Params: ./cmzasha --no-stderr --filter 150 13 Rfam/cm/RF00027.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00027_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin hmm data/TryAllCm/RF00027_fwdinf_hmmtype1_advance_copy.bin Build: release Host: recycle.cs.washington.edu pid: 8628 ----cmFile: Rfam/cm/RF00027.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5206,sp|AC006590.11|AC006590 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone BACR13N02, complete sequence. ----isReversed: 0 ----hitSequence: GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAAUUACACAUCAUACUAUACAAUGUGCUAGCUUUCUUUG hit 0 : 37991 38059 (fwd) 13.99 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 :::::UGAG+:AG+A :UUGUAUAGU :GU+AU+ AC: AU ACUAUAC 37991 GCAAAUUGAGGUAGUAGGUUGUAUAGU----AGUAAUUACACA-----UCAU-ACUAUAC 38040 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AA: U+CU:+CUU::::: 38041 AAUGUGCUAGCUUUCUUUG 38059 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5562,sp|AC008184.4|AC008184 Drosophila melanogaster, chromosome 2L, region 36E5-36F2, BAC clone BACR04D05, complete sequence. ----isReversed: 0 ----hitSequence: GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAAUUACACAUCAUACUAUACAAUGUGCUAGCUUUCUUUG hit 1 : 115512 115580 (fwd) 13.99 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 :::::UGAG+:AG+A :UUGUAUAGU :GU+AU+ AC: AU ACUAUAC 115512 GCAAAUUGAGGUAGUAGGUUGUAUAGU----AGUAAUUACACA-----UCAU-ACUAUAC 115561 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AA: U+CU:+CUU::::: 115562 AAUGUGCUAGCUUUCUUUG 115580 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6356,sp|AC084471.1|AC084471 Caenorhabditis briggsae cosmid CB048J20, complete sequence. ----isReversed: 1 ----hitSequence: UACGGUGAGGUAGUAGGUUGUAUAGUUUAGAAUAUUACUCUCGGUGAACUAUGCAAGUUUCUACCUCACCGAA hit 2 : 10992 10920 (rev) 39.29 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 :::GGU +AGG:AG:A:+UUG:AUAGUUUAG::U AUUA::C+ GG G AACUAU:C 84548 UACGGU-GAGGUAGUAGGUUGUAUAGUUUAGAAU---AUUACUCUCGGUG--AACUAUGC 84601 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AA+:U:CU:CCU+ACC::: 84602 AAGUUUCUACCUCACCGAA 84620 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7675,sp|AE003659.2|AE003659 Drosophila melanogaster chromosome 2L section 68 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAAUUACACAUCAUACUAUACAAUGUGCUAGCUUUCUUUG hit 3 : 54903 54971 (fwd) 13.99 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 :::::UGAG+:AG+A :UUGUAUAGU :GU+AU+ AC: AU ACUAUAC 54903 GCAAAUUGAGGUAGUAGGUUGUAUAGU----AGUAAUUACACA-----UCAU-ACUAUAC 54952 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AA: U+CU:+CUU::::: 54953 AAUGUGCUAGCUUUCUUUG 54971 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #25803,sp|AF210771.1|AF210771 Caenorhabditis briggsae let-7 RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: UACGGUGAGGUAGUAGGUUGUAUAGUUUAGAAUAUUACUCUCGGUGAACUAUGCAAGUUUCUACCUCACCGAA hit 4 : 1883 1955 (fwd) 39.29 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 :::GGU +AGG:AG:A:+UUG:AUAGUUUAG::U AUUA::C+ GG G AACUAU:C 1883 UACGGU-GAGGUAGUAGGUUGUAUAGUUUAGAAU---AUUACUCUCGGUG--AACUAUGC 1936 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AA+:U:CU:CCU+ACC::: 1937 AAGUUUCUACCUCACCGAA 1955 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #32203,sp|AF274345.1|AF274345 Caenorhabditis elegans let-7 RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: UCCGGUGAGGUAGUAGGUUGUAUAGUUUGGAAUAUUACCACCGGUGAACUAUGCAAUUUUCUACCUUACCGGA hit 5 : 1758 1830 (fwd) 41.80 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 :C:GGU GAGG:AG:A::UUG:AUAGUU :GG AUAUU CC:C GG G AACUAU:C 1758 UCCGGU-GAGGUAGUAGGUUGUAUAGUU--UGGA-AUAUUACCACCGGUG--AACUAUGC 1811 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AA::U:CU:CCUUACC:G: 1812 AAUUUUCUACCUUACCGGA 1830 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43206,sp|Z70203.2|CEC05G5 Caenorhabditis elegans cosmid C05G5 ----isReversed: 1 ----hitSequence: UCCGGUGAGGUAGUAGGUUGUAUAGUUUGGAAUAUUACCACCGGUGAACUAUGCAAUUUUCUACCUUACCGGA hit 6 : 12451 12379 (rev) 41.80 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 :C:GGU GAGG:AG:A::UUG:AUAGUU :GG AUAUU CC:C GG G AACUAU:C 24838 UCCGGU-GAGGUAGUAGGUUGUAUAGUU--UGGA-AUAUUACCACCGGUG--AACUAUGC 24891 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AA::U:CU:CCUUACC:G: 24892 AAUUUUCUACCUUACCGGA 24910 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6187,sp|AC122451.3|AC122451 Mus musculus clone RP24-252G15, complete sequence. ----isReversed: 1 ----hitSequence: CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUG hit 7 : 48611 48536 (rev) 52.34 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 C:GGG:UGAG+:AG:AGGUUGUA::GUUUAG:GU + AC:C++GGAG UAAC::UAC 111646 CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGU---UACACCCUGGGAGUUAACUGUAC 111702 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AACCU:CU:+CUU:CCU:G 111703 AACCUUCUAGCUUUCCUUG 111721 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25251,sp|AL672180.11|AL672180 Mouse DNA sequence from clone RP23-419G22 on chromosome X ----isReversed: 0 ----hitSequence: GUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC hit 8 : 2218 2298 (fwd) 49.79 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<______>>>>....-------->>> 1 ccggguUgagguaguagguuguauaguuU.Agggugauauuaccc....caGGAGAUaac 55 ::GG:UGAG+UAGUAG::UGUAUAGUUU AGGGU UACCC + GGAGAUAAC 2218 GUGGGAUGAGGUAGUAGAUUGUAUAGUUUuAGGGU---CAUACCCcaucUUGGAGAUAAC 2274 >>>>>>>>>>>>>>>>>>>>>>>> 56 uauacaaccuacugccuuaccugg 79 UAUACA::CUACUG+CUU:CC:: 2275 UAUACAGUCUACUGUCUUUCCCAC 2298 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25251,sp|AL672180.11|AL672180 Mouse DNA sequence from clone RP23-419G22 on chromosome X ----isReversed: 0 ----hitSequence: CUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUUUUAGGCCCCAGUAAGAAGAUAACUAUACAACUUACUACUUUCCUUGG hit 9 : 3094 3182 (fwd) 37.33 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<...______..>>>>....------ 1 ccggguUgagguaguagguuguauaguuU.Agggu...gauauu..accc....caGGAG 50 C:G:G:UGA G:AGUA:GUUGUAU+GUU GGG: GAU+UU :CCC +AG AG 3094 CUGGGGUGAGGUAGUAAGUUGUAUUGUUGuGGGGUaggGAUUUUagGCCCcaguAAGAAG 3153 -->>>>>>>>>>>>>>>>>>>>>>>>>>> 51 AUaacuauacaaccuacugccuuaccugg 79 AUAAC+AUACAAC:UACU:C UU:C:U:G 3154 AUAACUAUACAACUUACUACUUUCCUUGG 3182 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24470,sp|AL935208.8|AL935208 Zebrafish DNA sequence from clone CH211-241N17 ----isReversed: 0 ----hitSequence: CUGGGUUGAGGUAGUUGUUUGUACAGUUUUUAGGGUCUGUUAUUCUGCCCUGUUAAGGAGCUAACUGUACAGACUACUGCCUUGCCCAG hit 10 : 111380 111468 (fwd) 40.35 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-..-<<<<....______>>>>....------ 1 ccggguUgagguaguagguuguauaguuU..Agggu....gauauuaccc....caGGAG 50 C::GG UGAGGUAGU G :UGUA:AGUUU AGGG: AU++U:CCC +AGGAG 111380 CUGGGUUGAGGUAGUUGUUUGUACAGUUUuuAGGGUcuguUAUUCUGCCCuguuAAGGAG 111439 -->>>>>>>>>>>>>>>>>>>>>>>>>>> 51 AUaacuauacaaccuacugccuuaccugg 79 UAACU:UACA: C ACUGCCUU CC::G 111440 CUAACUGUACAGACUACUGCCUUGCCCAG 111468 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #36468,sp|BX005256.11|BX005256 Zebrafish DNA sequence from clone DKEY-79D12 ----isReversed: 1 ----hitSequence: GCGGUGUGAGGUAGUUGGUUGUAUGGUUUUGCAUAAUAAACAGCCCGGAGUUAACUGUACAACCUUCUAGCUUUCCCUG hit 11 : 482 404 (rev) 32.90 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 ::G::UGAG+:AG: GGUUGUA::GUUU G : +AUA + : CC GGAG UAAC::UAC 198987 GCGGUGUGAGGUAGUUGGUUGUAUGGUUUUGCAUAAUAAACAGCCCGGAGUUAACUGUAC 199046 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AACC :CU:+CUU::C:: 199047 AACCUUCUAGCUUUCCCUG 199065 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9510,sp|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence. ----isReversed: 1 ----hitSequence: AGAAGUACAGGUAGUAGGUUGCGUAGUUUGAGGACAGGGAUUUUAUCCACAAGGAGGUAAUUAUAUGACCUGCUGCUACCUUUC hit 12 : 31661 31578 (rev) 19.10 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<...______>>>>..-------->> 1 ccggguUgagguaguagguuguauaguuU.Agggu...gauauuaccc..caGGAGAUaa 54 ::G :AGGUAG+AGGU: ::UA UUU AGG: GAU+UU :CC +AGGAG UAA 76155 AGAAGUACAGGUAGUAGGUUGCGUAGUUUgAGGACaggGAUUUUAUCCacAAGGAGGUAA 76214 >>>>>>>>>>>>>>>>>>>>>>>>> 55 cuauacaaccuacugccuuaccugg 79 UA:: :ACCU+CUG CU: C:: 76215 UUAUAUGACCUGCUG-CUACCUUUC 76238 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3596,sp|AC011193.3|AC011193 Homo sapiens chromosome 17, clone RP11-521P1, complete sequence. ----isReversed: 0 ----hitSequence: AGAAGUACAGGUAGUAGGUUGCGUAGUUUGAGGACAGGGAUUUUAUCCACAAGGAGGUAAUUAUAUGACCUGCUGCUACCUUUC hit 13 : 111150 111233 (fwd) 19.10 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<...______>>>>..-------->> 1 ccggguUgagguaguagguuguauaguuU.Agggu...gauauuaccc..caGGAGAUaa 54 ::G :AGGUAG+AGGU: ::UA UUU AGG: GAU+UU :CC +AGGAG UAA 111150 AGAAGUACAGGUAGUAGGUUGCGUAGUUUgAGGACaggGAUUUUAUCCacAAGGAGGUAA 111209 >>>>>>>>>>>>>>>>>>>>>>>>> 55 cuauacaaccuacugccuuaccugg 79 UA:: :ACCU+CUG CU: C:: 111210 UUAUAUGACCUGCUG-CUACCUUUC 111233 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5062,sp|AC018755.3|AC018755 Homo sapiens chromosome 19, BAC BC330783 (CIT-HSPC_470E3), complete sequence. ----isReversed: 0 ----hitSequence: CCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAGGACACCCAAGGAGAUCACUAUACGGCCUCCUAGCUUUCCCCA hit 14 : 119936 120011 (fwd) 42.88 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 :+:GG:UGAG+:AG:AGG::GUAUAGU+ AGG: :CC+AGGAGAU+ACUAUAC 119936 CCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAG---GACACCCAAGGAGAUCACUAUAC 119992 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 ::CCU:CU:+CUU:CC:+: 119993 GGCCUCCUAGCUUUCCCCA 120011 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7302,sp|AC048341.22|AC048341 Homo sapiens 12 BAC RP11-631N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: CCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGU hit 15 : 3536 3622 (fwd) 41.14 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-..-<<<<...______>>>>...-------- 1 ccggguUgagguaguagguuguauaguuU..Agggu...gauauuaccc...caGGAGAU 52 :C::G:UGAGGUAGUAG:UUG:::+GUU GGG: GA AUU:CCC GGAGAU 3536 CCUGGCUGAGGUAGUAGUUUGUGCUGUUGguCGGGUuguGACAUUGCCCgcuGUGGAGAU 3595 >>>>>>>>>>>>>>>>>>>>>>>>>>> 53 aacuauacaaccuacugccuuaccugg 79 AAC+:::CAA:CUACUGCCUU:C::G: 3596 AACUGCGCAAGCUACUGCCUUGCUAGU 3622 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #404,sp|AC092045.2|AC092045 Homo sapiens chromosome 3 clone RP11-168J18, complete sequence. ----isReversed: 0 ----hitSequence: CCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCAGG hit 16 : 144495 144582 (fwd) 54.83 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<....______>>>>....------- 1 ccggguUgagguaguagguuguauaguuU.Agggu....gauauuaccc....caGGAGA 51 CC:GG:UGAGGUAGU+G::UGUA:AGUUU AGGGU GAUA+ ACCC CAGGAGA 144495 CCAGGCUGAGGUAGUAGUUUGUACAGUUUgAGGGUcuauGAUACCACCCgguaCAGGAGA 144554 ->>>>>>>>>>>>>>>>>>>>>>>>>>> 52 Uaacuauacaaccuacugccuuaccugg 79 UAACU:UACA::C+ACUGCCUU:CC:GG 144555 UAACUGUACAGGCCACUGCCUUGCCAGG 144582 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1623,sp|AC094021.2|AC094021 Homo sapiens chromosome 3 clone RP11-801L18, complete sequence. ----isReversed: 1 ----hitSequence: CCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCAGG hit 17 : 47340 47253 (rev) 54.83 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<....______>>>>....------- 1 ccggguUgagguaguagguuguauaguuU.Agggu....gauauuaccc....caGGAGA 51 CC:GG:UGAGGUAGU+G::UGUA:AGUUU AGGGU GAUA+ ACCC CAGGAGA 166821 CCAGGCUGAGGUAGUAGUUUGUACAGUUUgAGGGUcuauGAUACCACCCgguaCAGGAGA 166880 ->>>>>>>>>>>>>>>>>>>>>>>>>>> 52 Uaacuauacaaccuacugccuuaccugg 79 UAACU:UACA::C+ACUGCCUU:CC:GG 166881 UAACUGUACAGGCCACUGCCUUGCCAGG 166908 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----sequence: #3734,sp|AF480570.1|AF480570 Homo sapiens miR-98-precursor-X micro RNA, complete sequence. ----isReversed: 0 ----hitSequence: GUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUC hit 18 : 1 79 (fwd) 17.61 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<...______..>>>>....------ 1 ccggguUgagguaguagguuguauaguuU.Agggu...gauauu..accc....caGGAG 50 :UGA G:AGUA:GUUGUAU+GUU GGG: GAUAUU :CCC +AG AG 1 -----GUGAGGUAGUAAGUUGUAUUGUUGuGGGGUaggGAUAUUagGCCCcaauUAGAAG 55 -->>>>>>>>>>>>>>>>>>>>>>>>>>> 51 AUaacuauacaaccuacugccuuaccugg 79 AUAAC+AUACAAC:UACU:C UU: 56 AUAACUAUACAACUUACUACUUUC----- 79 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #702,sp|AL158152.18|AL158152 Human DNA sequence from clone RP11-2B6 on chromosome 9q22.2-31.1 ----isReversed: 0 ----hitSequence: GUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAA hit 19 : 37900 37981 (fwd) 52.65 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<______>>>>.....-------->> 1 ccggguUgagguaguagguuguauaguuU.Agggugauauuaccc.....caGGAGAUaa 54 :GGG:UGAG+UAGUAG:UUGUAUAGUUU AGGGU ACCC ++GGAGAUAA 37900 GUGGGAUGAGGUAGUAGGUUGUAUAGUUUuAGGGU---CACACCCaccacUGGGAGAUAA 37956 >>>>>>>>>>>>>>>>>>>>>>>>> 55 cuauacaaccuacugccuuaccugg 79 CUAUACAA:CUACUG+CUU:CCU: 37957 CUAUACAAUCUACUGUCUUUCCUAA 37981 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #702,sp|AL158152.18|AL158152 Human DNA sequence from clone RP11-2B6 on chromosome 9q22.2-31.1 ----isReversed: 0 ----hitSequence: UCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUCAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGA hit 20 : 38291 38377 (fwd) 53.59 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<...______>>>>....-------- 1 ccggguUgagguaguagguuguauaguuU.Agggu...gauauuaccc....caGGAGAU 52 :C:G::UGAGGUA+UAG:UUGUAUAGUU GGGU GAU+UUACCC CAGGAGAU 38291 UCAGAGUGAGGUAGUAGAUUGUAUAGUUGuGGGGUaguGAUUUUACCCuguuCAGGAGAU 38350 >>>>>>>>>>>>>>>>>>>>>>>>>>> 53 aacuauacaaccuacugccuuaccugg 79 AACUAUACAA:CUA+UGCCUU::C:G: 38351 AACUAUACAAUCUAUUGCCUUCCCUGA 38377 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #702,sp|AL158152.18|AL158152 Human DNA sequence from clone RP11-2B6 on chromosome 9q22.2-31.1 ----isReversed: 0 ----hitSequence: CUAGGAAGAGGUAGUAGGUUGCAUAGUUUUAGGGCAGGGAUUUUGCCCACAAGGAGGUAACUAUACGACCUGCUGCCUUUCUUAG hit 21 : 40779 40863 (fwd) 52.21 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<...______>>>>..-------->> 1 ccggguUgagguaguagguuguauaguuU.Agggu...gauauuaccc..caGGAGAUaa 54 C:::G: GAGGUAG+AGGU:G:AUAGUUU AGGG: GAU+UU:CCC +AGGAG UAA 40779 CUAGGAAGAGGUAGUAGGUUGCAUAGUUUuAGGGCaggGAUUUUGCCCacAAGGAGGUAA 40838 >>>>>>>>>>>>>>>>>>>>>>>>> 55 cuauacaaccuacugccuuaccugg 79 CUAU:C:ACCU+CUGCCUU:C:::G 40839 CUAUACGACCUGCUGCCUUUCUUAG 40863 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1186,sp|AL162595.17|AL162595 Human DNA sequence from clone RP5-1061H20 on chromosome 1 ----isReversed: 1 ----hitSequence: CUAGGAAGAGGCAACAGGUUGCAUAGUUUGAGGGCAGGCAUUUUUCCCACUUAGGGGUAACCGUAUGCUCUGCUGCCUGUCUUAG hit 22 : 20369 20285 (rev) 17.57 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<...______>>>>...--------> 1 ccggguUgagguaguagguuguauaguuU.Agggu...gauauuaccc...caGGAGAUa 53 C:::G: AGG:A::AG: : :A: GUUU AGGG AU+UU CCC +AGG G UA 94650 CUAGGAAGAGGCAACAGGUUGCAUAGUUUgAGGGCaggCAUUUUUCCCacuUAGGGG-UA 94708 >>>>>>>>>>>>>>>>>>>>>>>>>> 54 acuauacaaccuacugccuuaccugg 79 AC :U: : :CU::U:CCU :C:::G 94709 ACCGUAUGCUCUGCUGCCUGUCUUAG 94734 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4909,sp|AL592046.7|AL592046 Human DNA sequence from clone RP11-155O24 on chromosome X ----isReversed: 1 ----hitSequence: GUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC hit 23 : 22669 22589 (rev) 49.79 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<______>>>>....-------->>> 1 ccggguUgagguaguagguuguauaguuU.Agggugauauuaccc....caGGAGAUaac 55 ::GG:UGAG+UAGUAG::UGUAUAGUUU AGGGU UACCC + GGAGAUAAC 63528 GUGGGAUGAGGUAGUAGAUUGUAUAGUUUuAGGGU---CAUACCCcaucUUGGAGAUAAC 63584 >>>>>>>>>>>>>>>>>>>>>>>> 56 uauacaaccuacugccuuaccugg 79 UAUACA::CUACUG+CUU:CC:: 63585 UAUACAGUCUACUGUCUUUCCCAC 63608 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4909,sp|AL592046.7|AL592046 Human DNA sequence from clone RP11-155O24 on chromosome X ----isReversed: 1 ----hitSequence: CCAGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG hit 24 : 21722 21634 (rev) 40.89 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<...______..>>>>....------ 1 ccggguUgagguaguagguuguauaguuU.Agggu...gauauu..accc....caGGAG 50 CC:GG:UGA G:AGUA:GUUGUAU+GUU GGG: GAUAUU :CCC +AG AG 64475 CCAGGGUGAGGUAGUAAGUUGUAUUGUUGuGGGGUaggGAUAUUagGCCCcaauUAGAAG 64534 -->>>>>>>>>>>>>>>>>>>>>>>>>>> 51 AUaacuauacaaccuacugccuuaccugg 79 AUAAC+AUACAAC:UACU:C UU:CC:GG 64535 AUAACUAUACAACUUACUACUUUCCCUGG 64563 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6765,sp|AP000962.2|AP000962 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B821P16, LL56-APP region. ----isReversed: 0 ----hitSequence: CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUG hit 25 : 118093 118168 (fwd) 52.34 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 C:GGG:UGAG+:AG:AGGUUGUA::GUUUAG:GU + AC:C++GGAG UAAC::UAC 118093 CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGU---UACACCCUGGGAGUUAACUGUAC 118149 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AACCU:CU:+CUU:CCU:G 118150 AACCUUCUAGCUUUCCUUG 118168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6963,sp|AP001359.4|AP001359 Homo sapiens genomic DNA, chromosome 11q clone:RP11-820L6, complete sequences. ----isReversed: 1 ----hitSequence: CCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG hit 26 : 114553 114478 (rev) 47.81 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 C::GG:UGAG+:AG+AGG:UGUA:AGUUUA ::U + A:: ++GGAGAUAACU:UAC 106983 CCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAU---UACAUCAAGGGAGAUAACUGUAC 107039 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 A:CCU+CU:+CUU:CC::G 107040 AGCCUCCUAGCUUUCCUUG 107058 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7108,sp|AP001667.1|AP001667 Homo sapiens genomic DNA, chromosome 21q, section 11/105. ----isReversed: 0 ----hitSequence: CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUG hit 27 : 186549 186624 (fwd) 52.34 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>-------->>>>>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccccaGGAGAUaacuauac 60 C:GGG:UGAG+:AG:AGGUUGUA::GUUUAG:GU + AC:C++GGAG UAAC::UAC 186549 CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGU---UACACCCUGGGAGUUAACUGUAC 186605 >>>>>>>>>>>>>>>>>>> 61 aaccuacugccuuaccugg 79 AACCU:CU:+CUU:CCU:G 186606 AACCUUCUAGCUUUCCUUG 186624 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #2685,sp|AL049853.1|HS695O20B Human DNA sequence from clone RP4-695O20 on chromosome 22q13.1-13.33 ----isReversed: 1 ----hitSequence: UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCUCUGCCCUGCUAUGGGAUAACUAUACAAUCUACUGUCUUUCCUGA hit 28 : 18009 17931 (rev) 50.91 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<--<<<<______>>>>...-------->>>>> 1 ccggguUgagguaguagguuguauaguuUAgggugauauuaccc...caGGAGAUaacua 57 ::GGG:UGAG+UAGUAG:UUGUAUAGUUU GGG: ++U:CCC +A G GAUAACUA 20777 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGC---UCUGCCCugcUAUGGGAUAACUA 20833 >>>>>>>>>>>>>>>>>>>>>> 58 uacaaccuacugccuuaccugg 79 UACAA:CUACUG+CUU:CCU:: 20834 UACAAUCUACUGUCUUUCCUGA 20855 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #2685,sp|AL049853.1|HS695O20B Human DNA sequence from clone RP4-695O20 on chromosome 22q13.1-13.33 ----isReversed: 1 ----hitSequence: GCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCUGA hit 29 : 17070 16986 (rev) 53.97 bits <<<<<<-<<<<<<<<<<<<<<<<<<<<<-.-<<<<...______>>>>..-------->> 1 ccggguUgagguaguagguuguauaguuU.Agggu...gauauuaccc..caGGAGAUaa 54 CGGG:UGAGGUAGUAGGUUGU:U:GUUU AGGG: GAU UU:CCC C+G AGAUAA 21716 GCGGGGUGAGGUAGUAGGUUGUGUGGUUUcAGGGCaguGAUGUUGCCCcuCGGAAGAUAA 21775 >>>>>>>>>>>>>>>>>>>>>>>>> 55 cuauacaaccuacugccuuaccugg 79 C:A:ACAACCUACUGCCUU:CCUG 21776 CUAUACAACCUACUGCCUUCCCUGA 21800 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=0.00153209, 2d-fracLetsThru=0.000784951). Filter report: done 1.65905e+10 nucs (frac lets thru so far=0.0150737, 2d-fracLetsThru=0.00782262). Filter report: done 2.50081e+08 nucs (frac lets thru so far=0.10164, 2d-fracLetsThru=0.100344). done 1.65905e+10 nucs (frac lets thru so far=0.00153209, 2d-fracLetsThru=0.000784951). CPU time: 315418.61u 1108.97s 87:55:27.57 Elapsed: 91:24:25