/59305-59276,59305-59276,0,29,AL359816.16/59305-59276 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2797,AL360173.15,1,sp|AL360173.15|AL360173 Human DNA sequence from clone RP11-75F12 on chromosome Xq21.31-22.2,1,231,76583,76557,22.72,CCUUGCUUAAACAGUGUUUUAACAAAG,**** NEW HIT #95 ****,,2,0,AL360173.15/76583-76557 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2824,AL360235.12,1,sp|AL360235.12|AL360235 Human DNA sequence from clone RP11-88M9 on chromosome 9,0,232,41717,41743,25.46,AGUAUCUUCAACAGUGGUUGAAGUAAU,**** NEW HIT #96 ****,,2,0,AL360235.12/41717-41743 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,3092,AL390878.6,1,sp|AL390878.6|AL390878 Human DNA sequence from clone RP11-442F12 on chromosome 13,0,233,166794,166823,26.66,UCACUUGCUUCAACAGUGAUUGGACAGAAU,AL390878.6/166794-166823,166794-166823,0,29,AL390878.6/166794-166823 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,4353,AL590037.7,1,sp|AL590037.7|AL590037 Human DNA sequence from clone RP11-129K24 on chromosome 6,0,234,73844,73873,32.45,UUUCCUGCUUCAACAGUGCUUGGACAGAAC,AL590037.7/73844-73873 AC026785.4/25937-25966,73844-73873,0,29,AL590037.7/73844-73873 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,4627,AL590725.5,1,sp|AL590725.5|AL590725 Human DNA sequence from clone RP11-107L15 on chromosome 6,1,235,167724,167698,26.83,UUUAUCUUUAACAGUGAUUAAAGUAAA,**** NEW HIT #97 ****,,2,0,AL590725.5/167724-167698 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,5002,AL592437.7,1,sp|AL592437.7|AL592437 Human DNA sequence from clone RP11-18B3 on chromosome 9,0,236,34851,34880,28.98,UUCCUUGCUUCAACAGUGUUUGGAUGGAAC,AL592437.7/34851-34880,34851-34880,0,29,AL592437.7/34851-34880 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,6487,AP000485.5,1,sp|AP000485.5|AP000485 Homo sapiens genomic DNA; chromosome 11; clone:CMB9-21L24.,1,237,45574,45545,22.67,UCUCUUGCUUCAAUAGUAUUUGGAUGGAAC,AP001157.4/190953-190924 AP000485.5/45574-45545,45574-45545,0,29,AP000485.5/45574-45545 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,6863,AP001157.4,1,sp|AP001157.4|AP001157 Homo sapiens genomic DNA; chromosome 11q clone:RP11-658F2.,1,238,190953,190924,22.67,UCUCUUGCUUCAAUAGUAUUUGGAUGGAAC,AP001157.4/190953-190924 AP000485.5/45574-45545,190953-190924,0,29,AP001157.4/190953-190924 ./cmzasha --no-stderr --filter 40 22 Rfam/cm/RF00037.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00037_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00037.cm (g