params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,9201,AF053588.1,1,sp|AF053588.1|AF053588 Nosema locustae U6 snRNA gene; complete sequence.,0,0,116,223,89.66,UGCAGUUUGCUGCGCUAUUAGUUUGGAACAACACUGAGAAGAUUAGCAUGGCCCCUGCGCAAGGACGGCAUCUUUCUUUGAGAGGUGUGCUGGGCUCGCCCAGCUUUU,AF053588.1/116-223,116-223,0,107,AF053588.1/116-223
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,44263,AY136823.1,1,sp|AY136823.1|AY136823 Aspergillus niger U6 small nuclear RNA gene; complete sequence.,0,1,412,532,92.73,GUCCGUUGUAACAGCCUUUGGACAUAUGCUCGACAUUGCUAAAUUGGAACGAUACAGAGACGAUAGCAUGUCCCCUGCGCAAGGAUGACGUUACAAAUCGAGAUAUUCGUUUUAGGCUUUU,AY136823.1/412-532,412-532,0,120,AY136823.1/412-532
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58706,AL590448.1,1,sp|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora),1,2,66611,66503,79.41,UAGUUUUCUACCGCCAUUGAUUUGGAACAACACAGAGAAGAUUAGCAUGGCCCCUGCGUAAGGACGACAUGUAUAACUUGAGAGGUCGCUGGAUGUAGAUCCGGCUUUU,AL590448.1/66611-66503,66611-66503,0,108,AL590448.1/66611-66503
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64936,AL389901.1,1,sp|AL389901.1|NCB7F21 Neurospora crassa DNA linkage group II BAC clone B7F21,1,3,34740,34637,103.76,CGCCCUUCGGGGCAAUUUGGUCAAUUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACUAAGGAUGACACGCUACUCAAAGAGACGCUACCAAAUUUUU,AL389901.1/34740-34637,34740-34637,0,103,AL389901.1/34740-34637
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,69362,X89514.1,1,sp|X89514.1|SCCHXIILA S.cerevisiae DNA from chromosome XII right arm,0,4,2843,2955,91.12,GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU,X12565.1/540-652 Z73279.1/2843-2955 Z73280.1/1298-1410 X89514.1/2843-2955 U53878.1/1298-1410,2843-2955,0,112,X89514.1/2843-2955
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,70401,U53878.1,1,sp|U53878.1|SCL9354 Saccharomyces cerevisiae chromosome XII cosmid 9354.,0,5,1298,1410,91.12,GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU,X12565.1/540-652 Z73279.1/2843-2955 Z73280.1/1298-1410 X89514.1/2843-2955 U53878.1/1298-1410,1298-1410,0,112,U53878.1/1298-1410
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,71645,X12565.1,1,sp|X12565.1|SCSNR6 Yeast SNR6 gene for U6 small nuclear RNA,0,6,540,652,91.12,GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU,X12565.1/540-652 Z73279.1/2843-2955 Z73280.1/1298-1410 X89514.1/2843-2955 U53878.1/1298-1410,540-652,0,112,X12565.1/540-652
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,74436,Z73279.1,1,sp|Z73279.1|SCYLR107W S.cerevisiae chromosome XII reading frame ORF YLR107w,0,7,2843,2955,91.12,GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU,X12565.1/540-652 Z73279.1/2843-2955 Z73280.1/1298-1410 X89514.1/2843-2955 U53878.1/1298-1410,2843-2955,0,112,Z73279.1/2843-2955
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,74437,Z73280.1,1,sp|Z73280.1|SCYLR108C S.cerevisiae chromosome XII reading frame ORF YLR108c,0,8,1298,1410,91.12,GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU,X12565.1/540-652 Z73279.1/2843-2955 Z73280.1/1298-1410 X89514.1/2843-2955 U53878.1/1298-1410,1298-1410,0,112,Z73280.1/1298-1410
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,76465,Z98762.1,1,sp|Z98762.1|SPAC4A8 S.pombe chromosome I cosmid c4A8.,1,9,24176,24025,89.72,UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCGAGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAAACCCAUUUUUU,Z98762.1/24176-24025 X14196.1/133-284,24176-24025,0,151,Z98762.1/24176-24025
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77616,X14196.1,1,sp|X14196.1|SPSNRNA Yeast U6 small nuclear RNA gene,0,10,133,284,89.72,UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCGAGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAAACCCAUUUUUU,Z98762.1/24176-24025 X14196.1/133-284,133-284,0,151,X14196.1/133-284
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77788,M55650.1,1,sp|M55650.1|SPUGU6Q1 S.pombe U6 snRNA gene; partial exons 1 and 2.,0,11,1,149,81.64,GAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCGAGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAAACCCAUUUU,M55650.1/1-149,1-149,0,148,M55650.1/1-149
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5608,AC008237.4,1,sp|AC008237.4|AC008237 Drosophila melanogaster; chromosome 3R; region 96A-96A; BAC clone BACR47D16; complete sequence.,0,12,88424,88530,134.17,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,M24605.1/96-202 AC008237.4/88424-88530 M24606.1/401-507 AE003748.3/99723-99829 AC008237.4/89028-89134 AC008237.4/89551-89657 AE003748.3/100246-100352 AE003748.3/99119-99225 M24607.1/301-407,88424-88530 89028-89134 89551-89657,0,106,AC008237.4/88424-88530
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5608,AC008237.4,1,sp|AC008237.4|AC008237 Drosophila melanogaster; chromosome 3R; region 96A-96A; BAC clone BACR47D16; complete sequence.,0,13,89028,89134,134.17,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,M24605.1/96-202 AC008237.4/88424-88530 M24606.1/401-507 AE003748.3/99723-99829 AC008237.4/89028-89134 AC008237.4/89551-89657 AE003748.3/100246-100352 AE003748.3/99119-99225 M24607.1/301-407,88424-88530 89028-89134 89551-89657,0,106,AC008237.4/89028-89134
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5608,AC008237.4,1,sp|AC008237.4|AC008237 Drosophila melanogaster; chromosome 3R; region 96A-96A; BAC clone BACR47D16; complete sequence.,0,14,89551,89657,134.17,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,M24605.1/96-202 AC008237.4/88424-88530 M24606.1/401-507 AE003748.3/99723-99829 AC008237.4/89028-89134 AC008237.4/89551-89657 AE003748.3/100246-100352 AE003748.3/99119-99225 M24607.1/301-407,88424-88530 89028-89134 89551-89657,0,106,AC008237.4/89551-89657
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6134,AC024750.1,1,sp|AC024750.1|AC024750 Caenorhabditis elegans cosmid Y17G9A; complete sequence.,0,15,32088,32189,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,32088-32189 30012-29911,0,101,AC024750.1/32088-32189
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6134,AC024750.1,1,sp|AC024750.1|AC024750 Caenorhabditis elegans cosmid Y17G9A; complete sequence.,1,16,30012,29911,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,32088-32189 30012-29911,0,101,AC024750.1/30012-29911
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6263,AC024882.1,1,sp|AC024882.1|AC024882 Caenorhabditis elegans cosmid Y9C9A; complete sequence.,0,17,21090,21191,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,21090-21191,0,101,AC024882.1/21090-21191
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6344,AC084459.1,1,sp|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19; complete sequence.,0,18,37443,37544,128.55,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCGAAUUUUU,AC084459.1/37443-37544,40175-40276 37443-37544 77156-77257,0,101,AC084459.1/37443-37544
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6344,AC084459.1,1,sp|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19; complete sequence.,0,19,40175,40276,133.75,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU,AC084459.1/40175-40276,40175-40276 37443-37544 77156-77257,0,101,AC084459.1/40175-40276
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6344,AC084459.1,1,sp|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19; complete sequence.,0,20,77156,77257,94.53,UGUCGGUGCUUGAGGUGAAAGUUCUUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU,AC084459.1/77156-77257,40175-40276 37443-37544 77156-77257,0,101,AC084459.1/77156-77257
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6350,AC084465.1,1,sp|AC084465.1|AC084465 Caenorhabditis briggsae cosmid CB039B01; complete sequence.,1,21,35805,35704,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,35805-35704,0,101,AC084465.1/35805-35704
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6352,AC084467.1,1,sp|AC084467.1|AC084467 Caenorhabditis briggsae cosmid CB043F15; complete sequence.,0,22,46028,46141,80.11,AUUUCUUCUGAACAUAUACUAAAAUUGGAAUAAUACAGAAUAUUAGCAUGGCCCCUGCGCAGGGAUGACACUCAAAUUUGUGACAUUUUUUCACAGAUUUUUUUCCACAUUUUU,AC084467.1/46028-46141,46028-46141 11401-11302,0,113,AC084467.1/46028-46141
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6352,AC084467.1,1,sp|AC084467.1|AC084467 Caenorhabditis briggsae cosmid CB043F15; complete sequence.,1,23,11401,11302,126.01,GUUCUUCCGAGAACAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,AC084467.1/11401-11302,46028-46141 11401-11302,0,99,AC084467.1/11401-11302
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6465,AC084580.1,1,sp|AC084580.1|AC084580 Caenorhabditis briggsae cosmid G40J14; complete sequence.,0,24,20966,21067,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,24772-24873 20966-21067,0,101,AC084580.1/20966-21067
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6465,AC084580.1,1,sp|AC084580.1|AC084580 Caenorhabditis briggsae cosmid G40J14; complete sequence.,0,25,24772,24873,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,24772-24873 20966-21067,0,101,AC084580.1/24772-24873
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6484,AC084599.1,1,sp|AC084599.1|AC084599 Caenorhabditis briggsae cosmid G42P09; complete sequence.,1,26,2628,2528,99.68,GUCCUCCGUCGCCCAGGACCUGUGUUGGAACAAUACAGAGAAGACUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAUUUUUU,AC084599.1/2628-2528,2628-2528,0,100,AC084599.1/2628-2528
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7764,AE003748.3,1,sp|AE003748.3|AE003748 Drosophila melanogaster chromosome 3R; section 86 of 118 of the complete sequence.,0,27,99119,99225,134.17,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,M24605.1/96-202 AC008237.4/88424-88530 M24606.1/401-507 AE003748.3/99723-99829 AC008237.4/89028-89134 AC008237.4/89551-89657 AE003748.3/100246-100352 AE003748.3/99119-99225 M24607.1/301-407,99723-99829 100246-100352 99119-99225,0,106,AE003748.3/99119-99225
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7764,AE003748.3,1,sp|AE003748.3|AE003748 Drosophila melanogaster chromosome 3R; section 86 of 118 of the complete sequence.,0,28,99723,99829,134.17,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,M24605.1/96-202 AC008237.4/88424-88530 M24606.1/401-507 AE003748.3/99723-99829 AC008237.4/89028-89134 AC008237.4/89551-89657 AE003748.3/100246-100352 AE003748.3/99119-99225 M24607.1/301-407,99723-99829 100246-100352 99119-99225,0,106,AE003748.3/99723-99829
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7764,AE003748.3,1,sp|AE003748.3|AE003748 Drosophila melanogaster chromosome 3R; section 86 of 118 of the complete sequence.,0,29,100246,100352,134.17,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,M24605.1/96-202 AC008237.4/88424-88530 M24606.1/401-507 AE003748.3/99723-99829 AC008237.4/89028-89134 AC008237.4/89551-89657 AE003748.3/100246-100352 AE003748.3/99119-99225 M24607.1/301-407,99723-99829 100246-100352 99119-99225,0,106,AE003748.3/100246-100352
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,9216,AF016427.2,1,sp|AF016427.2|AF016427 Caenorhabditis elegans cosmid F32D1; complete sequence.,0,30,12941,13044,121.45,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUAACUUU,AF016427.2/12941-13044,12941-13044,0,103,AF016427.2/12941-13044
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,9824,AF022975.2,1,sp|AF022975.2|AF022975 Caenorhabditis elegans cosmid K09C6; complete sequence.,0,31,23345,23446,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,23345-23446,0,101,AF022975.2/23345-23446
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11198,AF038623.2,1,sp|AF038623.2|AF038623 Caenorhabditis elegans cosmid T08B6; complete sequence.,1,32,9791,9690,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,9791-9690,0,101,AF038623.2/9791-9690
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,13210,AF067211.2,1,sp|AF067211.2|AF067211 Caenorhabditis elegans cosmid B0205; complete sequence.,0,33,18505,18613,78.11,GCUCUUCCGAGAACAUAUACUAAAAUUGGACUAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUAACACGCAAAAGUAGACGUUCCAACCGACACGCCUCUUUA,AF067211.2/18505-18613,18505-18613,0,108,AF067211.2/18505-18613
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,15493,AF095841.1,1,sp|AF095841.1|AF095841 Entosiphon sulcatum U6 snRNA gene; complete sequence.,0,34,1,107,107.83,GUGCUCGCUUUGGCAGCACUUACACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCACGGUCCCUGGGCAAGGAUGACACACAAGUUCGUGAAGCGUUCCAUAUUUUU,AF095841.1/1-107,1-107,0,106,AF095841.1/1-107
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,35290,AF305715.1,1,sp|AF305715.1|AF305715 Leishmania tarentolae tRNA-Glu gene; partial sequence; and U6 small nuclear RNA gene; complete sequence.,0,35,117,214,88.47,GCCCCUUCGGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,AF305715.1/117-214 X82228.1/412-509,117-214,0,97,AF305715.1/117-214
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,6466,AF529186.1,1,sp|AF529186.1|AF529186 Taenia solium U6 snRNA and U5 snRNA genes; complete sequence.,0,36,459,564,121.25,GUAUCUCCUCGGAGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUC,AF529186.1/459-564,459-564,0,105,AF529186.1/459-564
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,13569,L26849.1,1,sp|L26849.1|ALSNRNAA Ascaris lumbricoides small nuclear RNA (snRNA) U6-2 gene.,0,37,150,253,132.32,GUUCAUUCCGAUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,L26849.1/150-253,150-253,0,103,L26849.1/150-253
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,13570,L26850.1,1,sp|L26850.1|ALSNRNAB Ascaris lumbricoides small nuclear RNA (snRNA) U6-3 gene.,0,38,101,204,128.16,GUUCAUUCCGAUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUC,L26850.1/101-204,101-204,0,103,L26850.1/101-204
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,13575,L22252.1,1,sp|L22252.1|ALSNUE Ascaris lumbricoides small nuclear RNA (snRNA) U6-1 gene.,0,39,132,235,128.88,GUUCAUUCCGAUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAGUUCGUGAAGCGUUCCAAAUUUUU,L22252.1/132-235,132-235,0,103,L22252.1/132-235
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,20452,AY060382.1,1,sp|AY060382.1|AY060382 Drosophila melanogaster LD27504 full length cDNA.,0,40,2,93,108.13,GAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,AY060382.1/2-93,2-93,0,91,AY060382.1/2-93
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,22228,AY069457.1,1,sp|AY069457.1|AY069457 Drosophila melanogaster LD18251 full insert cDNA.,0,41,1,77,70.89,UUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,AY069457.1/1-77,1-77,0,76,AY069457.1/1-77
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43367,Z32680.1,1,sp|Z32680.1|CEC28A5 Caenorhabditis elegans cosmid C28A5,1,42,1731,1630,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,1731-1630,0,101,Z32680.1/1731-1630
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44019,U53333.1,1,sp|U53333.1|CEF36A4 Caenorhabditis elegans cosmid F36A4; complete sequence.,0,43,1100,1201,125.48,UUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUAUAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,U53333.1/1100-1201,1100-1201,0,101,U53333.1/1100-1201
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44193,Z22178.2,1,sp|Z22178.2|CEF54C8 Caenorhabditis elegans cosmid F54C8,0,44,12015,12116,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,15673-15774 13963-13862 12015-12116,0,101,Z22178.2/12015-12116
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44193,Z22178.2,1,sp|Z22178.2|CEF54C8 Caenorhabditis elegans cosmid F54C8,0,45,15673,15774,132.89,GUUCUUCCAAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z22178.2/15673-15774,15673-15774 13963-13862 12015-12116,0,101,Z22178.2/15673-15774
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44193,Z22178.2,1,sp|Z22178.2|CEF54C8 Caenorhabditis elegans cosmid F54C8,1,46,13963,13862,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,15673-15774 13963-13862 12015-12116,0,101,Z22178.2/13963-13862
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44197,U12966.2,1,sp|U12966.2|CEF54D8 Caenorhabditis elegans cosmid F54D8; complete sequence.,1,47,5169,5068,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,5169-5068,0,101,U12966.2/5169-5068
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44488,Z83114.1,1,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11,0,48,23131,23232,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,24936-25037 27779-27880 24687-24586 23131-23232 27530-27429 19920-19819,0,101,Z83114.1/23131-23232
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44488,Z83114.1,1,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11,0,49,24936,25037,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,24936-25037 27779-27880 24687-24586 23131-23232 27530-27429 19920-19819,0,101,Z83114.1/24936-25037
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44488,Z83114.1,1,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11,0,50,27779,27880,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,24936-25037 27779-27880 24687-24586 23131-23232 27530-27429 19920-19819,0,101,Z83114.1/27779-27880
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44488,Z83114.1,1,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11,1,51,27530,27429,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,24936-25037 27779-27880 24687-24586 23131-23232 27530-27429 19920-19819,0,101,Z83114.1/27530-27429
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44488,Z83114.1,1,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11,1,52,24687,24586,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,24936-25037 27779-27880 24687-24586 23131-23232 27530-27429 19920-19819,0,101,Z83114.1/24687-24586
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44488,Z83114.1,1,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11,1,53,19920,19819,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,24936-25037 27779-27880 24687-24586 23131-23232 27530-27429 19920-19819,0,101,Z83114.1/19920-19819
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44900,Z32683.1,1,sp|Z32683.1|CER07E5 Caenorhabditis elegans cosmid R07E5,0,54,21127,21228,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,21127-21228,0,101,Z32683.1/21127-21228
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45034,X51387.1,1,sp|X51387.1|CESNU61 Caenorhabditis elegans DNA encoding U6-1 snRNA,0,55,158,259,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,158-259,0,101,X51387.1/158-259
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45035,X51388.1,1,sp|X51388.1|CESNU62 Caenorhabditis elegans DNA encoding U6-2 snRNA,0,56,158,259,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,158-259,0,101,X51388.1/158-259
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45215,Z68220.1,1,sp|Z68220.1|CET20D3 Caenorhabditis elegans cosmid T20D3,0,57,8066,8169,123.72,GUUCCAAUUCUAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z68220.1/8066-8169,8066-8169,0,103,Z68220.1/8066-8169
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45215,Z68220.1,1,sp|Z68220.1|CET20D3 Caenorhabditis elegans cosmid T20D3,1,58,8093,7996,105.12,AUUUUAGUAUAUGUUCUAGAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,****    NEW  HIT  #0  ****,8066-8169,1,27,Z68220.1/8093-7996
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45385,X07829.1,1,sp|X07829.1|CEU6 Caenorhabditis elegans U6 small nuclear RNA,0,59,1,102,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,1-102,0,101,X07829.1/1-102
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45767,Z81138.1,1,sp|Z81138.1|CEW05B2 Caenorhabditis elegans cosmid W05B2,0,60,34964,35065,135.23,GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU,Z81138.1/34964-35065 AF038623.2/9791-9690 AC084465.1/35805-35704 AC084580.1/24772-24873 AF022975.2/23345-23446 Z22178.2/13963-13862 Z22178.2/12015-12116 X51387.1/158-259 U12966.2/5169-5068 Z83114.1/24936-25037 Z83114.1/27779-27880 Z83114.1/24687-24586 AC084580.1/20966-21067 X07829.1/1-102 Z83114.1/23131-23232 Z32683.1/21127-21228 AC024750.1/32088-32189 Z83114.1/27530-27429 AC024750.1/30012-29911 AC024882.1/21090-21191 Z83114.1/19920-19819 X51388.1/158-259 Z32680.1/1731-1630,34964-35065,0,101,Z81138.1/34964-35065
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46285,X78551.1,1,sp|X78551.1|CFRNAAC1 C.fasciculata U6 snRNA; tRNA-Ile and tRNA-Gln genes; clone AC1.,0,61,329,426,79.62,GCCCCUUCGGGGGACAUCCACCACCUGGAAAUUCAAUAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,X78551.1/329-426 X78550.1/325-422,329-426,0,97,X78551.1/329-426
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,46286,X78550.1,1,sp|X78550.1|CFRNAE11 C.fasciculata U6 snRNA; tRNA-Ile and tRNA-Gln genes; clone E11.,0,62,325,422,79.62,GCCCCUUCGGGGGACAUCCACCACCUGGAAAUUCAAUAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,X78551.1/329-426 X78550.1/325-422,325-422,0,97,X78550.1/325-422
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,4722,X06669.1,1,sp|X06669.1|DMU6 Drosophila melanogaster U6 snRNA,0,63,2,108,129.10,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCAGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,X06669.1/2-108,2-108,0,106,X06669.1/2-108
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,4967,M24605.1,1,sp|M24605.1|DMURUB1 Drosophila melanogaster U6-1 snRNA gene; complete sequence.,0,64,96,202,134.17,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,M24605.1/96-202 AC008237.4/88424-88530 M24606.1/401-507 AE003748.3/99723-99829 AC008237.4/89028-89134 AC008237.4/89551-89657 AE003748.3/100246-100352 AE003748.3/99119-99225 M24607.1/301-407,96-202,0,106,M24605.1/96-202
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,4968,M24606.1,1,sp|M24606.1|DMURUB2 Drosophila melanogaster U6-2 snRNA gene; complete sequence.,0,65,401,507,134.17,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,M24605.1/96-202 AC008237.4/88424-88530 M24606.1/401-507 AE003748.3/99723-99829 AC008237.4/89028-89134 AC008237.4/89551-89657 AE003748.3/100246-100352 AE003748.3/99119-99225 M24607.1/301-407,401-507,0,106,M24606.1/401-507
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,4969,M24607.1,1,sp|M24607.1|DMURUC3 Drosophila melanogaster U6-3 snRNA gene; complete sequence.,0,66,301,407,134.17,GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,M24605.1/96-202 AC008237.4/88424-88530 M24606.1/401-507 AE003748.3/99723-99829 AC008237.4/89028-89134 AC008237.4/89551-89657 AE003748.3/100246-100352 AE003748.3/99119-99225 M24607.1/301-407,301-407,0,106,M24607.1/301-407
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,7305,U43841.1,1,sp|U43841.1|EH43841 Entamoeba histolytica U6 small nuclear RNA gene; complete sequence.,0,67,336,439,117.61,AUCCACUUCGGUGGAAAUCCCAUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCUCAUACGAGAAGUUAAAAAGUUUUUU,U43841.1/336-439,336-439,0,103,U43841.1/336-439
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,10564,X79014.1,1,sp|X79014.1|LCSNTRNA L.collosoma snRNA-U6; tRNA-Gln and tRNA-Ile.,0,68,475,572,88.13,GCCCCUUCGGGGGACAUCCACAACCUGGAACUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,X79014.1/475-572,475-572,0,97,X79014.1/475-572
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,11399,X82228.1,1,sp|X82228.1|LMU6SNRNA L.mexicana U6 snRNA and tRNA-Gln genes,0,69,412,509,88.47,GCCCCUUCGGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,AF305715.1/117-214 X82228.1/412-509,412-509,0,97,X82228.1/412-509
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,11785,X78552.1,1,sp|X78552.1|LSRNA L.seymouri (ATCC 30220) U6 snRNA; tRNA-Ile and tRNA-Gln genes.,0,70,318,415,84.54,GCCCCUUCGGGGGACAUCCACAAUCUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,X78552.1/318-415,318-415,0,97,X78552.1/318-415
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,18408,X82229.1,1,sp|X82229.1|PSU6SNRNA Phytomonas sp. U6 snRNA and tRNA-Gln genes,0,71,194,291,83.42,GCCCCUUCGGGGGACAUCCACAACCUGGAACUUCAACAGACAAGAUUAGCAUUCUCCCUGCGCAAGGCCGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,X82229.1/194-291,194-291,0,97,X82229.1/194-291
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,21052,L25920.1,1,sp|L25920.1|SMU6RNAA Schistosoma mansoni U6 small nuclear RNA.,0,72,3,109,125.47,GUACUCGCUUCGGCGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUUCGUGAAGCGUUCCAUAUUUU,L25920.1/3-109,3-109,0,106,L25920.1/3-109
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,21349,X76389.1,1,sp|X76389.1|SPSNRNAU S.purpuratus U6.1 gene for small nuclear RNA,0,73,1447,1553,129.94,GUGUUAGCUUCGGCAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU,X76546.1/281-387 X76389.1/1447-1553,1447-1553,0,106,X76389.1/1447-1553
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,21434,X76546.1,1,sp|X76546.1|SPU62SNR S.purpuratus U6.2 gene for U6 small nuclear RNA,0,74,281,387,129.94,GUGUUAGCUUCGGCAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU,X76546.1/281-387 X76389.1/1447-1553,281-387,0,106,X76546.1/281-387
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,22459,X57046.1,1,sp|X57046.1|TBTRNA3 Trypanosoma brucei tRNA-tyr; tRNA-thr & U6 snRNA genes,0,75,441,536,86.61,GCCCUUCGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,X57046.1/441-536 M25778.1/104-199 X13017.1/157-252,441-536,0,95,X57046.1/441-536
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,22491,X13017.1,1,sp|X13017.1|TBU6RNA Trypanosoma brucei U6 small nuclear RNA gene,0,76,157,252,86.61,GCCCUUCGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,X57046.1/441-536 M25778.1/104-199 X13017.1/157-252,157-252,0,95,X13017.1/157-252
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,22507,M25778.1,1,sp|M25778.1|TBURNAD Trypanosoma small nuclear RNA (uRNA D) gene.,0,77,104,199,86.61,GCCCUUCGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU,X57046.1/441-536 M25778.1/104-199 X13017.1/157-252,104-199,0,95,M25778.1/104-199
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,24876,X53789.1,1,sp|X53789.1|TTRU6SNR T.tridentatus U6 snRNA genes (1 & 2) for U6 small nuclear RNAs (partial),0,78,1,80,77.95,AAAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU,X53789.1/1-80,1-80,0,79,X53789.1/1-80
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,24887,X63790.1,1,sp|X63790.1|TTSNRU62 T.thermophila gene  for snRNA U6-2,0,79,28,129,109.67,GCCCGAAAGGGCAUCUGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU,X63790.1/28-129,28-129,0,101,X63790.1/28-129
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,24888,X63791.1,1,sp|X63791.1|TTSNRU63 T.thermophila genes for snRNA U6-3; snRNA U6-4,0,80,1,102,102.36,CCCGAAAGGGUCCUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU,X63791.1/1-102,1-102,0,101,X63791.1/1-102
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,24929,X58843.1,1,sp|X58843.1|TTU61 T.thermophila U6.1 snRNA,0,81,3,106,111.18,AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU,X58843.1/3-106,3-106,0,103,X58843.1/3-106
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,2599,AB054536.1,1,sp|AB054536.1|AB054536 Pan troglodytes LTB; TNF alpha; LTA; IKBL; ATP6G; BAT1; Patr-MIC and Patr-B genes; complete cds.,1,82,124607,124501,91.49,GUACUCGCUUUGGCAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGCCCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA,AB054536.1/124607-124501 AB100082.1/124607-124501,124607-124501,0,106,AB054536.1/124607-124501
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,3498,AB064998.1,1,sp|AB064998.1|AB064998 Macaca fascicularis BBH mRNA for gamma butyrobetaine hydroxylase; complete cds.,0,83,1,86,94.30,AUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AK001867.1/1-86 AB064998.1/1-86,1-86,0,85,AB064998.1/1-86
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,3822,AB071055.1,1,sp|AB071055.1|AB071055 Macaca fascicularis testis cDNA clone:QtsA-14588; full insert sequence.,0,84,1367,1472,66.71,GUGCUCGCUUCAGCAGCACACAGACCAAAACAGGAGUGACACUGAGAAGAUUAGCGUGGCCCUGCACAAGGAUGACACACAAAUUCAUGAAGCGUUCCAUAUUUUG,AB071055.1/1367-1472,1367-1472,0,105,AB071055.1/1367-1472
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,5706,AB100082.1,1,sp|AB100082.1|AB100082 Pan troglodytes DNA; major histocompatibility complex class I region; section 1/6.,1,85,124607,124501,91.49,GUACUCGCUUUGGCAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGCCCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA,AB054536.1/124607-124501 AB100082.1/124607-124501,124607-124501,0,106,AB100082.1/124607-124501
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7027,AC087806.3,1,sp|AC087806.3|AC087806 Papio cynocephalus anubis clone RP41-187H19; complete sequence.,1,86,115795,115692,116.48,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUA,AC087806.3/115795-115692,115795-115692,0,103,AC087806.3/115795-115692
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7118,AC092859.26,1,sp|AC092859.26|AC092859 Pan troglodytes clone rp43-111m15; complete sequence.,0,87,93894,94000,120.65,GUGCUUGCUUUGGUAGCACAUGUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGUCCCCGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AC092859.26/93894-94000,93894-94000,0,106,AC092859.26/93894-94000
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7119,AC092874.2,1,sp|AC092874.2|AC092874 Sus scrofa clone RP44-326F1; complete sequence.,1,88,42084,41986,79.59,GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAACCAAAUUCGUUUUUUUUGUUGUU,AC092874.2/42084-41986,42084-41986,0,98,AC092874.2/42084-41986
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7160,AC098645.3,1,sp|AC098645.3|AC098645 Papio anubis clone RP41-470J23; complete sequence.,1,89,98670,98564,81.08,GUGCUCUGCUUGGCAGCACAUAUGCAAAAAUAGGAAAGAUACAGAGAAGAUUAUCAUGGCCCUUAUGCAAGGAUGACACACACAUUUAUGAAGCAUUUUAUAUUUUU,AC098645.3/98670-98564,98670-98564,0,106,AC098645.3/98670-98564
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7196,AC118584.17,1,sp|AC118584.17|AC118584 Papio anubis clone rp41-78d16; complete sequence.,1,90,1606,1500,75.60,GUGCUCCCUUUGGCGGCACAUAUGCUAAAAUUGGAAUGAUACAGAGAAAAUUAGCAUGGCGUCUGAACAAGAAUGACACACAAAUUCAUGAAGCAUUCCAUAUAUAA,AC118584.17/1606-1500,1606-1500,0,106,AC118584.17/1606-1500
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7269,AC129961.2,1,sp|AC129961.2|AC129961 Sus scrofa; clone RP44-428N16; complete sequence.,0,91,39497,39620,90.81,AUGCUGUGGUUGCUUCGGUAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUCAGCAUGCCCCCCUCCCCUCCCCCUGCACAAGGAUGACAUGCAAAUUAGUGAAGUGUUCCAUAUUUUC,AC129961.2/39497-39620,39497-39620,0,123,AC129961.2/39497-39620
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7277,AC136964.2,1,sp|AC136964.2|AC136964 Sus scrofa domestica clone RP44-154L9; complete sequence.,0,92,84202,84308,114.04,GUGCUCGCUUUGGCAGCACCUAUAUUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGCGAAGCGUUCCAUAUUUUU,AC136964.2/84202-84308,84202-84308,0,106,AC136964.2/84202-84308
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7278,AC136966.2,1,sp|AC136966.2|AC136966 Bos taurus clone RP42-221D7; complete sequence.,0,93,109704,109811,68.43,GCGCUCACUUCAGCAGCACAUAUACUAAAUACAGAUAUGAUACAAAGAAGAUUGGCGUGGCCCCUGUGCAAGGAUUACAUGCAAAUUUGUGAAGCUUUCCAUAUUUUU,AC136966.2/109704-109811,109704-109811,0,107,AC136966.2/109704-109811
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7292,AC140951.1,1,sp|AC140951.1|AC140951 Pan troglodytes BAC clone RP43-60K3 from 7; complete sequence.,0,94,62387,62495,99.03,GUGCAUGCUUCGGUAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUCAGCAUGGCCCCUGCACAAAGAUGACAUGCAAAUUUGUGUUGCGUUCCAUAUUUGCUU,AC140951.1/62387-62495,62387-62495,0,108,AC140951.1/62387-62495
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7294,AC140953.1,1,sp|AC140953.1|AC140953 Pan troglodytes BAC clone RP43-37K18 from 7; complete sequence.,1,95,186532,186429,87.92,UUUGCUUCAGCAACAUGUAUACUAAAAUUGGAAUGAUAUAGAGAAGAUAAGCAUGGCCCCUGCACAAGGAUGACACACAAAUUCAUGAAGCGUCCCAUAUUUUA,AC019210.7/48899-49002 AC011228.9/50367-50470 AC140953.1/186532-186429,186532-186429,0,103,AC140953.1/186532-186429
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7301,AC142288.1,1,sp|AC142288.1|AC142288 Pan troglodytes chromosome 7 clone RP43-178D12; complete sequence.,0,96,142463,142566,86.71,GUUGCUUUGGCAGCAUAUAAACUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCUUGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU,AC145475.1/118930-118827 AC142288.1/142463-142566,142463-142566,0,103,AC142288.1/142463-142566
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7303,AC142290.1,1,sp|AC142290.1|AC142290 Pan troglodytes chromosome 7 clone RP43-180M6; complete sequence.,1,97,180346,180243,92.25,GUGCUCAUUUUGGCAGUACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCUCUGAGCAAGGAUGACAUGCAAAUUCAUGAAGUAUUCCAUAUA,AC018705.10/27895-27998 AC142290.1/180346-180243,180346-180243,0,103,AC142290.1/180346-180243
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7312,AC142300.1,1,sp|AC142300.1|AC142300 Pan troglodytes chromosome 7 clone RP43-127J18; complete sequence.,0,98,41511,41613,76.73,UUGCUUCAGCAGCAAGUGUACUAAAAUUAAAACAAUAUAGAGAAGAUUAGCAUGAUCCCUGCACAAGUAUGACACACAAAUUUGCGAAGCAUUCUAUUUUUUU,AC142300.1/41511-41613,41511-41613,0,102,AC142300.1/41511-41613
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7383,AC144780.1,1,sp|AC144780.1|AC144780 Pan troglodytes chromosome 7 clone RP43-2J12; complete sequence.,0,99,174380,174484,93.31,GUGCUUGCUUUGACAGCACAUAUACUAAAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUUA,AC144780.1/174380-174484,174380-174484,0,104,AC144780.1/174380-174484
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7390,AC145475.1,1,sp|AC145475.1|AC145475 Pan troglodytes chromosome 7 clone RP43-34K7; complete sequence.,1,100,118930,118827,86.71,GUUGCUUUGGCAGCAUAUAAACUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCUUGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU,AC145475.1/118930-118827 AC142288.1/142463-142566,118930-118827,0,103,AC145475.1/118930-118827
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,398,AB010266.1,1,sp|AB010266.1|AB010266 Mus musculus Creb-rp; Tnx and Cyp21 genes for cAMP response element binding protein-related protein; tenascin-X and steroid 21-,1,101,33261,33155,130.26,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AB010266.1/33261-33155 AC024950.3/41292-41398 AF030001.1/164177-164071 AC006289.1/164198-164092,33261-33155,0,106,AB010266.1/33261-33155
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,2636,AB049427.1,1,sp|AB049427.1|AB049427 Mus musculus DNA; clone:201; derived from 4x chromosome of T(X;4)37H translocation.,0,102,884,990,103.55,GUGCUCACUUCAGCAGCCCAUAUACUAAAAUUGGAACAAUACAGAGAAGCUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAGUUCAUGAAGUGUUCCAUAUUCUU,AB049427.1/884-990 AL929027.9/6563-6457,884-990,0,106,AB049427.1/884-990
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4560,AC006289.1,1,sp|AC006289.1|AC006289 Mus musculus chromosome 17; clone 29_N_7; complete sequence.,1,103,164198,164092,130.26,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AB010266.1/33261-33155 AC024950.3/41292-41398 AF030001.1/164177-164071 AC006289.1/164198-164092,164198-164092,0,106,AC006289.1/164198-164092
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4598,AC011013.17,1,sp|AC011013.17|AC011013 Mus musculus chromosome 11; clone RP23-218N2; complete sequence.,0,104,108246,108349,99.70,GUGCUUGCUUCGGCAGCACAUAUACUACAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGAAUGACACACAAAUUCAUGAAGCGUUCCAUAUU,AL592489.13/99656-99759 AC011013.17/108246-108349,108246-108349,0,103,AC011013.17/108246-108349
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4610,AC015584.18,1,sp|AC015584.18|AC015584 Mus musculus; clone RP23-400H17; complete sequence.,0,105,61516,61624,80.99,GGGCUCACCUAAGCAGCACAUAUACUUAAACCGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACAAAAAUUCAGGAAGCCUUCAACUUGUUUUU,AC015584.18/61516-61624 AL928644.12/109574-109682 AC132943.2/153174-153282,61516-61624,0,108,AC015584.18/61516-61624
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4617,AC018559.31,1,sp|AC018559.31|AC018559 Mus musculus chromosome 6 clone ct7-596k8 strain 129/Sv; complete sequence.,1,106,3931,3834,82.19,GUGCUCGCUUCAGCAGCACAUAUACUAAAAAAUUGGAACGAUACAGAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUUA,AC018559.31/3931-3834,3931-3834,0,97,AC018559.31/3931-3834
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4654,AC024950.3,1,sp|AC024950.3|AC024950 Mus musculus chromosome 6 clone RP23-208N9 strain C57BL6/J; complete sequence.,0,107,41292,41398,130.26,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AB010266.1/33261-33155 AC024950.3/41292-41398 AF030001.1/164177-164071 AC006289.1/164198-164092,41292-41398,0,106,AC024950.3/41292-41398
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4666,AC026682.14,1,sp|AC026682.14|AC026682 Mus musculus 11 BAC RP23-201K2 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence.,1,108,120870,120764,117.32,GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGACCCUUGCGCAAGGAUGACACGCAAAUUCCUGAAGUGUUCCAUAUUUUU,AL669884.7/57401-57507 AC026682.14/120870-120764,120870-120764,0,106,AC026682.14/120870-120764
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4724,AC069308.21,1,sp|AC069308.21|AC069308 Mus musculus Strain C57BL6/J Chromosome 8 RP23-21B7; complete sequence.,1,109,24848,24742,127.36,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUCCGUGAAGCGUUCCAUAAUUUU,AC069308.21/24848-24742,24848-24742,0,106,AC069308.21/24848-24742
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4823,AC083817.19,1,sp|AC083817.19|AC083817 Mus musculus 1 BAC RP23-470G12 (Roswell Park Cancer Institute Mouse BAC) complete sequence.,1,110,47359,47253,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,47359-47253,0,106,AC083817.19/47359-47253
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4845,AC084162.3,1,sp|AC084162.3|AC084162 Mus musculus chromosome 5 clone RP23-11P12 strain C57BL6/J; complete sequence.,0,111,76481,76587,127.62,GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU,AC084162.3/76481-76587,76481-76587,0,106,AC084162.3/76481-76587
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4849,AC084272.41,1,sp|AC084272.41|AC084272 Mus musculus clone rp23-11g21 map 3 strain C57BL/6J; complete sequence.,0,112,101765,101871,86.37,AUACUCGCUCCAGCAGCACAUAUACUAAAACUGGAACAAUAUAGAGAAGAUUAGCAUGGCCCCUGUGCAAAGAUCACACUCAAAUUCAUGAAGAGUUCCAUAUUUUU,AC084272.41/101765-101871 AC131769.3/86755-86861,101765-101871,0,106,AC084272.41/101765-101871
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4877,AC087040.6,1,sp|AC087040.6|AC087040 Mus musculus 1 BAC RP23-269M3 (RPCI Mouse BAC) complete sequence.,0,113,38403,38509,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,38403-38509,0,106,AC087040.6/38403-38509
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4884,AC087114.7,1,sp|AC087114.7|AC087114 Mus musculus Strain C57BL6/J Chromosome 10 RP23-309M23; complete sequence.,0,114,65498,65604,128.81,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG,AL161665.5/19221-19327 AC087114.7/141809-141915 AC087114.7/65498-65604 X06980.1/316-422 AL161665.5/20445-20339,141809-141915 65498-65604,0,106,AC087114.7/65498-65604
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4884,AC087114.7,1,sp|AC087114.7|AC087114 Mus musculus Strain C57BL6/J Chromosome 10 RP23-309M23; complete sequence.,0,115,141809,141915,128.81,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG,AL161665.5/19221-19327 AC087114.7/141809-141915 AC087114.7/65498-65604 X06980.1/316-422 AL161665.5/20445-20339,141809-141915 65498-65604,0,106,AC087114.7/141809-141915
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4887,AC087117.9,1,sp|AC087117.9|AC087117 Mus Musculus Strain C57BL6/J chromosome 17 BAC; RP23-349B4; Complete Sequence; complete sequence.,0,116,157835,157938,80.90,GAGCUCUCUUCAGUAGCACUCACACUAAAAUUGGAAAGAUACAGAGAUUAGCAUGGCCCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU,AF397035.1/71155-71258 AF109905.1/71964-72067 AC087117.9/157835-157938 AF397036.1/71693-71796,157835-157938,0,103,AC087117.9/157835-157938
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4920,AC087891.12,1,sp|AC087891.12|AC087891 Mus musculus Strain C57BL6/J Chromosome 10 RP23-440N1; complete sequence.,1,117,72282,72176,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,72282-72176,0,106,AC087891.12/72282-72176
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4938,AC090495.5,1,sp|AC090495.5|AC090495 Genomic sequence for Mus musculus; clone RP23-60B7; complete sequence.,1,118,64287,64181,126.90,GUGCUCGCUUCGGCAACACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAACUCGUGAAGCGUUCCAUAUUUUU,AC090495.5/64287-64181,64287-64181,0,106,AC090495.5/64287-64181
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4945,AC090652.32,1,sp|AC090652.32|AC090652 Mus musculus chromosome 7 clone rp23-116a10 strain C57BL/6J; complete sequence.,0,119,41935,42041,130.13,GUGUUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AC090652.32/41935-42041,41935-42041,0,106,AC090652.32/41935-42041
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4947,AC090654.38,1,sp|AC090654.38|AC090654 Mus musculus clone rp23-329p1 map 14 strain C57BL/6J; complete sequence.,0,120,99838,99939,101.00,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUUGUGAAGCAUUCGAAA,AC090654.38/99838-99939,99838-99939,0,101,AC090654.38/99838-99939
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4969,AC091452.1,1,sp|AC091452.1|AC091452 Mus musculus chromosome X clone RP21-124C16; complete sequence.,0,121,133599,133705,105.11,AUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGAAUAACAUGCAAACUCGUGAAGCAUUCCAUACUUUC,AC091452.1/133599-133705 AL731695.11/12187-12293,133599-133705,0,106,AC091452.1/133599-133705
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4977,AC091521.19,1,sp|AC091521.19|AC091521 Mus musculus chromosome 1 clone rp23-145f9; complete sequence.,1,122,118741,118635,117.22,AUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCGUGAAGCAUUCCAUAUUUCU,AC091521.19/118741-118635,118741-118635,0,106,AC091521.19/118741-118635
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5052,AC097354.11,1,sp|AC097354.11|AC097354 Mus musculus clone ct7-297f7 strain 129/Sv; complete sequence.,0,123,112355,112461,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,157134-157237 112355-112461,0,106,AC097354.11/112355-112461
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5052,AC097354.11,1,sp|AC097354.11|AC097354 Mus musculus clone ct7-297f7 strain 129/Sv; complete sequence.,0,124,157134,157237,66.58,GUGCUCACUUCAGCAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAUUAGCAUGACCCCAGAACAAGGAUGCUAUGCAGAUUCAUAAAGCGUUCCAUAAUUUU,AC097354.11/157134-157237 AL672082.15/50002-50105,157134-157237 112355-112461,0,103,AC097354.11/157134-157237
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5055,AC098567.4,1,sp|AC098567.4|AC098567 Genomic sequence for Mus musculus; clone RP23-198E6; from chromosome 17; complete sequence.,1,125,164318,164212,102.24,GUGCUCUCUUCAGCAACACAUAUACUAAAAUUGGAAAGAUACAGAGAAUAUUAGCAUGGCCUCUGUGCAAGGAUGAAAUGCAAAUUCGUGAAGCUUUCCAUAUUUUU,AC098567.4/164318-164212,164318-164212,0,106,AC098567.4/164318-164212
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5104,AC098875.3,1,sp|AC098875.3|AC098875 Mus musculus clone RP23-1E10; complete sequence.,0,126,198138,198244,125.05,AUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAUAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AC098875.3/198138-198244,198138-198244,0,106,AC098875.3/198138-198244
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5152,AC100746.4,1,sp|AC100746.4|AC100746 Mus musculus; clone RP24-399G21; complete sequence.,1,127,65133,65027,128.40,GUGCUUGCUUCGGCAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU,AC100746.4/65133-65027,65133-65027,0,106,AC100746.4/65133-65027
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5184,AC101931.8,1,sp|AC101931.8|AC101931 Mus musculus; clone RP24-63O23; complete sequence.,0,128,77587,77690,110.19,GGCCAAUAUGAUGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGUAUGGCCCUUGCGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU,AC101931.8/77587-77690,77587-77690,0,103,AC101931.8/77587-77690
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5213,AC102527.6,1,sp|AC102527.6|AC102527 Mus musculus; clone RP23-29G4; complete sequence.,0,129,174936,175034,72.25,UUGCUUCUGCAGCACAUAUACUAAAAUUGGAAGGAUACAGAGUAGAUUAGCAUGGCCCCUGCGCAAAGGAUGCAAAUUCGUGAAGUGUUCCAUAAAAAU,AC102527.6/174936-175034,174936-175034,0,98,AC102527.6/174936-175034
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5245,AC104099.5,1,sp|AC104099.5|AC104099 Mus musculus clone RP24-372J8; complete sequence.,1,130,97806,97703,95.68,GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAAAGAAGAUGAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUU,AC104099.5/97806-97703,97806-97703,0,103,AC104099.5/97806-97703
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5256,AC104327.5,1,sp|AC104327.5|AC104327 Mus musculus chromosome 3 clone rp23-295a4 strain C57BL/6J; complete sequence.,0,131,207763,207869,122.93,GUGCUCGCUUCGGCAACACAUAUACUAAAAUUGGAACAAUACAGAAAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AY115108.1/465-359 AC104327.5/207763-207869,207763-207869,0,106,AC104327.5/207763-207869
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5260,AC104518.5,1,sp|AC104518.5|AC104518 Mus Musculus Strain 129S6/SvEvTac chromosome 17 BAC; RP22-187D17; Complete Sequence; complete sequence.,1,132,153579,153473,124.79,GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU,AC104518.5/153579-153473,153579-153473,0,106,AC104518.5/153579-153473
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5263,AC104832.8,1,sp|AC104832.8|AC104832 Mus Musculus Strain C57BL6/J Chromosome 12 BAC; RP23-38P6; complete sequence.,0,133,48102,48208,133.66,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU,AC104832.8/48102-48208 AL844856.6/130647-130753 AL590992.12/46920-47026 AC105950.11/116604-116710 AC119816.5/161689-161795,48102-48208,0,106,AC104832.8/48102-48208
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5290,AC105950.11,1,sp|AC105950.11|AC105950 Mus musculus; clone RP24-386J17; complete sequence.,0,134,116604,116710,133.66,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU,AC104832.8/48102-48208 AL844856.6/130647-130753 AL590992.12/46920-47026 AC105950.11/116604-116710 AC119816.5/161689-161795,116604-116710,0,106,AC105950.11/116604-116710
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5315,AC108435.5,1,sp|AC108435.5|AC108435 Mus musculus; clone RP23-229O20; complete sequence.,1,135,181163,181027,75.86,GUGCUCACUUCAGCAGCACAUAUACCAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAAAAUUGGAAAUAUAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGAUACACAAAUUUGUGAAGUGUUUCAUUUUUUU,AC108435.5/181163-181027,181163-181027,0,136,AC108435.5/181163-181027
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5339,AC109280.9,1,sp|AC109280.9|AC109280 Mus musculus; clone RP23-400B7; complete sequence.,0,136,165770,165876,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,165770-165876,0,106,AC109280.9/165770-165876
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5355,AC110090.6,1,sp|AC110090.6|AC110090 Mus musculus chromosome 1 clone RP23-27L4; complete sequence.,0,137,93142,93248,134.03,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AC110090.6/93142-93248,93142-93248,0,106,AC110090.6/93142-93248
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5452,AC113301.7,1,sp|AC113301.7|AC113301 Mus musculus; clone RP23-430G7; complete sequence.,1,138,54850,54747,93.80,GUGCUUGCUUUGGUAGUACAUAUACUAAAAUCGGAACACAGAGAAUAUUAGCAUGGCCCCUGCGCAAGGAUGGCAUGCAAAUUAGUGAAGUGUUCCAUAUUUUC,AC113301.7/54850-54747,54850-54747,0,103,AC113301.7/54850-54747
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5537,AC116319.4,1,sp|AC116319.4|AC116319 Mus musculus chromosome 14 clone RP23-265J2; complete sequence.,1,139,123156,123058,66.38,UUGCUUUGGCUGCACAUAUACUAAAAUUAGAACGAUAUAAAGAAUAUUAUCAUGGCCCCUGCAUAAGAAUGACAUGCAAAUUAGUGAAGUGUUCUGUUA,AC116319.4/123156-123058,123156-123058,0,98,AC116319.4/123156-123058
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5581,AC116657.3,1,sp|AC116657.3|AC116657 Mus musculus clone RP23-289E18; complete sequence.,1,140,157204,157098,133.66,GUGCUCGCUUCGGUAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU,AC116657.3/157204-157098,157204-157098,0,106,AC116657.3/157204-157098
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5617,AC117204.3,1,sp|AC117204.3|AC117204 Mus musculus chromosome 18 clone RP23-256L23; complete sequence.,1,141,63673,63567,133.91,GUGCUCACUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU,AC117204.3/63673-63567,63673-63567,0,106,AC117204.3/63673-63567
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5660,AC117260.3,1,sp|AC117260.3|AC117260 Mus musculus chromosome 18 clone RP24-498G10; complete sequence.,0,142,60341,60447,115.26,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAAAAGAUUAGCAUGGCCCCUGCGCAAGAAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU,AC117260.3/60341-60447,60341-60447,0,106,AC117260.3/60341-60447
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5664,AC117275.3,1,sp|AC117275.3|AC117275 Mus musculus chromosome 18 clone RP23-383F11; complete sequence.,1,143,5989,5883,105.00,GUGCUCAUUUCAGCAGGACAUAUACUAAAAUUAGAAUGCUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACGAAAAUUAGUGAAGUGUUCCAUAUUUUU,AC117275.3/5989-5883,5989-5883,0,106,AC117275.3/5989-5883
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5671,AC117633.6,1,sp|AC117633.6|AC117633 Mus musculus; clone RP23-200C8; complete sequence.,1,144,12990,12884,118.45,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAUAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCGUAUUUUU,AC117633.6/12990-12884 AC121949.3/81706-81812,12990-12884,0,106,AC117633.6/12990-12884
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5716,AC119816.5,1,sp|AC119816.5|AC119816 Mus musculus; clone RP23-59B8; complete sequence.,0,145,149003,149108,114.53,GUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUAGCCCCUGCACAAGGAUGACACACAAAUUCAGAAGCAUUCCAUAUUUUU,AC138173.1/143685-143790 AC119816.5/149003-149108,149003-149108 161689-161795,0,105,AC119816.5/149003-149108
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5716,AC119816.5,1,sp|AC119816.5|AC119816 Mus musculus; clone RP23-59B8; complete sequence.,0,146,161689,161795,133.66,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU,AC104832.8/48102-48208 AL844856.6/130647-130753 AL590992.12/46920-47026 AC105950.11/116604-116710 AC119816.5/161689-161795,149003-149108 161689-161795,0,106,AC119816.5/161689-161795
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5747,AC121575.4,1,sp|AC121575.4|AC121575 Mus musculus chromosome 1 clone RP23-241P4; complete sequence.,0,147,172659,172765,67.14,GUGCUUUCUUCAGGAGCAUGUAUGCUAAAACUGGCAUGAUGUAGAGAAGAAUAGCAUGGCCCCUGCACAAGGAUGCCAUGCAAAUCUGUGAAGCAUCCGAAAUUUUU,AC121575.4/172659-172765,172659-172765,0,106,AC121575.4/172659-172765
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5768,AC121599.3,1,sp|AC121599.3|AC121599 Mus musculus chromosome 14 clone RP23-300H21; complete sequence.,0,148,72112,72214,94.44,UCGCUUUGGCAGCCUAUAUACUAAAACGGGGACGAUACAGAGAAGAUUAGCAUGGCCCUUGCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAGUUUU,AC121599.3/72112-72214,72112-72214,0,102,AC121599.3/72112-72214
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5775,AC121608.3,1,sp|AC121608.3|AC121608 Mus musculus chromosome 9 clone RP23-317M3; complete sequence.,1,149,59758,59652,105.81,CUGCUCGCUUUGGCAACAUAUAUACUAAAAUUGGAACGAUACUGACAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACAUGCAAAUUCGUGAAGCGAUCCAUAUUUUU,AC121608.3/59758-59652 AL672208.11/23403-23509,59758-59652,0,106,AC121608.3/59758-59652
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5788,AC121780.3,1,sp|AC121780.3|AC121780 Mus musculus chromosome 5 clone RP23-360J14; complete sequence.,1,150,116442,116336,132.47,GUGCUCGCUUCGGAAGCACAUAUACUAAAAUUGGAACGACACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU,AC121780.3/116442-116336,116442-116336,0,106,AC121780.3/116442-116336
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5819,AC121819.3,1,sp|AC121819.3|AC121819 Mus musculus chromosome 8 clone RP23-460F21; complete sequence.,1,151,31517,31411,123.42,GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACGCGCAAAUUUGUGAAGCGUUCCAUAUUUUU,AC121819.3/31517-31411,31517-31411,0,106,AC121819.3/31517-31411
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5830,AC121833.3,1,sp|AC121833.3|AC121833 Mus musculus chromosome 3 clone RP24-69C16; complete sequence.,0,152,162480,162586,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,180843-180740 162480-162586,0,106,AC121833.3/162480-162586
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5830,AC121833.3,1,sp|AC121833.3|AC121833 Mus musculus chromosome 3 clone RP24-69C16; complete sequence.,1,153,180843,180740,92.19,GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGCUACAGAGAUUAGCAUGGCCCCUGCACAAGGGUGACACACAAAUUCCUGAAGCGUUCCAUAUUUUU,AC121833.3/180843-180740,180843-180740 162480-162586,0,103,AC121833.3/180843-180740
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5852,AC121861.3,1,sp|AC121861.3|AC121861 Mus musculus chromosome 1 clone RP24-108P23; complete sequence.,0,154,8750,8858,104.43,GUGCUGGCUUCGGCAGCACAUAUAUACUAAAAUUGGAACUAUACAGAGAAGGUUAGCAUGGCCCCUGUGCAAGGAUGGCAUGCAAAUUUGUGAACUGUUCCAUAAUUUU,AC121861.3/8750-8858,8750-8858,0,108,AC121861.3/8750-8858
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5861,AC121870.2,1,sp|AC121870.2|AC121870 Mus musculus chromosome 9 clone RP24-121D5; complete sequence.,1,155,157699,157593,124.81,GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUU,AC121870.2/157699-157593,157699-157593,0,106,AC121870.2/157699-157593
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5880,AC121893.3,1,sp|AC121893.3|AC121893 Mus musculus chromosome 16 clone RP24-157C12; complete sequence.,0,156,22954,23060,123.18,GUGCUCACUUCGGCAGUACAUAUACUAAAAUUGGAACUAUACAGAGAAGAUUAGCAUGGCCCCUGAACAAGGAUGACACGCAUAUUCGUGAAGUGUUCCAUAUUUUU,AC121893.3/22954-23060,22954-23060,0,106,AC121893.3/22954-23060
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5903,AC121917.2,1,sp|AC121917.2|AC121917 Mus musculus chromosome 5 clone RP24-194F23; complete sequence.,1,157,67667,67564,106.13,GUGCUCCCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACUCAAAUUCGUGAAGCGUUCCAUUUUUUU,AC121917.2/67667-67564,67667-67564,0,103,AC121917.2/67667-67564
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5932,AC121949.3,1,sp|AC121949.3|AC121949 Mus musculus chromosome 18 clone RP24-215I11; complete sequence.,0,158,81706,81812,118.45,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAUAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCGUAUUUUU,AC117633.6/12990-12884 AC121949.3/81706-81812,81706-81812,0,106,AC121949.3/81706-81812
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5948,AC121969.3,1,sp|AC121969.3|AC121969 Mus musculus chromosome 3 clone RP24-273J2; complete sequence.,0,159,22211,22317,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,22211-22317,0,106,AC121969.3/22211-22317
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5965,AC121989.2,1,sp|AC121989.2|AC121989 Mus musculus clone RP24-298C8; complete sequence.,0,160,60277,60383,125.93,GUGCUCGCUUCGGCAGCACAUGUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCCCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AC121989.2/60277-60383,60277-60383,0,106,AC121989.2/60277-60383
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5981,AC122010.3,1,sp|AC122010.3|AC122010 Mus musculus chromosome 8 clone RP24-349I15; complete sequence.,1,161,21204,21107,87.13,GUGCUCGCUUCUACAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUUCACAAGGAAAUUUGUGAAGCGUUCCAUAUUUUU,AC122010.3/21204-21107,21204-21107,0,97,AC122010.3/21204-21107
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6030,AC122187.3,1,sp|AC122187.3|AC122187 Mus musculus chromosome 1 clone RP23-21P2; complete sequence.,0,162,117113,117219,109.52,GUCCUCGCUUCGGCAGCACGUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCUUGGCCCCUGCACAAGGAUGACACGCAAAUUCAUGACACAUUCCAUAUUUUU,AC122187.3/117113-117219,117113-117219,0,106,AC122187.3/117113-117219
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6052,AC122232.3,1,sp|AC122232.3|AC122232 Mus musculus chromosome 7 clone RP23-136G1; complete sequence.,1,163,39049,38943,107.05,UUGCUUGCUUCGUCAGCACAUAGACUAAAAUUGGAACAAUACAGAGAAAAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUCU,AC122232.3/39049-38943,39049-38943,0,106,AC122232.3/39049-38943
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6066,AC122256.3,1,sp|AC122256.3|AC122256 Mus musculus chromosome 7 clone RP23-178H7; complete sequence.,0,164,54548,54654,133.32,GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AC122256.3/54548-54654,54548-54654,0,106,AC122256.3/54548-54654
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6080,AC122276.4,1,sp|AC122276.4|AC122276 Mus musculus chromosome 6 clone RP23-230D23; complete sequence.,1,165,111111,111005,102.04,AUACUCGAUUCGGCAGCAUAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAUCAUGGCCCCUGCACAAGGAUGACACGCAAAUUUAUAAAGCGUUCCAAAUUGUU,AC122276.4/111111-111005,111111-111005,0,106,AC122276.4/111111-111005
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6113,AC122332.4,1,sp|AC122332.4|AC122332 Mus musculus chromosome 10 clone RP23-346G14; complete sequence.,0,166,170503,170609,112.90,GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAAGAUUAGCAUGGCCCAUGCACAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUU,AC122332.4/170503-170609,170503-170609,0,106,AC122332.4/170503-170609
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6134,AC122369.4,1,sp|AC122369.4|AC122369 Mus musculus chromosome 6 clone RP23-454D13; complete sequence.,1,167,18923,18816,133.48,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUUCGUGAAGCGUUCCAUAUUUUU,AC122369.4/18923-18816,18923-18816,0,107,AC122369.4/18923-18816
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6148,AC122388.5,1,sp|AC122388.5|AC122388 Mus musculus chromosome 16 clone RP24-80J12; complete sequence.,1,168,72450,72344,125.65,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCGAAUUCAUGAAGCGUUCCAUAUUUUU,AC122388.5/72450-72344,72450-72344,0,106,AC122388.5/72450-72344
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6158,AC122400.4,1,sp|AC122400.4|AC122400 Mus musculus chromosome 7 clone RP24-103C10; complete sequence.,1,169,115553,115447,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,115553-115447,0,106,AC122400.4/115553-115447
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6199,AC122471.4,1,sp|AC122471.4|AC122471 Mus musculus chromosome 2 clone RP24-322M5; complete sequence.,1,170,59099,59001,69.72,CUCCCUUCCAGCACAUAUACUAAAAUUGGAAUAACACAGAGAAGAUUAGCAUGGUCUCCACACAAGGAUGUCACACAAAUUCAUGAACUGUUCCAUAUU,AC122471.4/59099-59001 AC145450.4/165347-165445 AL732309.9/101258-101356,59099-59001,0,98,AC122471.4/59099-59001
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6231,AC122526.4,1,sp|AC122526.4|AC122526 Mus musculus chromosome 14 clone RP24-500M11; complete sequence.,0,171,85634,85731,72.99,GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAAGAUGACACACACACACACACACACACA,AC122526.4/85634-85731 AC125405.4/178020-178117,85634-85731,0,97,AC122526.4/85634-85731
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6236,AC122537.4,1,sp|AC122537.4|AC122537 Mus musculus chromosome 7 clone RP24-548A15; complete sequence.,0,172,54550,54656,131.00,GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUCGUGAAACGUUCCAUAUUUUU,AC122537.4/54550-54656 AC122863.4/220215-220321,54550-54656,0,106,AC122537.4/54550-54656
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6254,AC122807.3,1,sp|AC122807.3|AC122807 Mus musculus chromosome 8 clone RP23-297H3; complete sequence.,0,173,125692,125793,109.36,GUGCUCGCAGCACAUAUACUAAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGUAGGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU,AC122807.3/125692-125793,125692-125793,0,101,AC122807.3/125692-125793
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6303,AC122863.4,1,sp|AC122863.4|AC122863 Mus musculus chromosome 7 clone RP23-142A14; complete sequence.,0,174,220215,220321,131.00,GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUCGUGAAACGUUCCAUAUUUUU,AC122537.4/54550-54656 AC122863.4/220215-220321,220215-220321 56560-56454,0,106,AC122863.4/220215-220321
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6303,AC122863.4,1,sp|AC122863.4|AC122863 Mus musculus chromosome 7 clone RP23-142A14; complete sequence.,1,175,56560,56454,108.12,GUGCUUGCUUCAGCAGCACAUAUUCUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCAAUCCAUAUUUAA,AC122863.4/56560-56454,220215-220321 56560-56454,0,106,AC122863.4/56560-56454
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6355,AC123028.4,1,sp|AC123028.4|AC123028 Mus musculus chromosome 10 clone RP24-553H21; complete sequence.,0,176,85795,85901,87.06,GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAAGAUUAGCAUGGCCCGUGCACAAAAAUGAUAUGCAAAUUUAUGUAGCAUUUCAUGUUUUU,AC123028.4/85795-85901,85795-85901,0,106,AC123028.4/85795-85901
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6421,AC123815.3,1,sp|AC123815.3|AC123815 Mus musculus chromosome 9 clone RP24-238O19; complete sequence.,1,177,84931,84826,103.55,GUGCUCGAUUCAGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCAGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU,AC123815.3/84931-84826,84931-84826,0,105,AC123815.3/84931-84826
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6456,AC123870.3,1,sp|AC123870.3|AC123870 Mus musculus chromosome 15 clone RP23-246A19; complete sequence.,0,178,92153,92259,91.38,GUGCUCGAUUCAGUAGCACAUAUACUAAAAUUGGAACGAUACCUAGAAGAUUAGCAUGGCCGCUGAGCAAGGAUGACAUGGAAAUCUGUGAAGUGUUCCAUAAUUAA,AC123870.3/92153-92259,92153-92259,0,106,AC123870.3/92153-92259
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6467,AC123929.4,1,sp|AC123929.4|AC123929 Mus musculus chromosome 12 clone RP24-434E14; complete sequence.,0,179,96227,96333,124.51,GUGCUCGCUUAGGCAGCACAUAUACUAAAAUUGAAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCUUUCCAUAUUUUU,AC123929.4/96227-96333,96227-96333,0,106,AC123929.4/96227-96333
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6494,AC124027.1,1,sp|AC124027.1|AC124027 Mus musculus chromosome X clone RP21-282L18; complete sequence.,1,180,4580,4474,79.76,GUGCUCACUUCAGAACCACAUAUACUAAAAUUAGAAUGAUUCAUCGAAGAUUAGCAUGGCCCCUGCCCACGGAUGACAUACAAAUUUAUGAAGUAUUCCAUAUUUUU,AL845304.4/105950-105844 AC124027.1/4580-4474,4580-4474,0,106,AC124027.1/4580-4474
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6504,AC124175.2,1,sp|AC124175.2|AC124175 Mus musculus chromosome 1 clone RP23-183N18; complete sequence.,0,181,116013,116119,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,116013-116119,0,106,AC124175.2/116013-116119
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6549,AC124372.4,1,sp|AC124372.4|AC124372 Mus musculus chromosome 16 clone RP24-556P17; complete sequence.,0,182,64799,64905,104.85,GUGCUCACUUCAACAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGUAUGGCCCCUGAGCAAGGAUGCCAUGCAAAUUUGUGAAGUGUUCAAUAUUUUU,AC124372.4/64799-64905,64799-64905,0,106,AC124372.4/64799-64905
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6569,AC124400.4,1,sp|AC124400.4|AC124400 Mus musculus chromosome 14 clone RP24-357O21; complete sequence.,0,183,189709,189815,134.37,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,K03239.1/1074-1180 X07425.1/266-372 AC083904.27/116776-116882 AL671671.5/6628-6522 AC122400.4/115553-115447 AJ400878.1/111851-111957 AK001495.1/1-107 AL138764.21/46594-46700 AK026948.1/8-114 AC125487.3/99582-99688 M14486.1/329-435 AC097354.11/112355-112461 AC010894.10/81280-81174 AC022254.11/141404-141510 AL731658.20/81945-81839 AL844582.7/82112-82006 Z98950.1/55822-55928 AC124175.2/116013-116119 AC126280.4/199921-199815 AC124400.4/189709-189815 AL772324.5/127091-127197 AC121833.3/162480-162586 AC087891.12/72282-72176 AC109280.9/165770-165876 AC121969.3/22211-22317 AL833788.8/73219-73325 AC083817.19/47359-47253 AC087040.6/38403-38509 AL845292.4/164209-164103 AC112706.2/46517-46623 X59362.1/1-107 AC112131.7/37499-37393 AL603843.15/97152-97046 AC009292.11/155721-155615 AL627238.15/193644-193538 AC004528.1/39749-39855 AC092074.3/21649-21755 AL672082.15/5221-5327,189709-189815,0,106,AC124400.4/189709-189815
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6575,AC124407.4,1,sp|AC124407.4|AC124407 Mus musculus chromosome 10 clone RP24-389C22; complete sequence.,1,184,20725,20622,109.89,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGAAAAUUCGUGAAGCCUUUAAUAUU,AC124407.4/20725-20622 D82019.1/1695-1592,20725-20622,0,103,AC124407.4/20725-20622
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6708,AC124686.3,1,sp|AC124686.3|AC124686 Mus musculus chromosome 10 clone RP24-422F20; complete sequence.,0,185,61741,61847,131.13,GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU,AC124686.3/61741-61847,61741-61847,0,106,AC124686.3/61741-61847
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6715,AC124695.4,1,sp|AC124695.4|AC124695 Mus musculus chromosome 7 clone RP24-172H24; complete sequence.,0,186,4340,4444,87.75,UUGAGUGCUUGCUUCAGCAGCACAAACUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACACGCACAUUUGUGAAGUGUUCCAUAUUUUU,AC124695.4/4340-4444,4340-4444,0,104,AC124695.4/4340-4444
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6723,AC124708.2,1,sp|AC124708.2|AC124708 Mus musculus chromosome 6 clone RP24-79O16; complete sequence.,1,187,47392,47286,124.15,GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACAUGCAAAUUCGUGAAGCAUUCCAUAUUUUU,AC124708.2/47392-47286,47392-47286,0,106,AC124708.2/47392-47286
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6727,AC124713.5,1,sp|AC124713.5|AC124713 Mus musculus chromosome 8 clone RP24-116N2; complete sequence.,0,188,98597,98703,131.32,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUACAUAUUUUU,AC124713.5/98597-98703,98597-98703,0,106,AC124713.5/98597-98703
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6733,AC124724.4,1,sp|AC124724.4|AC124724 Mus musculus chromosome 19 clone RP23-446L16; complete sequence.,1,189,106518,106412,126.74,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGUCCCUGCGCAAGGGUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU,AC124724.4/106518-106412,106518-106412,0,106,AC124724.4/106518-106412
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6763,AC125037.4,1,sp|AC125037.4|AC125037 Mus musculus chromosome 3 clone RP23-332H20; complete sequence.,0,190,198087,198199,108.46,AUCCUUGUGAUCGCUUCGGCAGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGUACCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUAU,AC127260.3/73392-73280 AC125037.4/198087-198199,198087-198199,0,112,AC125037.4/198087-198199
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00026.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6798,AC125092.4,1,sp|AC125092.4|AC125092 Mus musculus chromosome 12 clone RP24-174F18; complete sequence.,0,191,48861,48967,126.94,GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUUGUGAAGCGUUCCAUAUUUUU,AC125092.4/48861-48967 AC127337.4/175813-175919,48861-48967,0,106,AC125092.4/48861-48967
./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecol