params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43303,AY090593.1,1,sp|AY090593.1|AY090593 Arxiozyma telluris RNase MRP snRNA (NME1) gene; partial sequence.,0,0,1,262,78.92,GACCUGGUCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUUAUAAAAUUGUUUAAAUAGACUCAUUAAUUGUCCAUUUUUAUGGGUAAUUGUUGUCCCAUCUCCUCCCUCGUGGGUGGGAUAGAUGGUGUUUUUUCGGUAUUGGAGUUCCUUUAUAUUAUAUAUAUGUAUGAACUCUAAAUCAUAGUUAUGACGAUUGCUCUUUAACAACAUGAUGUACAUUUAUGUGUGUAUCAUAGUUAUUGAGUAACCCAAUGGAGCU,AY090593.1/1-262,1-262,0,261,AY090593.1/1-262 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43304,AY090594.1,1,sp|AY090594.1|AY090594 Kluyveromyces africanus RNase MRP snRNA (NME1) gene; partial sequence.,0,1,2,274,151.79,GGAGUGUUUUACUCAAGUAUGCUUUGGGUUGAAAGUCUCCCACCUGUCAAUGUGCGGAAACGUAGUGAGAUUUAAAAAUUUAAAUUGUUUAAAUCAACUCACUAAGAAUUGGGAAGAUUCUCUUCUCUUUUCUUCACUACCUGGGACUAUCUUUGUCCCGGUGCUUUUCGGUACUGGAGUCUUUAUAGACUCUAAACCAUAGUUAUGACGAUUGCUUUGUUUUCAUUGUUUUUCUCAUGGGAAAACACGAGAACAAGGUAACCCAAUGGAGCU,AY090594.1/2-274,2-274,0,272,AY090594.1/2-274 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43305,AY090595.1,1,sp|AY090595.1|AY090595 Kluyveromyces delphensis RNase MRP snRNA (NME1) gene; partial sequence.,0,2,6,267,120.62,UUAACCUUCAUAUCUGCUUCGGGUCGAAAGUCUCCCACCUGGUCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUUAUUUAAAAUGUUUAAAUCAACUCAUUGGAAAGCUAGCUCUUUCCCACAGUCCUGGGCUGUUUAAUAAACUCCCAGUCGUAUCUUUUCGGUACUGAGGCCCCAGAAAUGGGUUUCAAACCAUAGUUAUGACGAUUGCGGUUUUGCAGAAUUUUAGUAUUCUGGAUAACCGUAACCCAAUGGGGGCU,AY090595.1/6-267,6-267,0,261,AY090595.1/6-267 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43306,AY090596.1,1,sp|AY090596.1|AY090596 Kluyveromyces lactis RNase MRP snRNA (NME1) gene; partial sequence.,0,3,15,361,152.19,AUCGUCACUGAUCGAAGCUUACAUAAGGAACGGAUUUUAUCUGUUCAAUUGAAAUGAUAUCAUUUCUAUAGCUUUGGGUAGAAAGUCUCCGACCAGUCCGUAAGCGGAAACGUAAUGAGAUUUAAAAACUUUUCAAAUGUUUAAAUCAACUCAUUAAUCGUGUUGGUUUUCUGUCACGGUUUCUAUCCAGAGGCUGUUUUAGAAGCCUCUGUGUCUUGGGUACUGAAGUAUUUCUUUACUUUAAACGAAAGUUAUGACGAUUGCCCGAGCGUUUUUAUCUCUUUUUUUGUUACUUCUGUUUACAGGGGUGAUUAGGGAGGAGGUAGCUUGGGUAACCCAAUGGAGCU,AY090596.1/15-361,15-361,0,346,AY090596.1/15-361 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43307,AY090597.1,1,sp|AY090597.1|AY090597 Saccharomyces barnettii RNase MRP snRNA (NME1) gene; partial sequence.,0,4,1,294,123.81,AUGCUCUGGGCAUGAAAGUCUCCCACCUGACCGUAUGCGGAAAACGCAGUGAGAUUUAAAAAUUUUUACAAUGUUUAAAUCAACUCACUUGGACGUAUCUGUUUUGCAUAUUCUCUCUCUCUCUGCACCCUUUGGGUACCUAGAGUGGGAGGAUUGUUGAAUUGUACGUCUAGUAUUGUCCUGGCAAGUUUAAUACUUGACAGUGUAUAUUUCGGUAUUGGGACCUUGUUAGGUCCUAAACGAUAGUUAUGACGAUUGCCUAAUAUUUUUCUUAUUAGGUAACCCAAUGGAGCU,AY090597.1/1-294,1-294,0,293,AY090597.1/1-294 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43308,AY090598.1,1,sp|AY090598.1|AY090598 Saccharomyces bayanus RNase MRP snRNA (NME1) gene; partial sequence.,0,5,1,305,219.29,AUCGUCACUAAUCGAAGCUUACAAAAAUGGAGUAAAGGAAUUUUUCUUCUUACUCAAUAUUAAUGCUUUGGGUUGAAAGUCUCCCACCAAUUCAUAUGCGGAAAACGUAAUGAGAUUUAAAAAAUUUAAAUUCUUUAAAUCAACUCAUUAAGAGAAAUAUCUUUAGAUAUUUCUCUUCUUGACCCAGUACUCUGUUACAGGAGCGCUGGUGUUUUCUUCGGUACUGGAUUCCUUAUAUAUGGAAUCUAAACCAUAGUUAUGACGAUUGCUCUUUCCCAUGCUGGAUCGAGUAACCCAAUGGAGCU,AY090598.1/1-305,1-305,0,304,AY090598.1/1-305 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43309,AY090599.1,1,sp|AY090599.1|AY090599 Saccharomyces castellii RNase MRP snRNA (NME1) gene; partial sequence.,0,6,1,215,99.44,CACCAAUUCAUAUGCGGAAAACGUAAUAAGAUUUAAAAAUUUUAAAUUGUUUAAAUCAACUUAUUAAGAAAGUUUUACAUUUUCUUCUAGACCUAGGAUGUCUUUGCAUGUCCUGGUGUUAUCUUCGGUACUGAGAUCGAAAGUUAUUUGGAUCUUAAACGAUAGUCAUGACGAUUGCUUUUCCUUUUUAACAAGGUAAGUAACCCAAUGGAGCU,AY090599.1/1-215,1-215,0,214,AY090599.1/1-215 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43310,AY090600.1,1,sp|AY090600.1|AY090600 Saccharomyces dairenensis RNase MRP snRNA (NME1) gene; partial sequence.,0,7,1,345,181.84,AUCGUCACUGAUCGAAGCUUACAAAAUUGGAGUUCUCAUUUCAUUCAUUGAAUGAAAUGAACUGAACUCAUCACUAUGCUUUGGGUUGAAAGUCUCCCACCAGGUCAUAUGCGGAAAACGUAAUAAGAUUUAAAAAUUUUAAAAUCUUUAAAUCAACUUAUUAAAGUUUGAAAAAGCUAUCAUCAGAUUGUUUUUUCUUACUUUCCCGACUUGAAUCUUCUUUGAAUGAUUCAAUGUUUUCUUCGGUAUCGAGAUCCCCUUUUCAAUGGAUCUCAAACCAUAGUCAUGACGAUUGCUGUACAAAAUUACAUUUGUUUGUCAUUUGUAUGGUAACCCAAUGGAGCU,AY090600.1/1-345,1-345,0,344,AY090600.1/1-345 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43311,AY090601.1,1,sp|AY090601.1|AY090601 Saccharomyces cerevisiae var. diastaticus RNase MRP snRNA (NME1) gene; partial sequence.,0,8,1,284,196.12,AUCGUCACAAAUCGAAGCUUACAAAAUGGAGUAAAAUUUUUUUUACUCAGUAAUAUGCUUUGGGUUGAAAGUCUCCCACCAAUUCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUUUAAAUUGUUUAAAUCAACUCAUUAAGGAGGAUGCCCUUGGGUAUUCUGCUUCUUGACCUGGUACCUCUAUUGCAGGGUACUGGUGUUUUCUUCGGUACUGGAUUCCGUUUGUAUGGAAUCUAAACCAUAGUUAUGACGAUUGCUCUUUCCCGUGCUGGAUCGAGUA,AY090601.1/1-284,1-284,0,283,AY090601.1/1-284 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43312,AY090602.1,1,sp|AY090602.1|AY090602 Saccharomyces globosus RNase MRP snRNA (NME1) gene; partial sequence.,0,9,17,309,209.46,AUCGUCACUUAUCGAAGCUUACACAAAGAGUCUAUUAGAUUCAAAUUAUGCUUUGGGCUGAAAGUCUCCCACCUGUUCAUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUUUUAAAUUCUUUAAAUCAACUCAUUAGGUUGGUCCUUUUUGGAUCAAUCUGCUGACCUAGGAUUCACUUUGUUGAUUUCCUAGUGUUUUCUUCGGUAUAGAAAUGUUUUUACAUUUCAAACCAUAGUUAUGACGAUUGCUUUUAUCCUUUUCUUUUGAUUGGAUGAAGUAACCCAAUGGAGCU,AY090602.1/17-309,17-309,0,292,AY090602.1/17-309 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43313,AY090603.1,1,sp|AY090603.1|AY090603 Saccharomyces kluyveri RNase MRP snRNA (NME1) gene; partial sequence.,0,10,1,258,156.27,AUCGUCACUGAUCGAAGCUUACAAAAGGAUUCCCUCAGGAAUCACCAAUGCUUUGGGUUGAAAGUCUCCCACCUGGCCGUAUGCGGAAAACGCAAUGAGAUUUAAAAAUUUUUAAAACUGUUUAAAUCAACUCAUUAGAGAUGCGAUAGUGUCUCUGUUGUCCCGGAAGAUUUACUCUUCUGGUGUUUUCUUCGGUAUGGAAGUCUUAUUGACUUCAAACCAUAGUUAUGACGAUUGUCCCUGCUUUUUGUAGGGGUA,AY090603.1/1-258,1-258,0,257,AY090603.1/1-258 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43314,AY090604.1,1,sp|AY090604.1|AY090604 Saccharomyces norbensis RNase MRP snRNA (NME1) gene; partial sequence.,0,11,1,297,224.73,AUCGUCACAAAUCGAAGCUUACAAAAUGGAGUAAAAUUUUUUUUACUCAGUAAUAUGCUUUGGGUUGAAAGUCUCCCACCAAUUCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUCUAAAUUGUUUAAAUCAACUCAUUAAGGAGGAUGCCCUUGGGUAUUCUGCUUCUUGACCUGGUACCUCUAUUGCAGGGUACUGGUGUUUUCUUCGGUACUGGAUUCCGUUUGUAUGGAAUCUAAACCAUAGUUAUGACGAUUGCUCUUUCCCGUGCUGGAUCGAGUAACCCAAUGGAGCU,AY090604.1/1-297,1-297,0,296,AY090604.1/1-297 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43315,AY090605.1,1,sp|AY090605.1|AY090605 Saccharomyces pastorianus RNase MRP snRNA (NME1) gene; partial sequence.,0,12,1,305,226.48,AUCGUCACUAAUCGAAGCUUACAAAAAUGGAGUAAAGGAAUUUUUUCCUCACUCAAUAAUAAUGCUUUGGGUUGAAAGUCUCCCACCAAUUCAUAUGCGGAAAACGUAAUGAGAUUUAAAAAAUUUAAAUUCUUUAAAUCAACUCAUUAAGAGGAAUAUCUUUGGAUAUUUUUCUUCUUGACCUGGCACCUCUAUUACAGGAGUGCUGGUGUUUUCUUCGGUACUGGAUUCCUUAUAUAUGGAAUCUAAACCAUAGUUAUGACGAUUGCUCUUUCCCAUGCUGGAUUGAGUAACCCAAUGGAGCU,AY090605.1/1-305,1-305,0,304,AY090605.1/1-305 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43316,AY090606.1,1,sp|AY090606.1|AY090606 Saccharomyces servazzii RNase MRP snRNA (NME1) gene; partial sequence.,0,13,1,300,205.38,AUCGUCACUAAUCGAAGCUUGCACAAUUGGAGUUGUUUUGACUCAGAAUUAAAGCUUUGGGGAAAGUCUCCGACCUGAACGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUAUUUACAAUGUUUAAAUAGACUCAUUAGUCAAUUCAUUGUUUAUUCGAUGGAUUGAUUGUUGUCCCAUCUCCCUUGCGUGGGAUAGAUGGUGUUUCUUCGGUACUGGGAUCUCUUUUUUUAUAGAUCCUAAACCAUAGUUAUGACGAUUGCUCUUUGAUUUUUUUUCAUUGAGUAACCCAAUGGAGCU,AY090606.1/1-300,1-300,0,299,AY090606.1/1-300 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43317,AY090607.1,1,sp|AY090607.1|AY090607 Saccharomyces unisporus RNase MRP snRNA (NME1) gene; partial sequence.,0,14,1,224,102.14,GACCUGAUCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUAUUUACAAUGUUUAAAUAGACUCAUUAAUCGAUUUUUUUGUGUAUUCAAUGGAUCGAUUGUUGUCCCAUCUCCCAUGUGUGGGAUAGGUGGUGUUUCUUCGGUAAUGGGAUUUUUUUUGAAUCCUAAACCAUAGUUAUGACGAUUGCUCUUUGAUUUAGUUCAUUGAGUAACCCAAUGGAGCU,AY090607.1/1-224,1-224,0,223,AY090607.1/1-224 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43318,AY090608.1,1,sp|AY090608.1|AY090608 Torulaspora delbrueckii RNase MRP snRNA (NME1) gene; partial sequence.,0,15,17,303,200.54,AUCGUCACUGUUCGAAGCUUGCAAAACUGGAGUGGUUCAUACACUCAAUCAAUGCUUUGGGUAGAAAGUCUCCGACCAGACCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUUUACAAUCUUUAAAUCAACUCAUUAAGUGGACUGGGGAUACUUGUAUUUUCAGCCCGCUUUCCAACCUGUAUACUCCUUUGAGUUGCAGUGCUUUUCGGUAUGGGAAUCUCGCUAGAUUUCAAACCAUAGUUAUGACGAUUGUUCAGUUUUUGCUGAAUAACCCAAUGGAGCU,AY090608.1/17-303,17-303,0,286,AY090608.1/17-303 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,43319,AY090609.1,1,sp|AY090609.1|AY090609 Zygosaccharomyces rouxii RNase MRP snRNA (NME1) gene; partial sequence.,0,16,1,272,152.46,AUCGUCAAUUUUCGAAGCCUGCAAAAGGGAUGGGUACCCCCAUUCAAAUAAUAUGCUUUGGGAUGAAAGUCUCCGACCUGACAACUUGCGGAAAACGCAAUGAGAUUUAAAAGUUUCAAAAUGUUUAAAUCAACUCAUUAAGUAGAUGGUUAUUCGAUUAUCUGCUUUGCCACCUAGAUCGUCACAGAUGGUCUAGUGCUUUUCGGUAUGGGAAACCAUUGUGGUUUCCAAACCAUAGUUAUGACGAUUGCUCAAGGAUUAUCCUUUGAGUA,AY090609.1/1-272,1-272,0,271,AY090609.1/1-272 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,68437,U16248.1,1,sp|U16248.1|SC16248 Saccharomyces cerevisiae C-type cyclin (UME3) gene; complete cds.,1,17,846,550,226.70,AUCGUCACAAAUCGAAGCUUACAAAAUGGAGUAAAAUUUUUUUUACUCAGUAAUAUGCUUUGGGUUGAAAGUCUCCCACCAAUUCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUUUAAAUUGUUUAAAUCAACUCAUUAAGGAGGAUGCCCUUGGGUAUUCUGCUUCUUGACCUGGUACCUCUAUUGCAGGGUACUGGUGUUUUCUUCGGUACUGGAUUCCGUUUGUAUGGAAUCUAAACCAUAGUUAUGACGAUUGCUCUUUCCCGUGCUGGAUCGAGUAACCCAAUGGAGCU,Z71301.1/2229-2525 Z71300.1/312-608 U16248.1/846-550 Z14231.1/289-585,846-550,0,296,U16248.1/846-550 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,70718,Z14231.1,1,sp|Z14231.1|SCNME1G S.cerevisiae NME1 gene encoding RNA component of RNase MRP.,0,18,289,585,226.70,AUCGUCACAAAUCGAAGCUUACAAAAUGGAGUAAAAUUUUUUUUACUCAGUAAUAUGCUUUGGGUUGAAAGUCUCCCACCAAUUCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUUUAAAUUGUUUAAAUCAACUCAUUAAGGAGGAUGCCCUUGGGUAUUCUGCUUCUUGACCUGGUACCUCUAUUGCAGGGUACUGGUGUUUUCUUCGGUACUGGAUUCCGUUUGUAUGGAAUCUAAACCAUAGUUAUGACGAUUGCUCUUUCCCGUGCUGGAUCGAGUAACCCAAUGGAGCU,Z71301.1/2229-2525 Z71300.1/312-608 U16248.1/846-550 Z14231.1/289-585,289-585,0,296,Z14231.1/289-585 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,74511,Z71300.1,1,sp|Z71300.1|SCYNL024C S.cerevisiae chromosome XIV reading frame ORF YNL024c,0,19,312,608,226.70,AUCGUCACAAAUCGAAGCUUACAAAAUGGAGUAAAAUUUUUUUUACUCAGUAAUAUGCUUUGGGUUGAAAGUCUCCCACCAAUUCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUUUAAAUUGUUUAAAUCAACUCAUUAAGGAGGAUGCCCUUGGGUAUUCUGCUUCUUGACCUGGUACCUCUAUUGCAGGGUACUGGUGUUUUCUUCGGUACUGGAUUCCGUUUGUAUGGAAUCUAAACCAUAGUUAUGACGAUUGCUCUUUCCCGUGCUGGAUCGAGUAACCCAAUGGAGCU,Z71301.1/2229-2525 Z71300.1/312-608 U16248.1/846-550 Z14231.1/289-585,312-608,0,296,Z71300.1/312-608 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,74512,Z71301.1,1,sp|Z71301.1|SCYNL025C S.cerevisiae chromosome XIV reading frame ORF YNL025c,0,20,2229,2525,226.70,AUCGUCACAAAUCGAAGCUUACAAAAUGGAGUAAAAUUUUUUUUACUCAGUAAUAUGCUUUGGGUUGAAAGUCUCCCACCAAUUCGUAUGCGGAAAACGUAAUGAGAUUUAAAAAUUUUAAAUUGUUUAAAUCAACUCAUUAAGGAGGAUGCCCUUGGGUAUUCUGCUUCUUGACCUGGUACCUCUAUUGCAGGGUACUGGUGUUUUCUUCGGUACUGGAUUCCGUUUGUAUGGAAUCUAAACCAUAGUUAUGACGAUUGCUCUUUCCCGUGCUGGAUCGAGUAACCCAAUGGAGCU,Z71301.1/2229-2525 Z71300.1/312-608 U16248.1/846-550 Z14231.1/289-585,2229-2525,0,296,Z71301.1/2229-2525 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,35603,Z18244.1,1,sp|Z18244.1|BTDISLPR Bos taurus displacement-loop region.,0,21,725,972,36.30,GCCUGUUUCCUAGGCUACAUACGGAGGACUAGUUCCUUGUUUGCGCCUAGGGGAAAGUCCCCGGACCGUGGGCAGAGAGUGCCACGUGCCCGUGCACGUAGACUUCCCCUGCUUCUCACGACUAAACCCGCCAAGAAGCGAUCCUACCCUGGGGGUGGGGAAGCCGAGCGGCGUGUUGCGGGGUGUCAUCCGUCAGCUUCUAAUAGUUACGCAGGCAGUGCCUCCAUGCGCACCAACCUCACGGGGCU,Z18244.1/725-972 L22578.1/716-963 Z25280.1/716-963,725-972,0,247,Z18244.1/725-972 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,36402,Z25280.1,1,sp|Z25280.1|BTMRPRNA B.taurus RNase MRP gene; complete CDS,0,22,716,963,36.30,GCCUGUUUCCUAGGCUACAUACGGAGGACUAGUUCCUUGUUUGCGCCUAGGGGAAAGUCCCCGGACCGUGGGCAGAGAGUGCCACGUGCCCGUGCACGUAGACUUCCCCUGCUUCUCACGACUAAACCCGCCAAGAAGCGAUCCUACCCUGGGGGUGGGGAAGCCGAGCGGCGUGUUGCGGGGUGUCAUCCGUCAGCUUCUAAUAGUUACGCAGGCAGUGCCUCCAUGCGCACCAACCUCACGGGGCU,Z18244.1/725-972 L22578.1/716-963 Z25280.1/716-963,716-963,0,247,Z25280.1/716-963 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,37465,L22578.1,1,sp|L22578.1|BTURNA Bos taurus small nuclear RNA gene.,0,23,716,963,36.30,GCCUGUUUCCUAGGCUACAUACGGAGGACUAGUUCCUUGUUUGCGCCUAGGGGAAAGUCCCCGGACCGUGGGCAGAGAGUGCCACGUGCCCGUGCACGUAGACUUCCCCUGCUUCUCACGACUAAACCCGCCAAGAAGCGAUCCUACCCUGGGGGUGGGGAAGCCGAGCGGCGUGUUGCGGGGUGUCAUCCGUCAGCUUCUAAUAGUUACGCAGGCAGUGCCUCCAUGCGCACCAACCUCACGGGGCU,Z18244.1/725-972 L22578.1/716-963 Z25280.1/716-963,716-963,0,247,L22578.1/716-963 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25779,AL732506.10,1,sp|AL732506.10|AL732506 Mouse DNA sequence from clone RP23-195K8 on chromosome 4,1,24,107206,106964,34.46,GCCUGUUUCCUAGGCUACAUACGAGGGACAUGUUCCUUAUCCUUUCGCCUAGGGGAAAGUCCCCGGACCACGGGCAGAGAGUGCCGCGUGCACACGCGCGUAGACUUCCCCCGCAAGUCACUGUUAGCCCGCCAAGAAGCGACCCCUCCGGGGCGAGCUGAGCGGCGUGCAGCGGGGCGUCAUCCGUCAGCUCACAUAGUGACGCAGGCAGUGCGACCUGGCUCGCACCAACCACACGGGGCU,J03151.1/859-1101 AL732506.10/107206-106964,107206-106964,0,242,AL732506.10/107206-106964 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,66769,J03151.1,1,sp|J03151.1|MMMRP Mouse mitochondrial RNA-processing endoribonuclease RNA gene.,0,25,859,1101,34.46,GCCUGUUUCCUAGGCUACAUACGAGGGACAUGUUCCUUAUCCUUUCGCCUAGGGGAAAGUCCCCGGACCACGGGCAGAGAGUGCCGCGUGCACACGCGCGUAGACUUCCCCCGCAAGUCACUGUUAGCCCGCCAAGAAGCGACCCCUCCGGGGCGAGCUGAGCGGCGUGCAGCGGGGCGUCAUCCGUCAGCUCACAUAGUGACGCAGGCAGUGCGACCUGGCUCGCACCAACCACACGGGGCU,J03151.1/859-1101 AL732506.10/107206-106964,859-1101,0,242,J03151.1/859-1101 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20242,J05014.1,1,sp|J05014.1|RNSR72R Rat gene for small nuclear 7-2 RNA.,0,26,15,258,32.06,GCCUGUUUCCUAGGCUACGUACGGGGGACCUUGUUCCUUAUCCUUUCGCCUAGGGGAAAGUCCCCGGACCAUGGGCAGAGAGUGCCGCGUGCACACGCGCGUAGGCUUCCCCCGCAAGUCACUGUUAGCCCGCCAAGAAGCGACCCCUCCGGGGCGAGCUGAGCGGCGUGCGGCGGGGUGUCAUCCGUCAGUUCUCCUAGUGACGCAGGCAGUGCGACCUUGUACGCACCAACCACACGGGGCU,J05014.1/15-258,15-258,0,243,J05014.1/15-258 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,51567,D30745.1,1,sp|D30745.1|XLMRPRNA Xenopus laevis MRP RNA gene.,0,27,2851,3096,21.55,ACCUGAAGUCUAGGCAACGUACGGGAGACGUAGUUCUUCAAUCACAUGACGCCUAGGGGAAAGUCCCCGGAUCUCGGGUAGAAAGUGCCGUGCGCUACUAUGGCGUGCAAUAAUCCCGCCCUGCUGUCCAUAUCAACCCGCCAAGAAGCUCCCAGAGCCGAGCGGCUUGGAUUAGGGCGGGAUCUCUCAUCAGUCACCAUAGUAACUCAGGUAGCGCGGCAACGUCCACGCUAACUAAACGGGGCU,D30745.1/2851-3096,2851-3096,0,245,D30745.1/2851-3096 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,51853,Z11844.1,1,sp|Z11844.1|XLRNMRP X.laevis DNA for RNase MRP RNA component.,0,28,506,751,22.24,ACCUGAAGUCUAGGCAACGUACGGGAGACGUAGUUCUUCAAUCACAUGACGCCUAGGGGAAAGUCCCCGGAUCUCGGGUAGAAAGUGCCGUGCGCUACUAUGGCGUGCAAUAAUCCCGCCCUGCUGUCCAUAUCAACCCGCUAAGAAGCUCCCAGAGCCGAGCGGCUUGGAUUAGGGCGGGAUCUCUCAUCAGUCACCAUAGUAACUCAGGUAGCGCGGCAACGUCCACGCUAACUAAACGGGGCU,Z11844.1/506-751,506-751,0,245,Z11844.1/506-751 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz,7886,AF334829.1,1,sp|AF334829.1|AF334829 Homo sapiens mitochondrial RNA-processing endoribonuclease RNA (RMRP) gene; complete sequence.,0,29,134546,134781,50.14,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCUCCUUUCCGCCUAGGGGAAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCU,AF334829.1/134546-134781,134546-134781,0,235,AF334829.1/134546-134781 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz,2544,AF458223.1,1,sp|AF458223.1|AF458223 Homo sapiens RNase MRP RNA component; complete sequence.,0,30,14,249,45.46,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGGAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCU,AF458226.1/560-795 AF458223.1/14-249 AF458225.1/560-795 AF458227.1/560-795,14-249,0,235,AF458223.1/14-249 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz,2545,AF458224.1,1,sp|AF458224.1|AF458224 Homo sapiens cell line Coriell GM05893 RNase MRP RNA component gene; complete sequence.,0,31,560,795,49.97,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGAAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCU,AF458224.1/560-795 X51867.1/729-964 AL357874.13/66113-65878 M29916.1/758-993,560-795,0,235,AF458224.1/560-795 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz,2546,AF458225.1,1,sp|AF458225.1|AF458225 Homo sapiens cell line Coriell GM03626A RNase MRP RNA component gene; complete sequence.,0,32,560,795,45.46,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGGAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCU,AF458226.1/560-795 AF458223.1/14-249 AF458225.1/560-795 AF458227.1/560-795,560-795,0,235,AF458225.1/560-795 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz,2547,AF458226.1,1,sp|AF458226.1|AF458226 Homo sapiens cell line Coriell GM03625C RNase MRP RNA component gene; complete sequence.,0,33,560,795,45.46,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGGAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCU,AF458226.1/560-795 AF458223.1/14-249 AF458225.1/560-795 AF458227.1/560-795,560-795,0,235,AF458226.1/560-795 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz,2548,AF458227.1,1,sp|AF458227.1|AF458227 Homo sapiens cell line Coriell GM01671 RNase MRP RNA component gene; complete sequence.,0,34,560,795,45.46,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGGAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCU,AF458226.1/560-795 AF458223.1/14-249 AF458225.1/560-795 AF458227.1/560-795,560-795,0,235,AF458227.1/560-795 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,2358,AL357874.13,1,sp|AL357874.13|AL357874 Human DNA sequence from clone RP11-331F9 on chromosome 9,1,35,66113,65878,49.97,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGAAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCU,AF458224.1/560-795 X51867.1/729-964 AL357874.13/66113-65878 M29916.1/758-993,66113-65878,0,235,AL357874.13/66113-65878 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz,4817,M29916.1,1,sp|M29916.1|HSMRP Human mitochondrial RNA-processing endoribonuclease RNA (mrp) gene; complete cds.,0,36,758,993,49.97,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGAAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCU,AF458224.1/560-795 X51867.1/729-964 AL357874.13/66113-65878 M29916.1/758-993,758-993,0,235,M29916.1/758-993 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz,4824,X51867.1,1,sp|X51867.1|HSMRPRNA H.sapiens MRP RNA gene encoding the RNA component of RNase MRP,0,37,729,964,49.97,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGAAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCU,AF458224.1/560-795 X51867.1/729-964 AL357874.13/66113-65878 M29916.1/758-993,729-964,0,235,X51867.1/729-964 ./cmzasha --no-stderr --filter 380 20 Rfam/cm/RF00030.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00030_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00030_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00030.cm (global),/projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz,1566,M29212.1,1,sp|M29212.1|HSRRTH Human Th RNA; complete cds.,0,38,14,249,47.05,GCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGAAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGAUUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCUACCACACGGGGCU,M29212.1/14-249,14-249,0,235,M29212.1/14-249 THINGS IN Rfam THAT WEREN'T FOUND: # hits found that weren't in Rfam: 0 (totally new = 0, overlaps hit in Rfam = 0, overlap hits with more than 10 nucs = 0, total # hits with 0 overlap with Rfam (ignoring sequence matching) = 0) # Rfam hits not found: 0 (no overlap of >= 10 nucs: 0) # Rfam seqs not found: 0 (no overlap of >= 10 nucs: too tricky to calculate)