params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,1673,AB027323.1,1,sp|AB027323.1|AB027323 Cordyceps paradoxa DNA for 18S ribosomal RNA.,1,0,2240,2215,25.29,AACAGGGCCCUUUUCAGGGCCCCCUC,AB027323.1/2240-2215,2240-2215,0,25,AB027323.1/2240-2215
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,140,AJ238321.1,1,sp|AJ238321.1|AAQ238321 Asellus aquaticus 5S rRNA gene; histone H2B; histone H2A; histone H3 and histone H4.,0,1,3588,3613,26.17,CAAAAGGGUCUAUUUAGACCCACAAA,****    NEW  HIT  #0  ****,2546-2521,2,0,AJ238321.1/3588-3613
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,140,AJ238321.1,1,sp|AJ238321.1|AAQ238321 Asellus aquaticus 5S rRNA gene; histone H2B; histone H2A; histone H3 and histone H4.,1,2,2546,2521,25.79,AAAAAGGCCCUAUUUAGGGCCAAAUA,AJ238321.1/2546-2521,2546-2521,0,25,AJ238321.1/2546-2521
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,289,AB002280.1,1,sp|AB002280.1|AB002280 Bombyx mori L1Bm DNA; non-LTR retrotransposon.,0,3,288,313,32.50,CAAAAGGCCCUUUUCAGGGCCGCAAA,AB002280.1/288-313,288-313,0,25,AB002280.1/288-313
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,289,AB002280.1,1,sp|AB002280.1|AB002280 Bombyx mori L1Bm DNA; non-LTR retrotransposon.,0,4,996,1021,27.46,CCAACUGCCUUUUUCAAGGCAACCAA,****    NEW  HIT  #1  ****,288-313,2,0,AB002280.1/996-1021
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,290,AB002281.1,1,sp|AB002281.1|AB002281 Bombyx mori L1Bm DNA; non-LTR retrotransposon.,0,5,292,317,25.27,CAAAAGGACCUUUUAAGGGCCGCAAA,AB002281.1/292-317,292-317,0,25,AB002281.1/292-317
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,1061,AB019400.1,1,sp|AB019400.1|AB019400 Drosophila melanogaster gene for histone H3; complete cds.,0,6,820,845,27.74,UAAUCGGUCCUUUUCAGGACCACAAA,AB055959.1/4585-4560 X14215.1/3318-3293 X60225.1/1393-1368 AB003784.1/786-811 AB019400.1/820-845 AB019402.1/789-814 AB019403.1/787-812 AB019401.1/786-811 X13788.1/1022-997 AE003670.4/137528-137553,820-845,0,25,AB019400.1/820-845
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,1062,AB019401.1,1,sp|AB019401.1|AB019401 Drosophila simulans gene for histone H3; complete cds.,0,7,786,811,27.74,UAAUCGGUCCUUUUCAGGACCACAAA,AB055959.1/4585-4560 X14215.1/3318-3293 X60225.1/1393-1368 AB003784.1/786-811 AB019400.1/820-845 AB019402.1/789-814 AB019403.1/787-812 AB019401.1/786-811 X13788.1/1022-997 AE003670.4/137528-137553,786-811,0,25,AB019401.1/786-811
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,1063,AB019402.1,1,sp|AB019402.1|AB019402 Drosophila sechellia gene for histone H3; complete cds.,0,8,789,814,27.74,UAAUCGGUCCUUUUCAGGACCACAAA,AB055959.1/4585-4560 X14215.1/3318-3293 X60225.1/1393-1368 AB003784.1/786-811 AB019400.1/820-845 AB019402.1/789-814 AB019403.1/787-812 AB019401.1/786-811 X13788.1/1022-997 AE003670.4/137528-137553,789-814,0,25,AB019402.1/789-814
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,1064,AB019403.1,1,sp|AB019403.1|AB019403 Drosophila mauritiana gene for histone H3; complete cds.,0,9,787,812,27.74,UAAUCGGUCCUUUUCAGGACCACAAA,AB055959.1/4585-4560 X14215.1/3318-3293 X60225.1/1393-1368 AB003784.1/786-811 AB019400.1/820-845 AB019402.1/789-814 AB019403.1/787-812 AB019401.1/786-811 X13788.1/1022-997 AE003670.4/137528-137553,787-812,0,25,AB019403.1/787-812
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,1065,AB019404.1,1,sp|AB019404.1|AB019404 Drosophila teissieri gene for histone H3; complete cds.,0,10,806,831,29.39,CAAUCGGUCCUUUUCAGGACCACAAA,AB019404.1/806-831 AB073635.1/4724-4699 AB019407.1/798-823 AB073634.1/4669-4644 AB019406.1/811-836,806-831,0,25,AB019404.1/806-831
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,1067,AB019406.1,1,sp|AB019406.1|AB019406 Drosophila erecta gene for histone H3; complete cds.,0,11,811,836,29.39,CAAUCGGUCCUUUUCAGGACCACAAA,AB019404.1/806-831 AB073635.1/4724-4699 AB019407.1/798-823 AB073634.1/4669-4644 AB019406.1/811-836,811-836,0,25,AB019406.1/811-836
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,1068,AB019407.1,1,sp|AB019407.1|AB019407 Drosophila orena gene for histone H3; complete cds.,0,12,798,823,29.39,CAAUCGGUCCUUUUCAGGACCACAAA,AB019404.1/806-831 AB073635.1/4724-4699 AB019407.1/798-823 AB073634.1/4669-4644 AB019406.1/811-836,798-823,0,25,AB019407.1/798-823
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,2989,AB055959.1,1,sp|AB055959.1|AB055959 Drosophila simulans H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds.,0,13,637,662,26.62,CCAUCGGUCCUUUUCAGGACCACUAU,AB055959.1/637-662,4585-4560 2078-2103 637-662,0,25,AB055959.1/637-662
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,2989,AB055959.1,1,sp|AB055959.1|AB055959 Drosophila simulans H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds.,0,14,2078,2103,35.94,AAAACGGCCCUUUUCAGGGCCACAAU,AB073634.1/2133-2158 AB055959.1/2078-2103 AE003670.4/134986-134961 AB073635.1/2145-2170 X14215.1/817-842,4585-4560 2078-2103 637-662,0,25,AB055959.1/2078-2103
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,2989,AB055959.1,1,sp|AB055959.1|AB055959 Drosophila simulans H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds.,1,15,4585,4560,27.74,UAAUCGGUCCUUUUCAGGACCACAAA,AB055959.1/4585-4560 X14215.1/3318-3293 X60225.1/1393-1368 AB003784.1/786-811 AB019400.1/820-845 AB019402.1/789-814 AB019403.1/787-812 AB019401.1/786-811 X13788.1/1022-997 AE003670.4/137528-137553,4585-4560 2078-2103 637-662,0,25,AB055959.1/4585-4560
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,2989,AB055959.1,1,sp|AB055959.1|AB055959 Drosophila simulans H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds.,1,16,1030,1005,30.59,CAAACCGUCCUUUUCAGGACGACCAA,X14215.1/4806-4781,4585-4560 2078-2103 637-662,0,0,AB055959.1/1030-1005
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3676,AB073634.1,1,sp|AB073634.1|AB073634 Drosophila erecta H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds.,0,17,652,677,28.34,CAAUCGGUCCUUUUCAGGACCACCAU,X14215.1/4412-4437 AB073634.1/652-677 AE003670.4/136432-136407,2133-2158 2450-2425 4669-4644 652-677,0,25,AB073634.1/652-677
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3676,AB073634.1,1,sp|AB073634.1|AB073634 Drosophila erecta H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds.,0,18,2133,2158,35.94,AAAACGGCCCUUUUCAGGGCCACAAU,AB073634.1/2133-2158 AB055959.1/2078-2103 AE003670.4/134986-134961 AB073635.1/2145-2170 X14215.1/817-842,2133-2158 2450-2425 4669-4644 652-677,0,25,AB073634.1/2133-2158
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3676,AB073634.1,1,sp|AB073634.1|AB073634 Drosophila erecta H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds.,1,19,4669,4644,29.39,CAAUCGGUCCUUUUCAGGACCACAAA,AB019404.1/806-831 AB073635.1/4724-4699 AB019407.1/798-823 AB073634.1/4669-4644 AB019406.1/811-836,2133-2158 2450-2425 4669-4644 652-677,0,25,AB073634.1/4669-4644
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3676,AB073634.1,1,sp|AB073634.1|AB073634 Drosophila erecta H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds.,1,20,2450,2425,27.64,AAACAAGCCCUUUUCAGGGCUACAAC,AB073634.1/2450-2425 AB073635.1/2443-2418,2133-2158 2450-2425 4669-4644 652-677,0,25,AB073634.1/2450-2425
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3676,AB073634.1,1,sp|AB073634.1|AB073634 Drosophila erecta H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds.,1,21,1085,1060,30.59,CAAACCGUCCUUUUCAGGACGACCAA,X14215.1/4806-4781,2133-2158 2450-2425 4669-4644 652-677,0,0,AB073634.1/1085-1060
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3677,AB073635.1,1,sp|AB073635.1|AB073635 Drosophila yakuba H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds; clone:Yak6.,0,22,642,667,29.25,CAAUCGGUCCUUUUCAGGACCACCAC,AB073635.1/642-667,4724-4699 642-667 2145-2170 2443-2418,0,25,AB073635.1/642-667
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3677,AB073635.1,1,sp|AB073635.1|AB073635 Drosophila yakuba H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds; clone:Yak6.,0,23,2145,2170,35.94,AAAACGGCCCUUUUCAGGGCCACAAU,AB073634.1/2133-2158 AB055959.1/2078-2103 AE003670.4/134986-134961 AB073635.1/2145-2170 X14215.1/817-842,4724-4699 642-667 2145-2170 2443-2418,0,25,AB073635.1/2145-2170
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3677,AB073635.1,1,sp|AB073635.1|AB073635 Drosophila yakuba H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds; clone:Yak6.,1,24,4724,4699,29.39,CAAUCGGUCCUUUUCAGGACCACAAA,AB019404.1/806-831 AB073635.1/4724-4699 AB019407.1/798-823 AB073634.1/4669-4644 AB019406.1/811-836,4724-4699 642-667 2145-2170 2443-2418,0,25,AB073635.1/4724-4699
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3677,AB073635.1,1,sp|AB073635.1|AB073635 Drosophila yakuba H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds; clone:Yak6.,1,25,2443,2418,27.64,AAACAAGCCCUUUUCAGGGCUACAAC,AB073634.1/2450-2425 AB073635.1/2443-2418,4724-4699 642-667 2145-2170 2443-2418,0,25,AB073635.1/2443-2418
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3677,AB073635.1,1,sp|AB073635.1|AB073635 Drosophila yakuba H4; H2A; H2B; H1 genes for histone 4; histone 2A; histone 2B; histone 1; complete cds; clone:Yak6.,1,26,1090,1065,30.59,CAAACCGUCCUUUUCAGGACGACCAA,X14215.1/4806-4781,4724-4699 642-667 2145-2170 2443-2418,0,0,AB073635.1/1090-1065
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,3773,AB076033.1,1,sp|AB076033.1|AB076033 Lymantria dispar DNA; microsatellite; locus GM741.,0,27,292,317,34.91,GAAAAGGCCCUUUUCAGGGCCACAAA,AB076033.1/292-317,292-317,0,25,AB076033.1/292-317
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5848,AC010057.7,1,sp|AC010057.7|AC010057 Drosophila melanogaster 3L BAC RP98-26C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.,1,28,36119,36094,24.77,AACACGGCCUUUUACACGGCCACCAA,****    NEW  HIT  #2  ****,,2,0,AC010057.7/36119-36094
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6008,AC016132.4,1,sp|AC016132.4|AC016132 Drosophila melanogaster; chromosome 3R; region 93D-93D; BAC clone BACR34E13; complete sequence.,1,29,92623,92598,31.13,UAAUCGGCUCUUUUAAGAGCCACCAA,AC016132.4/92623-92598 AE003734.2/218715-218690 Z29082.1/1040-1065,92623-92598,0,25,AC016132.4/92623-92598
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6124,AC024696.1,1,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7; complete sequence.,0,30,13704,13729,28.62,CCAACGGCCCUCUUUAGGGCCACAUA,U41625.1/33871-33896 AC024696.1/13704-13729 Z93388.1/29900-29875 U64845.1/23494-23469 U64843.2/18390-18365 U64843.2/11360-11385 U41625.1/32829-32804,18273-18248 16166-16191 13704-13729 15059-15034 19380-19405 12654-12629,0,25,AC024696.1/13704-13729
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6124,AC024696.1,1,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7; complete sequence.,0,31,16166,16191,32.11,CCAACGGCCCUCUUAAGGGCCACAAA,AC024696.1/18273-18248 AC024696.1/16166-16191 U64843.2/15929-15904 U64843.2/13822-13847 AC084653.1/37280-37255,18273-18248 16166-16191 13704-13729 15059-15034 19380-19405 12654-12629,0,25,AC024696.1/16166-16191
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6124,AC024696.1,1,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7; complete sequence.,0,32,19380,19405,26.63,CCAACGGCCCUCUUUAGAGCCACAAA,U64843.2/17036-17061 U64845.1/25727-25752 AC024696.1/19380-19405,18273-18248 16166-16191 13704-13729 15059-15034 19380-19405 12654-12629,0,25,AC024696.1/19380-19405
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6124,AC024696.1,1,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7; complete sequence.,1,33,18273,18248,32.11,CCAACGGCCCUCUUAAGGGCCACAAA,AC024696.1/18273-18248 AC024696.1/16166-16191 U64843.2/15929-15904 U64843.2/13822-13847 AC084653.1/37280-37255,18273-18248 16166-16191 13704-13729 15059-15034 19380-19405 12654-12629,0,25,AC024696.1/18273-18248
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6124,AC024696.1,1,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7; complete sequence.,1,34,15059,15034,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,18273-18248 16166-16191 13704-13729 15059-15034 19380-19405 12654-12629,0,25,AC024696.1/15059-15034
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6124,AC024696.1,1,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7; complete sequence.,1,35,12654,12629,29.00,CCAACGGCCCUCUUUAGGGCCACAAU,U40934.1/35214-35189 U64843.2/19437-19462 U58750.1/21630-21605 U58750.1/24532-24557 U64843.2/10310-10285 AC084502.1/6022-5997 AC024696.1/12654-12629 AF047656.1/3963-3988,18273-18248 16166-16191 13704-13729 15059-15034 19380-19405 12654-12629,0,25,AC024696.1/12654-12629
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6387,AC084502.1,1,sp|AC084502.1|AC084502 Caenorhabditis briggsae cosmid G14F21; complete sequence.,0,36,4081,4106,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,3035-3010 7086-7111 6022-5997 4081-4106,0,25,AC084502.1/4081-4106
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6387,AC084502.1,1,sp|AC084502.1|AC084502 Caenorhabditis briggsae cosmid G14F21; complete sequence.,0,37,7086,7111,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,3035-3010 7086-7111 6022-5997 4081-4106,0,25,AC084502.1/7086-7111
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6387,AC084502.1,1,sp|AC084502.1|AC084502 Caenorhabditis briggsae cosmid G14F21; complete sequence.,1,38,6022,5997,29.00,CCAACGGCCCUCUUUAGGGCCACAAU,U40934.1/35214-35189 U64843.2/19437-19462 U58750.1/21630-21605 U58750.1/24532-24557 U64843.2/10310-10285 AC084502.1/6022-5997 AC024696.1/12654-12629 AF047656.1/3963-3988,3035-3010 7086-7111 6022-5997 4081-4106,0,25,AC084502.1/6022-5997
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6387,AC084502.1,1,sp|AC084502.1|AC084502 Caenorhabditis briggsae cosmid G14F21; complete sequence.,1,39,3035,3010,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,3035-3010 7086-7111 6022-5997 4081-4106,0,25,AC084502.1/3035-3010
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6474,AC084589.1,1,sp|AC084589.1|AC084589 Caenorhabditis briggsae cosmid G41K24; complete sequence.,0,40,6075,6100,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,5032-5007 8311-8286 9378-9403 6075-6100,0,25,AC084589.1/6075-6100
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6474,AC084589.1,1,sp|AC084589.1|AC084589 Caenorhabditis briggsae cosmid G41K24; complete sequence.,0,41,9378,9403,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,5032-5007 8311-8286 9378-9403 6075-6100,0,25,AC084589.1/9378-9403
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6474,AC084589.1,1,sp|AC084589.1|AC084589 Caenorhabditis briggsae cosmid G41K24; complete sequence.,1,42,8311,8286,25.90,CCAACGGCCCUCUUUAGGGCCACAAG,AC084589.1/8311-8286,5032-5007 8311-8286 9378-9403 6075-6100,0,25,AC084589.1/8311-8286
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6474,AC084589.1,1,sp|AC084589.1|AC084589 Caenorhabditis briggsae cosmid G41K24; complete sequence.,1,43,5032,5007,27.33,CCAACGGCCCUCUUUAGGGCCACGAA,AC084589.1/5032-5007,5032-5007 8311-8286 9378-9403 6075-6100,0,25,AC084589.1/5032-5007
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6538,AC084653.1,1,sp|AC084653.1|AC084653 Caenorhabditis briggsae cosmid G45O14; complete sequence.,0,44,38344,38369,29.91,CCAACGGCCCUCUUUAGGGCCACAAC,AC084653.1/38344-38369 AF047656.1/2352-2377,38344-38369 39102-39077 37280-37255 40174-40199,0,25,AC084653.1/38344-38369
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6538,AC084653.1,1,sp|AC084653.1|AC084653 Caenorhabditis briggsae cosmid G45O14; complete sequence.,0,45,40174,40199,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,38344-38369 39102-39077 37280-37255 40174-40199,0,25,AC084653.1/40174-40199
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6538,AC084653.1,1,sp|AC084653.1|AC084653 Caenorhabditis briggsae cosmid G45O14; complete sequence.,1,46,39102,39077,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,38344-38369 39102-39077 37280-37255 40174-40199,0,25,AC084653.1/39102-39077
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6538,AC084653.1,1,sp|AC084653.1|AC084653 Caenorhabditis briggsae cosmid G45O14; complete sequence.,1,47,37280,37255,32.11,CCAACGGCCCUCUUAAGGGCCACAAA,AC024696.1/18273-18248 AC024696.1/16166-16191 U64843.2/15929-15904 U64843.2/13822-13847 AC084653.1/37280-37255,38344-38369 39102-39077 37280-37255 40174-40199,0,25,AC084653.1/37280-37255
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6624,AC091219.2,1,sp|AC091219.2|AC091219 Drosophila melanogaster 3L BAC RP98-4C3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.,1,48,75469,75444,24.77,AACACGGCCUUUUACACGGCCACCAA,****    NEW  HIT (duplicate of new hit #2)   ****,,2,0,AC091219.2/75469-75444
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7485,AE003469.3,1,sp|AE003469.3|AE003469 Drosophila melanogaster chromosome 3L; section 3 of 83 of the complete sequence.,1,49,62148,62123,24.77,AACACGGCCUUUUACACGGCCACCAA,****    NEW  HIT (duplicate of new hit #2)   ****,,2,0,AE003469.3/62148-62123
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7686,AE003670.4,1,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence.,0,50,120230,120255,30.59,CAAACCGUCCUUUUCAGGACGACCAA,X14215.1/4806-4781,134986-134961 136432-136407 137528-137553,0,0,AE003670.4/120230-120255
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7686,AE003670.4,1,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence.,0,51,121012,121037,30.59,CAAACCGUCCUUUUCAGGACGACCAA,X14215.1/4806-4781,134986-134961 136432-136407 137528-137553,0,0,AE003670.4/121012-121037
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7686,AE003670.4,1,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence.,0,52,136038,136063,30.59,CAAACCGUCCUUUUCAGGACGACCAA,X14215.1/4806-4781,134986-134961 136432-136407 137528-137553,0,0,AE003670.4/136038-136063
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7686,AE003670.4,1,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence.,0,53,137528,137553,27.74,UAAUCGGUCCUUUUCAGGACCACAAA,AB055959.1/4585-4560 X14215.1/3318-3293 X60225.1/1393-1368 AB003784.1/786-811 AB019400.1/820-845 AB019402.1/789-814 AB019403.1/787-812 AB019401.1/786-811 X13788.1/1022-997 AE003670.4/137528-137553,134986-134961 136432-136407 137528-137553,0,25,AE003670.4/137528-137553
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7686,AE003670.4,1,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence.,1,54,136432,136407,28.34,CAAUCGGUCCUUUUCAGGACCACCAU,X14215.1/4412-4437 AB073634.1/652-677 AE003670.4/136432-136407,134986-134961 136432-136407 137528-137553,0,25,AE003670.4/136432-136407
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7686,AE003670.4,1,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence.,1,55,134986,134961,35.94,AAAACGGCCCUUUUCAGGGCCACAAU,AB073634.1/2133-2158 AB055959.1/2078-2103 AE003670.4/134986-134961 AB073635.1/2145-2170 X14215.1/817-842,134986-134961 136432-136407 137528-137553,0,25,AE003670.4/134986-134961
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7750,AE003734.2,1,sp|AE003734.2|AE003734 Drosophila melanogaster chromosome 3R; section 72 of 118 of the complete sequence.,1,56,218715,218690,31.13,UAAUCGGCUCUUUUAAGAGCCACCAA,AC016132.4/92623-92598 AE003734.2/218715-218690 Z29082.1/1040-1065,218715-218690,0,25,AE003734.2/218715-218690
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,8540,AF007904.1,1,sp|AF007904.1|AF007904 Chaetopterus variopedatus histone H4 and histone H2A genes; complete cds.,0,57,709,734,28.95,AAAACGGUCCUUAUCAGGACCAAACA,AF007904.1/709-734,709-734 1311-1286,0,25,AF007904.1/709-734
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,8540,AF007904.1,1,sp|AF007904.1|AF007904 Chaetopterus variopedatus histone H4 and histone H2A genes; complete cds.,1,58,1311,1286,29.08,CCAACGGUCCUUCUCAGGACCACUAU,AF007904.1/1311-1286,709-734 1311-1286,0,25,AF007904.1/1311-1286
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11917,AF047656.1,1,sp|AF047656.1|AF047656 Caenorhabditis elegans cosmid F17E9; complete sequence.,0,59,2352,2377,29.91,CCAACGGCCCUCUUUAGGGCCACAAC,AC084653.1/38344-38369 AF047656.1/2352-2377,2893-2868 1223-1198 2352-2377 3963-3988,0,25,AF047656.1/2352-2377
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11917,AF047656.1,1,sp|AF047656.1|AF047656 Caenorhabditis elegans cosmid F17E9; complete sequence.,0,60,3963,3988,29.00,CCAACGGCCCUCUUUAGGGCCACAAU,U40934.1/35214-35189 U64843.2/19437-19462 U58750.1/21630-21605 U58750.1/24532-24557 U64843.2/10310-10285 AC084502.1/6022-5997 AC024696.1/12654-12629 AF047656.1/3963-3988,2893-2868 1223-1198 2352-2377 3963-3988,0,25,AF047656.1/3963-3988
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11917,AF047656.1,1,sp|AF047656.1|AF047656 Caenorhabditis elegans cosmid F17E9; complete sequence.,1,61,2893,2868,26.25,CCAACGGCCCUCUUUAGGGCCACAUU,U40934.1/36284-36309 Z93388.1/28191-28166 AF047656.1/2893-2868 U64845.1/21663-21638,2893-2868 1223-1198 2352-2377 3963-3988,0,25,AF047656.1/2893-2868
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11917,AF047656.1,1,sp|AF047656.1|AF047656 Caenorhabditis elegans cosmid F17E9; complete sequence.,1,62,1223,1198,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,2893-2868 1223-1198 2352-2377 3963-3988,0,25,AF047656.1/1223-1198
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16166,AF107695.1,1,sp|AF107695.1|AF107695 Aedes aegypti clone 440 Feilai family of SINES.,0,63,103,128,27.05,AAAAGGGCCCUCUUCAGGGCCACAAC,AF107695.1/103-128,103-128,0,25,AF107695.1/103-128
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26456,AF216837.1,1,sp|AF216837.1|AF216837 Drosophila virilis clone p3.6-33 histone H4 and histone H2A genes; partial cds.,0,64,90,115,30.71,CAAUCGGUCCUUUUCAGGACCACCAA,AF216838.1/90-115 AF216844.1/90-115 AF216840.1/91-116 AF216837.1/90-115 AF216842.1/90-115 X17072.1/3256-3281 AF216841.1/90-115 AF216846.1/90-115 X52576.1/3253-3278,90-115,0,25,AF216837.1/90-115
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26456,AF216837.1,1,sp|AF216837.1|AF216837 Drosophila virilis clone p3.6-33 histone H4 and histone H2A genes; partial cds.,1,65,815,790,30.68,CCAACCGUCCUUUUCAGGACGACCAA,U82926.1/121-96,90-115,0,0,AF216837.1/815-790
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26456,AF216837.1,1,sp|AF216837.1|AF216837 Drosophila virilis clone p3.6-33 histone H4 and histone H2A genes; partial cds.,1,66,384,359,24.87,CCAAGCGUCCUUUUCAGGACAACCCA,****    NEW  HIT  #5  ****,90-115,2,0,AF216837.1/384-359
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26457,AF216838.1,1,sp|AF216838.1|AF216838 Drosophila virilis clone p5.2-33 histone H4 gene; partial cds.,0,67,90,115,30.71,CAAUCGGUCCUUUUCAGGACCACCAA,AF216838.1/90-115 AF216844.1/90-115 AF216840.1/91-116 AF216837.1/90-115 AF216842.1/90-115 X17072.1/3256-3281 AF216841.1/90-115 AF216846.1/90-115 X52576.1/3253-3278,90-115,0,25,AF216838.1/90-115
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26458,AF216839.1,1,sp|AF216839.1|AF216839 Drosophila virilis clone p5.2-33 histone H2A gene; partial cds.,1,68,953,928,30.68,CCAACCGUCCUUUUCAGGACGACCAA,U82926.1/121-96,,0,0,AF216839.1/953-928
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26459,AF216840.1,1,sp|AF216840.1|AF216840 Drosophila virilis clone p5.3-33 histone H4 and histone H2A genes; partial cds.,0,69,91,116,30.71,CAAUCGGUCCUUUUCAGGACCACCAA,AF216838.1/90-115 AF216844.1/90-115 AF216840.1/91-116 AF216837.1/90-115 AF216842.1/90-115 X17072.1/3256-3281 AF216841.1/90-115 AF216846.1/90-115 X52576.1/3253-3278,91-116,0,25,AF216840.1/91-116
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26459,AF216840.1,1,sp|AF216840.1|AF216840 Drosophila virilis clone p5.3-33 histone H4 and histone H2A genes; partial cds.,1,70,816,791,30.68,CCAACCGUCCUUUUCAGGACGACCAA,U82926.1/121-96,91-116,0,0,AF216840.1/816-791
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26459,AF216840.1,1,sp|AF216840.1|AF216840 Drosophila virilis clone p5.3-33 histone H4 and histone H2A genes; partial cds.,1,71,385,360,24.87,CCAAGCGUCCUUUUCAGGACAACCCA,****    NEW  HIT (duplicate of new hit #5)   ****,91-116,2,0,AF216840.1/385-360
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26460,AF216841.1,1,sp|AF216841.1|AF216841 Drosophila virilis clone p5.9-12 histone H4 and histone H2A genes; partial cds.,0,72,90,115,30.71,CAAUCGGUCCUUUUCAGGACCACCAA,AF216838.1/90-115 AF216844.1/90-115 AF216840.1/91-116 AF216837.1/90-115 AF216842.1/90-115 X17072.1/3256-3281 AF216841.1/90-115 AF216846.1/90-115 X52576.1/3253-3278,90-115,0,25,AF216841.1/90-115
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26460,AF216841.1,1,sp|AF216841.1|AF216841 Drosophila virilis clone p5.9-12 histone H4 and histone H2A genes; partial cds.,1,73,1407,1382,30.83,CCAAACGUCCUUUUCAGGACGACCAA,X17072.1/3796-3771 X52576.1/3805-3780,90-115,0,0,AF216841.1/1407-1382
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26461,AF216842.1,1,sp|AF216842.1|AF216842 Drosophila virilis clone p7.0-33 histone H4 gene; partial cds.,0,74,90,115,30.71,CAAUCGGUCCUUUUCAGGACCACCAA,AF216838.1/90-115 AF216844.1/90-115 AF216840.1/91-116 AF216837.1/90-115 AF216842.1/90-115 X17072.1/3256-3281 AF216841.1/90-115 AF216846.1/90-115 X52576.1/3253-3278,90-115,0,25,AF216842.1/90-115
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26462,AF216843.1,1,sp|AF216843.1|AF216843 Drosophila virilis clone p7.0-33 histone H2A gene; partial cds.,1,75,1447,1422,30.83,CCAAACGUCCUUUUCAGGACGACCAA,X17072.1/3796-3771 X52576.1/3805-3780,,0,0,AF216843.1/1447-1422
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26462,AF216843.1,1,sp|AF216843.1|AF216843 Drosophila virilis clone p7.0-33 histone H2A gene; partial cds.,1,76,1016,991,28.12,CCAAACGUCCUUAUCAGGACGACCAA,****    NEW  HIT  #7  ****,,2,0,AF216843.1/1016-991
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26463,AF216844.1,1,sp|AF216844.1|AF216844 Drosophila virilis clone p7.5-4 histone H4 gene; partial cds.,0,77,90,115,30.71,CAAUCGGUCCUUUUCAGGACCACCAA,AF216838.1/90-115 AF216844.1/90-115 AF216840.1/91-116 AF216837.1/90-115 AF216842.1/90-115 X17072.1/3256-3281 AF216841.1/90-115 AF216846.1/90-115 X52576.1/3253-3278,90-115,0,25,AF216844.1/90-115
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26464,AF216845.1,1,sp|AF216845.1|AF216845 Drosophila virilis clone p7.5-4 histone H2A gene; partial cds.,1,78,1265,1240,30.83,CCAAACGUCCUUUUCAGGACGACCAA,X17072.1/3796-3771 X52576.1/3805-3780,,0,0,AF216845.1/1265-1240
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26465,AF216846.1,1,sp|AF216846.1|AF216846 Drosophila virilis clone p8.0-4 histone H4 gene; partial cds.,0,79,90,115,30.71,CAAUCGGUCCUUUUCAGGACCACCAA,AF216838.1/90-115 AF216844.1/90-115 AF216840.1/91-116 AF216837.1/90-115 AF216842.1/90-115 X17072.1/3256-3281 AF216841.1/90-115 AF216846.1/90-115 X52576.1/3253-3278,90-115,0,25,AF216846.1/90-115
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26466,AF216847.1,1,sp|AF216847.1|AF216847 Drosophila virilis clone p8.0-4 histone H2A gene; partial cds.,1,80,1168,1143,30.83,CCAAACGUCCUUUUCAGGACGACCAA,X17072.1/3796-3771 X52576.1/3805-3780,,0,0,AF216847.1/1168-1143
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,26466,AF216847.1,1,sp|AF216847.1|AF216847 Drosophila virilis clone p8.0-4 histone H2A gene; partial cds.,1,81,737,712,30.83,CCAAACGUCCUUUUCAGGACGACCAA,X17072.1/3796-3771 X52576.1/3805-3780,,0,0,AF216847.1/737-712
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,35000,AF304122.1,1,sp|AF304122.1|AF304122 Caenorhabditis elegans histone H3 (2O113) mRNA; complete cds.,0,82,482,507,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,482-507,0,25,AF304122.1/482-507
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,39802,AF356516.1,1,sp|AF356516.1|AF356516 Tetrapygus niger early histone H2B and early histone H3 genes; partial cds.,0,83,55,80,38.18,CAAACGGCCCUUUUCAGGGCCACAAA,AF356516.1/55-80,55-80,0,25,AF356516.1/55-80
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41779,AF378198.1,1,sp|AF378198.1|AF378198 Rhynchosciara americana histone H1 (rah1); histone H3 (rah3); histone H4 (rah4); histone H2A (rah2a); and histone H2B (rah2b) g,0,84,4387,4412,37.88,CAAAAGGCUCUUUUCAGAGCCACCAU,AF378198.1/4387-4412,1874-1849 3375-3350 4387-4412,0,25,AF378198.1/4387-4412
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41779,AF378198.1,1,sp|AF378198.1|AF378198 Rhynchosciara americana histone H1 (rah1); histone H3 (rah3); histone H4 (rah4); histone H2A (rah2a); and histone H2B (rah2b) g,1,85,3375,3350,28.79,GAAAACGCCCUUUUAAGGGCGACCAA,AF378198.1/3375-3350,1874-1849 3375-3350 4387-4412,0,25,AF378198.1/3375-3350
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41779,AF378198.1,1,sp|AF378198.1|AF378198 Rhynchosciara americana histone H1 (rah1); histone H3 (rah3); histone H4 (rah4); histone H2A (rah2a); and histone H2B (rah2b) g,1,86,1874,1849,28.71,UAACCGGUCCUUUUCAGGACCAACAA,AF378198.1/1874-1849,1874-1849 3375-3350 4387-4412,0,25,AF378198.1/1874-1849
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,4139,AF496623.1,1,sp|AF496623.1|AF496623 Crassostrea gigas clone a068 microsatellite sequence.,1,87,449,424,32.91,AAAAAAGCCCUUUUCAGGGCUACCCA,AF496624.1/451-426 AF496625.1/455-430 AF496626.1/460-435 AF496623.1/449-424,449-424,0,25,AF496623.1/449-424
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,4140,AF496624.1,1,sp|AF496624.1|AF496624 Crassostrea gigas clone OysterA#23 microsatellite sequence.,1,88,451,426,32.91,AAAAAAGCCCUUUUCAGGGCUACCCA,AF496624.1/451-426 AF496625.1/455-430 AF496626.1/460-435 AF496623.1/449-424,451-426,0,25,AF496624.1/451-426
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,4141,AF496625.1,1,sp|AF496625.1|AF496625 Crassostrea gigas clone OysterA#29 microsatellite sequence.,1,89,455,430,32.91,AAAAAAGCCCUUUUCAGGGCUACCCA,AF496624.1/451-426 AF496625.1/455-430 AF496626.1/460-435 AF496623.1/449-424,455-430,0,25,AF496625.1/455-430
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,4142,AF496626.1,1,sp|AF496626.1|AF496626 Crassostrea gigas clone a076 microsatellite sequence.,1,90,460,435,32.91,AAAAAAGCCCUUUUCAGGGCUACCCA,AF496624.1/451-426 AF496625.1/455-430 AF496626.1/460-435 AF496623.1/449-424,460-435,0,25,AF496626.1/460-435
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,7834,L11067.1,1,sp|L11067.1|AFH342BA Acropora formosa histone H3 (H3); histone H2B (H2B); histone H2A (H2A); and histone H4 (H4) genes; complete cds.,0,91,431,456,26.70,AAAACGGCUCUUUUAAGAGCACCAAU,L11067.1/431-456 M60509.1/431-456 S67324.1/431-456,431-456 2585-2610 3159-3134 1432-1407,0,25,L11067.1/431-456
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,7834,L11067.1,1,sp|L11067.1|AFH342BA Acropora formosa histone H3 (H3); histone H2B (H2B); histone H2A (H2A); and histone H4 (H4) genes; complete cds.,0,92,2585,2610,25.53,AAAACGGCUCUUGUAGGAGCCACCAC,L11067.1/2585-2610 S67324.1/2585-2610,431-456 2585-2610 3159-3134 1432-1407,0,25,L11067.1/2585-2610
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,7834,L11067.1,1,sp|L11067.1|AFH342BA Acropora formosa histone H3 (H3); histone H2B (H2B); histone H2A (H2A); and histone H4 (H4) genes; complete cds.,1,93,3159,3134,27.07,AAAACGGCUCUUAUAGGAGCCAACAA,S67324.1/3159-3134 L11067.1/3159-3134,431-456 2585-2610 3159-3134 1432-1407,0,25,L11067.1/3159-3134
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,7834,L11067.1,1,sp|L11067.1|AFH342BA Acropora formosa histone H3 (H3); histone H2B (H2B); histone H2A (H2A); and histone H4 (H4) genes; complete cds.,1,94,1432,1407,28.40,ACAACGGCUCUUUUAGGAGCCAACAC,S67324.1/1432-1407 L11067.1/1432-1407,431-456 2585-2610 3159-3134 1432-1407,0,25,L11067.1/1432-1407
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,7835,M60509.1,1,sp|M60509.1|AFH3AA Acropora formosa histone H3 protein (H3) gene; complete cds.,0,95,431,456,26.70,AAAACGGCUCUUUUAAGAGCACCAAU,L11067.1/431-456 M60509.1/431-456 S67324.1/431-456,431-456,0,25,M60509.1/431-456
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,9414,AK113063.1,1,sp|AK113063.1|AK113063 Ciona intestinalis cDNA; clone:ciad003h11; full insert sequence.,0,96,964,989,27.51,AAAUCGGCCCUUUUCAGGGCCAACCU,AK113063.1/964-989,964-989,0,25,AK113063.1/964-989
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,11693,AK115342.1,1,sp|AK115342.1|AK115342 Ciona intestinalis cDNA; clone:cieg046b21; full insert sequence.,0,97,725,750,37.97,AAAACGGCUCUUUUCAGAGCCACCCC,AK115342.1/725-750,725-750,0,25,AK115342.1/725-750
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,15072,X14816.1,1,sp|X14816.1|ASRN5SB Artemia gene for 5S rRNA (pArt5H-b); I,0,98,125,150,30.83,CCAACAGCCCUUUUAAGGGCUACAAA,X14815.1/141-166 X14816.1/125-150,125-150,0,25,X14816.1/125-150
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,15073,X14815.1,1,sp|X14815.1|ASRN5SC Artemia gene for 5S rRNA (pArt5H-a),0,99,141,166,30.83,CCAACAGCCCUUUUAAGGGCUACAAA,X14815.1/141-166 X14816.1/125-150,141-166,0,25,X14815.1/141-166
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,16171,AY013575.1,1,sp|AY013575.1|AY013575 Haliotis kamtschatkana clone Hka37 microsatellite sequence.,0,100,129,154,38.80,CCAACGGCCCUUUUCAGGGCCACCCA,AY013575.1/129-154,129-154,0,25,AY013575.1/129-154
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,16176,AY013580.1,1,sp|AY013580.1|AY013580 Haliotis kamtschatkana clone Hka6 microsatellite sequence.,0,101,296,321,39.50,CAAACGGCCCUUUUCAGGGCCACCAA,AJ492924.1/1209-1184 AJ492923.1/1793-1768 AY013580.1/296-321,296-321,0,25,AY013580.1/296-321
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,16795,AY028698.1,1,sp|AY028698.1|AY028698 Trichinella spiralis histone H3 mRNA; complete cds.,0,102,489,514,29.86,CCAACGGUCCUUAUCAGGACCACUAU,AY028698.1/489-514,489-514,0,25,AY028698.1/489-514
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,21762,AY064471.1,1,sp|AY064471.1|AY064471 Aplysia californica histone H4 (His.H4) gene; complete cds.,0,103,461,486,32.19,AAACCGGCCCUUUUAAGGGCCACAAC,AY064471.1/461-486,461-486,0,25,AY064471.1/461-486
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,21763,AY064472.1,1,sp|AY064472.1|AY064472 Aplysia californica histone H3 (His.H3) gene; complete cds.,0,104,581,606,25.04,CGAACGGUCCUUUUCAGGACCAAACC,AY064472.1/581-606,581-606,0,25,AY064472.1/581-606
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,42709,U21211.1,1,sp|U21211.1|CD21211 Chironomus dorsalis histone H1-I gene; complete cds.,0,105,897,922,24.76,AAAUCAGUCCUUUUCAGGACUACCAA,U21211.1/897-922 L29105.1/1734-1759,897-922,0,25,U21211.1/897-922
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43096,Z73102.1,1,sp|Z73102.1|CEB0035 Caenorhabditis elegans cosmid B0035,0,106,30858,30883,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,31688-31663 32759-32784 30858-30883,0,25,Z73102.1/30858-30883
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43096,Z73102.1,1,sp|Z73102.1|CEB0035 Caenorhabditis elegans cosmid B0035,0,107,32759,32784,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,31688-31663 32759-32784 30858-30883,0,25,Z73102.1/32759-32784
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43096,Z73102.1,1,sp|Z73102.1|CEB0035 Caenorhabditis elegans cosmid B0035,1,108,31688,31663,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,31688-31663 32759-32784 30858-30883,0,25,Z73102.1/31688-31663
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43336,U41556.2,1,sp|U41556.2|CEC25B8 Caenorhabditis elegans cosmid C25B8; complete sequence.,0,109,2872,2897,25.69,CAAACAGCACUUUUCAGGGCAAACAA,****    NEW  HIT  #8  ****,,2,0,U41556.2/2872-2897
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43616,L39939.1,1,sp|L39939.1|CECPR6G Caenorhabditis elegans cathepsin B-like cysteine proteinase (cpr-6) gene; complete cds.,0,110,906,931,25.69,CAAACAGCACUUUUCAGGGCAAACAA,****    NEW  HIT (duplicate of new hit #8)   ****,,2,0,L39939.1/906-931
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43756,Z81495.1,1,sp|Z81495.1|CEF08G2 Caenorhabditis elegans cosmid F08G2,0,111,1558,1583,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,516-491 1558-1583 2059-2034,0,25,Z81495.1/1558-1583
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43756,Z81495.1,1,sp|Z81495.1|CEF08G2 Caenorhabditis elegans cosmid F08G2,1,112,2059,2034,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,516-491 1558-1583 2059-2034,0,25,Z81495.1/2059-2034
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43756,Z81495.1,1,sp|Z81495.1|CEF08G2 Caenorhabditis elegans cosmid F08G2,1,113,516,491,30.57,CCAACGGCCCUCUUUAGGGCCACACA,Z81495.1/516-491 Z83245.4/28359-28384 Z83245.4/24921-24946,516-491 1558-1583 2059-2034,0,25,Z81495.1/516-491
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43895,Z68336.1,1,sp|Z68336.1|CEF22B3 Caenorhabditis elegans cosmid F22B3,0,114,2086,2111,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,1017-992 2086-2111,0,25,Z68336.1/2086-2111
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43895,Z68336.1,1,sp|Z68336.1|CEF22B3 Caenorhabditis elegans cosmid F22B3,1,115,1017,992,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,1017-992 2086-2111,0,25,Z68336.1/1017-992
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44015,U40934.1,1,sp|U40934.1|CEF35H10 Caenorhabditis elegans cosmid F35H10; complete sequence.,0,116,36284,36309,26.25,CCAACGGCCCUCUUUAGGGCCACAUU,U40934.1/36284-36309 Z93388.1/28191-28166 AF047656.1/2893-2868 U64845.1/21663-21638,36284-36309 35214-35189,0,25,U40934.1/36284-36309
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44015,U40934.1,1,sp|U40934.1|CEF35H10 Caenorhabditis elegans cosmid F35H10; complete sequence.,1,117,35214,35189,29.00,CCAACGGCCCUCUUUAGGGCCACAAU,U40934.1/35214-35189 U64843.2/19437-19462 U58750.1/21630-21605 U58750.1/24532-24557 U64843.2/10310-10285 AC084502.1/6022-5997 AC024696.1/12654-12629 AF047656.1/3963-3988,36284-36309 35214-35189,0,25,U40934.1/35214-35189
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44198,Z82271.1,1,sp|Z82271.1|CEF54E12 Caenorhabditis elegans cosmid F54E12,0,118,5216,5241,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,4145-4120 7169-7194 5216-5241 6046-6021,0,25,Z82271.1/5216-5241
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44198,Z82271.1,1,sp|Z82271.1|CEF54E12 Caenorhabditis elegans cosmid F54E12,0,119,7169,7194,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,4145-4120 7169-7194 5216-5241 6046-6021,0,25,Z82271.1/7169-7194
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44198,Z82271.1,1,sp|Z82271.1|CEF54E12 Caenorhabditis elegans cosmid F54E12,1,120,6046,6021,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,4145-4120 7169-7194 5216-5241 6046-6021,0,25,Z82271.1/6046-6021
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44198,Z82271.1,1,sp|Z82271.1|CEF54E12 Caenorhabditis elegans cosmid F54E12,1,121,4145,4120,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,4145-4120 7169-7194 5216-5241 6046-6021,0,25,Z82271.1/4145-4120
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44221,U58750.1,1,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1; complete sequence.,0,122,22772,22797,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,22772-22797 21630-21605 23463-23438 24532-24557,0,25,U58750.1/22772-22797
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44221,U58750.1,1,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1; complete sequence.,0,123,24532,24557,29.00,CCAACGGCCCUCUUUAGGGCCACAAU,U40934.1/35214-35189 U64843.2/19437-19462 U58750.1/21630-21605 U58750.1/24532-24557 U64843.2/10310-10285 AC084502.1/6022-5997 AC024696.1/12654-12629 AF047656.1/3963-3988,22772-22797 21630-21605 23463-23438 24532-24557,0,25,U58750.1/24532-24557
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44221,U58750.1,1,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1; complete sequence.,1,124,23463,23438,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,22772-22797 21630-21605 23463-23438 24532-24557,0,25,U58750.1/23463-23438
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44221,U58750.1,1,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1; complete sequence.,1,125,21630,21605,29.00,CCAACGGCCCUCUUUAGGGCCACAAU,U40934.1/35214-35189 U64843.2/19437-19462 U58750.1/21630-21605 U58750.1/24532-24557 U64843.2/10310-10285 AC084502.1/6022-5997 AC024696.1/12654-12629 AF047656.1/3963-3988,22772-22797 21630-21605 23463-23438 24532-24557,0,25,U58750.1/21630-21605
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44315,Z92789.1,1,sp|Z92789.1|CEH02I12 Caenorhabditis elegans fosmid H02I12,0,126,30206,30231,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,29083-29058 30206-30231,0,25,Z92789.1/30206-30231
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44315,Z92789.1,1,sp|Z92789.1|CEH02I12 Caenorhabditis elegans fosmid H02I12,1,127,29083,29058,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,29083-29058 30206-30231,0,25,Z92789.1/29083-29058
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44364,X15634.1,1,sp|X15634.1|CEHIS10 C. elegans core histone genes H4(his-10) and H3(his-9),0,128,1233,1258,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,151-126 1233-1258,0,25,X15634.1/1233-1258
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44364,X15634.1,1,sp|X15634.1|CEHIS10 C. elegans core histone genes H4(his-10) and H3(his-9),1,129,151,126,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,151-126 1233-1258,0,25,X15634.1/151-126
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44365,X15633.1,1,sp|X15633.1|CEHIS12 C. elegans core histone genes H2A(his12) and H2B(his11),1,130,174,149,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,174-149,0,25,X15633.1/174-149
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44425,U41625.1,1,sp|U41625.1|CEK03A1 Caenorhabditis elegans cosmid K03A1; complete sequence.,0,131,33871,33896,28.62,CCAACGGCCCUCUUUAGGGCCACAUA,U41625.1/33871-33896 AC024696.1/13704-13729 Z93388.1/29900-29875 U64845.1/23494-23469 U64843.2/18390-18365 U64843.2/11360-11385 U41625.1/32829-32804,33871-33896 32829-32804,0,25,U41625.1/33871-33896
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44425,U41625.1,1,sp|U41625.1|CEK03A1 Caenorhabditis elegans cosmid K03A1; complete sequence.,1,132,32829,32804,28.62,CCAACGGCCCUCUUUAGGGCCACAUA,U41625.1/33871-33896 AC024696.1/13704-13729 Z93388.1/29900-29875 U64845.1/23494-23469 U64843.2/18390-18365 U64843.2/11360-11385 U41625.1/32829-32804,33871-33896 32829-32804,0,25,U41625.1/32829-32804
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45149,Z93388.1,1,sp|Z93388.1|CET10C6 Caenorhabditis elegans cosmid T10C6,0,133,29299,29324,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,28191-28166 29900-29875 29299-29324 30949-30974,0,25,Z93388.1/29299-29324
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45149,Z93388.1,1,sp|Z93388.1|CET10C6 Caenorhabditis elegans cosmid T10C6,0,134,30949,30974,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,28191-28166 29900-29875 29299-29324 30949-30974,0,25,Z93388.1/30949-30974
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45149,Z93388.1,1,sp|Z93388.1|CET10C6 Caenorhabditis elegans cosmid T10C6,1,135,29900,29875,28.62,CCAACGGCCCUCUUUAGGGCCACAUA,U41625.1/33871-33896 AC024696.1/13704-13729 Z93388.1/29900-29875 U64845.1/23494-23469 U64843.2/18390-18365 U64843.2/11360-11385 U41625.1/32829-32804,28191-28166 29900-29875 29299-29324 30949-30974,0,25,Z93388.1/29900-29875
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45149,Z93388.1,1,sp|Z93388.1|CET10C6 Caenorhabditis elegans cosmid T10C6,1,136,28191,28166,26.25,CCAACGGCCCUCUUUAGGGCCACAUU,U40934.1/36284-36309 Z93388.1/28191-28166 AF047656.1/2893-2868 U64845.1/21663-21638,28191-28166 29900-29875 29299-29324 30949-30974,0,25,Z93388.1/28191-28166
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45244,Z81128.2,1,sp|Z81128.2|CET23D8 Caenorhabditis elegans cosmid T23D8,1,137,25556,25531,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,25556-25531,0,25,Z81128.2/25556-25531
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45583,U64845.1,1,sp|U64845.1|CEUF45F2 Caenorhabditis elegans cosmid F45F2; complete sequence.,0,138,24542,24567,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,25727-25752 23494-23469 21663-21638 24542-24567,0,25,U64845.1/24542-24567
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45583,U64845.1,1,sp|U64845.1|CEUF45F2 Caenorhabditis elegans cosmid F45F2; complete sequence.,0,139,25727,25752,26.63,CCAACGGCCCUCUUUAGAGCCACAAA,U64843.2/17036-17061 U64845.1/25727-25752 AC024696.1/19380-19405,25727-25752 23494-23469 21663-21638 24542-24567,0,25,U64845.1/25727-25752
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45583,U64845.1,1,sp|U64845.1|CEUF45F2 Caenorhabditis elegans cosmid F45F2; complete sequence.,1,140,23494,23469,28.62,CCAACGGCCCUCUUUAGGGCCACAUA,U41625.1/33871-33896 AC024696.1/13704-13729 Z93388.1/29900-29875 U64845.1/23494-23469 U64843.2/18390-18365 U64843.2/11360-11385 U41625.1/32829-32804,25727-25752 23494-23469 21663-21638 24542-24567,0,25,U64845.1/23494-23469
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45583,U64845.1,1,sp|U64845.1|CEUF45F2 Caenorhabditis elegans cosmid F45F2; complete sequence.,1,141,21663,21638,26.25,CCAACGGCCCUCUUUAGGGCCACAUU,U40934.1/36284-36309 Z93388.1/28191-28166 AF047656.1/2893-2868 U64845.1/21663-21638,25727-25752 23494-23469 21663-21638 24542-24567,0,25,U64845.1/21663-21638
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45609,U64843.2,1,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4; complete sequence.,0,142,11360,11385,28.62,CCAACGGCCCUCUUUAGGGCCACAUA,U41625.1/33871-33896 AC024696.1/13704-13729 Z93388.1/29900-29875 U64845.1/23494-23469 U64843.2/18390-18365 U64843.2/11360-11385 U41625.1/32829-32804,17036-17061 12715-12690 19437-19462 15929-15904 18390-18365 11360-11385 10310-10285 13822-13847,0,25,U64843.2/11360-11385
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45609,U64843.2,1,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4; complete sequence.,0,143,13822,13847,32.11,CCAACGGCCCUCUUAAGGGCCACAAA,AC024696.1/18273-18248 AC024696.1/16166-16191 U64843.2/15929-15904 U64843.2/13822-13847 AC084653.1/37280-37255,17036-17061 12715-12690 19437-19462 15929-15904 18390-18365 11360-11385 10310-10285 13822-13847,0,25,U64843.2/13822-13847
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45609,U64843.2,1,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4; complete sequence.,0,144,17036,17061,26.63,CCAACGGCCCUCUUUAGAGCCACAAA,U64843.2/17036-17061 U64845.1/25727-25752 AC024696.1/19380-19405,17036-17061 12715-12690 19437-19462 15929-15904 18390-18365 11360-11385 10310-10285 13822-13847,0,25,U64843.2/17036-17061
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45609,U64843.2,1,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4; complete sequence.,0,145,19437,19462,29.00,CCAACGGCCCUCUUUAGGGCCACAAU,U40934.1/35214-35189 U64843.2/19437-19462 U58750.1/21630-21605 U58750.1/24532-24557 U64843.2/10310-10285 AC084502.1/6022-5997 AC024696.1/12654-12629 AF047656.1/3963-3988,17036-17061 12715-12690 19437-19462 15929-15904 18390-18365 11360-11385 10310-10285 13822-13847,0,25,U64843.2/19437-19462
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45609,U64843.2,1,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4; complete sequence.,1,146,18390,18365,28.62,CCAACGGCCCUCUUUAGGGCCACAUA,U41625.1/33871-33896 AC024696.1/13704-13729 Z93388.1/29900-29875 U64845.1/23494-23469 U64843.2/18390-18365 U64843.2/11360-11385 U41625.1/32829-32804,17036-17061 12715-12690 19437-19462 15929-15904 18390-18365 11360-11385 10310-10285 13822-13847,0,25,U64843.2/18390-18365
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45609,U64843.2,1,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4; complete sequence.,1,147,15929,15904,32.11,CCAACGGCCCUCUUAAGGGCCACAAA,AC024696.1/18273-18248 AC024696.1/16166-16191 U64843.2/15929-15904 U64843.2/13822-13847 AC084653.1/37280-37255,17036-17061 12715-12690 19437-19462 15929-15904 18390-18365 11360-11385 10310-10285 13822-13847,0,25,U64843.2/15929-15904
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45609,U64843.2,1,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4; complete sequence.,1,148,12715,12690,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,17036-17061 12715-12690 19437-19462 15929-15904 18390-18365 11360-11385 10310-10285 13822-13847,0,25,U64843.2/12715-12690
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45609,U64843.2,1,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4; complete sequence.,1,149,10310,10285,29.00,CCAACGGCCCUCUUUAGGGCCACAAU,U40934.1/35214-35189 U64843.2/19437-19462 U58750.1/21630-21605 U58750.1/24532-24557 U64843.2/10310-10285 AC084502.1/6022-5997 AC024696.1/12654-12629 AF047656.1/3963-3988,17036-17061 12715-12690 19437-19462 15929-15904 18390-18365 11360-11385 10310-10285 13822-13847,0,25,U64843.2/10310-10285
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,0,150,24921,24946,30.57,CCAACGGCCCUCUUUAGGGCCACACA,Z81495.1/516-491 Z83245.4/28359-28384 Z83245.4/24921-24946,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/24921-24946
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,0,151,26816,26841,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/26816-26841
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,0,152,28359,28384,30.57,CCAACGGCCCUCUUUAGGGCCACACA,Z81495.1/516-491 Z83245.4/28359-28384 Z83245.4/24921-24946,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/28359-28384
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,0,153,30254,30279,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/30254-30279
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,0,154,32028,32053,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/32028-32053
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,1,155,30945,30920,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/30945-30920
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,1,156,29171,29146,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/29171-29146
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,1,157,27317,27292,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/27317-27292
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,1,158,25733,25708,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/25733-25708
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46145,Z83245.4,1,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131,1,159,23879,23854,31.37,CCAACGGCCCUCUUUAGGGCCACAAA,U58750.1/22772-22797 AC084502.1/3035-3010 Z68336.1/1017-992 Z92789.1/29083-29058 Z82271.1/4145-4120 Z73102.1/31688-31663 Z83245.4/30945-30920 Z82271.1/7169-7194 X15634.1/151-126 U64843.2/12715-12690 X15634.1/1233-1258 X15633.1/174-149 Z83245.4/32028-32053 Z73102.1/32759-32784 Z93388.1/29299-29324 AC084653.1/39102-39077 AC024696.1/15059-15034 Z83245.4/27317-27292 Z93388.1/30949-30974 Z83245.4/25733-25708 AF047656.1/1223-1198 Z83245.4/30254-30279 U58750.1/23463-23438 Z82271.1/5216-5241 Z81495.1/1558-1583 U64845.1/24542-24567 AF304122.1/482-507 Z83245.4/26816-26841 Z83245.4/29171-29146 Z73102.1/30858-30883 AC084589.1/9378-9403 AC084502.1/7086-7111 Z68336.1/2086-2111 Z81128.2/25556-25531 Z81495.1/2059-2034 Z83245.4/23879-23854 Z82271.1/6046-6021 AC084589.1/6075-6100 AC084653.1/40174-40199 AC084502.1/4081-4106 Z92789.1/30206-30231,30945-30920 32028-32053 27317-27292 25733-25708 30254-30279 28359-28384 26816-26841 29171-29146 24921-24946 23879-23854,0,25,Z83245.4/23879-23854
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,47624,L28726.1,1,sp|L28726.1|CTHHI1A Chironomus thummi piger histone H1-III-1 gene; complete CDS.,0,160,1034,1059,25.70,AAAAUAGUCCUUUUCAGGACUACCAA,L28726.1/1034-1059,1034-1059,0,25,L28726.1/1034-1059
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,47635,L29105.1,1,sp|L29105.1|CTHIH1E Chironomus tentans (clone EStent1) histone H1e gene; complete cds.,0,161,1734,1759,24.76,AAAUCAGUCCUUUUCAGGACUACCAA,U21211.1/897-922 L29105.1/1734-1759,1734-1759,0,25,L29105.1/1734-1759
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,47636,X72803.1,1,sp|X72803.1|CTHIS C.thummi genes for histones H1; H2A; H3 and H4,0,162,5789,5814,33.84,UAAAAGGUCCUUUUCAGGACCACAAA,X72803.1/5789-5814,5789-5814,0,25,X72803.1/5789-5814
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,47636,X72803.1,1,sp|X72803.1|CTHIS C.thummi genes for histones H1; H2A; H3 and H4,1,163,4558,4533,26.48,AAAAAGGUCUUUUUAAAGACCAACAA,****    NEW  HIT  #10  ****,5789-5814,2,0,X72803.1/4558-4533
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,47637,X56335.1,1,sp|X56335.1|CTHIST Chironomus thummi histone H1; H2A; H2B; H3; H4 genes with TFB1 insertion (foldback transposable element),1,164,3095,3070,25.50,UAAACCGUCCUUUUUAGGGCGACCAA,****    NEW  HIT  #11  ****,,2,0,X56335.1/3095-3070
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,47637,X56335.1,1,sp|X56335.1|CTHIST Chironomus thummi histone H1; H2A; H2B; H3; H4 genes with TFB1 insertion (foldback transposable element),1,165,1269,1244,25.67,AGAACGGUCUUUUUCAAGACCACCAA,****    NEW  HIT  #12  ****,,2,0,X56335.1/1269-1244
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49325,X52576.1,1,sp|X52576.1|DHHIST D. HYDEI HISTONE GENES,0,166,3253,3278,30.71,CAAUCGGUCCUUUUCAGGACCACCAA,AF216838.1/90-115 AF216844.1/90-115 AF216840.1/91-116 AF216837.1/90-115 AF216842.1/90-115 X17072.1/3256-3281 AF216841.1/90-115 AF216846.1/90-115 X52576.1/3253-3278,4864-4889 2136-2111 3805-3780 3253-3278,0,25,X52576.1/3253-3278
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49325,X52576.1,1,sp|X52576.1|DHHIST D. HYDEI HISTONE GENES,0,167,4864,4889,29.79,CAAAAGGCCCUUAUCAGGGCCUCAAA,X52576.1/4864-4889,4864-4889 2136-2111 3805-3780 3253-3278,0,25,X52576.1/4864-4889
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49325,X52576.1,1,sp|X52576.1|DHHIST D. HYDEI HISTONE GENES,1,168,3805,3780,30.83,CCAAACGUCCUUUUCAGGACGACCAA,X17072.1/3796-3771 X52576.1/3805-3780,4864-4889 2136-2111 3805-3780 3253-3278,0,25,X52576.1/3805-3780
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49325,X52576.1,1,sp|X52576.1|DHHIST D. HYDEI HISTONE GENES,1,169,2136,2111,27.14,AAAUCGGUCCUUUUCAGGACCACAAU,X17072.1/2137-2112 X52576.1/2136-2111,4864-4889 2136-2111 3805-3780 3253-3278,0,25,X52576.1/2136-2111
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49326,X17072.1,1,sp|X17072.1|DHHISTON Drosophila hydei histone DNA repeat unit with genes for histones H1; H3; H4; H2A and H2B,0,170,3256,3281,30.71,CAAUCGGUCCUUUUCAGGACCACCAA,AF216838.1/90-115 AF216844.1/90-115 AF216840.1/91-116 AF216837.1/90-115 AF216842.1/90-115 X17072.1/3256-3281 AF216841.1/90-115 AF216846.1/90-115 X52576.1/3253-3278,3796-3771 2137-2112 3256-3281 4855-4880,0,25,X17072.1/3256-3281
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49326,X17072.1,1,sp|X17072.1|DHHISTON Drosophila hydei histone DNA repeat unit with genes for histones H1; H3; H4; H2A and H2B,0,171,4855,4880,38.33,CAAAAGGCCCUUUUCAGGGCCACAAA,U88330.1/253-278 U88331.1/251-276 X17072.1/4855-4880,3796-3771 2137-2112 3256-3281 4855-4880,0,25,X17072.1/4855-4880
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49326,X17072.1,1,sp|X17072.1|DHHISTON Drosophila hydei histone DNA repeat unit with genes for histones H1; H3; H4; H2A and H2B,1,172,3796,3771,30.83,CCAAACGUCCUUUUCAGGACGACCAA,X17072.1/3796-3771 X52576.1/3805-3780,3796-3771 2137-2112 3256-3281 4855-4880,0,25,X17072.1/3796-3771
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49326,X17072.1,1,sp|X17072.1|DHHISTON Drosophila hydei histone DNA repeat unit with genes for histones H1; H3; H4; H2A and H2B,1,173,2137,2112,27.14,AAAUCGGUCCUUUUCAGGACCACAAU,X17072.1/2137-2112 X52576.1/2136-2111,3796-3771 2137-2112 3256-3281 4855-4880,0,25,X17072.1/2137-2112
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49447,X07772.1,1,sp|X07772.1|DIHIST43 Sea star (D.imbricata) histone H4 3' flanking region,0,174,25,50,33.97,AAAACGGCUCUAUUCAGAGCCACCAC,X07772.1/25-50,25-50,0,25,X07772.1/25-50
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,2833,X60225.1,1,sp|X60225.1|DMH1H3 D.melanogaster Histone H1-H3 intergenic spacer,1,175,1393,1368,27.74,UAAUCGGUCCUUUUCAGGACCACAAA,AB055959.1/4585-4560 X14215.1/3318-3293 X60225.1/1393-1368 AB003784.1/786-811 AB019400.1/820-845 AB019402.1/789-814 AB019403.1/787-812 AB019401.1/786-811 X13788.1/1022-997 AE003670.4/137528-137553,1393-1368,0,25,X60225.1/1393-1368
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,2891,X13788.1,1,sp|X13788.1|DMHISIG D.melanogaster DNA for histone gene cluster intergenic spacer,1,176,1022,997,27.74,UAAUCGGUCCUUUUCAGGACCACAAA,AB055959.1/4585-4560 X14215.1/3318-3293 X60225.1/1393-1368 AB003784.1/786-811 AB019400.1/820-845 AB019402.1/789-814 AB019403.1/787-812 AB019401.1/786-811 X13788.1/1022-997 AE003670.4/137528-137553,1022-997,0,25,X13788.1/1022-997
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,2893,X14215.1,1,sp|X14215.1|DMHISTL Drosophila histone gene cluster; L form of repeating unit (5 kB),0,177,817,842,35.94,AAAACGGCCCUUUUCAGGGCCACAAU,AB073634.1/2133-2158 AB055959.1/2078-2103 AE003670.4/134986-134961 AB073635.1/2145-2170 X14215.1/817-842,4412-4437 3318-3293 4806-4781 817-842,0,25,X14215.1/817-842
./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00032.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,2893,X14215.1,1,sp|X14215.1|DMHISTL Drosophila histone gene cluster; L form of repeating unit (5 kB),0,178,4412,4437,28.34,CAAUCGGUCCUUUUCAGGACCACCAU,X14215.1/4412-4437 AB07