Params: ./cmzasha --no-stderr --filter 30 24.76 Rfam/cm/RF00032.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00032_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: recycle.cs.washington.edu ----cmFile: Rfam/cm/RF00032.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #1673,sp|AB027323.1|AB027323 Cordyceps paradoxa DNA for 18S ribosomal RNA. ----isReversed: 1 ----hitSequence: AACAGGGCCCUUUUCAGGGCCCCCUC hit 0 : 2240 2215 (rev) 25.29 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+ A GGC:CUUUUCAG:GCC CC 397 AACAGGGCCCUUUUCAGGGCCCCCUC 422 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #140,sp|AJ238321.1|AAQ238321 Asellus aquaticus 5S rRNA gene, histone H2B, histone H2A, histone H3 and histone H4. ----isReversed: 0 ----hitSequence: CAAAAGGGUCUAUUUAGACCCACAAA hit 1 : 3588 3613 (fwd) 26.17 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AAAGG UCU UU AGA CCAC AA 3588 CAAAAGGGUCUAUUUAGACCCACAAA 3613 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #140,sp|AJ238321.1|AAQ238321 Asellus aquaticus 5S rRNA gene, histone H2B, histone H2A, histone H3 and histone H4. ----isReversed: 1 ----hitSequence: AAAAAGGCCCUAUUUAGGGCCAAAUA hit 2 : 2546 2521 (rev) 25.79 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AAAGGC:CU UU AG:GCCA A 4008 AAAAAGGCCCUAUUUAGGGCCAAAUA 4033 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #289,sp|AB002280.1|AB002280 Bombyx mori L1Bm DNA, non-LTR retrotransposon. ----isReversed: 0 ----hitSequence: CAAAAGGCCCUUUUCAGGGCCGCAAA hit 3 : 288 313 (fwd) 32.50 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AAAGGC:CUUUUCAG:GCC C AA 288 CAAAAGGCCCUUUUCAGGGCCGCAAA 313 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #289,sp|AB002280.1|AB002280 Bombyx mori L1Bm DNA, non-LTR retrotransposon. ----isReversed: 0 ----hitSequence: CCAACUGCCUUUUUCAAGGCAACCAA hit 4 : 996 1021 (fwd) 27.46 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+:GC::UUUUCA::GC:ACCAA 996 CCAACUGCCUUUUUCAAGGCAACCAA 1021 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #290,sp|AB002281.1|AB002281 Bombyx mori L1Bm DNA, non-LTR retrotransposon. ----isReversed: 0 ----hitSequence: CAAAAGGACCUUUUAAGGGCCGCAAA hit 5 : 292 317 (fwd) 25.27 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AAAGG::CUUUU AG::CC C AA 292 CAAAAGGACCUUUUAAGGGCCGCAAA 317 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #1061,sp|AB019400.1|AB019400 Drosophila melanogaster gene for histone H3, complete cds. ----isReversed: 0 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 6 : 820 845 (fwd) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 820 UAAUCGGUCCUUUUCAGGACCACAAA 845 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #1062,sp|AB019401.1|AB019401 Drosophila simulans gene for histone H3, complete cds. ----isReversed: 0 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 7 : 786 811 (fwd) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 786 UAAUCGGUCCUUUUCAGGACCACAAA 811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #1063,sp|AB019402.1|AB019402 Drosophila sechellia gene for histone H3, complete cds. ----isReversed: 0 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 8 : 789 814 (fwd) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 789 UAAUCGGUCCUUUUCAGGACCACAAA 814 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #1064,sp|AB019403.1|AB019403 Drosophila mauritiana gene for histone H3, complete cds. ----isReversed: 0 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 9 : 787 812 (fwd) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 787 UAAUCGGUCCUUUUCAGGACCACAAA 812 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #1065,sp|AB019404.1|AB019404 Drosophila teissieri gene for histone H3, complete cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACAAA hit 10 : 806 831 (fwd) 29.39 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCAC AA 806 CAAUCGGUCCUUUUCAGGACCACAAA 831 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #1067,sp|AB019406.1|AB019406 Drosophila erecta gene for histone H3, complete cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACAAA hit 11 : 811 836 (fwd) 29.39 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCAC AA 811 CAAUCGGUCCUUUUCAGGACCACAAA 836 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #1068,sp|AB019407.1|AB019407 Drosophila orena gene for histone H3, complete cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACAAA hit 12 : 798 823 (fwd) 29.39 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCAC AA 798 CAAUCGGUCCUUUUCAGGACCACAAA 823 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #2989,sp|AB055959.1|AB055959 Drosophila simulans H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds. ----isReversed: 0 ----hitSequence: CCAUCGGUCCUUUUCAGGACCACUAU hit 13 : 637 662 (fwd) 26.62 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CA +GG::CUUUUCAG::CCAC A 637 CCAUCGGUCCUUUUCAGGACCACUAU 662 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #2989,sp|AB055959.1|AB055959 Drosophila simulans H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds. ----isReversed: 0 ----hitSequence: AAAACGGCCCUUUUCAGGGCCACAAU hit 14 : 2078 2103 (fwd) 35.94 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGC:CUUUUCAG:GCCAC A 2078 AAAACGGCCCUUUUCAGGGCCACAAU 2103 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #2989,sp|AB055959.1|AB055959 Drosophila simulans H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds. ----isReversed: 1 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 15 : 4585 4560 (rev) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 51 UAAUCGGUCCUUUUCAGGACCACAAA 76 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #2989,sp|AB055959.1|AB055959 Drosophila simulans H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds. ----isReversed: 1 ----hitSequence: CAAACCGUCCUUUUCAGGACGACCAA hit 16 : 1030 1005 (rev) 30.59 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+ G::CUUUUCAG::C ACCAA 3606 CAAACCGUCCUUUUCAGGACGACCAA 3631 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3676,sp|AB073634.1|AB073634 Drosophila erecta H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAU hit 17 : 652 677 (fwd) 28.34 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCA 652 CAAUCGGUCCUUUUCAGGACCACCAU 677 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3676,sp|AB073634.1|AB073634 Drosophila erecta H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds. ----isReversed: 0 ----hitSequence: AAAACGGCCCUUUUCAGGGCCACAAU hit 18 : 2133 2158 (fwd) 35.94 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGC:CUUUUCAG:GCCAC A 2133 AAAACGGCCCUUUUCAGGGCCACAAU 2158 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3676,sp|AB073634.1|AB073634 Drosophila erecta H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds. ----isReversed: 1 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACAAA hit 19 : 4669 4644 (rev) 29.39 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCAC AA 62 CAAUCGGUCCUUUUCAGGACCACAAA 87 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3676,sp|AB073634.1|AB073634 Drosophila erecta H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds. ----isReversed: 1 ----hitSequence: AAACAAGCCCUUUUCAGGGCUACAAC hit 20 : 2450 2425 (rev) 27.64 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A A:GC:CUUUUCAG:GC:AC A 2281 AAACAAGCCCUUUUCAGGGCUACAAC 2306 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3676,sp|AB073634.1|AB073634 Drosophila erecta H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds. ----isReversed: 1 ----hitSequence: CAAACCGUCCUUUUCAGGACGACCAA hit 21 : 1085 1060 (rev) 30.59 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+ G::CUUUUCAG::C ACCAA 3646 CAAACCGUCCUUUUCAGGACGACCAA 3671 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3677,sp|AB073635.1|AB073635 Drosophila yakuba H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds, clone:Yak6. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAC hit 22 : 642 667 (fwd) 29.25 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCA 642 CAAUCGGUCCUUUUCAGGACCACCAC 667 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3677,sp|AB073635.1|AB073635 Drosophila yakuba H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds, clone:Yak6. ----isReversed: 0 ----hitSequence: AAAACGGCCCUUUUCAGGGCCACAAU hit 23 : 2145 2170 (fwd) 35.94 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGC:CUUUUCAG:GCCAC A 2145 AAAACGGCCCUUUUCAGGGCCACAAU 2170 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3677,sp|AB073635.1|AB073635 Drosophila yakuba H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds, clone:Yak6. ----isReversed: 1 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACAAA hit 24 : 4724 4699 (rev) 29.39 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCAC AA 60 CAAUCGGUCCUUUUCAGGACCACAAA 85 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3677,sp|AB073635.1|AB073635 Drosophila yakuba H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds, clone:Yak6. ----isReversed: 1 ----hitSequence: AAACAAGCCCUUUUCAGGGCUACAAC hit 25 : 2443 2418 (rev) 27.64 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A A:GC:CUUUUCAG:GC:AC A 2341 AAACAAGCCCUUUUCAGGGCUACAAC 2366 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3677,sp|AB073635.1|AB073635 Drosophila yakuba H4, H2A, H2B, H1 genes for histone 4, histone 2A, histone 2B, histone 1, complete cds, clone:Yak6. ----isReversed: 1 ----hitSequence: CAAACCGUCCUUUUCAGGACGACCAA hit 26 : 1090 1065 (rev) 30.59 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+ G::CUUUUCAG::C ACCAA 3694 CAAACCGUCCUUUUCAGGACGACCAA 3719 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #3773,sp|AB076033.1|AB076033 Lymantria dispar DNA, microsatellite, locus GM741. ----isReversed: 0 ----hitSequence: GAAAAGGCCCUUUUCAGGGCCACAAA hit 27 : 292 317 (fwd) 34.91 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +AAAGGC:CUUUUCAG:GCCAC AA 292 GAAAAGGCCCUUUUCAGGGCCACAAA 317 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5848,sp|AC010057.7|AC010057 Drosophila melanogaster 3L BAC RP98-26C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AACACGGCCUUUUACACGGCCACCAA hit 28 : 36119 36094 (rev) 24.77 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+ A+GGC::UUU CA::GCCACCAA 156470 AACACGGCCUUUUACACGGCCACCAA 156495 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6008,sp|AC016132.4|AC016132 Drosophila melanogaster, chromosome 3R, region 93D-93D, BAC clone BACR34E13, complete sequence. ----isReversed: 1 ----hitSequence: UAAUCGGCUCUUUUAAGAGCCACCAA hit 29 : 92623 92598 (rev) 31.13 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GGCUCUUUU AGAGCCACCAA 74853 UAAUCGGCUCUUUUAAGAGCCACCAA 74878 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6124,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUA hit 30 : 13704 13729 (fwd) 28.62 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 13704 CCAACGGCCCUCUUUAGGGCCACAUA 13729 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6124,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUAAGGGCCACAAA hit 31 : 16166 16191 (fwd) 32.11 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 16166 CCAACGGCCCUCUUAAGGGCCACAAA 16191 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6124,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGAGCCACAAA hit 32 : 19380 19405 (fwd) 26.63 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC CU UU AG GCCAC AA 19380 CCAACGGCCCUCUUUAGAGCCACAAA 19405 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6124,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUAAGGGCCACAAA hit 33 : 18273 18248 (rev) 32.11 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 21974 CCAACGGCCCUCUUAAGGGCCACAAA 21999 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6124,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 34 : 15059 15034 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 25188 CCAACGGCCCUCUUUAGGGCCACAAA 25213 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6124,sp|AC024696.1|AC024696 Caenorhabditis elegans cosmid F07B7, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAU hit 35 : 12654 12629 (rev) 29.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 27593 CCAACGGCCCUCUUUAGGGCCACAAU 27618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6387,sp|AC084502.1|AC084502 Caenorhabditis briggsae cosmid G14F21, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 36 : 4081 4106 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 4081 CCAACGGCCCUCUUUAGGGCCACAAA 4106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6387,sp|AC084502.1|AC084502 Caenorhabditis briggsae cosmid G14F21, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 37 : 7086 7111 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 7086 CCAACGGCCCUCUUUAGGGCCACAAA 7111 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6387,sp|AC084502.1|AC084502 Caenorhabditis briggsae cosmid G14F21, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAU hit 38 : 6022 5997 (rev) 29.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 33418 CCAACGGCCCUCUUUAGGGCCACAAU 33443 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6387,sp|AC084502.1|AC084502 Caenorhabditis briggsae cosmid G14F21, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 39 : 3035 3010 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 36405 CCAACGGCCCUCUUUAGGGCCACAAA 36430 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6474,sp|AC084589.1|AC084589 Caenorhabditis briggsae cosmid G41K24, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 40 : 6075 6100 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 6075 CCAACGGCCCUCUUUAGGGCCACAAA 6100 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6474,sp|AC084589.1|AC084589 Caenorhabditis briggsae cosmid G41K24, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 41 : 9378 9403 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 9378 CCAACGGCCCUCUUUAGGGCCACAAA 9403 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6474,sp|AC084589.1|AC084589 Caenorhabditis briggsae cosmid G41K24, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAG hit 42 : 8311 8286 (rev) 25.90 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 30375 CCAACGGCCCUCUUUAGGGCCACAAG 30400 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6474,sp|AC084589.1|AC084589 Caenorhabditis briggsae cosmid G41K24, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACGAA hit 43 : 5032 5007 (rev) 27.33 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 33654 CCAACGGCCCUCUUUAGGGCCACGAA 33679 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6538,sp|AC084653.1|AC084653 Caenorhabditis briggsae cosmid G45O14, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAC hit 44 : 38344 38369 (fwd) 29.91 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 38344 CCAACGGCCCUCUUUAGGGCCACAAC 38369 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6538,sp|AC084653.1|AC084653 Caenorhabditis briggsae cosmid G45O14, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 45 : 40174 40199 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 40174 CCAACGGCCCUCUUUAGGGCCACAAA 40199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6538,sp|AC084653.1|AC084653 Caenorhabditis briggsae cosmid G45O14, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 46 : 39102 39077 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 4882 CCAACGGCCCUCUUUAGGGCCACAAA 4907 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6538,sp|AC084653.1|AC084653 Caenorhabditis briggsae cosmid G45O14, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUAAGGGCCACAAA hit 47 : 37280 37255 (rev) 32.11 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 6704 CCAACGGCCCUCUUAAGGGCCACAAA 6729 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6624,sp|AC091219.2|AC091219 Drosophila melanogaster 3L BAC RP98-4C3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AACACGGCCUUUUACACGGCCACCAA hit 48 : 75469 75444 (rev) 24.77 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+ A+GGC::UUU CA::GCCACCAA 92579 AACACGGCCUUUUACACGGCCACCAA 92604 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7485,sp|AE003469.3|AE003469 Drosophila melanogaster chromosome 3L, section 3 of 83 of the complete sequence. ----isReversed: 1 ----hitSequence: AACACGGCCUUUUACACGGCCACCAA hit 49 : 62148 62123 (rev) 24.77 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+ A+GGC::UUU CA::GCCACCAA 224368 AACACGGCCUUUUACACGGCCACCAA 224393 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7686,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: CAAACCGUCCUUUUCAGGACGACCAA hit 50 : 120230 120255 (fwd) 30.59 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+ G::CUUUUCAG::C ACCAA 120230 CAAACCGUCCUUUUCAGGACGACCAA 120255 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7686,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: CAAACCGUCCUUUUCAGGACGACCAA hit 51 : 121012 121037 (fwd) 30.59 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+ G::CUUUUCAG::C ACCAA 121012 CAAACCGUCCUUUUCAGGACGACCAA 121037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7686,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: CAAACCGUCCUUUUCAGGACGACCAA hit 52 : 136038 136063 (fwd) 30.59 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+ G::CUUUUCAG::C ACCAA 136038 CAAACCGUCCUUUUCAGGACGACCAA 136063 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7686,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 53 : 137528 137553 (fwd) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 137528 UAAUCGGUCCUUUUCAGGACCACAAA 137553 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7686,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence. ----isReversed: 1 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAU hit 54 : 136432 136407 (rev) 28.34 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCA 3669 CAAUCGGUCCUUUUCAGGACCACCAU 3694 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7686,sp|AE003670.4|AE003670 Drosophila melanogaster chromosome 2L section 79 of 83 of the complete sequence. ----isReversed: 1 ----hitSequence: AAAACGGCCCUUUUCAGGGCCACAAU hit 55 : 134986 134961 (rev) 35.94 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGC:CUUUUCAG:GCCAC A 5115 AAAACGGCCCUUUUCAGGGCCACAAU 5140 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7750,sp|AE003734.2|AE003734 Drosophila melanogaster chromosome 3R, section 72 of 118 of the complete sequence. ----isReversed: 1 ----hitSequence: UAAUCGGCUCUUUUAAGAGCCACCAA hit 56 : 218715 218690 (rev) 31.13 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GGCUCUUUU AGAGCCACCAA 22766 UAAUCGGCUCUUUUAAGAGCCACCAA 22791 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #8540,sp|AF007904.1|AF007904 Chaetopterus variopedatus histone H4 and histone H2A genes, complete cds. ----isReversed: 0 ----hitSequence: AAAACGGUCCUUAUCAGGACCAAACA hit 57 : 709 734 (fwd) 28.95 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GG::CUU UCAG::CCA +A 709 AAAACGGUCCUUAUCAGGACCAAACA 734 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #8540,sp|AF007904.1|AF007904 Chaetopterus variopedatus histone H4 and histone H2A genes, complete cds. ----isReversed: 1 ----hitSequence: CCAACGGUCCUUCUCAGGACCACUAU hit 58 : 1311 1286 (rev) 29.08 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GG::CUU UCAG::CCAC A 539 CCAACGGUCCUUCUCAGGACCACUAU 564 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11917,sp|AF047656.1|AF047656 Caenorhabditis elegans cosmid F17E9, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAC hit 59 : 2352 2377 (fwd) 29.91 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 2352 CCAACGGCCCUCUUUAGGGCCACAAC 2377 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11917,sp|AF047656.1|AF047656 Caenorhabditis elegans cosmid F17E9, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAU hit 60 : 3963 3988 (fwd) 29.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 3963 CCAACGGCCCUCUUUAGGGCCACAAU 3988 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11917,sp|AF047656.1|AF047656 Caenorhabditis elegans cosmid F17E9, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUU hit 61 : 2893 2868 (rev) 26.25 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC 22651 CCAACGGCCCUCUUUAGGGCCACAUU 22676 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11917,sp|AF047656.1|AF047656 Caenorhabditis elegans cosmid F17E9, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 62 : 1223 1198 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 24321 CCAACGGCCCUCUUUAGGGCCACAAA 24346 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16166,sp|AF107695.1|AF107695 Aedes aegypti clone 440 Feilai family of SINES. ----isReversed: 0 ----hitSequence: AAAAGGGCCCUCUUCAGGGCCACAAC hit 63 : 103 128 (fwd) 27.05 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA GGC:CU UUCAG:GCCAC A 103 AAAAGGGCCCUCUUCAGGGCCACAAC 128 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26456,sp|AF216837.1|AF216837 Drosophila virilis clone p3.6-33 histone H4 and histone H2A genes, partial cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAA hit 64 : 90 115 (fwd) 30.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCAA 90 CAAUCGGUCCUUUUCAGGACCACCAA 115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26456,sp|AF216837.1|AF216837 Drosophila virilis clone p3.6-33 histone H4 and histone H2A genes, partial cds. ----isReversed: 1 ----hitSequence: CCAACCGUCCUUUUCAGGACGACCAA hit 65 : 815 790 (rev) 30.68 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+ G::CUUUUCAG::C ACCAA 180 CCAACCGUCCUUUUCAGGACGACCAA 205 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26456,sp|AF216837.1|AF216837 Drosophila virilis clone p3.6-33 histone H4 and histone H2A genes, partial cds. ----isReversed: 1 ----hitSequence: CCAAGCGUCCUUUUCAGGACAACCCA hit 66 : 384 359 (rev) 24.87 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA G::CUUUUCAG::C ACC+A 611 CCAAGCGUCCUUUUCAGGACAACCCA 636 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26457,sp|AF216838.1|AF216838 Drosophila virilis clone p5.2-33 histone H4 gene, partial cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAA hit 67 : 90 115 (fwd) 30.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCAA 90 CAAUCGGUCCUUUUCAGGACCACCAA 115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26458,sp|AF216839.1|AF216839 Drosophila virilis clone p5.2-33 histone H2A gene, partial cds. ----isReversed: 1 ----hitSequence: CCAACCGUCCUUUUCAGGACGACCAA hit 68 : 953 928 (rev) 30.68 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+ G::CUUUUCAG::C ACCAA 180 CCAACCGUCCUUUUCAGGACGACCAA 205 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26459,sp|AF216840.1|AF216840 Drosophila virilis clone p5.3-33 histone H4 and histone H2A genes, partial cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAA hit 69 : 91 116 (fwd) 30.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCAA 91 CAAUCGGUCCUUUUCAGGACCACCAA 116 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26459,sp|AF216840.1|AF216840 Drosophila virilis clone p5.3-33 histone H4 and histone H2A genes, partial cds. ----isReversed: 1 ----hitSequence: CCAACCGUCCUUUUCAGGACGACCAA hit 70 : 816 791 (rev) 30.68 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+ G::CUUUUCAG::C ACCAA 180 CCAACCGUCCUUUUCAGGACGACCAA 205 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26459,sp|AF216840.1|AF216840 Drosophila virilis clone p5.3-33 histone H4 and histone H2A genes, partial cds. ----isReversed: 1 ----hitSequence: CCAAGCGUCCUUUUCAGGACAACCCA hit 71 : 385 360 (rev) 24.87 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA G::CUUUUCAG::C ACC+A 611 CCAAGCGUCCUUUUCAGGACAACCCA 636 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26460,sp|AF216841.1|AF216841 Drosophila virilis clone p5.9-12 histone H4 and histone H2A genes, partial cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAA hit 72 : 90 115 (fwd) 30.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCAA 90 CAAUCGGUCCUUUUCAGGACCACCAA 115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26460,sp|AF216841.1|AF216841 Drosophila virilis clone p5.9-12 histone H4 and histone H2A genes, partial cds. ----isReversed: 1 ----hitSequence: CCAAACGUCCUUUUCAGGACGACCAA hit 73 : 1407 1382 (rev) 30.83 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA G::CUUUUCAG::C ACCAA 180 CCAAACGUCCUUUUCAGGACGACCAA 205 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26461,sp|AF216842.1|AF216842 Drosophila virilis clone p7.0-33 histone H4 gene, partial cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAA hit 74 : 90 115 (fwd) 30.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCAA 90 CAAUCGGUCCUUUUCAGGACCACCAA 115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26462,sp|AF216843.1|AF216843 Drosophila virilis clone p7.0-33 histone H2A gene, partial cds. ----isReversed: 1 ----hitSequence: CCAAACGUCCUUUUCAGGACGACCAA hit 75 : 1447 1422 (rev) 30.83 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA G::CUUUUCAG::C ACCAA 179 CCAAACGUCCUUUUCAGGACGACCAA 204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26462,sp|AF216843.1|AF216843 Drosophila virilis clone p7.0-33 histone H2A gene, partial cds. ----isReversed: 1 ----hitSequence: CCAAACGUCCUUAUCAGGACGACCAA hit 76 : 1016 991 (rev) 28.12 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA G::CUU UCAG::C ACCAA 610 CCAAACGUCCUUAUCAGGACGACCAA 635 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26463,sp|AF216844.1|AF216844 Drosophila virilis clone p7.5-4 histone H4 gene, partial cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAA hit 77 : 90 115 (fwd) 30.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCAA 90 CAAUCGGUCCUUUUCAGGACCACCAA 115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26464,sp|AF216845.1|AF216845 Drosophila virilis clone p7.5-4 histone H2A gene, partial cds. ----isReversed: 1 ----hitSequence: CCAAACGUCCUUUUCAGGACGACCAA hit 78 : 1265 1240 (rev) 30.83 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA G::CUUUUCAG::C ACCAA 179 CCAAACGUCCUUUUCAGGACGACCAA 204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26465,sp|AF216846.1|AF216846 Drosophila virilis clone p8.0-4 histone H4 gene, partial cds. ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAA hit 79 : 90 115 (fwd) 30.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCAA 90 CAAUCGGUCCUUUUCAGGACCACCAA 115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26466,sp|AF216847.1|AF216847 Drosophila virilis clone p8.0-4 histone H2A gene, partial cds. ----isReversed: 1 ----hitSequence: CCAAACGUCCUUUUCAGGACGACCAA hit 80 : 1168 1143 (rev) 30.83 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA G::CUUUUCAG::C ACCAA 179 CCAAACGUCCUUUUCAGGACGACCAA 204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #26466,sp|AF216847.1|AF216847 Drosophila virilis clone p8.0-4 histone H2A gene, partial cds. ----isReversed: 1 ----hitSequence: CCAAACGUCCUUUUCAGGACGACCAA hit 81 : 737 712 (rev) 30.83 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA G::CUUUUCAG::C ACCAA 610 CCAAACGUCCUUUUCAGGACGACCAA 635 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #35000,sp|AF304122.1|AF304122 Caenorhabditis elegans histone H3 (2O113) mRNA, complete cds. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 82 : 482 507 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 482 CCAACGGCCCUCUUUAGGGCCACAAA 507 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #39802,sp|AF356516.1|AF356516 Tetrapygus niger early histone H2B and early histone H3 genes, partial cds. ----isReversed: 0 ----hitSequence: CAAACGGCCCUUUUCAGGGCCACAAA hit 83 : 55 80 (fwd) 38.18 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGC:CUUUUCAG:GCCAC AA 55 CAAACGGCCCUUUUCAGGGCCACAAA 80 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #41779,sp|AF378198.1|AF378198 Rhynchosciara americana histone H1 (rah1), histone H3 (rah3), histone H4 (rah4), histone H2A (rah2a), and histone H2B (rah2b) g ----isReversed: 0 ----hitSequence: CAAAAGGCUCUUUUCAGAGCCACCAU hit 84 : 4387 4412 (fwd) 37.88 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AAAGGCUCUUUUCAGAGCCACCA 4387 CAAAAGGCUCUUUUCAGAGCCACCAU 4412 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #41779,sp|AF378198.1|AF378198 Rhynchosciara americana histone H1 (rah1), histone H3 (rah3), histone H4 (rah4), histone H2A (rah2a), and histone H2B (rah2b) g ----isReversed: 1 ----hitSequence: GAAAACGCCCUUUUAAGGGCGACCAA hit 85 : 3375 3350 (rev) 28.79 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +AAA GC:CUUUU AG:GC ACCAA 1757 GAAAACGCCCUUUUAAGGGCGACCAA 1782 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #41779,sp|AF378198.1|AF378198 Rhynchosciara americana histone H1 (rah1), histone H3 (rah3), histone H4 (rah4), histone H2A (rah2a), and histone H2B (rah2b) g ----isReversed: 1 ----hitSequence: UAACCGGUCCUUUUCAGGACCAACAA hit 86 : 1874 1849 (rev) 28.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCA CAA 3258 UAACCGGUCCUUUUCAGGACCAACAA 3283 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #4139,sp|AF496623.1|AF496623 Crassostrea gigas clone a068 microsatellite sequence. ----isReversed: 1 ----hitSequence: AAAAAAGCCCUUUUCAGGGCUACCCA hit 87 : 449 424 (rev) 32.91 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AAA:GC:CUUUUCAG:GC:ACC+A 93 AAAAAAGCCCUUUUCAGGGCUACCCA 118 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #4140,sp|AF496624.1|AF496624 Crassostrea gigas clone OysterA#23 microsatellite sequence. ----isReversed: 1 ----hitSequence: AAAAAAGCCCUUUUCAGGGCUACCCA hit 88 : 451 426 (rev) 32.91 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AAA:GC:CUUUUCAG:GC:ACC+A 95 AAAAAAGCCCUUUUCAGGGCUACCCA 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #4141,sp|AF496625.1|AF496625 Crassostrea gigas clone OysterA#29 microsatellite sequence. ----isReversed: 1 ----hitSequence: AAAAAAGCCCUUUUCAGGGCUACCCA hit 89 : 455 430 (rev) 32.91 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AAA:GC:CUUUUCAG:GC:ACC+A 95 AAAAAAGCCCUUUUCAGGGCUACCCA 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #4142,sp|AF496626.1|AF496626 Crassostrea gigas clone a076 microsatellite sequence. ----isReversed: 1 ----hitSequence: AAAAAAGCCCUUUUCAGGGCUACCCA hit 90 : 460 435 (rev) 32.91 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AAA:GC:CUUUUCAG:GC:ACC+A 92 AAAAAAGCCCUUUUCAGGGCUACCCA 117 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #7834,sp|L11067.1|AFH342BA Acropora formosa histone H3 (H3), histone H2B (H2B), histone H2A (H2A), and histone H4 (H4) genes, complete cds. ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUAAGAGCACCAAU hit 91 : 431 456 (fwd) 26.70 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+ GCUCUUUU AGAGC C A 431 AAAACGGCUCUUUUAAGAGCACCAAU 456 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #7834,sp|L11067.1|AFH342BA Acropora formosa histone H3 (H3), histone H2B (H2B), histone H2A (H2A), and histone H4 (H4) genes, complete cds. ----isReversed: 0 ----hitSequence: AAAACGGCUCUUGUAGGAGCCACCAC hit 92 : 2585 2610 (fwd) 25.53 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUC U U GAGCCACCA 2585 AAAACGGCUCUUGUAGGAGCCACCAC 2610 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #7834,sp|L11067.1|AFH342BA Acropora formosa histone H3 (H3), histone H2B (H2B), histone H2A (H2A), and histone H4 (H4) genes, complete cds. ----isReversed: 1 ----hitSequence: AAAACGGCUCUUAUAGGAGCCAACAA hit 93 : 3159 3134 (rev) 27.07 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUC U U GAGCCA CAA 606 AAAACGGCUCUUAUAGGAGCCAACAA 631 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #7834,sp|L11067.1|AFH342BA Acropora formosa histone H3 (H3), histone H2B (H2B), histone H2A (H2A), and histone H4 (H4) genes, complete cds. ----isReversed: 1 ----hitSequence: ACAACGGCUCUUUUAGGAGCCAACAC hit 94 : 1432 1407 (rev) 28.40 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUC UUU GAGCCA CA 2333 ACAACGGCUCUUUUAGGAGCCAACAC 2358 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #7835,sp|M60509.1|AFH3AA Acropora formosa histone H3 protein (H3) gene, complete cds. ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUAAGAGCACCAAU hit 95 : 431 456 (fwd) 26.70 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+ GCUCUUUU AGAGC C A 431 AAAACGGCUCUUUUAAGAGCACCAAU 456 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #9414,sp|AK113063.1|AK113063 Ciona intestinalis cDNA, clone:ciad003h11, full insert sequence. ----isReversed: 0 ----hitSequence: AAAUCGGCCCUUUUCAGGGCCAACCU hit 96 : 964 989 (fwd) 27.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUUCAG:GCCA C+ 964 AAAUCGGCCCUUUUCAGGGCCAACCU 989 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #11693,sp|AK115342.1|AK115342 Ciona intestinalis cDNA, clone:cieg046b21, full insert sequence. ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUCAGAGCCACCCC hit 97 : 725 750 (fwd) 37.97 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUCUUUUCAGAGCCACC+ 725 AAAACGGCUCUUUUCAGAGCCACCCC 750 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #15072,sp|X14816.1|ASRN5SB Artemia gene for 5S rRNA (pArt5H-b), I ----isReversed: 0 ----hitSequence: CCAACAGCCCUUUUAAGGGCUACAAA hit 98 : 125 150 (fwd) 30.83 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+:GC:CUUUU AG:GC:AC AA 125 CCAACAGCCCUUUUAAGGGCUACAAA 150 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #15073,sp|X14815.1|ASRN5SC Artemia gene for 5S rRNA (pArt5H-a) ----isReversed: 0 ----hitSequence: CCAACAGCCCUUUUAAGGGCUACAAA hit 99 : 141 166 (fwd) 30.83 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+:GC:CUUUU AG:GC:AC AA 141 CCAACAGCCCUUUUAAGGGCUACAAA 166 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #16171,sp|AY013575.1|AY013575 Haliotis kamtschatkana clone Hka37 microsatellite sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUUUUCAGGGCCACCCA hit 100 : 129 154 (fwd) 38.80 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CUUUUCAG:GCCACC+A 129 CCAACGGCCCUUUUCAGGGCCACCCA 154 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #16176,sp|AY013580.1|AY013580 Haliotis kamtschatkana clone Hka6 microsatellite sequence. ----isReversed: 0 ----hitSequence: CAAACGGCCCUUUUCAGGGCCACCAA hit 101 : 296 321 (fwd) 39.50 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGC:CUUUUCAG:GCCACCAA 296 CAAACGGCCCUUUUCAGGGCCACCAA 321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #16795,sp|AY028698.1|AY028698 Trichinella spiralis histone H3 mRNA, complete cds. ----isReversed: 0 ----hitSequence: CCAACGGUCCUUAUCAGGACCACUAU hit 102 : 489 514 (fwd) 29.86 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GG::CUU UCAG::CCAC A 489 CCAACGGUCCUUAUCAGGACCACUAU 514 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #21762,sp|AY064471.1|AY064471 Aplysia californica histone H4 (His.H4) gene, complete cds. ----isReversed: 0 ----hitSequence: AAACCGGCCCUUUUAAGGGCCACAAC hit 103 : 461 486 (fwd) 32.19 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUU AG:GCCAC A 461 AAACCGGCCCUUUUAAGGGCCACAAC 486 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #21763,sp|AY064472.1|AY064472 Aplysia californica histone H3 (His.H3) gene, complete cds. ----isReversed: 0 ----hitSequence: CGAACGGUCCUUUUCAGGACCAAACC hit 104 : 581 606 (fwd) 25.04 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 + AA+GG::CUUUUCAG::CCA + 581 CGAACGGUCCUUUUCAGGACCAAACC 606 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #42709,sp|U21211.1|CD21211 Chironomus dorsalis histone H1-I gene, complete cds. ----isReversed: 0 ----hitSequence: AAAUCAGUCCUUUUCAGGACUACCAA hit 105 : 897 922 (fwd) 24.76 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +:G::CUUUUCAG::C:ACCAA 897 AAAUCAGUCCUUUUCAGGACUACCAA 922 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43096,sp|Z73102.1|CEB0035 Caenorhabditis elegans cosmid B0035 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 106 : 30858 30883 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 30858 CCAACGGCCCUCUUUAGGGCCACAAA 30883 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43096,sp|Z73102.1|CEB0035 Caenorhabditis elegans cosmid B0035 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 107 : 32759 32784 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 32759 CCAACGGCCCUCUUUAGGGCCACAAA 32784 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43096,sp|Z73102.1|CEB0035 Caenorhabditis elegans cosmid B0035 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 108 : 31688 31663 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 7796 CCAACGGCCCUCUUUAGGGCCACAAA 7821 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43336,sp|U41556.2|CEC25B8 Caenorhabditis elegans cosmid C25B8, complete sequence. ----isReversed: 0 ----hitSequence: CAAACAGCACUUUUCAGGGCAAACAA hit 109 : 2872 2897 (fwd) 25.69 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+:GC CUUUUCAG GC:A CAA 2872 CAAACAGCACUUUUCAGGGCAAACAA 2897 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43616,sp|L39939.1|CECPR6G Caenorhabditis elegans cathepsin B-like cysteine proteinase (cpr-6) gene, complete cds. ----isReversed: 0 ----hitSequence: CAAACAGCACUUUUCAGGGCAAACAA hit 110 : 906 931 (fwd) 25.69 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+:GC CUUUUCAG GC:A CAA 906 CAAACAGCACUUUUCAGGGCAAACAA 931 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43756,sp|Z81495.1|CEF08G2 Caenorhabditis elegans cosmid F08G2 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 111 : 1558 1583 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 1558 CCAACGGCCCUCUUUAGGGCCACAAA 1583 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43756,sp|Z81495.1|CEF08G2 Caenorhabditis elegans cosmid F08G2 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 112 : 2059 2034 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 28788 CCAACGGCCCUCUUUAGGGCCACAAA 28813 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43756,sp|Z81495.1|CEF08G2 Caenorhabditis elegans cosmid F08G2 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACACA hit 113 : 516 491 (rev) 30.57 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC +A 30331 CCAACGGCCCUCUUUAGGGCCACACA 30356 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43895,sp|Z68336.1|CEF22B3 Caenorhabditis elegans cosmid F22B3 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 114 : 2086 2111 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 2086 CCAACGGCCCUCUUUAGGGCCACAAA 2111 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43895,sp|Z68336.1|CEF22B3 Caenorhabditis elegans cosmid F22B3 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 115 : 1017 992 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 29464 CCAACGGCCCUCUUUAGGGCCACAAA 29489 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44015,sp|U40934.1|CEF35H10 Caenorhabditis elegans cosmid F35H10, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUU hit 116 : 36284 36309 (fwd) 26.25 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC 36284 CCAACGGCCCUCUUUAGGGCCACAUU 36309 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44015,sp|U40934.1|CEF35H10 Caenorhabditis elegans cosmid F35H10, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAU hit 117 : 35214 35189 (rev) 29.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 1602 CCAACGGCCCUCUUUAGGGCCACAAU 1627 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44198,sp|Z82271.1|CEF54E12 Caenorhabditis elegans cosmid F54E12 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 118 : 5216 5241 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 5216 CCAACGGCCCUCUUUAGGGCCACAAA 5241 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44198,sp|Z82271.1|CEF54E12 Caenorhabditis elegans cosmid F54E12 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 119 : 7169 7194 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 7169 CCAACGGCCCUCUUUAGGGCCACAAA 7194 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44198,sp|Z82271.1|CEF54E12 Caenorhabditis elegans cosmid F54E12 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 120 : 6046 6021 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 7832 CCAACGGCCCUCUUUAGGGCCACAAA 7857 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44198,sp|Z82271.1|CEF54E12 Caenorhabditis elegans cosmid F54E12 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 121 : 4145 4120 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 9733 CCAACGGCCCUCUUUAGGGCCACAAA 9758 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44221,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 122 : 22772 22797 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 22772 CCAACGGCCCUCUUUAGGGCCACAAA 22797 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44221,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAU hit 123 : 24532 24557 (fwd) 29.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 24532 CCAACGGCCCUCUUUAGGGCCACAAU 24557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44221,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 124 : 23463 23438 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 13892 CCAACGGCCCUCUUUAGGGCCACAAA 13917 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44221,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAU hit 125 : 21630 21605 (rev) 29.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 15725 CCAACGGCCCUCUUUAGGGCCACAAU 15750 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44315,sp|Z92789.1|CEH02I12 Caenorhabditis elegans fosmid H02I12 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 126 : 30206 30231 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 30206 CCAACGGCCCUCUUUAGGGCCACAAA 30231 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44315,sp|Z92789.1|CEH02I12 Caenorhabditis elegans fosmid H02I12 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 127 : 29083 29058 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 5005 CCAACGGCCCUCUUUAGGGCCACAAA 5030 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44364,sp|X15634.1|CEHIS10 C. elegans core histone genes H4(his-10) and H3(his-9) ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 128 : 1233 1258 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 1233 CCAACGGCCCUCUUUAGGGCCACAAA 1258 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44364,sp|X15634.1|CEHIS10 C. elegans core histone genes H4(his-10) and H3(his-9) ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 129 : 151 126 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 1150 CCAACGGCCCUCUUUAGGGCCACAAA 1175 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44365,sp|X15633.1|CEHIS12 C. elegans core histone genes H2A(his12) and H2B(his11) ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 130 : 174 149 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 1066 CCAACGGCCCUCUUUAGGGCCACAAA 1091 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44425,sp|U41625.1|CEK03A1 Caenorhabditis elegans cosmid K03A1, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUA hit 131 : 33871 33896 (fwd) 28.62 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 33871 CCAACGGCCCUCUUUAGGGCCACAUA 33896 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44425,sp|U41625.1|CEK03A1 Caenorhabditis elegans cosmid K03A1, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUA hit 132 : 32829 32804 (rev) 28.62 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 2399 CCAACGGCCCUCUUUAGGGCCACAUA 2424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45149,sp|Z93388.1|CET10C6 Caenorhabditis elegans cosmid T10C6 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 133 : 29299 29324 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 29299 CCAACGGCCCUCUUUAGGGCCACAAA 29324 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45149,sp|Z93388.1|CET10C6 Caenorhabditis elegans cosmid T10C6 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 134 : 30949 30974 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 30949 CCAACGGCCCUCUUUAGGGCCACAAA 30974 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45149,sp|Z93388.1|CET10C6 Caenorhabditis elegans cosmid T10C6 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUA hit 135 : 29900 29875 (rev) 28.62 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 3552 CCAACGGCCCUCUUUAGGGCCACAUA 3577 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45149,sp|Z93388.1|CET10C6 Caenorhabditis elegans cosmid T10C6 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUU hit 136 : 28191 28166 (rev) 26.25 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC 5261 CCAACGGCCCUCUUUAGGGCCACAUU 5286 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45244,sp|Z81128.2|CET23D8 Caenorhabditis elegans cosmid T23D8 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 137 : 25556 25531 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 9021 CCAACGGCCCUCUUUAGGGCCACAAA 9046 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45583,sp|U64845.1|CEUF45F2 Caenorhabditis elegans cosmid F45F2, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 138 : 24542 24567 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 24542 CCAACGGCCCUCUUUAGGGCCACAAA 24567 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45583,sp|U64845.1|CEUF45F2 Caenorhabditis elegans cosmid F45F2, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGAGCCACAAA hit 139 : 25727 25752 (fwd) 26.63 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC CU UU AG GCCAC AA 25727 CCAACGGCCCUCUUUAGAGCCACAAA 25752 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45583,sp|U64845.1|CEUF45F2 Caenorhabditis elegans cosmid F45F2, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUA hit 140 : 23494 23469 (rev) 28.62 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 6059 CCAACGGCCCUCUUUAGGGCCACAUA 6084 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45583,sp|U64845.1|CEUF45F2 Caenorhabditis elegans cosmid F45F2, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUU hit 141 : 21663 21638 (rev) 26.25 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC 7890 CCAACGGCCCUCUUUAGGGCCACAUU 7915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45609,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUA hit 142 : 11360 11385 (fwd) 28.62 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 11360 CCAACGGCCCUCUUUAGGGCCACAUA 11385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45609,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUAAGGGCCACAAA hit 143 : 13822 13847 (fwd) 32.11 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 13822 CCAACGGCCCUCUUAAGGGCCACAAA 13847 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45609,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGAGCCACAAA hit 144 : 17036 17061 (fwd) 26.63 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC CU UU AG GCCAC AA 17036 CCAACGGCCCUCUUUAGAGCCACAAA 17061 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45609,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4, complete sequence. ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAU hit 145 : 19437 19462 (fwd) 29.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 19437 CCAACGGCCCUCUUUAGGGCCACAAU 19462 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45609,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAUA hit 146 : 18390 18365 (rev) 28.62 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 24788 CCAACGGCCCUCUUUAGGGCCACAUA 24813 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45609,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUAAGGGCCACAAA hit 147 : 15929 15904 (rev) 32.11 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 27249 CCAACGGCCCUCUUAAGGGCCACAAA 27274 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45609,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 148 : 12715 12690 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 30463 CCAACGGCCCUCUUUAGGGCCACAAA 30488 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45609,sp|U64843.2|CEUK06C4 Caenorhabditis elegans cosmid K06C4, complete sequence. ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAU hit 149 : 10310 10285 (rev) 29.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC A 32868 CCAACGGCCCUCUUUAGGGCCACAAU 32893 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACACA hit 150 : 24921 24946 (fwd) 30.57 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC +A 24921 CCAACGGCCCUCUUUAGGGCCACACA 24946 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 151 : 26816 26841 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 26816 CCAACGGCCCUCUUUAGGGCCACAAA 26841 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACACA hit 152 : 28359 28384 (fwd) 30.57 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC +A 28359 CCAACGGCCCUCUUUAGGGCCACACA 28384 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 153 : 30254 30279 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 30254 CCAACGGCCCUCUUUAGGGCCACAAA 30279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 0 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 154 : 32028 32053 (fwd) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 32028 CCAACGGCCCUCUUUAGGGCCACAAA 32053 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 155 : 30945 30920 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 1480 CCAACGGCCCUCUUUAGGGCCACAAA 1505 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 156 : 29171 29146 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 3254 CCAACGGCCCUCUUUAGGGCCACAAA 3279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 157 : 27317 27292 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 5108 CCAACGGCCCUCUUUAGGGCCACAAA 5133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 158 : 25733 25708 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 6692 CCAACGGCCCUCUUUAGGGCCACAAA 6717 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46145,sp|Z83245.4|CEZK131 Caenorhabditis elegans cosmid ZK131 ----isReversed: 1 ----hitSequence: CCAACGGCCCUCUUUAGGGCCACAAA hit 159 : 23879 23854 (rev) 31.37 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC:CU UU AG:GCCAC AA 8546 CCAACGGCCCUCUUUAGGGCCACAAA 8571 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #47624,sp|L28726.1|CTHHI1A Chironomus thummi piger histone H1-III-1 gene, complete CDS. ----isReversed: 0 ----hitSequence: AAAAUAGUCCUUUUCAGGACUACCAA hit 160 : 1034 1059 (fwd) 25.70 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA :G::CUUUUCAG::C:ACCAA 1034 AAAAUAGUCCUUUUCAGGACUACCAA 1059 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #47635,sp|L29105.1|CTHIH1E Chironomus tentans (clone EStent1) histone H1e gene, complete cds. ----isReversed: 0 ----hitSequence: AAAUCAGUCCUUUUCAGGACUACCAA hit 161 : 1734 1759 (fwd) 24.76 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +:G::CUUUUCAG::C:ACCAA 1734 AAAUCAGUCCUUUUCAGGACUACCAA 1759 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #47636,sp|X72803.1|CTHIS C.thummi genes for histones H1, H2A, H3 and H4 ----isReversed: 0 ----hitSequence: UAAAAGGUCCUUUUCAGGACCACAAA hit 162 : 5789 5814 (fwd) 33.84 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +AAAGG::CUUUUCAG::CCAC AA 5789 UAAAAGGUCCUUUUCAGGACCACAAA 5814 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #47636,sp|X72803.1|CTHIS C.thummi genes for histones H1, H2A, H3 and H4 ----isReversed: 1 ----hitSequence: AAAAAGGUCUUUUUAAAGACCAACAA hit 163 : 4558 4533 (rev) 26.48 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AAAGG:::UUUU A:::CCA CAA 2139 AAAAAGGUCUUUUUAAAGACCAACAA 2164 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #47637,sp|X56335.1|CTHIST Chironomus thummi histone H1, H2A, H2B, H3, H4 genes with TFB1 insertion (foldback transposable element) ----isReversed: 1 ----hitSequence: UAAACCGUCCUUUUUAGGGCGACCAA hit 164 : 3095 3070 (rev) 25.50 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +AA+ G::CUUUU AG::C ACCAA 3177 UAAACCGUCCUUUUUAGGGCGACCAA 3202 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #47637,sp|X56335.1|CTHIST Chironomus thummi histone H1, H2A, H2B, H3, H4 genes with TFB1 insertion (foldback transposable element) ----isReversed: 1 ----hitSequence: AGAACGGUCUUUUUCAAGACCACCAA hit 165 : 1269 1244 (rev) 25.67 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A AA+GG:::UUUUCA:::CCACCAA 5003 AGAACGGUCUUUUUCAAGACCACCAA 5028 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #49325,sp|X52576.1|DHHIST D. HYDEI HISTONE GENES ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAA hit 166 : 3253 3278 (fwd) 30.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCAA 3253 CAAUCGGUCCUUUUCAGGACCACCAA 3278 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #49325,sp|X52576.1|DHHIST D. HYDEI HISTONE GENES ----isReversed: 0 ----hitSequence: CAAAAGGCCCUUAUCAGGGCCUCAAA hit 167 : 4864 4889 (fwd) 29.79 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AAAGGC:CUU UCAG:GCC C AA 4864 CAAAAGGCCCUUAUCAGGGCCUCAAA 4889 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #49325,sp|X52576.1|DHHIST D. HYDEI HISTONE GENES ----isReversed: 1 ----hitSequence: CCAAACGUCCUUUUCAGGACGACCAA hit 168 : 3805 3780 (rev) 30.83 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA G::CUUUUCAG::C ACCAA 1363 CCAAACGUCCUUUUCAGGACGACCAA 1388 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #49325,sp|X52576.1|DHHIST D. HYDEI HISTONE GENES ----isReversed: 1 ----hitSequence: AAAUCGGUCCUUUUCAGGACCACAAU hit 169 : 2136 2111 (rev) 27.14 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GG::CUUUUCAG::CCAC A 3032 AAAUCGGUCCUUUUCAGGACCACAAU 3057 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #49326,sp|X17072.1|DHHISTON Drosophila hydei histone DNA repeat unit with genes for histones H1, H3, H4, H2A and H2B ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAA hit 170 : 3256 3281 (fwd) 30.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCAA 3256 CAAUCGGUCCUUUUCAGGACCACCAA 3281 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #49326,sp|X17072.1|DHHISTON Drosophila hydei histone DNA repeat unit with genes for histones H1, H3, H4, H2A and H2B ----isReversed: 0 ----hitSequence: CAAAAGGCCCUUUUCAGGGCCACAAA hit 171 : 4855 4880 (fwd) 38.33 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AAAGGC:CUUUUCAG:GCCAC AA 4855 CAAAAGGCCCUUUUCAGGGCCACAAA 4880 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #49326,sp|X17072.1|DHHISTON Drosophila hydei histone DNA repeat unit with genes for histones H1, H3, H4, H2A and H2B ----isReversed: 1 ----hitSequence: CCAAACGUCCUUUUCAGGACGACCAA hit 172 : 3796 3771 (rev) 30.83 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA G::CUUUUCAG::C ACCAA 1358 CCAAACGUCCUUUUCAGGACGACCAA 1383 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #49326,sp|X17072.1|DHHISTON Drosophila hydei histone DNA repeat unit with genes for histones H1, H3, H4, H2A and H2B ----isReversed: 1 ----hitSequence: AAAUCGGUCCUUUUCAGGACCACAAU hit 173 : 2137 2112 (rev) 27.14 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GG::CUUUUCAG::CCAC A 3017 AAAUCGGUCCUUUUCAGGACCACAAU 3042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #49447,sp|X07772.1|DIHIST43 Sea star (D.imbricata) histone H4 3' flanking region ----isReversed: 0 ----hitSequence: AAAACGGCUCUAUUCAGAGCCACCAC hit 174 : 25 50 (fwd) 33.97 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUCU UUCAGAGCCACCA 25 AAAACGGCUCUAUUCAGAGCCACCAC 50 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #2833,sp|X60225.1|DMH1H3 D.melanogaster Histone H1-H3 intergenic spacer ----isReversed: 1 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 175 : 1393 1368 (rev) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 8 UAAUCGGUCCUUUUCAGGACCACAAA 33 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #2891,sp|X13788.1|DMHISIG D.melanogaster DNA for histone gene cluster intergenic spacer ----isReversed: 1 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 176 : 1022 997 (rev) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 143 UAAUCGGUCCUUUUCAGGACCACAAA 168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #2893,sp|X14215.1|DMHISTL Drosophila histone gene cluster, L form of repeating unit (5 kB) ----isReversed: 0 ----hitSequence: AAAACGGCCCUUUUCAGGGCCACAAU hit 177 : 817 842 (fwd) 35.94 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGC:CUUUUCAG:GCCAC A 817 AAAACGGCCCUUUUCAGGGCCACAAU 842 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #2893,sp|X14215.1|DMHISTL Drosophila histone gene cluster, L form of repeating unit (5 kB) ----isReversed: 0 ----hitSequence: CAAUCGGUCCUUUUCAGGACCACCAU hit 178 : 4412 4437 (fwd) 28.34 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++A +GG::CUUUUCAG::CCACCA 4412 CAAUCGGUCCUUUUCAGGACCACCAU 4437 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #2893,sp|X14215.1|DMHISTL Drosophila histone gene cluster, L form of repeating unit (5 kB) ----isReversed: 1 ----hitSequence: CAAACCGUCCUUUUCAGGACGACCAA hit 179 : 4806 4781 (rev) 30.59 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+ G::CUUUUCAG::C ACCAA 236 CAAACCGUCCUUUUCAGGACGACCAA 261 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #2893,sp|X14215.1|DMHISTL Drosophila histone gene cluster, L form of repeating unit (5 kB) ----isReversed: 1 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 180 : 3318 3293 (rev) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 1724 UAAUCGGUCCUUUUCAGGACCACAAA 1749 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #2911,sp|Z29082.1|DMHOMEO D.melanogaster (Oregon) Lbe homeodomain region ----isReversed: 0 ----hitSequence: UAAUCGGCUCUUUUAAGAGCCACCAA hit 181 : 1040 1065 (fwd) 31.13 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GGCUCUUUU AGAGCCACCAA 1040 UAAUCGGCUCUUUUAAGAGCCACCAA 1065 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5678,sp|AB003784.1|DSAB3784 Fruitfly DNA for Histone H3, complete cds. ----isReversed: 0 ----hitSequence: UAAUCGGUCCUUUUCAGGACCACAAA hit 182 : 786 811 (fwd) 27.74 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +A +GG::CUUUUCAG::CCAC AA 786 UAAUCGGUCCUUUUCAGGACCACAAA 811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6651,sp|U82925.1|DVU82925 Drosophila virilis histone H3 (H3) gene, partial cds. ----isReversed: 0 ----hitSequence: AAAUCGGUCCUUUUCAGGACCACAAA hit 183 : 187 212 (fwd) 29.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GG::CUUUUCAG::CCAC AA 187 AAAUCGGUCCUUUUCAGGACCACAAA 212 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6652,sp|U82926.1|DVU82926 Drosophila virilis histone gene cluster, untranslated sequence. ----isReversed: 1 ----hitSequence: CCAACCGUCCUUUUCAGGACGACCAA hit 184 : 121 96 (rev) 30.68 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+ G::CUUUUCAG::C ACCAA 20 CCAACCGUCCUUUUCAGGACGACCAA 45 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6661,sp|U88330.1|DVU88330 Drosophila virilis histone H2B (H2B) gene and histone H3 (H3) gene, partial cds. ----isReversed: 0 ----hitSequence: CAAAAGGCCCUUUUCAGGGCCACAAA hit 185 : 253 278 (fwd) 38.33 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AAAGGC:CUUUUCAG:GCCAC AA 253 CAAAAGGCCCUUUUCAGGGCCACAAA 278 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6662,sp|U88331.1|DVU88331 Drosophila virilis histone H2B (H2B) gene and histone H3 (H3) gene, partial cds. ----isReversed: 0 ----hitSequence: CAAAAGGCCCUUUUCAGGGCCACAAA hit 186 : 251 276 (fwd) 38.33 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AAAGGC:CUUUUCAG:GCCAC AA 251 CAAAAGGCCCUUUUCAGGGCCACAAA 276 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6662,sp|U88331.1|DVU88331 Drosophila virilis histone H2B (H2B) gene and histone H3 (H3) gene, partial cds. ----isReversed: 1 ----hitSequence: AAAUCGGUCCUUUUCAGGACCACAAA hit 187 : 937 912 (rev) 29.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GG::CUUUUCAG::CCAC AA 65 AAAUCGGUCCUUUUCAGGACCACAAA 90 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #7588,sp|L41834.1|EMNUPR Ensis minor (clone 1/6) nuclear protein mRNA, complete cds. ----isReversed: 0 ----hitSequence: AACCCGGCCCUCUUAAGGGCCACCAA hit 188 : 1559 1584 (fwd) 27.46 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+ +GGC:CU UU AG:GCCACCAA 1559 AACCCGGCCCUCUUAAGGGCCACCAA 1584 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #9821,sp|Z46225.1|HTHISH2B H.tubulosa gene encoding histone H2B ----isReversed: 0 ----hitSequence: CCAACGGCUCUUUUAAGGGCCAUCAA hit 189 : 538 563 (fwd) 28.49 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC CUUUU AG GCCA CAA 538 CCAACGGCUCUUUUAAGGGCCAUCAA 563 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #9822,sp|Z46226.1|HTHISH4 H.tubulosa gene encoding histone H4 ----isReversed: 0 ----hitSequence: CCAACGGCUCUUUUAAGGGCCAUCAA hit 190 : 766 791 (fwd) 28.49 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGC CUUUU AG GCCA CAA 766 CCAACGGCUCUUUUAAGGGCCAUCAA 791 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11517,sp|X00593.1|LPH3H4 Lytechinus pictus H3 and H4 gene ----isReversed: 0 ----hitSequence: AAACCGGCUCUUUUCAGAGCCACUAA hit 191 : 1913 1938 (fwd) 35.12 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGCUCUUUUCAGAGCCAC AA 1913 AAACCGGCUCUUUUCAGAGCCACUAA 1938 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11517,sp|X00593.1|LPH3H4 Lytechinus pictus H3 and H4 gene ----isReversed: 1 ----hitSequence: AAACCGGCUCUUUUCAGAGCCACCAA hit 192 : 82 57 (rev) 36.93 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGCUCUUUUCAGAGCCACCAA 1948 AAACCGGCUCUUUUCAGAGCCACCAA 1973 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11518,sp|X00628.1|LPH3PLPA Lytechinus pictus early stage H3 gene from pLpa ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUCAGAGCCACCAU hit 193 : 551 576 (fwd) 37.85 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUCUUUUCAGAGCCACCA 551 AAAACGGCUCUUUUCAGAGCCACCAU 576 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11526,sp|X04488.1|LPHISH15 Lytechinus pictus late histone H1 gene ----isReversed: 0 ----hitSequence: CCAACGGCUCUUAUCAGAGCCACCCA hit 194 : 1128 1153 (fwd) 36.69 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGCUCUU UCAGAGCCACC+A 1128 CCAACGGCUCUUAUCAGAGCCACCCA 1153 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11528,sp|X04384.1|LPHISH2B Sea urchin (L.pictus) gene for testis specific histone H2B-2 ----isReversed: 0 ----hitSequence: CAAACGGCUCUUAUCAGAGCCACCAA hit 195 : 652 677 (fwd) 37.40 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUU UCAGAGCCACCAA 652 CAAACGGCUCUUAUCAGAGCCACCAA 677 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11529,sp|J01175.1|LPHISL34 Sea urchin (L.pictus) late-stage histone H3 and H4 genes. ----isReversed: 1 ----hitSequence: UAAACGGCUCUUUUUAGAACCACCAA hit 196 : 368 343 (rev) 30.48 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +AA+GG UCUUUU AGA CCACCAA 1766 UAAACGGCUCUUUUUAGAACCACCAA 1791 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12153,sp|AJ416421.1|MCA416421 Mytilus californianus h1 gene for histone H1 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 197 : 911 936 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 911 CCAAAAGCCCUUUUAAGGGCUACCCA 936 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12177,sp|AJ416422.1|MCH416422 Mytilus chilensis h1 gene for histone H1 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 198 : 903 928 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 903 CCAAAAGCCCUUUUAAGGGCUACCCA 928 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12326,sp|AJ224069.1|MEAJ4069 Mytilus edulis H1 histone gene, clone pME09 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 199 : 975 1000 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 975 CCAAAAGCCCUUUUAAGGGCUACCCA 1000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12327,sp|AJ224070.1|MEAJ4070 Mytilus edulis H1 histone gene, clone pME10 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 200 : 975 1000 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 975 CCAAAAGCCCUUUUAAGGGCUACCCA 1000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12328,sp|AJ224071.1|MEAJ4071 Mytilus edulis H1 histone gene, clone pME12 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 201 : 975 1000 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 975 CCAAAAGCCCUUUUAAGGGCUACCCA 1000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12329,sp|AJ224072.1|MEAJ4072 Mytilus edulis H1 histone gene, clone pME13 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 202 : 975 1000 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 975 CCAAAAGCCCUUUUAAGGGCUACCCA 1000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12330,sp|AJ224073.1|MEAJ4073 Mytilus edulis H1 histone gene, clone pME21 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 203 : 975 1000 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 975 CCAAAAGCCCUUUUAAGGGCUACCCA 1000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12331,sp|AJ224074.1|MEAJ4074 Mytilus edulis H1 histone gene, clone pME33 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 204 : 975 1000 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 975 CCAAAAGCCCUUUUAAGGGCUACCCA 1000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12332,sp|AJ224075.1|MEAJ4075 Mytilus edulis H1 histone gene, clone pME37 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 205 : 975 1000 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 975 CCAAAAGCCCUUUUAAGGGCUACCCA 1000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12333,sp|AJ224076.1|MEAJ4076 Mytilus edulis H1 histone gene, clone pME40 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 206 : 975 1000 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 975 CCAAAAGCCCUUUUAAGGGCUACCCA 1000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12334,sp|AJ224077.1|MEAJ4077 Mytilus edulis H1 histone gene, clone pME49 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 207 : 975 1000 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 975 CCAAAAGCCCUUUUAAGGGCUACCCA 1000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12354,sp|AJ416423.1|MED416423 Mytilus edulis h1 gene for histone H1 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 208 : 911 936 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 911 CCAAAAGCCCUUUUAAGGGCUACCCA 936 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12363,sp|AJ492923.1|MED492923 Mytilus edulis h4 gene, h2B gene, h2A gene and h3 gene, cluster UW06 ----isReversed: 0 ----hitSequence: ACAACGGCCCUUUUCAGGGCCACCAA hit 209 : 997 1022 (fwd) 39.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:CUUUUCAG:GCCACCAA 997 ACAACGGCCCUUUUCAGGGCCACCAA 1022 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12363,sp|AJ492923.1|MED492923 Mytilus edulis h4 gene, h2B gene, h2A gene and h3 gene, cluster UW06 ----isReversed: 0 ----hitSequence: ACAACGGCCCUUUUCAGGGCCACCAA hit 210 : 2874 2899 (fwd) 39.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:CUUUUCAG:GCCACCAA 2874 ACAACGGCCCUUUUCAGGGCCACCAA 2899 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12363,sp|AJ492923.1|MED492923 Mytilus edulis h4 gene, h2B gene, h2A gene and h3 gene, cluster UW06 ----isReversed: 0 ----hitSequence: AUAACGGCCCUUUUCAGGGCCACCAA hit 211 : 4562 4587 (fwd) 34.58 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A AA+GGC:CUUUUCAG:GCCACCAA 4562 AUAACGGCCCUUUUCAGGGCCACCAA 4587 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12363,sp|AJ492923.1|MED492923 Mytilus edulis h4 gene, h2B gene, h2A gene and h3 gene, cluster UW06 ----isReversed: 1 ----hitSequence: CAAACGGCCCUUUUCAGGGCCACCAA hit 212 : 1793 1768 (rev) 39.50 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGC:CUUUUCAG:GCCACCAA 3836 CAAACGGCCCUUUUCAGGGCCACCAA 3861 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12364,sp|AJ492924.1|MED492924 Mytilus edulis h4 gene, h2B gene, h2A gene and h3 gene, cluster UW15 ----isReversed: 0 ----hitSequence: ACAACGGCCCUUUUCAGGGCCACCAA hit 213 : 499 524 (fwd) 39.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:CUUUUCAG:GCCACCAA 499 ACAACGGCCCUUUUCAGGGCCACCAA 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12364,sp|AJ492924.1|MED492924 Mytilus edulis h4 gene, h2B gene, h2A gene and h3 gene, cluster UW15 ----isReversed: 0 ----hitSequence: ACAACGGCCCUUUUCAGGGCCACCAA hit 214 : 2291 2316 (fwd) 39.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:CUUUUCAG:GCCACCAA 2291 ACAACGGCCCUUUUCAGGGCCACCAA 2316 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12364,sp|AJ492924.1|MED492924 Mytilus edulis h4 gene, h2B gene, h2A gene and h3 gene, cluster UW15 ----isReversed: 0 ----hitSequence: AUAACGGCCCUUUUAAGGGCCACCAA hit 215 : 4168 4193 (fwd) 33.21 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A AA+GGC:CUUUU AG:GCCACCAA 4168 AUAACGGCCCUUUUAAGGGCCACCAA 4193 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12364,sp|AJ492924.1|MED492924 Mytilus edulis h4 gene, h2B gene, h2A gene and h3 gene, cluster UW15 ----isReversed: 1 ----hitSequence: CAAACGGCCCUUUUCAGGGCCACCAA hit 216 : 1209 1184 (rev) 39.50 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGC:CUUUUCAG:GCCACCAA 4460 CAAACGGCCCUUUUCAGGGCCACCAA 4485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12365,sp|AJ492925.1|MED492925 Mytilus edulis h4 gene for histone H4 and h3 gene for histone H3, cluster UW27 ----isReversed: 0 ----hitSequence: ACAACGGCCCUUUUCAGGGCCACCAA hit 217 : 1247 1272 (fwd) 39.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:CUUUUCAG:GCCACCAA 1247 ACAACGGCCCUUUUCAGGGCCACCAA 1272 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12365,sp|AJ492925.1|MED492925 Mytilus edulis h4 gene for histone H4 and h3 gene for histone H3, cluster UW27 ----isReversed: 0 ----hitSequence: AUAACGGCCCUUUUCAGGGCCACCAA hit 218 : 3024 3049 (fwd) 34.58 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A AA+GGC:CUUUUCAG:GCCACCAA 3024 AUAACGGCCCUUUUCAGGGCCACCAA 3049 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12437,sp|AJ416424.1|MGA416424 Mytilus galloprovincialis h1 gene for histone H1 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 219 : 910 935 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 910 CCAAAAGCCCUUUUAAGGGCUACCCA 935 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13058,sp|AJ416425.1|MTR416425 Mytilus trossulus h1 gene for histone H1 ----isReversed: 0 ----hitSequence: CCAAAAGCCCUUUUAAGGGCUACCCA hit 220 : 910 935 (fwd) 31.51 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAAA:GC:CUUUU AG:GC:ACC+A 910 CCAAAAGCCCUUUUAAGGGCUACCCA 935 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13644,sp|AJ494848.1|ODI494848 Oikopleura dioica H3.1 gene, H4.1 gene, H1.1 gene, and H2A.1 gene ----isReversed: 0 ----hitSequence: AACCCGGCCCUUUUUAGGGCCACAAA hit 221 : 1505 1530 (fwd) 30.18 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+ +GGC:CUUUU AG:GCCAC AA 1505 AACCCGGCCCUUUUUAGGGCCACAAA 1530 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13644,sp|AJ494848.1|ODI494848 Oikopleura dioica H3.1 gene, H4.1 gene, H1.1 gene, and H2A.1 gene ----isReversed: 0 ----hitSequence: UAAAUGGCUCUUUUCAGAGCCACAAA hit 222 : 2742 2767 (fwd) 32.12 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +AA GGCUCUUUUCAGAGCCAC AA 2742 UAAAUGGCUCUUUUCAGAGCCACAAA 2767 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13644,sp|AJ494848.1|ODI494848 Oikopleura dioica H3.1 gene, H4.1 gene, H1.1 gene, and H2A.1 gene ----isReversed: 0 ----hitSequence: AAACCGGCCCUUUUUAGGGCCACAUA hit 223 : 4107 4132 (fwd) 30.15 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUU AG:GCCAC A 4107 AAACCGGCCCUUUUUAGGGCCACAUA 4132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13644,sp|AJ494848.1|ODI494848 Oikopleura dioica H3.1 gene, H4.1 gene, H1.1 gene, and H2A.1 gene ----isReversed: 1 ----hitSequence: AAAUCGGCCCUUUUUAGGGCCACAAA hit 224 : 3110 3085 (rev) 30.23 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUU AG:GCCAC AA 2596 AAAUCGGCCCUUUUUAGGGCCACAAA 2621 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13644,sp|AJ494848.1|ODI494848 Oikopleura dioica H3.1 gene, H4.1 gene, H1.1 gene, and H2A.1 gene ----isReversed: 1 ----hitSequence: AAACCGGCCCUUUUCAGGGCCACAAA hit 225 : 514 489 (rev) 35.02 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUUCAG:GCCAC AA 5192 AAACCGGCCCUUUUCAGGGCCACAAA 5217 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13645,sp|AJ494849.1|ODI494849 Oikopleura dioica H2A.3 gene for histone h2A.3 ----isReversed: 0 ----hitSequence: AAACAGGCCCUUUUAAGGGCCACAGU hit 226 : 490 515 (fwd) 26.11 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A AGGC:CUUUU AG:GCCAC 490 AAACAGGCCCUUUUAAGGGCCACAGU 515 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13646,sp|AJ494850.1|ODI494850 Oikopleura dioica H3.2 gene for histone h3.2 ----isReversed: 0 ----hitSequence: AAACCGGCCCUUUUUAGGGCCACAAA hit 227 : 894 919 (fwd) 32.90 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUU AG:GCCAC AA 894 AAACCGGCCCUUUUUAGGGCCACAAA 919 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13647,sp|AJ494851.1|ODI494851 Oikopleura dioica partial H2A.2 gene for histone h2A.2 ----isReversed: 0 ----hitSequence: AAACCGGCCCUUUUAAGGGCCAUAUA hit 228 : 853 878 (fwd) 24.98 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUU AG:GCCA A 853 AAACCGGCCCUUUUAAGGGCCAUAUA 878 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13647,sp|AJ494851.1|ODI494851 Oikopleura dioica partial H2A.2 gene for histone h2A.2 ----isReversed: 0 ----hitSequence: AAACCGGCCCUUUUAAGGGCCACAUA hit 229 : 1625 1650 (fwd) 30.90 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUU AG:GCCAC A 1625 AAACCGGCCCUUUUAAGGGCCACAUA 1650 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13648,sp|AJ494852.1|ODI494852 Oikopleura dioica partial H2A.4 gene for histone H2A.4 ----isReversed: 0 ----hitSequence: AAACAGGCCCUUUUUAGGGCCACAAU hit 230 : 1548 1573 (fwd) 30.68 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A AGGC:CUUUU AG:GCCAC A 1548 AAACAGGCCCUUUUUAGGGCCACAAU 1573 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13648,sp|AJ494852.1|ODI494852 Oikopleura dioica partial H2A.4 gene for histone H2A.4 ----isReversed: 1 ----hitSequence: AAACCGGCCCUUUUCAGGGCCACAAA hit 231 : 518 493 (rev) 35.02 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUUCAG:GCCAC AA 1486 AAACCGGCCCUUUUCAGGGCCACAAA 1511 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13649,sp|AJ494853.1|ODI494853 Oikopleura dioica mRNA for histone H2A.1a (H2A.1a gene) ----isReversed: 0 ----hitSequence: AAACCGGCCCUUUUUAGGGCCACAAA hit 232 : 400 425 (fwd) 32.90 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUU AG:GCCAC AA 400 AAACCGGCCCUUUUUAGGGCCACAAA 425 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13650,sp|AJ494854.1|ODI494854 Oikopleura dioica partial mRNA for histone h2A.1b (H2a.1b gene) ----isReversed: 0 ----hitSequence: AAACCGGCCCUUUUUAGGGCCACAAA hit 233 : 374 399 (fwd) 32.90 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUU AG:GCCAC AA 374 AAACCGGCCCUUUUUAGGGCCACAAA 399 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13651,sp|AJ494855.1|ODI494855 Oikopleura dioica partial mRNA for histone h4 (H4 gene) ----isReversed: 0 ----hitSequence: AAACCGGCCCUUUUUAGGGCCACAAA hit 234 : 345 370 (fwd) 32.90 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGC:CUUUU AG:GCCAC AA 345 AAACCGGCCCUUUUUAGGGCCACAAA 370 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13652,sp|AJ494856.1|ODI494856 Oikopleura dioica partial mRNA for histone h1.2 (H1.2 gene) ----isReversed: 0 ----hitSequence: UAAAUGGCUCUUUUCAGAGCCACAAA hit 235 : 529 554 (fwd) 32.12 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +AA GGCUCUUUUCAGAGCCAC AA 529 UAAAUGGCUCUUUUCAGAGCCACAAA 554 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #14655,sp|X54112.1|PBH4H3 P.brevispinus histone genes H4 and H3 ----isReversed: 0 ----hitSequence: ACAACGGCUCUUUUCAGAGCCACCAC hit 236 : 452 477 (fwd) 38.85 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUCUUUUCAGAGCCACCA 452 ACAACGGCUCUUUUCAGAGCCACCAC 477 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #14655,sp|X54112.1|PBH4H3 P.brevispinus histone genes H4 and H3 ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUCAGAGCCACCAC hit 237 : 1666 1691 (fwd) 38.76 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUCUUUUCAGAGCCACCA 1666 AAAACGGCUCUUUUCAGAGCCACCAC 1691 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #14657,sp|X07771.1|PBHIST43 Sea star (P.brevispinus) histone H4 3' flanking region ----isReversed: 0 ----hitSequence: ACAACGGCUCUUUUCAGAGCCACCAC hit 238 : 6 31 (fwd) 38.85 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUCUUUUCAGAGCCACCA 6 ACAACGGCUCUUUUCAGAGCCACCAC 31 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #14977,sp|X53330.1|PDHISTCL P.dumerilii histone gene cluster for core histones H2A, H2B, H3 and H4 ----isReversed: 1 ----hitSequence: ACAACCGCCAUUUUAAUGGCCACCAA hit 239 : 2229 2204 (rev) 26.20 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+ GC::UUUU A::GC ACCAA 3824 ACAACCGCCAUUUUAAUGGCCACCAA 3849 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17038,sp|X54114.1|PHH4H3 P.helianthoides histone genes H4 and H3 ----isReversed: 0 ----hitSequence: ACAACGGCUCUUUUCAGAGCCACCAA hit 240 : 494 519 (fwd) 40.31 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUCUUUUCAGAGCCACCAA 494 ACAACGGCUCUUUUCAGAGCCACCAA 519 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17038,sp|X54114.1|PHH4H3 P.helianthoides histone genes H4 and H3 ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUCAGAGCCACCAC hit 241 : 1577 1602 (fwd) 38.76 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUCUUUUCAGAGCCACCA 1577 AAAACGGCUCUUUUCAGAGCCACCAC 1602 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17250,sp|Y09062.1|PLH2AGENE P.lividus H2A gene ----isReversed: 0 ----hitSequence: UCAACGGCCCUUAUCAGGGCCACCAA hit 242 : 690 715 (fwd) 35.23 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 CAA+GGC:CUU UCAG:GCCACCAA 690 UCAACGGCCCUUAUCAGGGCCACCAA 715 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17258,sp|M25281.1|PLHISH2H P.lividus histone H3 and H2A genes, complete cds. ----isReversed: 0 ----hitSequence: CAAACGGCUCUUUUCAGAGCCACCAC hit 243 : 899 924 (fwd) 38.64 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUUCAGAGCCACCA 899 CAAACGGCUCUUUUCAGAGCCACCAC 924 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17258,sp|M25281.1|PLHISH2H P.lividus histone H3 and H2A genes, complete cds. ----isReversed: 0 ----hitSequence: UCAACGGCCCUUAUCAGGGCCACCAA hit 244 : 2133 2158 (fwd) 35.23 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 CAA+GGC:CUU UCAG:GCCACCAA 2133 UCAACGGCCCUUAUCAGGGCCACCAA 2158 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17363,sp|Y16588.1|PLY16588 Paracentrotus lividus histone H4 gene, early subtype ----isReversed: 0 ----hitSequence: AUAACGGCUCUUUUCAGAGCCACCAA hit 245 : 685 710 (fwd) 35.18 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A AA+GGCUCUUUUCAGAGCCACCAA 685 AUAACGGCUCUUUUCAGAGCCACCAA 710 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17468,sp|V01143.1|PMHIS7 Sea urchin (P. miliaris) gene for histones H4, H2B, H3, H2A and H1 (in that order, containing many sequence gaps). (see also

>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUCUUUUCAGAGCCACCA 5499 ACAACGGCUCUUUUCAGAGCCACCAC 5524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17474,sp|M25169.1|PMHISAAE Sea urchin histone gene termination region of h22. ----isReversed: 0 ----hitSequence: AUAACGGCUCUUUUCAGAGCCACCAA hit 247 : 24 49 (fwd) 35.18 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A AA+GGCUCUUUUCAGAGCCACCAA 24 AUAACGGCUCUUUUCAGAGCCACCAA 49 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17475,sp|M25170.1|PMHISAAF Sea urchin histone gene termination region of h22. ----isReversed: 0 ----hitSequence: CAAACGGCUCUUUUCAGAGCCACCAC hit 248 : 32 57 (fwd) 38.64 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUUCAGAGCCACCA 32 CAAACGGCUCUUUUCAGAGCCACCAC 57 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17476,sp|M10556.1|PMHISB1 P.miliaris histone H4 gene, clone h19, complete cds. ----isReversed: 0 ----hitSequence: CAAACGGCUCUUUUCAGAGCCACCAA hit 249 : 737 762 (fwd) 40.10 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUUCAGAGCCACCAA 737 CAAACGGCUCUUUUCAGAGCCACCAA 762 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17477,sp|M10557.1|PMHISB21 P.miliaris histone H2B gene, clone h19, complete cds, clone h19. ----isReversed: 0 ----hitSequence: ACAACGGCCCUUUUCAGGGCCACACA hit 250 : 790 815 (fwd) 37.60 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:CUUUUCAG:GCCAC +A 790 ACAACGGCCCUUUUCAGGGCCACACA 815 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17478,sp|M10558.1|PMHISB3 P.miliaris histone H3 gene, clone h19, complete cds, clone h19. ----isReversed: 0 ----hitSequence: CAAACGGCUCUUUUCAGAGCCACCAC hit 251 : 738 763 (fwd) 38.64 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUUCAGAGCCACCA 738 CAAACGGCUCUUUUCAGAGCCACCAC 763 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17479,sp|M10559.1|PMHISB41 P.miliaris histone H2A gene, clone h19, complete cds, clone h19. ----isReversed: 0 ----hitSequence: UCAACGGCCCUUAUCAGGGCCACCAA hit 252 : 818 843 (fwd) 35.23 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 CAA+GGC:CUU UCAG:GCCACCAA 818 UCAACGGCCCUUAUCAGGGCCACCAA 843 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17480,sp|M10645.1|PMHISB9 Psammechinus miliaris histone H1 gene, clone h19, 3' flank. ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUCAGAGCCACCAA hit 253 : 31 56 (fwd) 40.22 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUCUUUUCAGAGCCACCAA 31 AAAACGGCUCUUUUCAGAGCCACCAA 56 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17481,sp|M12542.1|PMHISH01 Psammechinus miliaris histone H2A precursor, gene, partial cds. ----isReversed: 0 ----hitSequence: ACAACGGCCCUUAUCAGGGCCACCAA hit 254 : 5 30 (fwd) 37.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:CUU UCAG:GCCACCAA 5 ACAACGGCCCUUAUCAGGGCCACCAA 30 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17488,sp|J01178.1|PMHISP03 Psammechinus miliaris early histone H2B gene, complete cds, and partial 5' spacer. ----isReversed: 0 ----hitSequence: ACAACGGCCCUUUUCAGGGCCACCAA hit 255 : 823 848 (fwd) 39.71 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:CUUUUCAG:GCCACCAA 823 ACAACGGCCCUUUUCAGGGCCACCAA 848 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17490,sp|J01182.1|PMHISP05 Psammechinus miliaris histone H2A gene, complete cds. ----isReversed: 0 ----hitSequence: ACAACGGCCCUUAUCAGGGCCACCAA hit 256 : 729 754 (fwd) 37.00 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:CUU UCAG:GCCACCAA 729 ACAACGGCCCUUAUCAGGGCCACCAA 754 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17492,sp|J01184.1|PMHISP07 Psammechinus miliaris histone H1 gene, partial cds. ----isReversed: 0 ----hitSequence: ACAACGGCUCUUUUCAGAGCCACCAC hit 257 : 102 127 (fwd) 38.85 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUCUUUUCAGAGCCACCA 102 ACAACGGCUCUUUUCAGAGCCACCAC 127 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17640,sp|X05620.1|POH2BG3 Sea star histone H2B gene 3'region ----isReversed: 0 ----hitSequence: CAAACGGCUCUUUUCAGAGCCAACAC hit 258 : 58 83 (fwd) 35.63 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUUCAGAGCCA CA 58 CAAACGGCUCUUUUCAGAGCCAACAC 83 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17642,sp|X54113.1|POH4H3 P.ochraceus histone genes H4 and H3 ----isReversed: 0 ----hitSequence: ACAACGGCUCUUUUCAGAGCCACCAC hit 259 : 989 1014 (fwd) 38.85 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUCUUUUCAGAGCCACCA 989 ACAACGGCUCUUUUCAGAGCCACCAC 1014 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17642,sp|X54113.1|POH4H3 P.ochraceus histone genes H4 and H3 ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUCAGAGCCACCAC hit 260 : 2211 2236 (fwd) 38.76 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUCUUUUCAGAGCCACCA 2211 AAAACGGCUCUUUUCAGAGCCACCAC 2236 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19394,sp|S49118.1|S49118 histone H1 [Tigriopus californicus, Genomic, 1680 nt]. ----isReversed: 0 ----hitSequence: ACCCCGGCUCUUUUCAGAGCCAAAAC hit 261 : 1081 1106 (fwd) 28.52 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 AC +GGCUCUUUUCAGAGCCA A 1081 ACCCCGGCUCUUUUCAGAGCCAAAAC 1106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19395,sp|S49144.1|S49144 histone H2B-1, histone H2A [Tigriopus californicus, Genomic, 2280 nt]. ----isReversed: 0 ----hitSequence: CGAAAGGCCCUUUUCAGGGCCAACAA hit 262 : 2148 2173 (fwd) 31.60 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 + AAAGGC:CUUUUCAG:GCCA CAA 2148 CGAAAGGCCCUUUUCAGGGCCAACAA 2173 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19395,sp|S49144.1|S49144 histone H2B-1, histone H2A [Tigriopus californicus, Genomic, 2280 nt]. ----isReversed: 1 ----hitSequence: CAAAAGGCCUUUAUCAAGGCCAAAAC hit 263 : 154 129 (rev) 25.09 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AAAGGC::UU UCA::GCCA A 2127 CAAAAGGCCUUUAUCAAGGCCAAAAC 2152 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19580,sp|S64499.2|S64499 Styela plicata H3 histone and H4 histone genes, complete cds. ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUCAGAGCCACCAA hit 264 : 1145 1170 (fwd) 40.22 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUCUUUUCAGAGCCACCAA 1145 AAAACGGCUCUUUUCAGAGCCACCAA 1170 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19580,sp|S64499.2|S64499 Styela plicata H3 histone and H4 histone genes, complete cds. ----isReversed: 1 ----hitSequence: CAAACGGCUCUUUUCAGAGCCACCCA hit 265 : 159 134 (rev) 39.31 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUUCAGAGCCACC+A 1062 CAAACGGCUCUUUUCAGAGCCACCCA 1087 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19660,sp|S67324.1|S67324 histone gene cluster: histone H3...histone H4 [Acropora formosa=coral, sperms, Genomic, 4 genes, 3764 nt]. ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUAAGAGCACCAAU hit 266 : 431 456 (fwd) 26.70 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+ GCUCUUUU AGAGC C A 431 AAAACGGCUCUUUUAAGAGCACCAAU 456 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19660,sp|S67324.1|S67324 histone gene cluster: histone H3...histone H4 [Acropora formosa=coral, sperms, Genomic, 4 genes, 3764 nt]. ----isReversed: 0 ----hitSequence: AAAACGGCUCUUGUAGGAGCCACCAC hit 267 : 2585 2610 (fwd) 25.53 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUC U U GAGCCACCA 2585 AAAACGGCUCUUGUAGGAGCCACCAC 2610 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19660,sp|S67324.1|S67324 histone gene cluster: histone H3...histone H4 [Acropora formosa=coral, sperms, Genomic, 4 genes, 3764 nt]. ----isReversed: 1 ----hitSequence: AAAACGGCUCUUAUAGGAGCCAACAA hit 268 : 3159 3134 (rev) 27.07 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUC U U GAGCCA CAA 606 AAAACGGCUCUUAUAGGAGCCAACAA 631 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19660,sp|S67324.1|S67324 histone gene cluster: histone H3...histone H4 [Acropora formosa=coral, sperms, Genomic, 4 genes, 3764 nt]. ----isReversed: 1 ----hitSequence: ACAACGGCUCUUUUAGGAGCCAACAC hit 269 : 1432 1407 (rev) 28.40 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUC UUU GAGCCA CA 2333 ACAACGGCUCUUUUAGGAGCCAACAC 2358 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21241,sp|M20314.1|SPH1BL S.purpuratus late histone H1-beta gene, complete cds. ----isReversed: 0 ----hitSequence: CAAACGGCUCUUAUCAGAGCCACCCA hit 270 : 1522 1547 (fwd) 36.60 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUU UCAGAGCCACC+A 1522 CAAACGGCUCUUAUCAGAGCCACCCA 1547 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21245,sp|X00151.1|SPH2B03 Sea urchin transposon TU1 fragment from H2B pseudogene ----isReversed: 0 ----hitSequence: ACAACGGCCCUUUUCUGGGCCACAAA hit 271 : 385 410 (fwd) 32.32 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGC:C UUUC G:GCCAC AA 385 ACAACGGCCCUUUUCUGGGCCACAAA 410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21246,sp|X04681.1|SPH2B1G S. purpuratus gene for sperm specific histone subtype H2B-1 ----isReversed: 0 ----hitSequence: CCAACGGCUCUUUUCAGAGCCACCAA hit 272 : 812 837 (fwd) 40.19 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGCUCUUUUCAGAGCCACCAA 812 CCAACGGCUCUUUUCAGAGCCACCAA 837 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21247,sp|X06642.1|SPH2BAL3 Strongylocentrotus purpuratus late histone genes L3 H2b - H2a ----isReversed: 0 ----hitSequence: ACAACGGCUCUUUUAAGAGCCACCAA hit 273 : 1573 1598 (fwd) 38.94 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUCUUUU AGAGCCACCAA 1573 ACAACGGCUCUUUUAAGAGCCACCAA 1598 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21247,sp|X06642.1|SPH2BAL3 Strongylocentrotus purpuratus late histone genes L3 H2b - H2a ----isReversed: 1 ----hitSequence: CAAACGGUCCUUAUAAGGACCACCAA hit 274 : 248 223 (rev) 32.58 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GG::CUU U AG::CCACCAA 1733 CAAACGGUCCUUAUAAGGACCACCAA 1758 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21250,sp|M32426.1|SPH4AA S.purpuratus H4 histone mRNA, complete cds. ----isReversed: 0 ----hitSequence: CAAACGGCUCUUUUCAGAGCCNCCAA hit 275 : 541 566 (fwd) 36.58 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUUCAGAGCC CCAA 541 CAAACGGCUCUUUUCAGAGCCNCCAA 566 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21251,sp|X06639.1|SPH4L1 Strongylocentrotus purpuratus late histone gene L1 H4 ----isReversed: 0 ----hitSequence: AAACCGGCUCUUUUAAGAGCCACCAA hit 276 : 536 561 (fwd) 35.56 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+A +GGCUCUUUU AGAGCCACCAA 536 AAACCGGCUCUUUUAAGAGCCACCAA 561 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21252,sp|X06641.1|SPH4L2 Strongylocentrotus purpuratus late histone gene L2 H4 ----isReversed: 0 ----hitSequence: ACAACGGCUCUUUUUAGAGCCACCAA hit 277 : 594 619 (fwd) 38.19 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ACAA+GGCUCUUUU AGAGCCACCAA 594 ACAACGGCUCUUUUUAGAGCCACCAA 619 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21254,sp|V01354.1|SPHI01 Sea urchin gene encoding histone H1 ----isReversed: 0 ----hitSequence: AAAACGGCUCUUUUCAGAGCCACCAC hit 278 : 756 781 (fwd) 38.76 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 A+AA+GGCUCUUUUCAGAGCCACCA 756 AAAACGGCUCUUUUCAGAGCCACCAC 781 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21255,sp|V01355.1|SPHIH4 Sea urchin gene for histone H4. ----isReversed: 0 ----hitSequence: CAAACGGCUCUUUUCAGAGCCACCAA hit 279 : 567 592 (fwd) 40.10 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUUCAGAGCCACCAA 567 CAAACGGCUCUUUUCAGAGCCACCAA 592 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21256,sp|V01356.1|SPHIS1 Sea urchin genes for the histones H2B and H3. ----isReversed: 0 ----hitSequence: CAAACGGCUCUUUUCAGAGCCACCAC hit 280 : 1845 1870 (fwd) 38.64 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUUCAGAGCCACCA 1845 CAAACGGCUCUUUUCAGAGCCACCAC 1870 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21259,sp|V01357.1|SPHIS2 Sea urchin (S. purpuratus) gene for histone H2A ----isReversed: 0 ----hitSequence: UCAACGGCCCUUAUCAGGGCCACCAA hit 281 : 479 504 (fwd) 35.23 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 CAA+GGC:CUU UCAG:GCCACCAA 479 UCAACGGCCCUUAUCAGGGCCACCAA 504 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21262,sp|M16033.1|SPHISH1G Sea urchin (S.purpuratus) late histone H1-gamma gene, complete cds. ----isReversed: 0 ----hitSequence: CCAACGGCUCUUAUCAGAGCCACCCA hit 282 : 1139 1164 (fwd) 36.69 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGCUCUU UCAGAGCCACC+A 1139 CCAACGGCUCUUAUCAGAGCCACCCA 1164 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21264,sp|X03952.1|SPHISH34 Sea urchin (S. purpuratus) late embryonic H3 and H4 histone genes ----isReversed: 0 ----hitSequence: CCAACGGCUCUUUUUAGAGCCACCAC hit 283 : 2442 2467 (fwd) 36.61 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 +CAA+GGCUCUUUU AGAGCCACCA 2442 CCAACGGCUCUUUUUAGAGCCACCAC 2467 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21264,sp|X03952.1|SPHISH34 Sea urchin (S. purpuratus) late embryonic H3 and H4 histone genes ----isReversed: 1 ----hitSequence: CAAACGGCUCUUUUUAGAGCCACCAA hit 284 : 649 624 (rev) 37.98 bits :::::<<<<<<____>>>>>>::::: 1 aCAAAGGCuCUUUUCAGaGCCACCAA 26 ++AA+GGCUCUUUU AGAGCCACCAA