Params: ./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: recycle.cs.washington.edu pid: 29175 ----cmFile: Rfam/cm/RF00026.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #9201,sp|AF053588.1|AF053588 Nosema locustae U6 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: UGCAGUUUGCUGCGCUAUUAGUUUGGAACAACACUGAGAAGAUUAGCAUGGCCCCUGCGCAAGGACGGCAUCUUUCUUUGAGAGGUGUGCUGGGCUCGCCCAGCUUUU hit 0 : 116 223 (fwd) 89.66 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 ::C:+UU G+:G:: U+U UUGGAAC+A AC GAGAAGAUUAGCAUGGCCCCUG 116 UGCAGUUUGCUGCGCUAUUA---GUUUGGAACAACACUGAGAAGAUUAGCAUGGCCCCUG 172 :::::::::::::::::::::::::::::.........::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaU.........gUUCCaaaUUUUU 102 CGCAAGGA G CA+ +U +U GAGA++U + CC+A+ UUUU 173 CGCAAGGACGGCAUCUUUCUUUGAGAGGUgugcugggcUCGCCCAGCUUUU 223 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #44263,sp|AY136823.1|AY136823 Aspergillus niger U6 small nuclear RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUCCGUUGUAACAGCCUUUGGACAUAUGCUCGACAUUGCUAAAUUGGAACGAUACAGAGACGAUAGCAUGUCCCCUGCGCAAGGAUGACGUUACAAAUCGAGAUAUUCGUUUUAGGCUUUU hit 1 : 412 532 (fwd) 92.73 bits <<<<<...........____>>>>>::::::.........:::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgc.........UAAAAUUGGAACgAUACAGA 40 GUCC: UU :GGACAU+UGC AAAUUGGAACGAUACAGA 412 GUCCGuuguaacagccUU--UGGACAUAUGCucgacauugCUAAAUUGGAACGAUACAGA 469 :::::::::::::::::::::::::::::::::::::::::::::::::..::::::::: 41 GAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU..gUUCCaaaU 98 GA GAU AGCAUG CCCCUGCGCAAGGAUGAC + +AAUCGAGA AU GUU A + 470 GACGAU-AGCAUGUCCCCUGCGCAAGGAUGACGUUACAAAUCGAGAUAUucGUUUUAGGC 528 :::: 99 UUUU 102 UUUU 529 UUUU 532 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58706,sp|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) ----isReversed: 1 ----hitSequence: UAGUUUUCUACCGCCAUUGAUUUGGAACAACACAGAGAAGAUUAGCAUGGCCCCUGCGUAAGGACGACAUGUAUAACUUGAGAGGUCGCUGGAUGUAGAUCCGGCUUUU hit 2 : 66611 66503 (rev) 79.41 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 : :: UUC :: : +U A UUGGAAC+A ACAGAGAAGAUUAGCAUGGCCCCUG 171537 UAGUUUUC-UACCGCCAUUG---AUUUGGAACAACACAGAGAAGAUUAGCAUGGCCCCUG 171592 :::::::::::::::::::::.::::::::..........::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaU..........gUUCCaaaUUUUU 102 CG AAGGA GACA+G AUAA GAGA++U + + C+ + UUUU 171593 CGUAAGGACGACAUGUAUAACuUGAGAGGUcgcuggauguAGAUCCGGCUUUU 171645 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64936,sp|AL389901.1|NCB7F21 Neurospora crassa DNA linkage group II BAC clone B7F21 ----isReversed: 1 ----hitSequence: CGCCCUUCGGGGCAAUUUGGUCAAUUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACUAAGGAUGACACGCUACUCAAAGAGACGCUACCAAAUUUUU hit 3 : 34740 34637 (rev) 103.76 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :CCCUUCGGGG: AU UG U AA UUG AACGAUACAGAGAAGAUUAGCAUGGCCCCUG 24673 CGCCCUUCGGGGCAAUUUGGUCAAUUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 24732 :::.:::::::::::::::::::::::::::.:::::::::::: 61 CGC.AAGGAUGACACGcauAaUCGAGAaaUg.UUCCaaaUUUUU 102 C C AAGGAUGACACGC++ + AGA+A G U+CCAAAUUUUU 24733 CACuAAGGAUGACACGCUACUCAAAGAGACGcUACCAAAUUUUU 24776 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #69362,sp|X89514.1|SCCHXIILA S.cerevisiae DNA from chromosome XII right arm ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 4 : 2843 2955 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 2843 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 2902 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 2903 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 2955 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #70401,sp|U53878.1|SCL9354 Saccharomyces cerevisiae chromosome XII cosmid 9354. ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 5 : 1298 1410 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 1298 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 1357 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 1358 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 1410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #71645,sp|X12565.1|SCSNR6 Yeast SNR6 gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 6 : 540 652 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 540 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 599 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 600 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 652 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #74436,sp|Z73279.1|SCYLR107W S.cerevisiae chromosome XII reading frame ORF YLR107w ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 7 : 2843 2955 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 2843 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 2902 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 2903 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 2955 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #74437,sp|Z73280.1|SCYLR108C S.cerevisiae chromosome XII reading frame ORF YLR108c ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 8 : 1298 1410 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 1298 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 1357 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 1358 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 1410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #76465,sp|Z98762.1|SPAC4A8 S.pombe chromosome I cosmid c4A8. ----isReversed: 1 ----hitSequence: UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCGAGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAAACCCAUUUUUU hit 9 : 24176 24025 (rev) 89.72 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::............. 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUU............. 47 ::::CUUCGG:::: U UG U AAAUUG AACGAUACAGAGAAGAUU 19720 UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUguaaguaacaaua 19779 .....................................::::::::::::::::::::::: 48 .....................................AGCAUGGCCCCUGCGCAAGGAUG 70 AGCAUGGCCCCUGC CAAGGAUG 19780 uuuaccaagguucgagucauacuaacucguuguuuagAGCAUGGCCCCUGCACAAGGAUG 19839 :::::::::::.::::::::::::::::::::: 71 ACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 ACAC A + GAGA+A + +CC+A UUUUU 19840 ACACUGCGACAuUGAGAGA-AAACCCAUUUUUU 19871 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #77616,sp|X14196.1|SPSNRNA Yeast U6 small nuclear RNA gene ----isReversed: 0 ----hitSequence: UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCGAGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAAACCCAUUUUUU hit 10 : 133 284 (fwd) 89.72 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::............. 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUU............. 47 ::::CUUCGG:::: U UG U AAAUUG AACGAUACAGAGAAGAUU 133 UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUguaaguaacaaua 192 .....................................::::::::::::::::::::::: 48 .....................................AGCAUGGCCCCUGCGCAAGGAUG 70 AGCAUGGCCCCUGC CAAGGAUG 193 uuuaccaagguucgagucauacuaacucguuguuuagAGCAUGGCCCCUGCACAAGGAUG 252 :::::::::::.::::::::::::::::::::: 71 ACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 ACAC A + GAGA+A + +CC+A UUUUU 253 ACACUGCGACAuUGAGAGA-AAACCCAUUUUUU 284 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #77788,sp|M55650.1|SPUGU6Q1 S.pombe U6 snRNA gene, partial exons 1 and 2. ----isReversed: 0 ----hitSequence: GAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCGAGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAAACCCAUUUU hit 11 : 1 149 (fwd) 81.64 bits <<<<<____>>>>>:.::::::::::::::::::::::::::::::::............ 1 GucCcUUCGgGgaCA.UcUgcUAAAAUUGGAACgAUACAGAGAAGAUU............ 47 G::C UUCG G::CA U UG U AAAUUG AACGAUACAGAGAAGAUU 1 GAUC-UUCG-GAUCAcUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUguaaguaacaau 58 ......................................:::::::::::::::::::::: 48 ......................................AGCAUGGCCCCUGCGCAAGGAU 69 AGCAUGGCCCCUGC CAAGGAU 59 auuuaccaagguucgagucauacuaacucguuguuuagAGCAUGGCCCCUGCACAAGGAU 118 ::::::::::::.::::::::::::::::::::: 70 GACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 GACAC A + GAGA+A + +CC+A UUUU 119 GACACUGCGACAuUGAGAGA-AAACCCA--UUUU 149 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5608,sp|AC008237.4|AC008237 Drosophila melanogaster, chromosome 3R, region 96A-96A, BAC clone BACR47D16, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 12 : 88424 88530 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 88424 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 88483 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 88484 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 88530 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5608,sp|AC008237.4|AC008237 Drosophila melanogaster, chromosome 3R, region 96A-96A, BAC clone BACR47D16, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 13 : 89028 89134 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 89028 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 89087 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 89088 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 89134 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5608,sp|AC008237.4|AC008237 Drosophila melanogaster, chromosome 3R, region 96A-96A, BAC clone BACR47D16, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 14 : 89551 89657 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 89551 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 89610 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 89611 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 89657 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6134,sp|AC024750.1|AC024750 Caenorhabditis elegans cosmid Y17G9A, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 15 : 32088 32189 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 32088 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 32147 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 32148 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 32189 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6134,sp|AC024750.1|AC024750 Caenorhabditis elegans cosmid Y17G9A, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 16 : 30012 29911 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 11324 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 11383 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 11384 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 11425 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6263,sp|AC024882.1|AC024882 Caenorhabditis elegans cosmid Y9C9A, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 17 : 21090 21191 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 21090 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 21149 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 21150 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 21191 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6344,sp|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCGAAUUUUU hit 18 : 37443 37544 (fwd) 128.55 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCA GGCCCCUG 37443 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGCCCCUG 37502 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCC AAUUUUU 37503 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCGAAUUUUU 37544 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6344,sp|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU hit 19 : 40175 40276 (fwd) 133.75 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 40175 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 40234 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAA UUUU 40235 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU 40276 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6344,sp|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19, complete sequence. ----isReversed: 0 ----hitSequence: UGUCGGUGCUUGAGGUGAAAGUUCUUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU hit 20 : 77156 77257 (fwd) 94.53 bits <<<<<...____>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 : :C U G G: :A + UUGGAAC+AUACAGAGAAGAUUAGCAUGGCCC 77156 UGUCGgugCUUGAGGUGAAAGUU---CUUUGGAACAAUACAGAGAAGAUUAGCAUGGCCC 77212 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAA UUUU 77213 CUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU 77257 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6350,sp|AC084465.1|AC084465 Caenorhabditis briggsae cosmid CB039B01, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 21 : 35805 35704 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 46556 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 46615 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 46616 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 46657 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6352,sp|AC084467.1|AC084467 Caenorhabditis briggsae cosmid CB043F15, complete sequence. ----isReversed: 0 ----hitSequence: AUUUCUUCUGAACAUAUACUAAAAUUGGAAUAAUACAGAAUAUUAGCAUGGCCCCUGCGCAGGGAUGACACUCAAAUUUGUGACAUUUUUUCACAGAUUUUUUUCCACAUUUUU hit 22 : 46028 46141 (fwd) 80.11 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :U:: UUC ::A:AU+U+CUAAAAUUGGAA +AUAC AGAA AUUAGCAUGGCCCCUG 46028 AUUUCUUC-UGAACAUAUACUAAAAUUGGAAUAAUAC--AGAAUAUUAGCAUGGCCCCUG 46084 :::::::::::::::::::::::::::::...............::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaU...............gUUCCaaaUUUUU 102 CGCA GGAUGACAC CA+A+U G GA AU +UUCCA AUUUUU 46085 CGCAGGGAUGACACUCAAAUUUGUGACAUuuuuucacagauuuuUUUCCACAUUUUU 46141 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6352,sp|AC084467.1|AC084467 Caenorhabditis briggsae cosmid CB043F15, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 23 : 11401 11302 (rev) 126.01 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU++ UAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 45111 GUUCUUCCGAGAACAUAC--UAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 45168 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 45169 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 45210 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6465,sp|AC084580.1|AC084580 Caenorhabditis briggsae cosmid G40J14, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 24 : 20966 21067 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 20966 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 21025 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 21026 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 21067 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6465,sp|AC084580.1|AC084580 Caenorhabditis briggsae cosmid G40J14, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 25 : 24772 24873 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 24772 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 24831 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 24832 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 24873 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6484,sp|AC084599.1|AC084599 Caenorhabditis briggsae cosmid G42P09, complete sequence. ----isReversed: 1 ----hitSequence: GUCCUCCGUCGCCCAGGACCUGUGUUGGAACAAUACAGAGAAGACUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAUUUUUU hit 26 : 2628 2528 (rev) 99.68 bits <<<<<..____...>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG...gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GUCC: UCG :GGAC U UG UGGAAC+AUACAGAGAAGA UAGCAUGGC 41624 GUCCUccGUCGcccAGGACCUGUGU------UGGAACAAUACAGAGAAGACUAGCAUGGC 41677 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAA UUUUU 41678 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAUUUUUU 41724 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7764,sp|AE003748.3|AE003748 Drosophila melanogaster chromosome 3R, section 86 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 27 : 99119 99225 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99119 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99178 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 99179 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 99225 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7764,sp|AE003748.3|AE003748 Drosophila melanogaster chromosome 3R, section 86 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 28 : 99723 99829 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99723 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99782 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 99783 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 99829 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7764,sp|AE003748.3|AE003748 Drosophila melanogaster chromosome 3R, section 86 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 29 : 100246 100352 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 100246 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 100305 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 100306 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 100352 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #9216,sp|AF016427.2|AF016427 Caenorhabditis elegans cosmid F32D1, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUAACUUU hit 30 : 12941 13044 (fwd) 121.45 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 12941 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 13000 :::::::::::::::::::::::::::::::::::::::...::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUU...UUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAU UUU 13001 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAU-aacUUU 13044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #9824,sp|AF022975.2|AF022975 Caenorhabditis elegans cosmid K09C6, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 31 : 23345 23446 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 23345 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 23404 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 23405 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 23446 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11198,sp|AF038623.2|AF038623 Caenorhabditis elegans cosmid T08B6, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 32 : 9791 9690 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 25016 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 25075 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 25076 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 25117 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #13210,sp|AF067211.2|AF067211 Caenorhabditis elegans cosmid B0205, complete sequence. ----isReversed: 0 ----hitSequence: GCUCUUCCGAGAACAUAUACUAAAAUUGGACUAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUAACACGCAAAAGUAGACGUUCCAACCGACACGCCUCUUUA hit 33 : 18505 18613 (fwd) 78.11 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G::C:U CG:G::CAU+U+CUAAAAUUGGA +AUACAGAGAAGAUUAGCAUGGCCCCUG 18505 GCUCUUCCGAGAACAUAUACUAAAAUUGGACUAAUACAGAGAAGAUUAGCAUGGCCCCUG 18564 :::::::::::::::::::::::::::::........::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaU........gUUCCaaaUUUUU 102 CGCAAGGAU ACACGCA+AA AGA +U + +C + UUU 18565 CGCAAGGAUAACACGCAAAAGU-AGACGUuccaaccgACACGCCUCUUUA 18613 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #15493,sp|AF095841.1|AF095841 Entosiphon sulcatum U6 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACUUACACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCACGGUCCCUGGGCAAGGAUGACACACAAGUUCGUGAAGCGUUCCAUAUUUUU hit 34 : 1 107 (fwd) 107.83 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:AC U+++CUAAAAUUGGAA GAUACAGAGAAGAUUAGCA GG 1 GUGCUcgcUUUGgcAGCACUUACACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCACGGU 60 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+ +UCG GAA+ GUUCCA AUUUUU 61 CCCUGGGCAAGGAUGACACACAAGUUCGUGAAGCGUUCCAUAUUUUU 107 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #35290,sp|AF305715.1|AF305715 Leishmania tarentolae tRNA-Glu gene, partial sequence; and U6 small nuclear RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 35 : 117 214 (fwd) 88.47 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCC 117 GCCCCUUCGgGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCC 174 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 175 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 214 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #6466,sp|AF529186.1|AF529186 Taenia solium U6 snRNA and U5 snRNA genes, complete sequence. ----isReversed: 0 ----hitSequence: GUAUCUCCUCGGAGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUC hit 36 : 459 564 (fwd) 121.25 bits <<<<<..____..>>>>>:::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCC 56 GU::C UCG G::ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCC 459 GUAUCucCUCGgaGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCC 518 :::::::::::::::::::::::::::::::::::::::::::::: 57 CCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUU 519 CCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUC 564 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #13569,sp|L26849.1|ALSNRNAA Ascaris lumbricoides small nuclear RNA (snRNA) U6-2 gene. ----isReversed: 0 ----hitSequence: GUUCAUUCCGAUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 37 : 150 253 (fwd) 132.32 bits <<<<<____..>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 GU:C:UUC :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCC 150 GUUCAUUCCgaUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCC 209 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 210 UGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 253 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #13570,sp|L26850.1|ALSNRNAB Ascaris lumbricoides small nuclear RNA (snRNA) U6-3 gene. ----isReversed: 0 ----hitSequence: GUUCAUUCCGAUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUC hit 38 : 101 204 (fwd) 128.16 bits <<<<<____..>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 GU:C:UUC :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCC 101 GUUCAUUCCgaUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCC 160 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUU 161 UGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUC 204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #13575,sp|L22252.1|ALSNUE Ascaris lumbricoides small nuclear RNA (snRNA) U6-1 gene. ----isReversed: 0 ----hitSequence: GUUCAUUCCGAUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAGUUCGUGAAGCGUUCCAAAUUUUU hit 39 : 132 235 (fwd) 128.88 bits <<<<<____..>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 GU:C:UUC :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCC 132 GUUCAUUCCgaUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCC 191 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGCA+ +UCG GAA+ GUUCCAAAUUUUU 192 UGCGCAAGGAUGACACGCAAGUUCGUGAAGCGUUCCAAAUUUUU 235 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #20452,sp|AY060382.1|AY060382 Drosophila melanogaster LD27504 full length cDNA. ----isReversed: 0 ----hitSequence: GAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 40 : 2 93 (fwd) 108.13 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 2 G----------AACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 51 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 52 CGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 93 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #22228,sp|AY069457.1|AY069457 Drosophila melanogaster LD18251 full insert cDNA. ----isReversed: 0 ----hitSequence: UUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 41 : 1 77 (fwd) 70.89 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 U UGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 ------U-------------------UGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 35 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 36 CGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 77 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43367,sp|Z32680.1|CEC28A5 Caenorhabditis elegans cosmid C28A5 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 42 : 1731 1630 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 25581 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 25640 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 25641 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 25682 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44019,sp|U53333.1|CEF36A4 Caenorhabditis elegans cosmid F36A4, complete sequence. ----isReversed: 0 ----hitSequence: UUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUAUAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 43 : 1100 1201 (fwd) 125.48 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :U:C:U CG:G:A:AU+U+CUAAAAUUGGAAC+AUA AGAGAAGAUUAGCAUGGCCCCUG 1100 UUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUAUAGAGAAGAUUAGCAUGGCCCCUG 1159 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 1160 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 1201 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44193,sp|Z22178.2|CEF54C8 Caenorhabditis elegans cosmid F54C8 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 44 : 12015 12116 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 12015 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 12074 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 12075 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 12116 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44193,sp|Z22178.2|CEF54C8 Caenorhabditis elegans cosmid F54C8 ----isReversed: 0 ----hitSequence: GUUCUUCCAAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 45 : 15673 15774 (fwd) 132.89 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U C :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 15673 GUUCUUCCAAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 15732 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 15733 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 15774 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44193,sp|Z22178.2|CEF54C8 Caenorhabditis elegans cosmid F54C8 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 46 : 13963 13862 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 9039 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 9098 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 9099 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 9140 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44197,sp|U12966.2|CEF54D8 Caenorhabditis elegans cosmid F54D8, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 47 : 5169 5068 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 31849 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 31908 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 31909 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 31950 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 48 : 23131 23232 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 23131 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 23190 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 23191 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 23232 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 49 : 24936 25037 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 24936 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 24995 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 24996 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 25037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 50 : 27779 27880 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 27779 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 27838 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 27839 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 27880 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 51 : 27530 27429 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 11272 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 11331 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 11332 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 11373 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 52 : 24687 24586 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 14115 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 14174 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 14175 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 14216 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 53 : 19920 19819 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 18882 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 18941 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 18942 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 18983 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44900,sp|Z32683.1|CER07E5 Caenorhabditis elegans cosmid R07E5 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 54 : 21127 21228 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 21127 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 21186 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 21187 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 21228 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45034,sp|X51387.1|CESNU61 Caenorhabditis elegans DNA encoding U6-1 snRNA ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 55 : 158 259 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 158 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 217 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 218 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45035,sp|X51388.1|CESNU62 Caenorhabditis elegans DNA encoding U6-2 snRNA ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 56 : 158 259 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 158 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 217 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 218 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45215,sp|Z68220.1|CET20D3 Caenorhabditis elegans cosmid T20D3 ----isReversed: 0 ----hitSequence: GUUCCAAUUCUAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 57 : 8066 8169 (fwd) 123.72 bits <<<<<..____.>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 GU:C UUC G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCC 8066 GUUCCaaUUC-uAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCC 8124 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGCGCA GGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 8125 CUGCGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 8169 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45215,sp|Z68220.1|CET20D3 Caenorhabditis elegans cosmid T20D3 ----isReversed: 1 ----hitSequence: AUUUUAGUAUAUGUUCUAGAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 58 : 8093 7996 (rev) 105.12 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :U UU G A:AU U CUA AAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 24587 AUU--UUAG--UAUAUGUUCUAGAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 24642 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCA GGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 24643 CGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 24684 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45385,sp|X07829.1|CEU6 Caenorhabditis elegans U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 59 : 1 102 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 1 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 61 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 102 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45767,sp|Z81138.1|CEW05B2 Caenorhabditis elegans cosmid W05B2 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 60 : 34964 35065 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 34964 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 35023 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 35024 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 35065 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46285,sp|X78551.1|CFRNAAC1 C.fasciculata U6 snRNA, tRNA-Ile and tRNA-Gln genes, clone AC1. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACCACCUGGAAAUUCAAUAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 61 : 329 426 (fwd) 79.62 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C A UGGAA A AGAGAAGAUUAGCA CCC 329 GCCCCUUCGgGGGACAUCCAC-CACC-UGGAAAUUCAaUAGAGAAGAUUAGCACUCUCCC 386 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 387 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 426 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46286,sp|X78550.1|CFRNAE11 C.fasciculata U6 snRNA, tRNA-Ile and tRNA-Gln genes, clone E11. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACCACCUGGAAAUUCAAUAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 62 : 325 422 (fwd) 79.62 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C A UGGAA A AGAGAAGAUUAGCA CCC 325 GCCCCUUCGgGGGACAUCCAC-CACC-UGGAAAUUCAaUAGAGAAGAUUAGCACUCUCCC 382 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 383 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 422 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4722,sp|X06669.1|DMU6 Drosophila melanogaster U6 snRNA ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCAGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 63 : 2 108 (fwd) 129.10 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 2 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 61 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC GCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 62 CCCAGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 108 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4967,sp|M24605.1|DMURUB1 Drosophila melanogaster U6-1 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 64 : 96 202 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 96 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 155 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 156 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 202 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4968,sp|M24606.1|DMURUB2 Drosophila melanogaster U6-2 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 65 : 401 507 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 401 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 460 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 461 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 507 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4969,sp|M24607.1|DMURUC3 Drosophila melanogaster U6-3 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 66 : 301 407 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 301 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 360 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 361 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 407 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #7305,sp|U43841.1|EH43841 Entamoeba histolytica U6 small nuclear RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUCCACUUCGGUGGAAAUCCCAUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCUCAUACGAGAAGUUAAAAAGUUUUUU hit 67 : 336 439 (fwd) 117.61 bits <<<<<.____.>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCc.UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 :UCC: UUCG :GGA:AUC+ UAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCC 336 AUCCAcUUCGgUGGAAAUCCCAUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCC 395 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGC+ A++CGAGAA+U+ + A UUUUU 396 UGCGCAAGGAUGACACGCUCAUACGAGAAGUUAAAAAGUUUUUU 439 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #10564,sp|X79014.1|LCSNTRNA L.collosoma snRNA-U6, tRNA-Gln and tRNA-Ile. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAACCUGGAACUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 68 : 475 572 (fwd) 88.13 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C AA UGGAAC A CAGAGAAGAUUAGCA CCC 475 GCCCCUUCGgGGGACAUCCAC-AACC-UGGAACUUCAaCAGAGAAGAUUAGCACUCUCCC 532 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 533 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 572 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11399,sp|X82228.1|LMU6SNRNA L.mexicana U6 snRNA and tRNA-Gln genes ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 69 : 412 509 (fwd) 88.47 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCC 412 GCCCCUUCGgGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCC 469 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 470 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 509 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11785,sp|X78552.1|LSRNA L.seymouri (ATCC 30220) U6 snRNA, tRNA-Ile and tRNA-Gln genes. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAAUCUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 70 : 318 415 (fwd) 84.54 bits <<<<<____.>>>>>::::::::::::.::::::::::.::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAU.UGGAACgAUA.CAGAGAAGAUUAGCAUGGCCC 57 G:CCCUUCG GGG:CAUC++C AAU UGGAA A CAGAGAAGAUUAGCA CC 318 GCCCCUUCGgGGGACAUCCAC---AAUcUGGAAAUUCAaCAGAGAAGAUUAGCACUCUCC 374 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 375 CUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 415 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #18408,sp|X82229.1|PSU6SNRNA Phytomonas sp. U6 snRNA and tRNA-Gln genes ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAACCUGGAACUUCAACAGACAAGAUUAGCAUUCUCCCUGCGCAAGGCCGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 71 : 194 291 (fwd) 83.42 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C AA UGGAAC A CAGA AAGAUUAGCAU CCC 194 GCCCCUUCGgGGGACAUCCAC-AACC-UGGAACUUCAaCAGACAAGAUUAGCAUUCUCCC 251 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG GA + AU +UCGAGA+AU+U+ C UUUU 252 UGCGCAAGGCCGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 291 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21052,sp|L25920.1|SMU6RNAA Schistosoma mansoni U6 small nuclear RNA. ----isReversed: 0 ----hitSequence: GUACUCGCUUCGGCGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUUCGUGAAGCGUUCCAUAUUUU hit 72 : 3 109 (fwd) 125.47 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 3 GUACUcgcUUCGgcGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 62 ::::::::::::::::::::::::::.::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAU CG GAA+ GUUCCA AUUUU 63 CCCUGCGCAAGGAUGACACGCAAAAUuCGUGAAGCGUUCCAUAUUUU- 109 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21349,sp|X76389.1|SPSNRNAU S.purpuratus U6.1 gene for small nuclear RNA ----isReversed: 0 ----hitSequence: GUGUUAGCUUCGGCAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU hit 73 : 1447 1553 (fwd) 129.94 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UUCG :::ACAUCU+ UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 1447 GUGUUagcUUCGgcAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 1506 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 1507 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU 1553 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21434,sp|X76546.1|SPU62SNR S.purpuratus U6.2 gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUGUUAGCUUCGGCAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU hit 74 : 281 387 (fwd) 129.94 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UUCG :::ACAUCU+ UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 281 GUGUUagcUUCGgcAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 340 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 341 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU 387 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #22459,sp|X57046.1|TBTRNA3 Trypanosoma brucei tRNA-tyr, tRNA-thr & U6 snRNA genes ----isReversed: 0 ----hitSequence: GCCCUUCGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 75 : 441 536 (fwd) 86.61 bits <<<<<____>>>>>::::::::::::::::::::::.::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCCU 59 G:CC: UCG:GG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCCU 441 GCCCU-UCGGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCCU 497 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 498 GCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 536 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #22491,sp|X13017.1|TBU6RNA Trypanosoma brucei U6 small nuclear RNA gene ----isReversed: 0 ----hitSequence: GCCCUUCGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 76 : 157 252 (fwd) 86.61 bits <<<<<____>>>>>::::::::::::::::::::::.::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCCU 59 G:CC: UCG:GG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCCU 157 GCCCU-UCGGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCCU 213 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 214 GCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 252 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #22507,sp|M25778.1|TBURNAD Trypanosoma small nuclear RNA (uRNA D) gene. ----isReversed: 0 ----hitSequence: GCCCUUCGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 77 : 104 199 (fwd) 86.61 bits <<<<<____>>>>>::::::::::::::::::::::.::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCCU 59 G:CC: UCG:GG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCCU 104 GCCCU-UCGGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCCU 160 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 161 GCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24876,sp|X53789.1|TTRU6SNR T.tridentatus U6 snRNA genes (1 & 2) for U6 small nuclear RNAs (partial) ----isReversed: 0 ----hitSequence: AAAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 78 : 1 80 (fwd) 77.95 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 AAUUG AACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 -------------------A---AAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 38 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 39 CGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 80 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24887,sp|X63790.1|TTSNRU62 T.thermophila gene for snRNA U6-2 ----isReversed: 0 ----hitSequence: GCCCGAAAGGGCAUCUGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU hit 79 : 28 129 (fwd) 109.67 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G:CC GG:CAUCUG UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 28 GCCCG-AA-AGGGCAUCUGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 85 :::.::::::::::::::::::.::::::::::::::::::::: 61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU 86 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 129 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24888,sp|X63791.1|TTSNRU63 T.thermophila genes for snRNA U6-3, snRNA U6-4 ----isReversed: 0 ----hitSequence: CCCGAAAGGGUCCUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU hit 80 : 1 102 (fwd) 102.36 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 CCC GGG+C UC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 --CCCGAAAGGGUCCUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 58 :::.::::::::::::::::::.::::::::::::::::::::: 61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU 59 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 102 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24929,sp|X58843.1|TTU61 T.thermophila U6.1 snRNA ----isReversed: 0 ----hitSequence: AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU hit 81 : 3 106 (fwd) 111.18 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 ::CCC GGG::AUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 3 AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 62 :::.::::::::::::::::::.::::::::::::::::::::: 61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU 63 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #2599,sp|AB054536.1|AB054536 Pan troglodytes LTB, TNF alpha, LTA, IKBL, ATP6G, BAT1, Patr-MIC and Patr-B genes, complete cds. ----isReversed: 1 ----hitSequence: GUACUCGCUUUGGCAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGCCCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA hit 82 : 124607 124501 (rev) 91.49 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+ UAAAAU GGAA GAUACAGAGAAGAU AGCA GGC 51678 GUACUcgcUUUGgcAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGC 51737 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU C CAAGG UGACA+GCA+A+UC GAA+ +UUCCA AUUUU 51738 CCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA 51784 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #3498,sp|AB064998.1|AB064998 Macaca fascicularis BBH mRNA for gamma butyrobetaine hydroxylase, complete cds. ----isReversed: 0 ----hitSequence: AUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 83 : 1 86 (fwd) 94.30 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 +U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 ----------------AUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 44 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 45 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 86 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #3822,sp|AB071055.1|AB071055 Macaca fascicularis testis cDNA clone:QtsA-14588, full insert sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACACAGACCAAAACAGGAGUGACACUGAGAAGAUUAGCGUGGCCCUGCACAAGGAUGACACACAAAUUCAUGAAGCGUUCCAUAUUUUG hit 84 : 1367 1472 (fwd) 66.71 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACA + +C AAAA GGA GA AC GAGAAGAUUAGC UGG 1367 GUGCUcgcUUCAgcAGCACACAGACCAAAACAGGAGUGACACUGAGAAGAUUAGCGUGG- 1425 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACAC CA+A+UC GAA+ GUUCCA AUUUU 1426 CCCUGCACAAGGAUGACACACAAAUUCAUGAAGCGUUCCAUAUUUUG 1472 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #5706,sp|AB100082.1|AB100082 Pan troglodytes DNA, major histocompatibility complex class I region, section 1/6. ----isReversed: 1 ----hitSequence: GUACUCGCUUUGGCAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGCCCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA hit 85 : 124607 124501 (rev) 91.49 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+ UAAAAU GGAA GAUACAGAGAAGAU AGCA GGC 175444 GUACUcgcUUUGgcAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGC 175503 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU C CAAGG UGACA+GCA+A+UC GAA+ +UUCCA AUUUU 175504 CCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA 175550 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7027,sp|AC087806.3|AC087806 Papio cynocephalus anubis clone RP41-187H19, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUA hit 86 : 115795 115692 (rev) 116.48 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 50716 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 50775 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA U U 50776 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCA---UAUA 50819 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7118,sp|AC092859.26|AC092859 Pan troglodytes clone rp43-111m15, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGGUAGCACAUGUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGUCCCCGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 87 : 93894 94000 (fwd) 120.65 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCA GG 93894 GUGCUugcUUUGguAGCACAUGUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGU 93953 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC GCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 93954 CCCCGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 94000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7119,sp|AC092874.2|AC092874 Sus scrofa clone RP44-326F1, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAACCAAAUUCGUUUUUUUUGUUGUU hit 88 : 42084 41986 (rev) 79.59 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGA GAUUAGCAUGGC 122321 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGA---GAUUAGCAUGGC 122377 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA CA+A+UCG +UU +UU UU 122378 CCCUGCGCAAGGAUGACAACCAAAUUCGU-----UUUUUUUGUUGUU 122419 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7160,sp|AC098645.3|AC098645 Papio anubis clone RP41-470J23, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCUGCUUGGCAGCACAUAUGCAAAAAUAGGAAAGAUACAGAGAAGAUUAUCAUGGCCCUUAUGCAAGGAUGACACACACAUUUAUGAAGCAUUUUAUAUUUUU hit 89 : 98670 98564 (rev) 81.08 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+UGC AAAAU GGAA GAUACAGAGAAGAUUA CAUGGC 94648 GUGCUcugcUUGGcAGCACAUAUGCAAAAAUAGGAAAGAUACAGAGAAGAUUAUCAUGGC 94707 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC U GCAAGGAUGACAC CA A+U GAA+ +UU A AUUUUU 94708 CCUUAUGCAAGGAUGACACACACAUUUAUGAAGCAUUUUAUAUUUUU 94754 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7196,sp|AC118584.17|AC118584 Papio anubis clone rp41-78d16, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCCCUUUGGCGGCACAUAUGCUAAAAUUGGAAUGAUACAGAGAAAAUUAGCAUGGCGUCUGAACAAGAAUGACACACAAAUUCAUGAAGCAUUCCAUAUAUAA hit 90 : 1606 1500 (rev) 75.60 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+UGCUAAAAUUGGAA GAUACAGAGAA AUUAGCAUGGC 187999 GUGCUcccUUUGgcGGCACAUAUGCUAAAAUUGGAAUGAUACAGAGAAAAUUAGCAUGGC 188058 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUG CAAG AUGACAC CA+A+UC GAA+ +UUCCA AU U 188059 GUCUGAACAAGAAUGACACACAAAUUCAUGAAGCAUUCCAUAUAUAA 188105 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7269,sp|AC129961.2|AC129961 Sus scrofa, clone RP44-428N16, complete sequence. ----isReversed: 0 ----hitSequence: AUGCUGUGGUUGCUUCGGUAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUCAGCAUGCCCCCCUCCCCUCCCCCUGCACAAGGAUGACAUGCAAAUUAGUGAAGUGUUCCAUAUUUUC hit 91 : 39497 39620 (fwd) 90.81 bits <<<<<........____..>>>>>:::::::::::::::::::::::::::::::::::: 1 GucCc........UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGC 50 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAGAU AGC 39497 AUGCUgugguugcUUCGguAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUCAGC 39556 :::............::::::::::::::::::::::::::::::::::::::::::::: 51 AUG............GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaU 98 AUG CCCCUGC CAAGGAUGACA+GCA+A+U G GAA+UGUUCCA AU 39557 AUGccccccuccccuCCCCCUGCACAAGGAUGACAUGCAAAUUAGUGAAGUGUUCCAUAU 39616 :::: 99 UUUU 102 UUU 39617 UUUC 39620 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7277,sp|AC136964.2|AC136964 Sus scrofa domestica clone RP44-154L9, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACCUAUAUUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGCGAAGCGUUCCAUAUUUUU hit 92 : 84202 84308 (fwd) 114.04 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:AC U+U+ UAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 84202 GUGCUcgcUUUGgcAGCACCUAUAUUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 84261 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+U G GAA+ GUUCCA AUUUUU 84262 CCCUGUGCAAGGAUGACACACAAAUUUGCGAAGCGUUCCAUAUUUUU 84308 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7278,sp|AC136966.2|AC136966 Bos taurus clone RP42-221D7, complete sequence. ----isReversed: 0 ----hitSequence: GCGCUCACUUCAGCAGCACAUAUACUAAAUACAGAUAUGAUACAAAGAAGAUUGGCGUGGCCCCUGUGCAAGGAUUACAUGCAAAUUUGUGAAGCUUUCCAUAUUUUU hit 93 : 109704 109811 (fwd) 68.43 bits <<<<<...____..>>>>>::::::::::::...:::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAU...UGGAACgAUACAGAGAAGAUUAGCAU 52 G::C: UUC :G::CAU+U+CUAAA G A GAUACA AGAAGAUU GC U 109704 GCGCUcacUUCAgcAGCACAUAUACUAAAU-aca-GAUAUGAUACAAAGAAGAUUGGCGU 109761 :::::::::::::::::::::::::::::::::::::::::::::::::: 53 GGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GGCCCCUG GCAAGGAU ACA+GCA+A+U G GAA+ +UUCCA AUUUUU 109762 GGCCCCUGUGCAAGGAUUACAUGCAAAUUUGUGAAGCUUUCCAUAUUUUU 109811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7292,sp|AC140951.1|AC140951 Pan troglodytes BAC clone RP43-60K3 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GUGCAUGCUUCGGUAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUCAGCAUGGCCCCUGCACAAAGAUGACAUGCAAAUUUGUGUUGCGUUCCAUAUUUGCUU hit 94 : 62387 62495 (fwd) 99.03 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C UUCG G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAU AGCAUGGC 62387 GUGCAugcUUCGguAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUCAGCAUGGC 62446 :::::::::::::::::::::::::::::::::::::::::::::..:: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUU..UU 102 CCCUGC CAA GAUGACA+GCA+A+U G G + GUUCCA AUUU UU 62447 CCCUGCACAAAGAUGACAUGCAAAUUUGUGUUGCGUUCCAUAUUUgcUU 62495 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7294,sp|AC140953.1|AC140953 Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence. ----isReversed: 1 ----hitSequence: UUUGCUUCAGCAACAUGUAUACUAAAAUUGGAAUGAUAUAGAGAAGAUAAGCAUGGCCCCUGCACAAGGAUGACACACAAAUUCAUGAAGCGUCCCAUAUUUUA hit 95 : 186532 186429 (rev) 87.92 bits <<<<<____>>>>>::::::..:::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgc..UAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 :U: CUUC G :A:AU U+ UAAAAUUGGAA GAUA AGAGAAGAU AGCAUGGCCCC 18282 UUUGCUUCAGCAACAUGUAUacUAAAAUUGGAAUGAUAUAGAGAAGAUAAGCAUGGCCCC 18341 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGC CAAGGAUGACAC CA+A+UC GAA+ GU CCA AUUUU 18342 UGCACAAGGAUGACACACAAAUUCAUGAAGCGUCCCAUAUUUUA 18385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7301,sp|AC142288.1|AC142288 Pan troglodytes chromosome 7 clone RP43-178D12, complete sequence. ----isReversed: 0 ----hitSequence: GUUGCUUUGGCAGCAUAUAAACUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCUUGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU hit 96 : 142463 142566 (fwd) 86.71 bits <<<<<____>>>>>::::::..:::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgc..UAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 G : CUU GG : CAU+U+ UAAAAUUGGAAC AUACAGAGAAGAUUA CAUGGC C 142463 GUUGCUUUGGCAGCAUAUAAacUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCU 142522 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UG GCAAGGAUGACA+GCA+A+UC GAAA +UU A AUUUUU 142523 UGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU 142566 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7303,sp|AC142290.1|AC142290 Pan troglodytes chromosome 7 clone RP43-180M6, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCAUUUUGGCAGUACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCUCUGAGCAAGGAUGACAUGCAAAUUCAUGAAGUAUUCCAUAUA hit 97 : 180346 180243 (rev) 92.25 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 53700 GUGCUcauUUUGgcAGUACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 53759 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUG GCAAGGAUGACA+GCA+A+UC GAA+U+UUCCA U U 53760 CUCUGAGCAAGGAUGACAUGCAAAUUCAUGAAGUAUUCCA---UAUA 53803 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7312,sp|AC142300.1|AC142300 Pan troglodytes chromosome 7 clone RP43-127J18, complete sequence. ----isReversed: 0 ----hitSequence: UUGCUUCAGCAGCAAGUGUACUAAAAUUAAAACAAUAUAGAGAAGAUUAGCAUGAUCCCUGCACAAGUAUGACACACAAAUUUGCGAAGCAUUCUAUUUUUUU hit 98 : 41511 41613 (fwd) 76.73 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U:C:U G :G:A: U U+CUAAAAUU AAC+AUA AGAGAAGAUUAGCAUG CCCU 41511 UUGCUUCAGcAGCAAGUGUACUAAAAUUAAAACAAUAUAGAGAAGAUUAGCAUGAUCCCU 41570 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GC CAAG AUGACAC CA+A+U G GAA+ +UUC A UUUUU 41571 GCACAAGUAUGACACACAAAUUUGCGAAGCAUUCUAUUUUUUU 41613 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7383,sp|AC144780.1|AC144780 Pan troglodytes chromosome 7 clone RP43-2J12, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGACAGCACAUAUACUAAAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUUA hit 99 : 174380 174484 (fwd) 93.31 bits <<<<<...____..>>>>>:::::::..:::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU..AAAAUUGGAACgAUACAGAGAAGAUUAGCAUG 53 GU:C: UU G :G:ACAU+U+CU AAAAUUGGAA GAUACAGAGAAGAUUAGCAUG 174380 GUGCUugcUUUGacAGCACAUAUACUaaAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUG 174439 ::::::::::::::::::::::::::::::::::::::::::::::::: 54 GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCCCCUG GCAAGGAUGACA+GCA+A+UC GAA+ +UUCC UU 174440 GCCCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCC----AUUA 174484 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7390,sp|AC145475.1|AC145475 Pan troglodytes chromosome 7 clone RP43-34K7, complete sequence. ----isReversed: 1 ----hitSequence: GUUGCUUUGGCAGCAUAUAAACUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCUUGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU hit 100 : 118930 118827 (rev) 86.71 bits <<<<<____>>>>>::::::..:::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgc..UAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 G : CUU GG : CAU+U+ UAAAAUUGGAAC AUACAGAGAAGAUUA CAUGGC C 17985 GUUGCUUUGGCAGCAUAUAAacUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCU 18044 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UG GCAAGGAUGACA+GCA+A+UC GAAA +UU A AUUUUU 18045 UGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU 18088 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #398,sp|AB010266.1|AB010266 Mus musculus Creb-rp, Tnx and Cyp21 genes for cAMP response element binding protein-related protein, tenascin-X and steroid 21- ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 101 : 33261 33155 (rev) 130.26 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 34717 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 34776 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 34777 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 34823 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #2636,sp|AB049427.1|AB049427 Mus musculus DNA, clone:201, derived from 4x chromosome of T(X;4)37H translocation. ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCAGCCCAUAUACUAAAAUUGGAACAAUACAGAGAAGCUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAGUUCAUGAAGUGUUCCAUAUUCUU hit 102 : 884 990 (fwd) 103.55 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUC :G: CAU+U+CUAAAAUUGGAAC+AUACAGAGAAG UUAGCAUGGC 884 GUGCUcacUUCAgcAGCCCAUAUACUAAAAUUGGAACAAUACAGAGAAGCUUAGCAUGGC 943 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+ +UC GAA+UGUUCCA AUU UU 944 CCCUGUGCAAGGAUGACAUGCAAGUUCAUGAAGUGUUCCAUAUUCUU 990 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4560,sp|AC006289.1|AC006289 Mus musculus chromosome 17, clone 29_N_7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 103 : 164198 164092 (rev) 130.26 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 37789 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 37848 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 37849 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 37895 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4598,sp|AC011013.17|AC011013 Mus musculus chromosome 11, clone RP23-218N2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUACAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGAAUGACACACAAAUUCAUGAAGCGUUCCAUAUU hit 104 : 108246 108349 (fwd) 99.70 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUA AAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 108246 GUGCUugcUUCGgcAGCACAUAUACUACAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGC 108305 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAG AUGACAC CA+A+UC GAA+ GUUCCA U UU 108306 CCCUGCGCAAGAAUGACACACAAAUUCAUGAAGCGUUCCA---UAUU 108349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4610,sp|AC015584.18|AC015584 Mus musculus, clone RP23-400H17, complete sequence. ----isReversed: 0 ----hitSequence: GGGCUCACCUAAGCAGCACAUAUACUUAAACCGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACAAAAAUUCAGGAAGCCUUCAACUUGUUUUU hit 105 : 61516 61624 (fwd) 80.99 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: U G :G: CAU+U+CU AAA GGAACGAUACAGAGAAGAUUAGCAUGGC 61516 GGGCUcaccUAAGcAGCACAUAUACUUAAACCGGAACGAUACAGAGAAGAUUAGCAUGGC 61575 ::::::::::::::::::::::::::::::::::..::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU..gUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC A+A+UC GAA+ + + C +UUUUU 61576 CCCUGAGCAAGGAUGACACAAAAAUUCAGGAAGCcuUCAACUUGUUUUU 61624 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4617,sp|AC018559.31|AC018559 Mus musculus chromosome 6 clone ct7-596k8 strain 129/Sv, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAAAUUGGAACGAUACAGAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUUA hit 106 : 3931 3834 (rev) 82.19 bits <<<<<...____..>>>>>:::::::..:::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU..AAAAUUGGAACgAUACAGAGAAGAUUAGCAUG 53 GU:C: UUC :G:ACAU+U+CU AAAAUUGGAACGAUACAGA GAUUAGCAUG 107845 GUGCUcgcUUCAgcAGCACAUAUACUaaAAAAUUGGAACGAUACAGA---GAUUAGCAUG 107901 ::::::::::::::::::::::::::::::::::::::::::::::::: 54 GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCCCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ G UUU 107902 GCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCG--------UUUA 107942 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4654,sp|AC024950.3|AC024950 Mus musculus chromosome 6 clone RP23-208N9 strain C57BL6/J, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 107 : 41292 41398 (fwd) 130.26 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 41292 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 41351 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 41352 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 41398 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4666,sp|AC026682.14|AC026682 Mus musculus 11 BAC RP23-201K2 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGACCCUUGCGCAAGGAUGACACGCAAAUUCCUGAAGUGUUCCAUAUUUUU hit 108 : 120870 120764 (rev) 117.32 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUG C 81786 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGAC 81845 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGCGCAAGGAUGACACGCA+A+UC GAA+UGUUCCA AUUUUU 81846 CCUUGCGCAAGGAUGACACGCAAAUUCCUGAAGUGUUCCAUAUUUUU 81892 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4724,sp|AC069308.21|AC069308 Mus musculus Strain C57BL6/J Chromosome 8 RP23-21B7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUCCGUGAAGCGUUCCAUAAUUUU hit 109 : 24848 24742 (rev) 127.36 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 214974 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 215033 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+ CG GAA+ GUUCCA A UUUU 215034 CCCUGCACAAGGAUGACACGCAAAUCCGUGAAGCGUUCCAUAAUUUU 215080 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4823,sp|AC083817.19|AC083817 Mus musculus 1 BAC RP23-470G12 (Roswell Park Cancer Institute Mouse BAC) complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 110 : 47359 47253 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 157592 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 157651 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 157652 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 157698 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4845,sp|AC084162.3|AC084162 Mus musculus chromosome 5 clone RP23-11P12 strain C57BL6/J, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU hit 111 : 76481 76587 (fwd) 127.62 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 76481 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 76540 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UC GAA+ GUUCCA AUUUUU 76541 CCCUGCACAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU 76587 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4849,sp|AC084272.41|AC084272 Mus musculus clone rp23-11g21 map 3 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: AUACUCGCUCCAGCAGCACAUAUACUAAAACUGGAACAAUAUAGAGAAGAUUAGCAUGGCCCCUGUGCAAAGAUCACACUCAAAUUCAUGAAGAGUUCCAUAUUUUU hit 112 : 101765 101871 (fwd) 86.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U C: U C :G A:AU+U+CUAAAA UGGAAC+AUA AGAGAAGAUUAGCAUGGC 101765 AUACUcgcUCCAgcAGCACAUAUACUAAAACUGGAACAAUAUAGAGAAGAUUAGCAUGGC 101824 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAA GAU ACAC CA+A+UC GAA+ GUUCCA AUUUUU 101825 CCCUGUGCAAAGAUCACACUCAAAUUCAUGAAGAGUUCCAUAUUUUU 101871 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4877,sp|AC087040.6|AC087040 Mus musculus 1 BAC RP23-269M3 (RPCI Mouse BAC) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 113 : 38403 38509 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 38403 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 38462 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 38463 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 38509 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4884,sp|AC087114.7|AC087114 Mus musculus Strain C57BL6/J Chromosome 10 RP23-309M23, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG hit 114 : 65498 65604 (fwd) 128.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 65498 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 65557 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUU 65558 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG 65604 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4884,sp|AC087114.7|AC087114 Mus musculus Strain C57BL6/J Chromosome 10 RP23-309M23, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG hit 115 : 141809 141915 (fwd) 128.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 141809 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 141868 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUU 141869 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG 141915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4887,sp|AC087117.9|AC087117 Mus Musculus Strain C57BL6/J chromosome 17 BAC, RP23-349B4, Complete Sequence, complete sequence. ----isReversed: 0 ----hitSequence: GAGCUCUCUUCAGUAGCACUCACACUAAAAUUGGAAAGAUACAGAGAUUAGCAUGGCCCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU hit 116 : 157835 157938 (fwd) 80.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUC :G: C +++CUAAAAUUGGAA GAUACAGA GAUUAGCAUGGC 157835 GAGCUcucUUCAguAGCACUCACACUAAAAUUGGAAAGAUACAGA---GAUUAGCAUGGC 157891 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUG CACGCA+A+U G A++ +UUCCA AUUUUU 157892 CCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU 157938 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4920,sp|AC087891.12|AC087891 Mus musculus Strain C57BL6/J Chromosome 10 RP23-440N1, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 117 : 72282 72176 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 122771 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 122830 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 122831 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 122877 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4938,sp|AC090495.5|AC090495 Genomic sequence for Mus musculus, clone RP23-60B7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAACACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAACUCGUGAAGCGUUCCAUAUUUUU hit 118 : 64287 64181 (rev) 126.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 18114 GUGCUcgcUUCGgcAACACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 18173 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A UCG GAA+ GUUCCA AUUUUU 18174 CCCUGCGCAAGGAUGACACGCAAACUCGUGAAGCGUUCCAUAUUUUU 18220 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4945,sp|AC090652.32|AC090652 Mus musculus chromosome 7 clone rp23-116a10 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: GUGUUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 119 : 41935 42041 (fwd) 130.13 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UUCG :::ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 41935 GUGUUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 41994 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 41995 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 42041 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4947,sp|AC090654.38|AC090654 Mus musculus clone rp23-329p1 map 14 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUUGUGAAGCAUUCGAAA hit 120 : 99838 99939 (fwd) 101.00 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99838 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99897 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+U G GAA+ +UUC AAA 99898 CCCUGCGCAAGGAUGACACACAAAUUUGUGAAGCAUUCGAAA----- 99939 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4969,sp|AC091452.1|AC091452 Mus musculus chromosome X clone RP21-124C16, complete sequence. ----isReversed: 0 ----hitSequence: AUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGAAUAACAUGCAAACUCGUGAAGCAUUCCAUACUUUC hit 121 : 133599 133705 (fwd) 105.11 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUC :G:A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 133599 AUGCUugcUUCAgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 133658 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAG AU ACA+GCA+A UCG GAA+ +UUCCA A UUU 133659 CCCUGCACAAGAAUAACAUGCAAACUCGUGAAGCAUUCCAUACUUUC 133705 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4977,sp|AC091521.19|AC091521 Mus musculus chromosome 1 clone rp23-145f9, complete sequence. ----isReversed: 1 ----hitSequence: AUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCGUGAAGCAUUCCAUAUUUCU hit 122 : 118741 118635 (rev) 117.22 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 80044 AUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 80103 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UCG GAA+ +UUCCA AUUU U 80104 CCCUGUGCAAGGAUGACAUGCAAAUUCGUGAAGCAUUCCAUAUUUCU 80150 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5052,sp|AC097354.11|AC097354 Mus musculus clone ct7-297f7 strain 129/Sv, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 123 : 112355 112461 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 112355 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 112414 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 112415 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 112461 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5052,sp|AC097354.11|AC097354 Mus musculus clone ct7-297f7 strain 129/Sv, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAUUAGCAUGACCCCAGAACAAGGAUGCUAUGCAGAUUCAUAAAGCGUUCCAUAAUUUU hit 124 : 157134 157237 (fwd) 66.58 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUU GAA GAUACAGA GAUUAGCAUG C 157134 GUGCUcacUUCAgcAGCACAUAUACUAAAAUUAGAAUGAUACAGA---GAUUAGCAUGAC 157190 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC G CAAGGAUG A+GCA A+UC AA+ GUUCCA A UUUU 157191 CCCAGAACAAGGAUGCUAUGCAGAUUCAUAAAGCGUUCCAUAAUUUU 157237 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5055,sp|AC098567.4|AC098567 Genomic sequence for Mus musculus, clone RP23-198E6, from chromosome 17, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCUCUUCAGCAACACAUAUACUAAAAUUGGAAAGAUACAGAGAAUAUUAGCAUGGCCUCUGUGCAAGGAUGAAAUGCAAAUUCGUGAAGCUUUCCAUAUUUUU hit 125 : 164318 164212 (rev) 102.24 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUC : :ACAU+U+CUAAAAUUGGAA GAUACAGAGAA AUUAGCAUGGC 20960 GUGCUcucUUCAgcAACACAUAUACUAAAAUUGGAAAGAUACAGAGAAUAUUAGCAUGGC 21019 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUG GCAAGGAUGA A+GCA+A+UCG GAA+ +UUCCA AUUUUU 21020 CUCUGUGCAAGGAUGAAAUGCAAAUUCGUGAAGCUUUCCAUAUUUUU 21066 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5104,sp|AC098875.3|AC098875 Mus musculus clone RP23-1E10, complete sequence. ----isReversed: 0 ----hitSequence: AUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAUAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 126 : 198138 198244 (fwd) 125.05 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAACGAUACA AGAAGAUUAGCAUGGC 198138 AUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAUAGAAGAUUAGCAUGGC 198197 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 198198 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 198244 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5152,sp|AC100746.4|AC100746 Mus musculus, clone RP24-399G21, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU hit 127 : 65133 65027 (rev) 128.40 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UUCG :G:A AU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 92550 GUGCUugcUUCGgcAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 92609 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UCG GAA+UGUUCCA AUUUUU 92610 CCCUGCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU 92656 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5184,sp|AC101931.8|AC101931 Mus musculus, clone RP24-63O23, complete sequence. ----isReversed: 0 ----hitSequence: GGCCAAUAUGAUGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGUAUGGCCCUUGCGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU hit 128 : 77587 77690 (fwd) 110.19 bits <<<<<.____.>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCc.UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 G C: U G :G CAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAG AUGGCCC 77587 GGCCAaUAUGaUGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGUAUGGCCCU 77646 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGCA+A+U G GAA+UGUUCCA AUUUUU 77647 UGCGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU 77690 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5213,sp|AC102527.6|AC102527 Mus musculus, clone RP23-29G4, complete sequence. ----isReversed: 0 ----hitSequence: UUGCUUCUGCAGCACAUAUACUAAAAUUGGAAGGAUACAGAGUAGAUUAGCAUGGCCCCUGCGCAAAGGAUGCAAAUUCGUGAAGUGUUCCAUAAAAAU hit 129 : 174936 175034 (fwd) 72.25 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U:C:U G :G:A:AU+U+CUAAAAUUGGAA GAUACAGAG AGAUUAGCAUGGCCCCU 174936 UUGCUUCUGcAGCACAUAUACUAAAAUUGGAAGGAUACAGAGUAGAUUAGCAUGGCCCCU 174995 ::::::.::::::::::::::::::::::::::::::::::::: 60 GCGCAA.GGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCGCAA GGAUG CA+A+UCG GAA+UGUUCCA A U 174996 GCGCAAaGGAUG-----CAAAUUCGUGAAGUGUUCCAUAAAAAU 175034 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5245,sp|AC104099.5|AC104099 Mus musculus clone RP24-372J8, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAAAGAAGAUGAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUU hit 130 : 97806 97703 (rev) 95.68 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACA AGAAGAU AGCAUGGC 50454 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAAAGAAGAUGAGCAUGGC 50513 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA U UU 50514 CCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCA---UAUU 50557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5256,sp|AC104327.5|AC104327 Mus musculus chromosome 3 clone rp23-295a4 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAACACAUAUACUAAAAUUGGAACAAUACAGAAAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 131 : 207763 207869 (fwd) 122.93 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGAAC+AUACAGA AAGAUUAGCAUGGC 207763 GUGCUcgcUUCGgcAACACAUAUACUAAAAUUGGAACAAUACAGAAAAGAUUAGCAUGGC 207822 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 207823 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 207869 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5260,sp|AC104518.5|AC104518 Mus Musculus Strain 129S6/SvEvTac chromosome 17 BAC, RP22-187D17, Complete Sequence, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU hit 132 : 153579 153473 (rev) 124.79 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 9789 GUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 9848 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA AUUUUU 9849 CCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU 9895 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5263,sp|AC104832.8|AC104832 Mus Musculus Strain C57BL6/J Chromosome 12 BAC, RP23-38P6, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 133 : 48102 48208 (fwd) 133.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 48102 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 48161 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 48162 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 48208 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5290,sp|AC105950.11|AC105950 Mus musculus, clone RP24-386J17, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 134 : 116604 116710 (fwd) 133.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 116604 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 116663 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 116664 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 116710 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5315,sp|AC108435.5|AC108435 Mus musculus, clone RP23-229O20, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCAGCAGCACAUAUACCAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAAAAUUGGAAAUAUAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGAUACACAAAUUUGUGAAGUGUUUCAUUUUUUU hit 135 : 181163 181027 (rev) 75.86 bits <<<<<...____..>>>>>::::::..................................: 1 GucCc...UUCG..gGgaCAUcUgc..................................U 21 GU:C: UUC :G:ACAU+U+C 22119 GUGCUcacUUCAgcAGCACAUAUACcaaaaaaaaaaaaaaaaaaaagaaagaaaaagaaA 22178 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 22 AAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGcauAaU 81 AAAAUUGGAA AUA GAAGAUUAGCAUGGCCCCUGC CAAGGAUGA AC CA+A+U 22179 AAAAUUGGAAAUAUA----GAAGAUUAGCAUGGCCCCUGCACAAGGAUGAUACACAAAUU 22234 ::::::::::::::::::::: 82 CGAGAaaUgUUCCaaaUUUUU 102 G GAA+UGUU CA UUUUU 22235 UGUGAAGUGUUUCAUUUUUUU 22255 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5339,sp|AC109280.9|AC109280 Mus musculus, clone RP23-400B7, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 136 : 165770 165876 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 165770 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 165829 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 165830 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 165876 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5355,sp|AC110090.6|AC110090 Mus musculus chromosome 1 clone RP23-27L4, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 137 : 93142 93248 (fwd) 134.03 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 93142 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 93201 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 93202 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 93248 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5452,sp|AC113301.7|AC113301 Mus musculus, clone RP23-430G7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUUGGUAGUACAUAUACUAAAAUCGGAACACAGAGAAUAUUAGCAUGGCCCCUGCGCAAGGAUGGCAUGCAAAUUAGUGAAGUGUUCCAUAUUUUC hit 138 : 54850 54747 (rev) 93.80 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+CUAAAAU GGAAC ACAGAGAA AUUAGCAUGGC 141136 GUGCUugcUUUGguAGUACAUAUACUAAAAUCGGAAC---ACAGAGAAUAUUAGCAUGGC 141192 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUG CA+GCA+A+U G GAA+UGUUCCA AUUUU 141193 CCCUGCGCAAGGAUGGCAUGCAAAUUAGUGAAGUGUUCCAUAUUUUC 141239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5537,sp|AC116319.4|AC116319 Mus musculus chromosome 14 clone RP23-265J2, complete sequence. ----isReversed: 1 ----hitSequence: UUGCUUUGGCUGCACAUAUACUAAAAUUAGAACGAUAUAAAGAAUAUUAUCAUGGCCCCUGCAUAAGAAUGACAUGCAAAUUAGUGAAGUGUUCUGUUA hit 139 : 123156 123058 (rev) 66.38 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U:C UU G G:A:AU+U+CUAAAAUU GAACGAUA A AGAA AUUA CAUGGCCCCU 47339 UUGCUUUGGcUGCACAUAUACUAAAAUUAGAACGAUAUAAAGAAUAUUAUCAUGGCCCCU 47398 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GC AAG AUGACA+GCA+A+U G GAA+UGUUC UU 47399 GCAUAAGAAUGACAUGCAAAUUAGUGAAGUGUUCU----GUUA 47437 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5581,sp|AC116657.3|AC116657 Mus musculus clone RP23-289E18, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGUAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 140 : 157204 157098 (rev) 133.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 27354 GUGCUcgcUUCGguAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 27413 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 27414 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 27460 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5617,sp|AC117204.3|AC117204 Mus musculus chromosome 18 clone RP23-256L23, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU hit 141 : 63673 63567 (rev) 133.91 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 119393 GUGCUcacUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 119452 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+UGUUCCA AUUUUU 119453 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU 119499 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5660,sp|AC117260.3|AC117260 Mus musculus chromosome 18 clone RP24-498G10, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAAAAGAUUAGCAUGGCCCCUGCGCAAGAAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU hit 142 : 60341 60447 (fwd) 115.26 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGA AAGAUUAGCAUGGC 60341 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAAAAGAUUAGCAUGGC 60400 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAG AUGACAC CA+A+UCG GAA+ GUUCCA AUUUUU 60401 CCCUGCGCAAGAAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU 60447 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5664,sp|AC117275.3|AC117275 Mus musculus chromosome 18 clone RP23-383F11, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCAUUUCAGCAGGACAUAUACUAAAAUUAGAAUGCUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACGAAAAUUAGUGAAGUGUUCCAUAUUUUU hit 143 : 5989 5883 (rev) 105.00 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUC :G ACAU+U+CUAAAAUU GAA G UACAGAGAAGAUUAGCAUGGC 203174 GUGCUcauUUCAgcAGGACAUAUACUAAAAUUAGAAUGCUACAGAGAAGAUUAGCAUGGC 203233 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACG A+A+U G GAA+UGUUCCA AUUUUU 203234 CCCUGAGCAAGGAUGACACGAAAAUUAGUGAAGUGUUCCAUAUUUUU 203280 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5671,sp|AC117633.6|AC117633 Mus musculus, clone RP23-200C8, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAUAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCGUAUUUUU hit 144 : 12990 12884 (rev) 118.45 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAA AUUAGCAUGGC 211232 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAUAUUAGCAUGGC 211291 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UC GAA+UGUUCC AUUUUU 211292 CCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCGUAUUUUU 211338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5716,sp|AC119816.5|AC119816 Mus musculus, clone RP23-59B8, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUAGCCCCUGCACAAGGAUGACACACAAAUUCAGAAGCAUUCCAUAUUUUU hit 145 : 149003 149108 (fwd) 114.53 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAU GC 149003 GUGCUugcUUCAgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUAGC 149062 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACAC CA+A+UC AGAA+ +UUCCA AUUUUU 149063 CCCUGCACAAGGAUGACACACAAAUUC-AGAAGCAUUCCAUAUUUUU 149108 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5716,sp|AC119816.5|AC119816 Mus musculus, clone RP23-59B8, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 146 : 161689 161795 (fwd) 133.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 161689 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 161748 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 161749 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 161795 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5747,sp|AC121575.4|AC121575 Mus musculus chromosome 1 clone RP23-241P4, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUUCUUCAGGAGCAUGUAUGCUAAAACUGGCAUGAUGUAGAGAAGAAUAGCAUGGCCCCUGCACAAGGAUGCCAUGCAAAUCUGUGAAGCAUCCGAAAUUUUU hit 147 : 172659 172765 (fwd) 67.14 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UUC :G:A U+UGCUAAAA UGG A GAU AGAGAAGA UAGCAUGGC 172659 GUGCUuucUUCAggAGCAUGUAUGCUAAAACUGGCAUGAUGUAGAGAAGAAUAGCAUGGC 172718 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUG CA+GCA+A+ G GAA+ +U C AAAUUUUU 172719 CCCUGCACAAGGAUGCCAUGCAAAUCUGUGAAGCAUCCGAAAUUUUU 172765 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5768,sp|AC121599.3|AC121599 Mus musculus chromosome 14 clone RP23-300H21, complete sequence. ----isReversed: 0 ----hitSequence: UCGCUUUGGCAGCCUAUAUACUAAAACGGGGACGAUACAGAGAAGAUUAGCAUGGCCCUUGCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAGUUUU hit 148 : 72112 72214 (fwd) 94.44 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 : :C:UU G :G: :AU+U+CUAAAA GG ACGAUACAGAGAAGAUUAGCAUGGCCC U 72112 UCGCUUUGGcAGCCUAUAUACUAAAACGGGGACGAUACAGAGAAGAUUAGCAUGGCCCUU 72171 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GC CAAGGAUGACACGCA+A+UCG GAA+UGUUCCA A UUUU 72172 GCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAGUUUU 72214 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5775,sp|AC121608.3|AC121608 Mus musculus chromosome 9 clone RP23-317M3, complete sequence. ----isReversed: 1 ----hitSequence: CUGCUCGCUUUGGCAACAUAUAUACUAAAAUUGGAACGAUACUGACAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACAUGCAAAUUCGUGAAGCGAUCCAUAUUUUU hit 149 : 59758 59652 (rev) 105.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U: : UU G : :A AU+U+CUAAAAUUGGAACGAUAC GA AAGAUUAGCAUGGC 148063 CUGCUcgcUUUGgcAACAUAUAUACUAAAAUUGGAACGAUACUGACAAGAUUAGCAUGGC 148122 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UCG GAA+ G UCCA AUUUUU 148123 CCCUGAGCAAGGAUGACAUGCAAAUUCGUGAAGCGAUCCAUAUUUUU 148169 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5788,sp|AC121780.3|AC121780 Mus musculus chromosome 5 clone RP23-360J14, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGAAGCACAUAUACUAAAAUUGGAACGACACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU hit 150 : 116442 116336 (rev) 132.47 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGA ACAGAGAAGAUUAGCAUGGC 100699 GUGCUcgcUUCGgaAGCACAUAUACUAAAAUUGGAACGACACAGAGAAGAUUAGCAUGGC 100758 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+U G GAA+UGUUCCA AUUUUU 100759 CCCUGCGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU 100805 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5819,sp|AC121819.3|AC121819 Mus musculus chromosome 8 clone RP23-460F21, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACGCGCAAAUUUGUGAAGCGUUCCAUAUUUUU hit 151 : 31517 31411 (rev) 123.42 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 162593 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 162652 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGAC CGCA+A+U G GAA+ GUUCCA AUUUUU 162653 CCCUGUGCAAGGAUGACGCGCAAAUUUGUGAAGCGUUCCAUAUUUUU 162699 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5830,sp|AC121833.3|AC121833 Mus musculus chromosome 3 clone RP24-69C16, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 152 : 162480 162586 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 162480 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 162539 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 162540 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 162586 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5830,sp|AC121833.3|AC121833 Mus musculus chromosome 3 clone RP24-69C16, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGCUACAGAGAUUAGCAUGGCCCCUGCACAAGGGUGACACACAAAUUCCUGAAGCGUUCCAUAUUUUU hit 153 : 180843 180740 (rev) 92.19 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA G UACAGA GAUUAGCAUGGC 43614 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAAUGCUACAGA---GAUUAGCAUGGC 43670 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGG UGACAC CA+A+UC GAA+ GUUCCA AUUUUU 43671 CCCUGCACAAGGGUGACACACAAAUUCCUGAAGCGUUCCAUAUUUUU 43717 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5852,sp|AC121861.3|AC121861 Mus musculus chromosome 1 clone RP24-108P23, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUGGCUUCGGCAGCACAUAUAUACUAAAAUUGGAACUAUACAGAGAAGGUUAGCAUGGCCCCUGUGCAAGGAUGGCAUGCAAAUUUGUGAACUGUUCCAUAAUUUU hit 154 : 8750 8858 (fwd) 104.43 bits <<<<<...____..>>>>>::::::..::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgc..UAAAAUUGGAACgAUACAGAGAAGAUUAGCAUG 53 GU:C: UUCG :G:ACAU+U+ UAAAAUUGGAAC AUACAGAGAAG UUAGCAUG 8750 GUGCUggcUUCGgcAGCACAUAUAUacUAAAAUUGGAACUAUACAGAGAAGGUUAGCAUG 8809 ::::::::::::::::::::::::::::::::::::::::::::::::: 54 GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCCCCUG GCAAGGAUG CA+GCA+A+U G GAA UGUUCCA A UUUU 8810 GCCCCUGUGCAAGGAUGGCAUGCAAAUUUGUGAACUGUUCCAUAAUUUU 8858 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5861,sp|AC121870.2|AC121870 Mus musculus chromosome 9 clone RP24-121D5, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUU hit 155 : 157699 157593 (rev) 124.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 34049 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 34108 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UC GAA+UGUUCCA AUUUUU 34109 CCCUGUGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUU 34155 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5880,sp|AC121893.3|AC121893 Mus musculus chromosome 16 clone RP24-157C12, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCGGCAGUACAUAUACUAAAAUUGGAACUAUACAGAGAAGAUUAGCAUGGCCCCUGAACAAGGAUGACACGCAUAUUCGUGAAGUGUUCCAUAUUUUU hit 156 : 22954 23060 (fwd) 123.18 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUCG :G ACAU+U+CUAAAAUUGGAAC AUACAGAGAAGAUUAGCAUGGC 22954 GUGCUcacUUCGgcAGUACAUAUACUAAAAUUGGAACUAUACAGAGAAGAUUAGCAUGGC 23013 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG CAAGGAUGACACGCAUA+UCG GAA+UGUUCCA AUUUUU 23014 CCCUGAACAAGGAUGACACGCAUAUUCGUGAAGUGUUCCAUAUUUUU 23060 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5903,sp|AC121917.2|AC121917 Mus musculus chromosome 5 clone RP24-194F23, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCCCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACUCAAAUUCGUGAAGCGUUCCAUUUUUUU hit 157 : 67667 67564 (rev) 106.13 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGA GAUUAGCAUGGC 110447 GUGCUcccUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGA---GAUUAGCAUGGC 110503 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA UUUUU 110504 CCCUGUGCAAGGAUGACACUCAAAUUCGUGAAGCGUUCCAUUUUUUU 110550 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5932,sp|AC121949.3|AC121949 Mus musculus chromosome 18 clone RP24-215I11, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAUAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCGUAUUUUU hit 158 : 81706 81812 (fwd) 118.45 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAA AUUAGCAUGGC 81706 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAUAUUAGCAUGGC 81765 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UC GAA+UGUUCC AUUUUU 81766 CCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCGUAUUUUU 81812 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5948,sp|AC121969.3|AC121969 Mus musculus chromosome 3 clone RP24-273J2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 159 : 22211 22317 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 22211 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 22270 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 22271 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 22317 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5965,sp|AC121989.2|AC121989 Mus musculus clone RP24-298C8, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUGUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCCCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 160 : 60277 60383 (fwd) 125.93 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 60277 GUGCUcgcUUCGgcAGCACAUGUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 60336 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 60337 CCCUGCCCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 60383 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5981,sp|AC122010.3|AC122010 Mus musculus chromosome 8 clone RP24-349I15, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCUACAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUUCACAAGGAAAUUUGUGAAGCGUUCCAUAUUUUU hit 161 : 21204 21107 (rev) 87.13 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 176915 GUGCUcgcUUCUacAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 176974 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU C CAAGGA +A+U G GAA+ GUUCCA AUUUUU 176975 CCCUUCACAAGGA---------AAUUUGUGAAGCGUUCCAUAUUUUU 177012 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6030,sp|AC122187.3|AC122187 Mus musculus chromosome 1 clone RP23-21P2, complete sequence. ----isReversed: 0 ----hitSequence: GUCCUCGCUUCGGCAGCACGUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCUUGGCCCCUGCACAAGGAUGACACGCAAAUUCAUGACACAUUCCAUAUUUUU hit 162 : 117113 117219 (fwd) 109.52 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUCG :G AC U+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGC UGGC 117113 GUCCUcgcUUCGgcAGCACGUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCUUGGC 117172 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UC GA A +UUCCA AUUUUU 117173 CCCUGCACAAGGAUGACACGCAAAUUCAUGACACAUUCCAUAUUUUU 117219 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6052,sp|AC122232.3|AC122232 Mus musculus chromosome 7 clone RP23-136G1, complete sequence. ----isReversed: 1 ----hitSequence: UUGCUUGCUUCGUCAGCACAUAGACUAAAAUUGGAACAAUACAGAGAAAAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUCU hit 163 : 39049 38943 (rev) 107.05 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+ +CUAAAAUUGGAAC+AUACAGAGAA AUUAGCAUGGC 143224 UUGCUugcUUCGucAGCACAUAGACUAAAAUUGGAACAAUACAGAGAAAAUUAGCAUGGC 143283 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UC GAA+ GUUCCA AUUU U 143284 CCCUGCACAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUCU 143330 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6066,sp|AC122256.3|AC122256 Mus musculus chromosome 7 clone RP23-178H7, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 164 : 54548 54654 (fwd) 133.32 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 54548 GUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 54607 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ GUUCCA AUUUUU 54608 CCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU 54654 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6080,sp|AC122276.4|AC122276 Mus musculus chromosome 6 clone RP23-230D23, complete sequence. ----isReversed: 1 ----hitSequence: AUACUCGAUUCGGCAGCAUAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAUCAUGGCCCCUGCACAAGGAUGACACGCAAAUUUAUAAAGCGUUCCAAAUUGUU hit 165 : 111111 111005 (rev) 102.04 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U C: UUCG :G A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUA CAUGGC 58327 AUACUcgaUUCGgcAGCAUAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAUCAUGGC 58386 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+U AA+ GUUCCAAAUU UU 58387 CCCUGCACAAGGAUGACACGCAAAUUUAUAAAGCGUUCCAAAUUGUU 58433 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6113,sp|AC122332.4|AC122332 Mus musculus chromosome 10 clone RP23-346G14, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAAGAUUAGCAUGGCCCAUGCACAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUU hit 166 : 170503 170609 (fwd) 112.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUU GAA GAUACAGAGAAGAUUAGCAUGGC 170503 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAAGAUUAGCAUGGC 170562 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGC CAAGGAUGACACGCA+A+UC GAA+UGUUCCA AUUUUU 170563 CCAUGCACAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUU 170609 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6134,sp|AC122369.4|AC122369 Mus musculus chromosome 6 clone RP23-454D13, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUUCGUGAAGCGUUCCAUAUUUUU hit 167 : 18923 18816 (rev) 133.48 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 184675 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 184734 ::::::::::::::::::::::::::.::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAU CG GAA+ GUUCCA AUUUUU 184735 CCCUGCGCAAGGAUGACACGCAAAAUuCGUGAAGCGUUCCAUAUUUUU 184782 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6148,sp|AC122388.5|AC122388 Mus musculus chromosome 16 clone RP24-80J12, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCGAAUUCAUGAAGCGUUCCAUAUUUUU hit 168 : 72450 72344 (rev) 125.65 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 141819 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 141878 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GC +A+UC GAA+ GUUCCA AUUUUU 141879 CCCUGCGCAAGGAUGACAUGCGAAUUCAUGAAGCGUUCCAUAUUUUU 141925 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6158,sp|AC122400.4|AC122400 Mus musculus chromosome 7 clone RP24-103C10, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 169 : 115553 115447 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 50700 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 50759 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 50760 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 50806 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6199,sp|AC122471.4|AC122471 Mus musculus chromosome 2 clone RP24-322M5, complete sequence. ----isReversed: 1 ----hitSequence: CUCCCUUCCAGCACAUAUACUAAAAUUGGAAUAACACAGAGAAGAUUAGCAUGGUCUCCACACAAGGAUGUCACACAAAUUCAUGAACUGUUCCAUAUU hit 170 : 59099 59001 (rev) 69.72 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 U C UUC G A AU+U+CUAAAAUUGGAA +A ACAGAGAAGAUUAGCAUGG C C 147494 CUCCCUUCCAGCACAUAUACUAAAAUUGGAAUAACACAGAGAAGAUUAGCAUGGUCUCCA 147553 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CAAGGAUG CAC CA+A+UC GAA UGUUCCA U UU 147554 CACAAGGAUGUCACACAAAUUCAUGAACUGUUCCA---UAUU 147592 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6231,sp|AC122526.4|AC122526 Mus musculus chromosome 14 clone RP24-500M11, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAAGAUGACACACACACACACACACACACA hit 171 : 85634 85731 (fwd) 72.99 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 85634 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 85693 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAA GAUGACAC CA A +C A A A + +C 85694 CCCUGCGCAAAGAUGACACACACACAC-ACACACACACA-------- 85731 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6236,sp|AC122537.4|AC122537 Mus musculus chromosome 7 clone RP24-548A15, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUCGUGAAACGUUCCAUAUUUUU hit 172 : 54550 54656 (fwd) 131.00 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 54550 GUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 54609 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+UCG GAAA GUUCCA AUUUUU 54610 CCCUGCGCAAGGAUGACACACAAAUUCGUGAAACGUUCCAUAUUUUU 54656 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6254,sp|AC122807.3|AC122807 Mus musculus chromosome 8 clone RP23-297H3, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCAGCACAUAUACUAAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGUAGGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU hit 173 : 125692 125793 (fwd) 109.36 bits <<<<<____>.>>>>:::::::.::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGg.GgaCAUcUgcU.AAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 GU:C UCG G:ACAU+U+CU AAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCC 125692 GUGC--UCGCaGCACAUAUACUaAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCC 125749 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCG A GGAUGACAC CA+A+UCG GAA+ GUUCCA AUUUUU 125750 UGCGUAGGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU 125793 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6303,sp|AC122863.4|AC122863 Mus musculus chromosome 7 clone RP23-142A14, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUCGUGAAACGUUCCAUAUUUUU hit 174 : 220215 220321 (fwd) 131.00 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 220215 GUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 220274 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+UCG GAAA GUUCCA AUUUUU 220275 CCCUGCGCAAGGAUGACACACAAAUUCGUGAAACGUUCCAUAUUUUU 220321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6303,sp|AC122863.4|AC122863 Mus musculus chromosome 7 clone RP23-142A14, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCAGCAGCACAUAUUCUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCAAUCCAUAUUUAA hit 175 : 56560 56454 (rev) 108.12 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 170042 GUGCUugcUUCAgcAGCACAUAUUCUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 170101 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+U G GAA+ + UCCA AUUU 170102 CCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCAAUCCAUAUUUAA 170148 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6355,sp|AC123028.4|AC123028 Mus musculus chromosome 10 clone RP24-553H21, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAAGAUUAGCAUGGCCCGUGCACAAAAAUGAUAUGCAAAUUUAUGUAGCAUUUCAUGUUUUU hit 176 : 85795 85901 (fwd) 87.06 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUU GAA GAUACAGAGAAGAUUAGCAUGGC 85795 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAAGAUUAGCAUGGC 85854 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGC CAA AUGA A+GCA+A+U G A+ +UU CA +UUUUU 85855 CCGUGCACAAAAAUGAUAUGCAAAUUUAUGUAGCAUUUCAUGUUUUU 85901 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6421,sp|AC123815.3|AC123815 Mus musculus chromosome 9 clone RP24-238O19, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGAUUCAGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCAGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU hit 177 : 84931 84826 (rev) 103.55 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGG 51662 GUGCUcgaUUCAgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGG- 51720 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC G GCAAGGAUGACA+GCA+A+UC GAA+ +UUCCA AUUUUU 51721 CCCAGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU 51767 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6456,sp|AC123870.3|AC123870 Mus musculus chromosome 15 clone RP23-246A19, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGAUUCAGUAGCACAUAUACUAAAAUUGGAACGAUACCUAGAAGAUUAGCAUGGCCGCUGAGCAAGGAUGACAUGGAAAUCUGUGAAGUGUUCCAUAAUUAA hit 178 : 92153 92259 (fwd) 91.38 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGAUAC AGAAGAUUAGCAUGGC 92153 GUGCUcgaUUCAguAGCACAUAUACUAAAAUUGGAACGAUACCUAGAAGAUUAGCAUGGC 92212 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUG GCAAGGAUGACA+G A+A+ G GAA+UGUUCCA A UU 92213 CGCUGAGCAAGGAUGACAUGGAAAUCUGUGAAGUGUUCCAUAAUUAA 92259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6467,sp|AC123929.4|AC123929 Mus musculus chromosome 12 clone RP24-434E14, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUAGGCAGCACAUAUACUAAAAUUGAAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCUUUCCAUAUUUUU hit 179 : 96227 96333 (fwd) 124.51 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUG AA GAUACAGAGAAGAUUAGCAUGGC 96227 GUGCUcgcUUAGgcAGCACAUAUACUAAAAUUGAAAUGAUACAGAGAAGAUUAGCAUGGC 96286 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 96287 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCUUUCCAUAUUUUU 96333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6494,sp|AC124027.1|AC124027 Mus musculus chromosome X clone RP21-282L18, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCAGAACCACAUAUACUAAAAUUAGAAUGAUUCAUCGAAGAUUAGCAUGGCCCCUGCCCACGGAUGACAUACAAAUUUAUGAAGUAUUCCAUAUUUUU hit 180 : 4580 4474 (rev) 79.76 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUC : :ACAU+U+CUAAAAUU GAA GAU CA GAAGAUUAGCAUGGC 142855 GUGCUcacUUCAgaACCACAUAUACUAAAAUUAGAAUGAUUCAUCGAAGAUUAGCAUGGC 142914 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CA GGAUGACA+ CA+A+U GAA+U+UUCCA AUUUUU 142915 CCCUGCCCACGGAUGACAUACAAAUUUAUGAAGUAUUCCAUAUUUUU 142961 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6504,sp|AC124175.2|AC124175 Mus musculus chromosome 1 clone RP23-183N18, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 181 : 116013 116119 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 116013 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 116072 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 116073 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 116119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6549,sp|AC124372.4|AC124372 Mus musculus chromosome 16 clone RP24-556P17, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCAACAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGUAUGGCCCCUGAGCAAGGAUGCCAUGCAAAUUUGUGAAGUGUUCAAUAUUUUU hit 182 : 64799 64905 (fwd) 104.85 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UUC :G:A AU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAG AUGGC 64799 GUGCUcacUUCAacAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGUAUGGC 64858 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUG CA+GCA+A+U G GAA+UGUUC A AUUUUU 64859 CCCUGAGCAAGGAUGCCAUGCAAAUUUGUGAAGUGUUCAAUAUUUUU 64905 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6569,sp|AC124400.4|AC124400 Mus musculus chromosome 14 clone RP24-357O21, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 183 : 189709 189815 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 189709 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 189768 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 189769 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 189815 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6575,sp|AC124407.4|AC124407 Mus musculus chromosome 10 clone RP24-389C22, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGAAAAUUCGUGAAGCCUUUAAUAUU hit 184 : 20725 20622 (rev) 109.89 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 137205 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 137264 ::::::::::::::::::::::::::::::::::.::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU.gUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACG A+A+UCG GAA+ +UU U UU 137265 CCCUGCGCAAGGAUGACACGAAAAUUCGUGAAGCcUUUAA----UAUU 137308 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6708,sp|AC124686.3|AC124686 Mus musculus chromosome 10 clone RP24-422F20, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU hit 185 : 61741 61847 (fwd) 131.13 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 61741 GUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 61800 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UC GAA+ GUUCCA AUUUUU 61801 CCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU 61847 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6715,sp|AC124695.4|AC124695 Mus musculus chromosome 7 clone RP24-172H24, complete sequence. ----isReversed: 0 ----hitSequence: UUGAGUGCUUGCUUCAGCAGCACAAACUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACACGCACAUUUGUGAAGUGUUCCAUAUUUUU hit 186 : 4340 4444 (fwd) 87.75 bits <<<<<..____.>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 :U::: U G :::A: ++C AAA UGGAA GAUACAGAGAAGAUUAGCAUGGCCC 4340 UUGAGugCUUGcUUCAGCAGCAC-AAAC-UGGAAUGAUACAGAGAAGAUUAGCAUGGCCC 4397 :::::::::::::::..:::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGAC..ACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGC CAAGGAUGAC ACGCA A+U G GAA+UGUUCCA AUUUUU 4398 CUGCACAAGGAUGACacACGCACAUUUGUGAAGUGUUCCAUAUUUUU 4444 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6723,sp|AC124708.2|AC124708 Mus musculus chromosome 6 clone RP24-79O16, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACAUGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 187 : 47392 47286 (rev) 124.15 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 124247 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 124306 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACA+GCA+A+UCG GAA+ +UUCCA AUUUUU 124307 CCCUGCACAAGGAUGACAUGCAAAUUCGUGAAGCAUUCCAUAUUUUU 124353 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6727,sp|AC124713.5|AC124713 Mus musculus chromosome 8 clone RP24-116N2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUACAUAUUUUU hit 188 : 98597 98703 (fwd) 131.32 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 98597 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 98656 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUU CA AUUUUU 98657 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUACAUAUUUUU 98703 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6733,sp|AC124724.4|AC124724 Mus musculus chromosome 19 clone RP23-446L16, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGUCCCUGCGCAAGGGUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 189 : 106518 106412 (rev) 126.74 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG 73435 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGU 73494 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGG UGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 73495 CCCUGCGCAAGGGUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 73541 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6763,sp|AC125037.4|AC125037 Mus musculus chromosome 3 clone RP23-332H20, complete sequence. ----isReversed: 0 ----hitSequence: AUCCUUGUGAUCGCUUCGGCAGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGUACCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUAU hit 190 : 198087 198199 (fwd) 108.46 bits <<<<<.........____..>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc.........UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 :U C: UUCG :G A:AU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAG 198087 AUCCUugugaucgcUUCGgcAGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAG 198146 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CAUGG CCUGCGCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA AUUU U 198147 CAUGGUACCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUAU 198199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6798,sp|AC125092.4|AC125092 Mus musculus chromosome 12 clone RP24-174F18, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUUGUGAAGCGUUCCAUAUUUUU hit 191 : 48861 48967 (fwd) 126.94 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 48861 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 48920 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+U G GAA+ GUUCCA AUUUUU 48921 CCCUGUGCAAGGAUGACACGCAAAUUUGUGAAGCGUUCCAUAUUUUU 48967 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6840,sp|AC125154.3|AC125154 Mus musculus chromosome 3 clone RP24-380C2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUAA hit 192 : 30994 31100 (fwd) 122.15 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 30994 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGC 31053 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUU 31054 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUAA 31100 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6848,sp|AC125169.4|AC125169 Mus musculus chromosome 7 clone RP24-464B24, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCUUAAAAAGA hit 193 : 104329 104431 (fwd) 106.47 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 104329 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 104388 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +U+ AA+ 104389 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCUUAAAAAGA---- 104431 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6871,sp|AC125205.4|AC125205 Mus musculus chromosome 14 clone RP23-238I2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACAUACACUAAAACUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUUGUGAAGCGUUCCAU hit 194 : 38170 38270 (fwd) 100.70 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+++CUAAAA UG AACGAUACAGAGAAGAUUAGCAUGGC 38170 GUGCUcgcUUUGgcAGCACAUACACUAAAACUGAAACGAUACAGAGAAGAUUAGCAUGGC 38229 ::::::::::::::::::::::::::::::::::::::::::::::.: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUU.U 102 CCCUGCGCAAGGAUGACACGCA+A+U G GAA+ GUUCC U 38230 CCCUGCGCAAGGAUGACACGCAAAUUUGUGAAGCGUUCC-------aU 38270 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6904,sp|AC125329.4|AC125329 Mus musculus chromosome 10 clone RP23-198F7, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCCCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUAUUU hit 195 : 77699 77805 (fwd) 122.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 77699 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 77758 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AU UUU 77759 CCCUGCCCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUAUUU 77805 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6931,sp|AC125405.4|AC125405 Mus musculus chromosome 14 clone RP23-29M17, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAAGAUGACACACACACACACACACACACA hit 196 : 178020 178117 (fwd) 72.99 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 178020 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 178079 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAA GAUGACAC CA A +C A A A + +C 178080 CCCUGCGCAAAGAUGACACACACACAC-ACACACACACA-------- 178117 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6945,sp|AC125487.3|AC125487 Mus musculus chromosome 12 clone RP23-38L16, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 197 : 99582 99688 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99582 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99641 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 99642 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 99688 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6960,sp|AC125541.4|AC125541 Mus musculus chromosome 15 clone RP23-237I10, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUAGGCAGCACAUAUACUAAAAUUGGAACGAUAAAGAGAAGAUUAGCACGGCACCUGCGCAAGGAUGACACGCAAAUUCGGGAAGCGUUCCAUAUUUUU hit 198 : 81886 81780 (rev) 114.10 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUA AGAGAAGAUUAGCA GGC 133562 GUGCUugcUUAGgcAGCACAUAUACUAAAAUUGGAACGAUAAAGAGAAGAUUAGCACGGC 133621 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 133622 ACCUGCGCAAGGAUGACACGCAAAUUCGGGAAGCGUUCCAUAUUUUU 133668 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6964,sp|AC126025.4|AC126025 Mus musculus chromosome 14 clone RP24-461L18, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUGGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGAAAAUUCGUGAAGCGUUCAAAAA hit 199 : 131844 131742 (rev) 109.88 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 32793 GUGCUggcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 32852 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACG A+A+UCG GAA+ GUUC AAA 32853 CCCUGCGCAAGGAUGACACGAAAAUUCGUGAAGCGUUCAAAAA---- 32895 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7007,sp|AC126280.4|AC126280 Mus musculus chromosome 16 clone RP23-10P23, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 200 : 199921 199815 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 11317 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 11376 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 11377 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 11423 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7041,sp|AC126675.4|AC126675 Mus musculus chromosome 19 clone RP23-430P11, complete sequence. ----isReversed: 1 ----hitSequence: CUCCUAUGAGGUGCUCGCUUUGGCAGGAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACAUGCAGAUUCGUGAAGUGUUCCAUAUUUUU hit 201 : 97423 97307 (rev) 122.28 bits <<<<<.............____..>>>>>::::::::::::::::::::::::::::::: 1 GucCc.............UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGA 45 UCC: UU G :GGA AU+U+CUAAAAUUGGAACGAUACAGAGAAGA 86040 CUCCUaugaggugcucgcUUUGgcAGGAUAUAUACUAAAAUUGGAACGAUACAGAGAAGA 86099 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 46 UUAGCAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UUAGCAUGGCCCCUGC CAAGGAUGACA+GCA A+UCG GAA+UGUUCCA AUUUUU 86100 UUAGCAUGGCCCCUGCACAAGGAUGACAUGCAGAUUCGUGAAGUGUUCCAUAUUUUU 86156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7054,sp|AC126695.4|AC126695 Mus musculus chromosome 18 clone RP23-313D2, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUACCAUGGCCCCUGCGGAAGGAGGACACGCAAAUUCGUGAAGCUUUCCAUAUUUUU hit 202 : 41773 41667 (rev) 116.44 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUA CAUGGC 129655 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUACCAUGGC 129714 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGA GACACGCA+A+UCG GAA+ +UUCCA AUUUUU 129715 CCCUGCGGAAGGAGGACACGCAAAUUCGUGAAGCUUUCCAUAUUUUU 129761 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7091,sp|AC127260.3|AC127260 Mus musculus chromosome 3 clone RP24-315I3, complete sequence. ----isReversed: 1 ----hitSequence: AUCCUUGUGAUCGCUUCGGCAGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGUACCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUAU hit 203 : 73392 73280 (rev) 108.46 bits <<<<<.........____..>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc.........UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 :U C: UUCG :G A:AU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAG 103804 AUCCUugugaucgcUUCGgcAGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAG 103863 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CAUGG CCUGCGCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA AUUU U 103864 CAUGGUACCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUAU 103916 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7120,sp|AC127312.4|AC127312 Mus musculus chromosome 15 clone RP23-306F21, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUCAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU hit 204 : 93046 93152 (fwd) 128.42 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAU AGCAUGGC 93046 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUCAGCAUGGC 93105 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UC GAA+ GUUCCA AUUUUU 93106 CCCUGCGCAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU 93152 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7136,sp|AC127337.4|AC127337 Mus musculus chromosome 12 clone RP23-168F21, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUUGUGAAGCGUUCCAUAUUUUU hit 205 : 175813 175919 (fwd) 126.94 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 175813 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 175872 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+U G GAA+ GUUCCA AUUUUU 175873 CCCUGUGCAAGGAUGACACGCAAAUUUGUGAAGCGUUCCAUAUUUUU 175919 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7351,sp|AC131676.2|AC131676 Mus musculus chromosome 6 clone RP23-330L3, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 206 : 83760 83866 (fwd) 133.32 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 83760 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 83819 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ GUUCCA AUUUUU 83820 CCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU 83866 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7353,sp|AC131700.3|AC131700 Mus musculus chromosome 6 clone RP24-67N3, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAAUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 207 : 158685 158579 (rev) 127.56 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGA UAGCAUGGC 38366 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAAUAGCAUGGC 38425 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ GUUCCA AUUUUU 38426 CCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU 38472 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7383,sp|AC131769.3|AC131769 Mus musculus chromosome 3 clone RP24-290G2, complete sequence. ----isReversed: 0 ----hitSequence: AUACUCGCUCCAGCAGCACAUAUACUAAAACUGGAACAAUAUAGAGAAGAUUAGCAUGGCCCCUGUGCAAAGAUCACACUCAAAUUCAUGAAGAGUUCCAUAUUUUU hit 208 : 86755 86861 (fwd) 86.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U C: U C :G A:AU+U+CUAAAA UGGAAC+AUA AGAGAAGAUUAGCAUGGC 86755 AUACUcgcUCCAgcAGCACAUAUACUAAAACUGGAACAAUAUAGAGAAGAUUAGCAUGGC 86814 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAA GAU ACAC CA+A+UC GAA+ GUUCCA AUUUUU 86815 CCCUGUGCAAAGAUCACACUCAAAUUCAUGAAGAGUUCCAUAUUUUU 86861 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7404,sp|AC132100.3|AC132100 Mus musculus chromosome 18 clone RP24-294D10, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUCAUGAAGCGUUCCAUAUUUUU hit 209 : 126994 126888 (rev) 127.94 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 46956 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 47015 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+UC GAA+ GUUCCA AUUUUU 47016 CCCUGCGCAAGGAUGACACACAAAUUCAUGAAGCGUUCCAUAUUUUU 47062 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7461,sp|AC132437.3|AC132437 Mus musculus chromosome 5 clone RP23-230M17, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCAGUAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUAAAGUGUUCUAUGUUUUU hit 210 : 111409 111303 (rev) 120.22 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 65417 GUGCUcacUUCAguAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 65476 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+UCG AA+UGUUC A +UUUUU 65477 CCCUGCGCAAGGAUGACAUGCAAAUUCGUAAAGUGUUCUAUGUUUUU 65523 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7489,sp|AC132943.2|AC132943 Mus musculus chromosome 2 clone RP24-267L11, complete sequence. ----isReversed: 0 ----hitSequence: GGGCUCACCUAAGCAGCACAUAUACUUAAACCGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACAAAAAUUCAGGAAGCCUUCAACUUGUUUUU hit 211 : 153174 153282 (fwd) 80.99 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: U G :G: CAU+U+CU AAA GGAACGAUACAGAGAAGAUUAGCAUGGC 153174 GGGCUcaccUAAGcAGCACAUAUACUUAAACCGGAACGAUACAGAGAAGAUUAGCAUGGC 153233 ::::::::::::::::::::::::::::::::::..::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU..gUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC A+A+UC GAA+ + + C +UUUUU 153234 CCCUGAGCAAGGAUGACACAAAAAUUCAGGAAGCcuUCAACUUGUUUUU 153282 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7563,sp|AC138173.1|AC138173 Mus musculus chromosome 17 clone rp23-364j24 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUAGCCCCUGCACAAGGAUGACACACAAAUUCAGAAGCAUUCCAUAUUUUU hit 212 : 143685 143790 (fwd) 114.53 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAU GC 143685 GUGCUugcUUCAgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUAGC 143744 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACAC CA+A+UC AGAA+ +UUCCA AUUUUU 143745 CCCUGCACAAGGAUGACACACAAAUUC-AGAAGCAUUCCAUAUUUUU 143790 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7571,sp|AC138605.1|AC138605 Mus musculus chromosome UNK clone RP23-392L23, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 213 : 66355 66249 (rev) 128.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 106330 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 106389 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 106390 CCCUGAGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 106436 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7624,sp|AC145450.4|AC145450 Mus musculus clone rp23-430i3 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: CUCCCUUCCAGCACAUAUACUAAAAUUGGAAUAACACAGAGAAGAUUAGCAUGGUCUCCACACAAGGAUGUCACACAAAUUCAUGAACUGUUCCAUAUU hit 214 : 165347 165445 (fwd) 69.72 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 U C UUC G A AU+U+CUAAAAUUGGAA +A ACAGAGAAGAUUAGCAUGG C C 165347 CUCCCUUCCAGCACAUAUACUAAAAUUGGAAUAACACAGAGAAGAUUAGCAUGGUCUCCA 165406 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CAAGGAUG CAC CA+A+UC GAA UGUUCCA U UU 165407 CACAAGGAUGUCACACAAAUUCAUGAACUGUUCCA---UAUU 165445 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7642,sp|AE014180.1|AE014180 Mus musculus piebald deletion region section 8 of 11 of the complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGUUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCCUUCUAUAUUUUU hit 215 : 180903 181009 (fwd) 122.63 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 180903 GUGCUcguUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 180962 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ UUC A AUUUUU 180963 CCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCCUUCUAUAUUUUU 181009 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7642,sp|AE014180.1|AE014180 Mus musculus piebald deletion region section 8 of 11 of the complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUACACUAAAAUUGGAACAAUAAUGGUGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUACAAAUCCACCAAGUGUUCCUUACUUUU hit 216 : 207875 207768 (rev) 93.59 bits <<<<<...____..>>>>>::::::::::::::::::::::.:::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGG 54 GU:C: UUCG :G:ACAU+++CUAAAAUUGGAAC+AUA G GAAGAUUAGCAUGG 192155 GUGCUcgcUUCGgcAGCACAUACACUAAAAUUGGAACAAUAaUGGUGAAGAUUAGCAUGG 192214 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCCUGCGCAAGGAUGACA+ CA+A+ C AA+UGUUCC A UUUU 192215 CCCCUGCGCAAGGAUGACAUACAAAUCCACCAAGUGUUCCUUACUUUU 192262 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #8765,sp|AF030001.1|AF030001 Mus musculus major histocompatibility locus class III region:butyrophilin-like protein gene, partial cds; Notch4, PBX2, RAGE, l ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 217 : 164177 164071 (rev) 130.26 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 37788 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 37847 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 37848 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 37894 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #10360,sp|AF067129.2|AF067129 Mus musculus protein phosphatase-1 regulatory subunit 7 (Ppp1r7) gene, exons 1 through 11 and complete cds. ----isReversed: 0 ----hitSequence: GUGCUUGAUUUGGCUGCACAUACACCAAAUUUUGAACAAUACAGAGAUUAGCAUGGCUCCUGUGCAAGUAUGACACAUAAAAACGUAGGGAUUCCAUAUUUUU hit 218 : 23197 23299 (fwd) 68.30 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C UU G G:ACAU+++C AAA UU GAAC+AUACAGA GAUUAGCAUGGC 23197 GUGCUugaUUUGgcUGCACAUACACCAAAUUUUGAACAAUACAGA---GAUUAGCAUGGC 23253 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUG GCAAG AUGACAC A+AA+CG A++ +UUCCA AUUUUU 23254 UCCUGUGCAAGUAUGACACAUAAAAACGU-AGGGAUUCCAUAUUUUU 23299 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #11552,sp|AF094685.1|AF094685 Mus musculus Sos2 gene, exons 10b, 11 and 12, partial cds. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCCACAGCACACAUACUAAAAUUGGACCAACACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGCAUGCAAAUUCAUGAAGUGUUCCAUAUUUUA hit 219 : 2973 3078 (fwd) 104.33 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACA +U+CUAAAAUUGGA C+A ACAGAGAAGAUUAGCAUGGC 2973 GUGCUcgcUUCCacAGCACACAUACUAAAAUUGGACCAACACAGAGAAGAUUAGCAUGGC 3032 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUG CA+GCA+A+UC GAA+UGUUCCA AUUUU 3033 CCCUGCGCAAGGAUG-CAUGCAAAUUCAUGAAGUGUUCCAUAUUUUA 3078 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #12019,sp|AF109905.1|AF109905 Mus musculus major histocompatibility locus class III regions Hsc70t gene, partial cds; smRNP, G7A, NG23, MutS homolog, CLCP, N ----isReversed: 0 ----hitSequence: GAGCUCUCUUCAGUAGCACUCACACUAAAAUUGGAAAGAUACAGAGAUUAGCAUGGCCCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU hit 220 : 71964 72067 (fwd) 80.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUC :G: C +++CUAAAAUUGGAA GAUACAGA GAUUAGCAUGGC 71964 GAGCUcucUUCAguAGCACUCACACUAAAAUUGGAAAGAUACAGA---GAUUAGCAUGGC 72020 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUG CACGCA+A+U G A++ +UUCCA AUUUUU 72021 CCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU 72067 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #20832,sp|AF397035.1|AF397035 Mus musculus strain B10.A(1R) heat shock protein Hsc70t (Hsc70t) gene, partial cds; and small ribonuclear protein G7b (G7b) gen ----isReversed: 0 ----hitSequence: GAGCUCUCUUCAGUAGCACUCACACUAAAAUUGGAAAGAUACAGAGAUUAGCAUGGCCCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU hit 221 : 71155 71258 (fwd) 80.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUC :G: C +++CUAAAAUUGGAA GAUACAGA GAUUAGCAUGGC 71155 GAGCUcucUUCAguAGCACUCACACUAAAAUUGGAAAGAUACAGA---GAUUAGCAUGGC 71211 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUG CACGCA+A+U G A++ +UUCCA AUUUUU 71212 CCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU 71258 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #20833,sp|AF397036.1|AF397036 Mus musculus strain B10.A(2R) heat shock protein Hsc70t (Hsc70t) gene, partial cds; and small ribonuclear protein G7b (G7b) gen ----isReversed: 0 ----hitSequence: GAGCUCUCUUCAGUAGCACUCACACUAAAAUUGGAAAGAUACAGAGAUUAGCAUGGCCCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU hit 222 : 71693 71796 (fwd) 80.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUC :G: C +++CUAAAAUUGGAA GAUACAGA GAUUAGCAUGGC 71693 GAGCUcucUUCAguAGCACUCACACUAAAAUUGGAAAGAUACAGA---GAUUAGCAUGGC 71749 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUG CACGCA+A+U G A++ +UUCCA AUUUUU 71750 CCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU 71796 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23084,sp|AF533892.1|AF533892 Mus musculus p63 (Trp63) gene, alternatively spliced, complete cds. ----isReversed: 1 ----hitSequence: AUGCUCUCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCCUGGCCCCUGCGCAAGGAUGACAAGCAAAUUCAUGAAGUGUUCCAUAUUUAA hit 223 : 18603 18497 (rev) 104.72 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGC UGGC 189556 AUGCUcucUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCCUGGC 189615 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA GCA+A+UC GAA+UGUUCCA AUUU 189616 CCCUGCGCAAGGAUGACAAGCAAAUUCAUGAAGUGUUCCAUAUUUAA 189662 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23631,sp|AK122424.1|AK122424 Mus musculus mRNA for mKIAA1039 protein. ----isReversed: 0 ----hitSequence: UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 224 : 1 82 (fwd) 85.47 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 U AAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 ------U--------------AAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 40 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 41 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 82 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23898,sp|AL590625.16|AL590625 Mouse DNA sequence from clone RP23-467M8 on chromosome 13 ----isReversed: 1 ----hitSequence: AUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAUCAUGGCCCCCUGCACAAGAUUGACAUGCAAAUUCGUGAAGUGUUCCAUAUUUUU hit 225 : 128820 128713 (rev) 104.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUA CAUGGC 36926 AUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAUCAUGGC 36985 ::.::::::::::::::::::::::::::::::::::::::::::::: 56 CC.CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC CUGC CAAG UGACA+GCA+A+UCG GAA+UGUUCCA AUUUUU 36986 CCcCUGCACAAGAUUGACAUGCAAAUUCGUGAAGUGUUCCAUAUUUUU 37033 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23913,sp|AL590992.12|AL590992 Mouse DNA sequence from clone RP23-212C14 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 226 : 46920 47026 (fwd) 133.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 46920 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 46979 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 46980 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 47026 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23921,sp|AL591067.35|AL591067 Mouse DNA sequence from clone RP23-333D2 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUCUCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGGAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 227 : 89868 89974 (fwd) 126.27 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAG AGAUUAGCAUGGC 89868 GUGCUcucUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGGAGAUUAGCAUGGC 89927 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 89928 CCCUGCACAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 89974 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23936,sp|AL591174.13|AL591174 Mouse DNA sequence from clone RP23-271B20 on chromosome 11 ----isReversed: 1 ----hitSequence: AAGCUAGCUUUGGCAGUACAUGUAUUAAAAUUGUAACUAUACAGAGAAGAUUAACACGGCCCCUGUGCAAGGAUGAUAAGCAAAUUCAUGAAACAUUCCAUAUUUAA hit 228 : 106478 106372 (rev) 75.40 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 : C: UU G :G :AU U+ UAAAAUUG AAC AUACAGAGAAGAUUA CA GGC 98902 AAGCUagcUUUGgcAGUACAUGUAUUAAAAUUGUAACUAUACAGAGAAGAUUAACACGGC 98961 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGA A GCA+A+UC GAAA +UUCCA AUUU 98962 CCCUGUGCAAGGAUGAUAAGCAAAUUCAUGAAACAUUCCAUAUUUAA 99008 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23960,sp|AL591478.19|AL591478 Mouse DNA sequence from clone RP23-140D14 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAGACUAAAAUUGAAACGAUACAGAGAAGAUUAUCAUGGCCCCUGUGUAAAGAUAACACGCAAAUUUGUGAAGCGUUCCAUAUUUAA hit 229 : 155007 155113 (fwd) 90.08 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+ +CUAAAAUUG AACGAUACAGAGAAGAUUA CAUGGC 155007 GUGCUcgcUUCGgcAGCACAUAGACUAAAAUUGAAACGAUACAGAGAAGAUUAUCAUGGC 155066 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG G AA GAU ACACGCA+A+U G GAA+ GUUCCA AUUU 155067 CCCUGUGUAAAGAUAACACGCAAAUUUGUGAAGCGUUCCAUAUUUAA 155113 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24031,sp|AL592489.13|AL592489 Mouse DNA sequence from clone RP23-226J16 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUACAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGAAUGACACACAAAUUCAUGAAGCGUUCCAUAUU hit 230 : 99656 99759 (fwd) 99.70 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUA AAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 99656 GUGCUugcUUCGgcAGCACAUAUACUACAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGC 99715 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAG AUGACAC CA+A+UC GAA+ GUUCCA U UU 99716 CCCUGCGCAAGAAUGACACACAAAUUCAUGAAGCGUUCCA---UAUU 99759 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24060,sp|AL596122.14|AL596122 Mouse DNA sequence from clone RP23-320E6 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUUGCUUCCGCAGCACAUAUGCUAAAAUUGGCAUGACACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAGUUUU hit 231 : 32499 32605 (fwd) 108.15 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+UGCUAAAAUUGG A GA ACAGAGAAGAUUAGCAUGGC 32499 GUGCUugcuUCCGcAGCACAUAUGCUAAAAUUGGCAUGACACAGAGAAGAUUAGCAUGGC 32558 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA A UUUU 32559 CCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAGUUUU 32605 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24065,sp|AL596130.13|AL596130 Mouse DNA sequence from clone RP23-209O5 on chromosome 11 ----isReversed: 1 ----hitSequence: GUCCUUGCUUGGCAGCACAUUUACUAAAAUUGGAGCACAGAGAAAAGAUUAGCAUGGCCCCUGUGCAGAGAAUGACACGCAGCUCUGUGAAGUGCUCCAUAUAUUU hit 232 : 133373 133268 (rev) 66.89 bits <<<<<...____.>>>>>:::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCC 56 GU C: UU G :G ACAU U+CUAAAAUUGGA C A A AGA AAGAUUAGCAUGGCC 69628 GUCCUugcUUGGcAGCACAUUUACUAAAAUUGGAGC-ACAGAGAAAAGAUUAGCAUGGCC 69686 ::::::::.:::::::::::::::::::::::::::::::::::::: 57 CCUGCGCA.AGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUG GCA AG AUGACACGCA + G GAA+UG UCCA AU UUU 69687 CCUGUGCAgAGAAUGACACGCAGCUCUGUGAAGUGCUCCAUAUAUUU 69733 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24066,sp|AL596136.5|AL596136 Mouse DNA sequence from clone RP23-83I13 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUUGCUUCAGCAACACAUAGACUAAGAUUAGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACACAAAUUCAUGAACAUUCCAUAUUUUU hit 233 : 155861 155756 (rev) 96.25 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUC : :ACAU+ +CUAA AUU GAACGAUACAGAGAAGAUUAGCAUGGC 98256 GUGCUugcUUCAgcAACACAUAGACUAAGAUUAGAACGAUACAGAGAAGAUUAGCAUGGC 98315 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACAC CA+A+UC GAA +UUCCA AUUUUU 98316 CCCUGCACAAGGAUGACACACAAAUUCAUGAAC-AUUCCAUAUUUUU 98361 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24067,sp|AL596180.7|AL596180 Mouse DNA sequence from clone RP23-243J8 on chromosome 11 ----isReversed: 0 ----hitSequence: AUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCACGAAUAUA hit 234 : 99789 99895 (fwd) 104.09 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 99789 AUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 99848 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UCG GAA+ +UUC + A U U 99849 CCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCACGAAUAUA 99895 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24070,sp|AL596183.11|AL596183 Mouse DNA sequence from clone RP23-286B12 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACAUACAAAUUUGUGAAGCAGUCCAUAUUUUU hit 235 : 64868 64974 (fwd) 117.05 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 64868 GUGCUugcUUUGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 64927 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACA+ CA+A+U G GAA+ + UCCA AUUUUU 64928 CCCUGCACAAGGAUGACAUACAAAUUUGUGAAGCAGUCCAUAUUUUU 64974 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24081,sp|AL596256.14|AL596256 Mouse DNA sequence from clone RP23-259D24 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUUGCCUUGGCAGCUCGUUUACUAAGAUUGGAAUAAUACAGAGAAGAUUAGUGUGGCCCUGCAAAAGGAUGGCAUGCACAUUUGUGAAGUGUUCUAUAGUUUC hit 236 : 124380 124275 (rev) 68.11 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UU G :G: C U U+CUAA AUUGGAA +AUACAGAGAAGAUUAG UGG 45026 GUGCUugccUUGGcAGCUCGUUUACUAAGAUUGGAAUAAUACAGAGAAGAUUAGUGUGG- 45084 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC AAGGAUG CA+GCA A+U G GAA+UGUUC A A UUU 45085 CCCUGCAAAAGGAUGGCAUGCACAUUUGUGAAGUGUUCUAUAGUUUC 45131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24082,sp|AL596258.15|AL596258 Mouse DNA sequence from clone RP23-226P4 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGGACGAUACAGAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUU hit 237 : 191144 191044 (rev) 91.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGG ACGAUACAGA GAUUAGCAUGGC 27894 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGGACGAUACAGA---GAUUAGCAUGGC 27950 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+UC GAA+ +UUCCA U UU 27951 CCCUGCGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCA---UAUU 27994 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24125,sp|AL603843.15|AL603843 Mouse DNA sequence from clone RP23-412D17 on chromosome 15 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 238 : 97152 97046 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 106498 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 106557 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 106558 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 106604 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24150,sp|AL604045.7|AL604045 Mouse DNA sequence from clone RP23-418O11 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUACACUAAAAAUUGGAAUGAUGCAGAGAAGAUUAGCAUGACCCCUGCACAAGGAUGACACACAAAUUCGUGAAGCAUUCCAUAUUUUU hit 239 : 42255 42362 (fwd) 105.00 bits <<<<<...____..>>>>>:::::::.::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU.AAAAUUGGAACgAUACAGAGAAGAUUAGCAUGG 54 GU:C: UUCG :G:ACAU+++CU AAAAUUGGAA GAU CAGAGAAGAUUAGCAUG 42255 GUGCUcgcUUCGgcAGCACAUACACUaAAAAUUGGAAUGAUGCAGAGAAGAUUAGCAUGA 42314 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCCUGC CAAGGAUGACAC CA+A+UCG GAA+ +UUCCA AUUUUU 42315 CCCCUGCACAAGGAUGACACACAAAUUCGUGAAGCAUUCCAUAUUUUU 42362 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24228,sp|AL606928.9|AL606928 Mouse DNA sequence from clone RP23-154F2 on chromosome 3 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 240 : 45627 45520 (rev) 127.41 bits <<<<<...____..>>>>>:::::::.::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU.AAAAUUGGAACgAUACAGAGAAGAUUAGCAUGG 54 GU:C: UUCG :G:ACAU+U+CU AAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG 140979 GUGCUcgcUUCGgcAGCACAUAUACUaAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG 141038 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 141039 CCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 141086 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24325,sp|AL626770.9|AL626770 Mouse DNA sequence from clone RP23-379J18 on chromosome 11 ----isReversed: 1 ----hitSequence: UUGCUUCAGCAAAAAAAUUGGUACGAUACAGAGAAGAUUAACAUGAACCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCACAUUUUU hit 241 : 12584 12491 (rev) 78.46 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :U:C: UC :G:A:A AAAAUUGG ACGAUACAGAGAAGAUUA CAUG CCCUG 176271 UUGCU-UC-AGCAAA------AAAAUUGGUACGAUACAGAGAAGAUUAACAUGAACCCUG 176322 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 176323 UGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCACAUUUUU 176364 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24334,sp|AL626783.16|AL626783 Mouse DNA sequence from clone RP23-406B13 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUUUGAAUGUGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCGUGGCCCCUGUGCAAGGAUGACAUGUAAAUUUGUGAAGAGUUCCAUAUUUUU hit 242 : 16247 16360 (fwd) 114.88 bits <<<<<..........____..>>>>>:::::::::::::::::::::::::::::::::: 1 GucCc..........UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUA 48 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUA 16247 GUGCUuugaaugugcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUA 16306 :::::::::::::::::::::::::::::::::::::::::::::::::::::: 49 GCAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GC UGGCCCCUG GCAAGGAUGACA+G A+A+U G GAA+ GUUCCA AUUUUU 16307 GCGUGGCCCCUGUGCAAGGAUGACAUGUAAAUUUGUGAAGAGUUCCAUAUUUUU 16360 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24401,sp|AL627238.15|AL627238 Mouse DNA sequence from clone RP23-46M23 on chromosome 4 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 243 : 193644 193538 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 16737 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 16796 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 16797 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 16843 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24454,sp|AL645481.11|AL645481 Mouse DNA sequence from clone RP23-243L6 on chromosome 4 ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAACACAUAUACUAAAAUUGGACAGAAACAGAGAAGAUUAGUAUGGCCCCUACACAAGGAUGACAUAAGAAUUCAUGAAGCAUUCCAUGUUUUU hit 244 : 31767 31661 (rev) 87.10 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGA GA ACAGAGAAGAUUAG AUGGC 5357 GUGCUugcUUCGgcAACACAUAUACUAAAAUUGGACAGAAACAGAGAAGAUUAGUAUGGC 5416 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU C CAAGGAUGACA+ +A+UC GAA+ +UUCCA +UUUUU 5417 CCCUACACAAGGAUGACAUAAGAAUUCAUGAAGCAUUCCAUGUUUUU 5463 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24475,sp|AL645563.12|AL645563 Mouse DNA sequence from clone RP23-132L14 on chromosome 4 ----isReversed: 1 ----hitSequence: GUGCUAGCUUCAGCAGCACAUACACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCCGUGCAAGGAUGACAUGCAAAUUCAUGAUGUGUUCCAUAUUUUU hit 245 : 134169 134063 (rev) 116.72 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+++CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 80288 GUGCUagcUUCAgcAGCACAUACACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 80347 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC G GCAAGGAUGACA+GCA+A+UC GA +UGUUCCA AUUUUU 80348 CCCCGUGCAAGGAUGACAUGCAAAUUCAUGAUGUGUUCCAUAUUUUU 80394 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24507,sp|AL645625.15|AL645625 Mouse DNA sequence from clone RP23-183L1 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUAAAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAAGAGAGACCAGGACUUAAGAGGCAGAGACAGGAGCAUCACUGUGUU hit 246 : 1448 1563 (fwd) 69.56 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUU AAC+AUACAGAGAAGAUUAGCAUGGC 1448 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUAAAACAAUACAGAGAAGAUUAGCAUGGC 1507 ::::::::::::::::::::::::::::::::::..........::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU..........gUUCCaaaUUUUU 102 CCCUGCGCAA GA GA AC A U AGA++ G + CA U UU 1508 CCCUGCGCAAAGA-GAGACCAGGACUUAAGAGGCagagacaggaGCAUCACUGUGUU 1563 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24631,sp|AL645969.20|AL645969 Mouse DNA sequence from clone RP23-101H2 on chromosome 11 ----isReversed: 1 ----hitSequence: GCGCUUGCUUUGGCAGCACAUAGACUAAAAUUGGAAUGCUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCAUUCCAUAUUUUU hit 247 : 69543 69437 (rev) 103.93 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G::C: UU G :G::CAU+ +CUAAAAUUGGAA G UACAGAGAAGAUUAGCAUGGC 85145 GCGCUugcUUUGgcAGCACAUAGACUAAAAUUGGAAUGCUACAGAGAAGAUUAGCAUGGC 85204 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+U G GAA+ +UUCCA AUUUUU 85205 CCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCAUUCCAUAUUUUU 85251 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24646,sp|AL646001.7|AL646001 Mouse DNA sequence from clone RP23-10B17 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUCCCUUCGGCAGCACAUAUACUAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCUCCCGCGCAAGGAUGAUACACAAAUUCCUGAAGCAUUCCAAUUUUUU hit 248 : 90366 90471 (fwd) 104.95 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAA UGGAAC+AUACAGAGAAGAUUAGCAUGGC 90366 GUGCUcccUUCGgcAGCACAUAUACUAAAU-UGGAACAAUACAGAGAAGAUUAGCAUGGC 90424 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC GCGCAAGGAUGA AC CA+A+UC GAA+ +UUCCAA UUUUU 90425 UCCCGCGCAAGGAUGAUACACAAAUUCCUGAAGCAUUCCAAUUUUUU 90471 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24651,sp|AL646042.14|AL646042 Mouse DNA sequence from clone RP23-70A15 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 249 : 136607 136501 (rev) 125.93 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 23087 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGC 23146 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 23147 CCCUGAGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 23193 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24707,sp|AL662853.16|AL662853 Mouse DNA sequence from clone RP23-293J16 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGUUCGCUUUGGCAGCACAUAUACUAAAAUCGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUUGUGAAGCAUUCCAUAUUUAA hit 250 : 76910 77016 (fwd) 108.60 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UU G :::ACAU+U+CUAAAAU GGAACGAUACAGAGAAGAUUAGCAUGGC 76910 GUGUUcgcUUUGgcAGCACAUAUACUAAAAUCGGAACGAUACAGAGAAGAUUAGCAUGGC 76969 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+U G GAA+ +UUCCA AUUU 76970 CCCUGCACAAGGAUGACACGCAAAUUUGUGAAGCAUUCCAUAUUUAA 77016 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24722,sp|AL662895.7|AL662895 Mouse DNA sequence from clone RP23-340L19 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAGGCAAAUUCGUGAAGUGUUCCAUAUUUUU hit 251 : 98684 98793 (fwd) 120.32 bits <<<<<...____.....>>>>>:::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG.....gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAU 52 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAU 98684 GUGCUcgcUUCGgcggcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAU 98743 :::::::::::::::::::::::::::::::::::::::::::::::::: 53 GGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GGCCCCUG GCAAGGAUGACA GCA+A+UCG GAA+UGUUCCA AUUUUU 98744 GGCCCCUGUGCAAGGAUGACAGGCAAAUUCGUGAAGUGUUCCAUAUUUUU 98793 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24759,sp|AL663040.6|AL663040 Mouse DNA sequence from clone RP23-61M22 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGGAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCGUGGCUCCUGUUCAAGGAUGACAUGCAAAUUUGUGAAGCAUUCCAUAUUUUU hit 252 : 48122 48228 (fwd) 108.20 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGC UGGC 48122 GUGCUcgcUUCGggAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCGUGGC 48181 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUG CAAGGAUGACA+GCA+A+U G GAA+ +UUCCA AUUUUU 48182 UCCUGUUCAAGGAUGACAUGCAAAUUUGUGAAGCAUUCCAUAUUUUU 48228 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24865,sp|AL669884.7|AL669884 Mouse DNA sequence from clone RP23-451A6 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGACCCUUGCGCAAGGAUGACACGCAAAUUCCUGAAGUGUUCCAUAUUUUU hit 253 : 57401 57507 (fwd) 117.32 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUG C 57401 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGAC 57460 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGCGCAAGGAUGACACGCA+A+UC GAA+UGUUCCA AUUUUU 57461 CCUUGCGCAAGGAUGACACGCAAAUUCCUGAAGUGUUCCAUAUUUUU 57507 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24875,sp|AL669902.8|AL669902 Mouse DNA sequence from clone RP23-459P8 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACUCGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 254 : 58154 58048 (rev) 129.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 79090 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 79149 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGAC CGCA+A+UCG GAA+ GUUCCAAAUUUUU 79150 CCCUGCGCAAGGAUGACUCGCAAAUUCGUGAAGCGUUCCAAAUUUUU 79196 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24932,sp|AL669976.11|AL669976 Mouse DNA sequence from clone RP23-15J3 on chromosome X ----isReversed: 0 ----hitSequence: CUGCUCACUUCGGCAGCACAUAUACUAAAAUUGAAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 255 : 113488 113594 (fwd) 122.36 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UUCG :G:A AU+U+CUAAAAUUG AA GAUACAGAGAAGAUUAGCAUGGC 113488 CUGCUcacUUCGgcAGCACAUAUACUAAAAUUGAAAUGAUACAGAGAAGAUUAGCAUGGC 113547 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ GUUCCA AUUUUU 113548 CCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU 113594 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24951,sp|AL670236.9|AL670236 Mouse DNA sequence from clone RP23-242K15 on chromosome 4 ----isReversed: 1 ----hitSequence: UCGCUUUGGCAGCACAUACACUAAAACUGGAAUGGUACAGAUUAGCAUGGUCCCUGUGCAAGGAUGACAUGCAAAUCCAUGAACCGUUCCAUAUUUUU hit 256 : 26727 26630 (rev) 68.14 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :::C:UU G :G:::AU+++CUAAAA UGGAA G UACAGA UUAGCAUGG CCCU 206224 UCGCUUUGGcAGCACAUACACUAAAACUGGAAUGGUACAGA-----UUAGCAUGGUCCCU 206278 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 G GCAAGGAUGACA+GCA+A+ C GAA GUUCCA AUUUUU 206279 GUGCAAGGAUGACAUGCAAAUCCAUGAACCGUUCCAUAUUUUU 206321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24958,sp|AL670276.12|AL670276 Mouse DNA sequence from clone RP23-115D21 on chromosome 4 ----isReversed: 1 ----hitSequence: UGAGAAAAAAGUGCUCAUUUGGAACAAUACAGAGAAGAUUAGCAUGGUCCCUGUGCAAGGAUGAGACGAAAAUUCGUGAAGCGUUCCAUAGUUUU hit 257 : 17368 17274 (rev) 72.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 U G A+A UGCU A UUGGAAC+AUACAGAGAAGAUUAGCAUGG CCCUG 130119 -----UGAG-AAAAAAGUGCUC-AUUUGGAACAAUACAGAGAAGAUUAGCAUGGUCCCUG 130171 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCAAGGAUGA ACG A+A+UCG GAA+ GUUCCA A UUUU 130172 UGCAAGGAUGAGACGAAAAUUCGUGAAGCGUUCCAUAGUUUU 130213 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24988,sp|AL670778.14|AL670778 Mouse DNA sequence from clone RP23-234A24 on chromosome X ----isReversed: 1 ----hitSequence: GUGGUCAUUUUUGCAACACAUAUAUUAAAAUUGGAAGUCUACAGAGAAAAUUAGCAUGGACUCUACACAAGGAUGACAUCCAAAUUUGUAAAGUGCUCCAUAUUUUU hit 258 : 14410 14304 (rev) 78.91 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UU G : :ACAU+U+ UAAAAUUGGAA UACAGAGAA AUUAGCAUGG 187311 GUGGUcauuUUUGcAACACAUAUAUUAAAAUUGGAAGUCUACAGAGAAAAUUAGCAUGGA 187370 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CU C CAAGGAUGACA+ CA+A+U G AA+UG UCCA AUUUUU 187371 CUCUACACAAGGAUGACAUCCAAAUUUGUAAAGUGCUCCAUAUUUUU 187417 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25000,sp|AL670953.5|AL670953 Mouse DNA sequence from clone RP23-233H9 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGGACCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 259 : 102853 102959 (fwd) 119.03 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGG 102853 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGG 102912 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 102913 ACCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 102959 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25029,sp|AL671492.12|AL671492 Mouse DNA sequence from clone RP23-286H11 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCACUCUGACAGCAAAUAUACUAAAAUUGGAACGCUACAGAGAAGAUUAACAUGGUCCCUGUGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUA hit 260 : 40599 40705 (fwd) 98.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: U G :G:A AU+U+CUAAAAUUGGAACG UACAGAGAAGAUUA CAUGG 40599 GUGCUcacUCUGacAGCAAAUAUACUAAAAUUGGAACGCUACAGAGAAGAUUAACAUGGU 40658 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UC GAA+UGUUCCA AUUUU 40659 CCCUGUGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUA 40705 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25036,sp|AL671671.5|AL671671 Mouse DNA sequence from clone RP23-419D6 on chromosome 4 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 261 : 6628 6522 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 95671 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 95730 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 95731 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 95777 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25073,sp|AL671885.13|AL671885 Mouse DNA sequence from clone RP23-132C19 on chromosome X ----isReversed: 1 ----hitSequence: AUGCUUACUUCAGCAGCACAUAUACUAAAAUUGGAACGAUAGAGAAGAUUAGCAUGGCCCUUGCGAAAGGAUGAUACACAAAUUCAUGAAGUGUUUCAUAUUUUU hit 262 : 41240 41136 (rev) 95.97 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUC :G:A:AU+U+CUAAAAUUGGAACGAUA GAGAAGAUUAGCAUGGC 112780 AUGCUuacUUCAgcAGCACAUAUACUAAAAUUGGAACGAUA--GAGAAGAUUAGCAUGGC 112837 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGCG AAGGAUGA AC CA+A+UC GAA+UGUU CA AUUUUU 112838 CCUUGCGAAAGGAUGAUACACAAAUUCAUGAAGUGUUUCAUAUUUUU 112884 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25089,sp|AL671902.4|AL671902 Mouse DNA sequence from clone RP23-358K4 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAA hit 263 : 143193 143295 (fwd) 107.84 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 143193 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 143252 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA A 143253 CCCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAA---- 143295 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25124,sp|AL671975.12|AL671975 Mouse DNA sequence from clone RP23-25O15 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAGCGAUACAGAGAAGACUAGCAUGGCUCCUGAGCAAGAAUGAAAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU hit 264 : 202595 202489 (rev) 95.95 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGA UAGCAUGGC 28936 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAGCGAUACAGAGAAGACUAGCAUGGC 28995 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUG GCAAG AUGA A+GCA+A+UC GAA+ +UUCCA AUUUUU 28996 UCCUGAGCAAGAAUGAAAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU 29042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25169,sp|AL672034.4|AL672034 Mouse DNA sequence from clone RP23-461P10 on chromosome X ----isReversed: 1 ----hitSequence: CACUGUGGCAGUACUAUAAUAAAAUUGGAAUGAUACAGUGAAGAUUAGCAUGGCCCAUGCACAAUGAUGACACACAAAUUGUGAAGUAUUCUAUAUUUUC hit 265 : 118754 118655 (rev) 77.94 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :C:+ U G+:G: U+U+ UAAAAUUGGAA GAUACAG GAAGAUUAGCAUGGCCC UG 80348 CACUG-UGGCAGUACUAUAAUAAAAUUGGAAUGAUACAGUGAAGAUUAGCAUGGCCCAUG 80406 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CAA GAUGACAC CA+A+U G GAA+U+UUC A AUUUU 80407 CACAAUGAUGACACACAAAUU-GUGAAGUAUUCUAUAUUUUC 80447 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25177,sp|AL672049.13|AL672049 Mouse DNA sequence from clone RP23-188K3 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAACUGGAACAAAACAGAGGAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACCCAAAUUCGUAAAGUUCCAUAUUUUU hit 266 : 23697 23593 (rev) 98.34 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAA UGGAAC+A ACAGAG AGAUUAGCAUGGC 200338 GUGCUcgcUUCGgcAGCACAUAUACUAAAACUGGAACAAAACAGAGGAGAUUAGCAUGGC 200397 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+UCG AAA GUUCCA AUUUUU 200398 CCCUGUGCAAGGAUGACACCCAAAUUCGU-AAA-GUUCCAUAUUUUU 200442 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25179,sp|AL672051.14|AL672051 Mouse DNA sequence from clone RP23-332O3 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGUAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 267 : 13698 13804 (fwd) 128.62 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAG AGAUUAGCAUGGC 13698 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGUAGAUUAGCAUGGC 13757 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 13758 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 13804 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25200,sp|AL672082.15|AL672082 Mouse DNA sequence from clone RP23-67B21 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 268 : 5221 5327 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 5221 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 5280 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 5281 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 5327 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25200,sp|AL672082.15|AL672082 Mouse DNA sequence from clone RP23-67B21 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAUUAGCAUGACCCCAGAACAAGGAUGCUAUGCAGAUUCAUAAAGCGUUCCAUAAUUUU hit 269 : 50002 50105 (fwd) 66.58 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUU GAA GAUACAGA GAUUAGCAUG C 50002 GUGCUcacUUCAgcAGCACAUAUACUAAAAUUAGAAUGAUACAGA---GAUUAGCAUGAC 50058 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC G CAAGGAUG A+GCA A+UC AA+ GUUCCA A UUUU 50059 CCCAGAACAAGGAUGCUAUGCAGAUUCAUAAAGCGUUCCAUAAUUUU 50105 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25223,sp|AL672124.12|AL672124 Mouse DNA sequence from clone RP23-392H8 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUAUUAAAAUUGUAACCAUACAGAGAAGAUUAGCAUGGACCCUGUGCAAGGAUGACAUGUAAAUUCGUAAAGCGUUCCAUAUUUUU hit 270 : 28594 28488 (rev) 103.97 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+ UAAAAUUG AAC AUACAGAGAAGAUUAGCAUGG 168811 GUGCUcacUUCGgcAGCACAUAUAUUAAAAUUGUAACCAUACAGAGAAGAUUAGCAUGGA 168870 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+G A+A+UCG AA+ GUUCCA AUUUUU 168871 CCCUGUGCAAGGAUGACAUGUAAAUUCGUAAAGCGUUCCAUAUUUUU 168917 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25267,sp|AL672205.6|AL672205 Mouse DNA sequence from clone RP23-149B17 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCAUUCCAUAUUUUU hit 271 : 56676 56782 (fwd) 124.42 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 56676 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 56735 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+UCG GAA+ +UUCCA AUUUUU 56736 CCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCAUUCCAUAUUUUU 56782 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25268,sp|AL672208.11|AL672208 Mouse DNA sequence from clone RP23-318H23 on chromosome 9 ----isReversed: 0 ----hitSequence: CUGCUCGCUUUGGCAACAUAUAUACUAAAAUUGGAACGAUACUGACAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACAUGCAAAUUCGUGAAGCGAUCCAUAUUUUU hit 272 : 23403 23509 (fwd) 105.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U: : UU G : :A AU+U+CUAAAAUUGGAACGAUAC GA AAGAUUAGCAUGGC 23403 CUGCUcgcUUUGgcAACAUAUAUACUAAAAUUGGAACGAUACUGACAAGAUUAGCAUGGC 23462 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UCG GAA+ G UCCA AUUUUU 23463 CCCUGAGCAAGGAUGACAUGCAAAUUCGUGAAGCGAUCCAUAUUUUU 23509 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25270,sp|AL672210.14|AL672210 Mouse DNA sequence from clone RP23-44A17 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAACUAUAGAGAGAAAAUCGACAUGGCCCUUGUGCAAGGAUGACACCCAAAUUUAUGAACUGCUCCAUAUUUUU hit 273 : 22991 22885 (rev) 84.50 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC AUA AGAGAA AU CAUGGC 88006 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAACUAUAGAGAGAAAAUCGACAUGGC 88065 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UG GCAAGGAUGACAC CA+A+U GAA UG UCCA AUUUUU 88066 CCUUGUGCAAGGAUGACACCCAAAUUUAUGAACUGCUCCAUAUUUUU 88112 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25297,sp|AL672249.6|AL672249 Mouse DNA sequence from clone RP23-92P11 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCACUUCCGCAGCACAUACACUAAAAUUGGAACAAAACAGAGAAGGUUAGCAUGGCCCUUGUACAAGUAUGACAUGCACGUUCAUGAAGCUUCCAUAUUUUU hit 274 : 178472 178577 (fwd) 83.56 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+++CUAAAAUUGGAAC+A ACAGAGAAG UUAGCAUGGC 178472 GUGCUcacuUCCGcAGCACAUACACUAAAAUUGGAACAAAACAGAGAAGGUUAGCAUGGC 178531 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UG CAAG AUGACA+GCA +UC GAA+ UUCCA AUUUUU 178532 CCUUGUACAAGUAUGACAUGCACGUUCAUGAAGC-UUCCAUAUUUUU 178577 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25359,sp|AL683824.8|AL683824 Mouse DNA sequence from clone RP23-90O18 on chromosome 3 ----isReversed: 0 ----hitSequence: AUGCUCGCUUCGGCAGCACAUAUACUAACAUUGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGCAUGACAUGUAAAUUCUAGAAGUGUUCCAUAUUUUU hit 275 : 166877 166982 (fwd) 108.46 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+U+CUAA AUUG AACGAUACAGAGAAGAUUAGCAUGGC 166877 AUGCUcgcUUCGgcAGCACAUAUACUAACAUUG-AACGAUACAGAGAAGAUUAGCAUGGC 166935 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAG AUGACA+G A+A+UC AGAA+UGUUCCA AUUUUU 166936 CCCUGCGCAAGCAUGACAUGUAAAUUCUAGAAGUGUUCCAUAUUUUU 166982 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25362,sp|AL683829.15|AL683829 Mouse DNA sequence from clone RP23-64F17 on chromosome 4 Contains three novel genes, the gene for a novel major urinary protein ----isReversed: 0 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 276 : 176176 176282 (fwd) 127.61 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 176176 GUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 176235 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UCG GAA+ GUUCCA AUUUUU 176236 CCCUGAGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU 176282 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25412,sp|AL691445.21|AL691445 Mouse DNA sequence from clone RP23-67G3 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGCUUGCUAAGGAGAGAGCUGGGCUUUCCAAGUUACCUGAUUUA hit 277 : 122316 122429 (fwd) 71.55 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 122316 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 122375 ::::::::::::::::::::::::::::::::::...........::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU...........gUUCCaaaUUUUU 102 CCCUGCGC A G U +GC++A GAGA+ U GUU C+ + UUU 122376 CCCUGCGCGAAGCU----UGCUAAGGAGAGAGCUgggcuuuccaaGUUACCUGAUUUA 122429 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25432,sp|AL691484.14|AL691484 Mouse DNA sequence from clone RP23-230C2 on chromosome 4 Contains the Atp6v1g1 gene for 13kD lysosomal H+ transporting ATPase V ----isReversed: 1 ----hitSequence: ACGCUCACUUCGGCAGCACAUAGACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUCCCAUAUUUUU hit 278 : 46770 46664 (rev) 117.67 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :::C: UUCG :G:::AU+ +CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 69520 ACGCUcacUUCGgcAGCACAUAGACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 69579 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ GU CCA AUUUUU 69580 CCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUCCCAUAUUUUU 69626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25529,sp|AL731554.13|AL731554 Mouse DNA sequence from clone RP23-337H1 on chromosome 5 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCUUGCAGAAGGAUGACACGCAAAUCCGUGAAGCGUUCCAUAUUUUU hit 279 : 26607 26501 (rev) 118.38 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 132594 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 132653 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGC AAGGAUGACACGCA+A+ CG GAA+ GUUCCA AUUUUU 132654 CCUUGCAGAAGGAUGACACGCAAAUCCGUGAAGCGUUCCAUAUUUUU 132700 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25541,sp|AL731658.20|AL731658 Mouse DNA sequence from clone RP23-329P17 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 280 : 81945 81839 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 55575 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 55634 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 55635 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 55681 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25552,sp|AL731673.8|AL731673 Mouse DNA sequence from clone RP23-452E21 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU hit 281 : 39287 39181 (rev) 126.73 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 94822 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 94881 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA AUUUUU 94882 CCCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU 94928 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25566,sp|AL731695.11|AL731695 Mouse DNA sequence from clone RP23-188M14 on chromosome X ----isReversed: 0 ----hitSequence: AUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGAAUAACAUGCAAACUCGUGAAGCAUUCCAUACUUUC hit 282 : 12187 12293 (fwd) 105.11 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUC :G:A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 12187 AUGCUugcUUCAgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 12246 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAG AU ACA+GCA+A UCG GAA+ +UUCCA A UUU 12247 CCCUGCACAAGAAUAACAUGCAAACUCGUGAAGCAUUCCAUACUUUC 12293 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25567,sp|AL731697.16|AL731697 Mouse DNA sequence from clone RP23-188L7 on chromosome X ----isReversed: 0 ----hitSequence: UCUUUUAAAGAAAUAAAAAAUUGGAAUGAUACAGAGAAGAUUACCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCGUGAACCGUUCCAUAUUUUU hit 283 : 74453 74549 (fwd) 97.43 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 ::: UU :::A +U+ AAAAUUGGAA GAUACAGAGAAGAUUA CAUGGCCCCUG 74453 UCU--UUUA--AAGAAAUAA-AAAAUUGGAAUGAUACAGAGAAGAUUACCAUGGCCCCUG 74507 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CAAGGAUGACACGCA+A+UCG GAA GUUCCA AUUUUU 74508 CACAAGGAUGACACGCAAAUUCGUGAACCGUUCCAUAUUUUU 74549 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25593,sp|AL731728.10|AL731728 Mouse DNA sequence from clone RP24-531N10 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACACAAAUUCGUGAAGCAUUCCAUAUUUUU hit 284 : 18148 18042 (rev) 125.79 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 128588 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 128647 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACAC CA+A+UCG GAA+ +UUCCA AUUUUU 128648 CCCUGCACAAGGAUGACACACAAAUUCGUGAAGCAUUCCAUAUUUUU 128694 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25642,sp|AL731828.22|AL731828 Mouse DNA sequence from clone RP23-50L5 on chromosome X ----isReversed: 1 ----hitSequence: UGCUCAUUUCGGCAGCAAUAUACUAAAAUUGGAACAAUAUAGAAAAGAUUAGCAUGGAACCUGCGUACGGAUGACACUCAAAUUCGUGAAAUGUUCCAUAUUAUA hit 285 : 202936 202832 (rev) 83.17 bits <<<<<..____.>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 ::C: UUCG :G::AU+U+CUAAAAUUGGAAC+AUA AGA AAGAUUAGCAUGG C 25392 UGCUCauUUCGgCAGCAAUAUACUAAAAUUGGAACAAUAUAGAAAAGAUUAGCAUGGAAC 25451 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGCG A GGAUGACAC CA+A+UCG GAAAUGUUCCA AUU U 25452 CUGCGUACGGAUGACACUCAAAUUCGUGAAAUGUUCCAUAUUAUA 25496 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25675,sp|AL732309.9|AL732309 Mouse DNA sequence from clone RP23-132N23 on chromosome 2 ----isReversed: 0 ----hitSequence: CUCCCUUCCAGCACAUAUACUAAAAUUGGAAUAACACAGAGAAGAUUAGCAUGGUCUCCACACAAGGAUGUCACACAAAUUCAUGAACUGUUCCAUAUU hit 286 : 101258 101356 (fwd) 69.72 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 U C UUC G A AU+U+CUAAAAUUGGAA +A ACAGAGAAGAUUAGCAUGG C C 101258 CUCCCUUCCAGCACAUAUACUAAAAUUGGAAUAACACAGAGAAGAUUAGCAUGGUCUCCA 101317 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CAAGGAUG CAC CA+A+UC GAA UGUUCCA U UU 101318 CACAAGGAUGUCACACAAAUUCAUGAACUGUUCCA---UAUU 101356 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25705,sp|AL732400.9|AL732400 Mouse DNA sequence from clone RP23-92K6 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUCCCUUCAGCAGCACACAAACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGUCCUUGCACAAGGAUGACACACAAAUUCAUGAAGCAUUCAAUAUUUUU hit 287 : 113701 113595 (rev) 99.24 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACA + +CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGG 105906 GUGCUcccUUCAgcAGCACACAAACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGU 105965 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGC CAAGGAUGACAC CA+A+UC GAA+ +UUC A AUUUUU 105966 CCUUGCACAAGGAUGACACACAAAUUCAUGAAGCAUUCAAUAUUUUU 106012 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25718,sp|AL732420.13|AL732420 Mouse DNA sequence from clone RP23-84O5 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAUUAGCAUGGCCCCUAUGCAAGGAUGACAUGCAAAUCUGUGAAGCAUUCCAGGUCCUUUU hit 288 : 163904 163799 (rev) 91.42 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGA GAUUAGCAUGGC 27409 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGA---GAUUAGCAUGGC 27465 :::::::::::::::::::::::::::::::::::::::::::..:::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaU..UUUU 102 CCCU GCAAGGAUGACA+GCA+A+ G GAA+ +UUCCA +U UUUU 27466 CCCUAUGCAAGGAUGACAUGCAAAUCUGUGAAGCAUUCCAGGUccUUUU 27514 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25740,sp|AL732460.7|AL732460 Mouse DNA sequence from clone RP23-113I19 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUCACUUCAGCAGCACAUAUACUAAAAUUGAAAUGAUACAGAAAAGAUUAGCAUGGCCCCUGAACAAGGAUGAUAUGCAAAUUCGUGAAGCAUUCCAUAUUUUA hit 289 : 94072 93966 (rev) 104.49 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUG AA GAUACAGA AAGAUUAGCAUGGC 104501 GUGCUcacUUCAgcAGCACAUAUACUAAAAUUGAAAUGAUACAGAAAAGAUUAGCAUGGC 104560 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG CAAGGAUGA A+GCA+A+UCG GAA+ +UUCCA AUUUU 104561 CCCUGAACAAGGAUGAUAUGCAAAUUCGUGAAGCAUUCCAUAUUUUA 104607 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25816,sp|AL732560.11|AL732560 Mouse DNA sequence from clone RP24-209P15 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUCACUUCGGCAACACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACAUGCAAAUUCAUGAAGCGCUCCAUAUUUAA hit 290 : 60362 60468 (fwd) 110.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 60362 GUGCUcacUUCGgcAACACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 60421 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACA+GCA+A+UC GAA+ G UCCA AUUU 60422 CCCUGCACAAGGAUGACAUGCAAAUUCAUGAAGCGCUCCAUAUUUAA 60468 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25830,sp|AL732585.8|AL732585 Mouse DNA sequence from clone RP23-226M2 on chromosome 2 ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUUGUGAAGCAUUCUAUAUAUAU hit 291 : 48781 48675 (rev) 113.92 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 103111 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGC 103170 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+U G GAA+ +UUC A AU U U 103171 CCCUGCGCAAGGAUGACACGCAAAUUUGUGAAGCAUUCUAUAUAUAU 103217 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25906,sp|AL772196.13|AL772196 Mouse DNA sequence from clone RP23-358M21 on chromosome 4 ----isReversed: 1 ----hitSequence: GUGCUCACUACGGCAGCACAUAUAAUAAAAUUGUAAUGAUACAGAGAAGAUUAACAUGUCCCUGCCCAAGGAUGACAUGGAAAUUCAUGAAGCAUUUCCUACUUUU hit 292 : 144857 144752 (rev) 89.00 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+ UAAAAUUG AA GAUACAGAGAAGAUUA CAUG 93160 GUGCUcacUACGgcAGCACAUAUAAUAAAAUUGUAAUGAUACAGAGAAGAUUAACAUGU- 93218 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACA+G A+A+UC GAA+ +UU C+ A UUUU 93219 CCCUGCCCAAGGAUGACAUGGAAAUUCAUGAAGCAUUUCCUACUUUU 93265 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25935,sp|AL772234.5|AL772234 Mouse DNA sequence from clone RP23-413M22 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAGACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCUCCUGCGCAAGGAUGACAUGCAAGUUCGUGAAGUGUUCCAUAUUUUU hit 293 : 50971 51077 (fwd) 120.29 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+ +CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 50971 GUGCUcgcUUCGgcAGCACAUAGACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 51030 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUGCGCAAGGAUGACA+GCA+ +UCG GAA+UGUUCCA AUUUUU 51031 UCCUGCGCAAGGAUGACAUGCAAGUUCGUGAAGUGUUCCAUAUUUUU 51077 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25958,sp|AL772271.11|AL772271 Mouse DNA sequence from clone RP23-17P12 on chromosome 2 ----isReversed: 1 ----hitSequence: GUUCGCUUCUGCAGAACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUAA hit 294 : 8435 8331 (rev) 106.00 bits <<<<<.____..>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc.UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 GU:C UUC G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGCCC 195702 GUUCGcUUCUgcAGAACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCC 195761 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUG GCAAGGAUGACA+GCA+A+UCG GAA+ GUUCCA AUUU 195762 CUGUGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUAA 195806 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25997,sp|AL772324.5|AL772324 Mouse DNA sequence from clone RP23-440O7 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 295 : 127091 127197 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 127091 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 127150 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 127151 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 127197 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26023,sp|AL772364.20|AL772364 Mouse DNA sequence from clone RP23-242C19 on chromosome 11 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCCCAUAUACUAAAAUCGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACAGACAGACAGGUAAAAGAAGCUUUA hit 296 : 102951 103054 (fwd) 84.68 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUCG :G: CAU+U+CUAAAAU GGAAC+AUACAGAGAAGAUUAGCAUGGC 102951 GUGCUcgcUUCGgcAGCCCAUAUACUAAAAUCGGAACAAUACAGAGAAGAUUAGCAUGGC 103010 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC A A GA A++U+ + AA+ UUU 103011 CCCUGCGCAAGGAUGACACAGACA---GACAGGUAAAAGAAGCUUUA 103054 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26031,sp|AL772376.6|AL772376 Mouse DNA sequence from clone RP23-30F6 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAGACUAAAACUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGAAUUACUUGCUGAUUCAUGAAGCAUGAUAUACAUAC hit 297 : 193955 194061 (fwd) 67.43 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+ +CUAAAA UGGAA GAUACAGAGAAGAUUAGCAUGGC 193955 GUGCUcgcUUCAgcAGCACAUAGACUAAAACUGGAAUGAUACAGAGAAGAUUAGCAUGGC 194014 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAG AU AC +GC+ A+UC GAA+ +U A A U 194015 CCCUGCACAAGAAUUACUUGCUGAUUCAUGAAGCAUGAUAUACAUAC 194061 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26112,sp|AL805897.13|AL805897 Mouse DNA sequence from clone RP23-63D8 on chromosome 4 ----isReversed: 0 ----hitSequence: UUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAAUGAUACAGGGAAGAUUAGUAUGGUCCCUGCGCAAGGACAUACAAAUUCGUGAAGCGUUAAAAAAGAAAAAAAAAAGAUGUAUUUAUUUAUU hit 298 : 20946 21072 (fwd) 66.13 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUC :G:A:AU+U+CUAAAAUUGGAA GAUACAG GAAGAUUAG AUGG 20946 UUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAAUGAUACAGGGAAGAUUAGUAUGGU 21005 ::::::::::::::::::::::::::::::::::.......................::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU.......................gUU 92 CCCUGCGCAAG GACA+ CA+A+UCG GAA+ GU+ 21006 CCCUGCGCAAG---GACAUACAAAUUCGUGAAGCguuaaaaaagaaaaaaaaaagauGUA 21062 :::::::::: 93 CCaaaUUUUU 102 A UU UU 21063 UUUAUUUAUU 21072 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26112,sp|AL805897.13|AL805897 Mouse DNA sequence from clone RP23-63D8 on chromosome 4 ----isReversed: 1 ----hitSequence: UGAGAAAAAAGUGCUCAUUUGGAACAAUACAGAGAAGAUUAGCAUGGUCCCUGUGCAAGGAUGAGACGAAAAUUCGUGAAGCGUUCCAUAGUUUU hit 299 : 126120 126026 (rev) 72.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 U G A+A UGCU A UUGGAAC+AUACAGAGAAGAUUAGCAUGG CCCUG 105870 -----UGAG-AAAAAAGUGCUC-AUUUGGAACAAUACAGAGAAGAUUAGCAUGGUCCCUG 105922 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCAAGGAUGA ACG A+A+UCG GAA+ GUUCCA A UUUU 105923 UGCAAGGAUGAGACGAAAAUUCGUGAAGCGUUCCAUAGUUUU 105964 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26124,sp|AL805911.6|AL805911 Mouse DNA sequence from clone RP23-71K8 on chromosome X ----isReversed: 1 ----hitSequence: GCCAUACUCACUUUGGCAACACAUAUAUUAAAAUUUGAACAAUGCAGAGAAGAUUAGCAUGGCCUCUGCACAAGGAUGACAUGCAAAAUCUCAAAGCAUUUGAUAUUUUU hit 300 : 131958 131849 (rev) 76.86 bits <<<<<......____..>>>>>:::::::::::::::::::::::::::::::::::::: 1 GucCc......UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAU 52 G: :: UU G :: :CAU+U+ UAAAAUU GAAC+AU CAGAGAAGAUUAGCAU 25135 GCCAUacucacUUUGgcAACACAUAUAUUAAAAUUUGAACAAUGCAGAGAAGAUUAGCAU 25194 :::::::::::::::::::::::::::::::::::::::::::::::::: 53 GGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GGCC CUGC CAAGGAUGACA+GCA+AAUC AA+ +UU A AUUUUU 25195 GGCCUCUGCACAAGGAUGACAUGCAAAAUCUCAAAGCAUUUGAUAUUUUU 25244 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26193,sp|AL806519.12|AL806519 Mouse DNA sequence from clone RP23-172A2 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCGUUCCAUAUUUUU hit 301 : 25496 25390 (rev) 122.03 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 115024 GUGCUugcUUCAgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 115083 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UC GAA+ GUUCCA AUUUUU 115084 CCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCGUUCCAUAUUUUU 115130 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26290,sp|AL807803.6|AL807803 Mouse DNA sequence from clone RP23-96B14 on chromosome X ----isReversed: 1 ----hitSequence: GUUCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACUAUACAGAGAAGAUUAGCGUGGCCCCAGCACAAAAAUGGCAUGCAAAAUCAUGAAGCAUUUCAUAUAUUU hit 302 : 54404 54298 (rev) 90.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUCG :G ACAU+U+CUAAAAUUGGAAC AUACAGAGAAGAUUAGC UGGC 122608 GUUCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACUAUACAGAGAAGAUUAGCGUGGC 122667 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC GC CAA AUG CA+GCA+AAUC GAA+ +UU CA AU UUU 122668 CCCAGCACAAAAAUGGCAUGCAAAAUCAUGAAGCAUUUCAUAUAUUU 122714 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26292,sp|AL807805.7|AL807805 Mouse DNA sequence from clone RP23-48K5 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUAAAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAAGAGAGACCAGGACUUAAGAGGCAGAGACAGGAGCAUCACUGUGUU hit 303 : 182943 183058 (fwd) 69.56 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUU AAC+AUACAGAGAAGAUUAGCAUGGC 182943 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUAAAACAAUACAGAGAAGAUUAGCAUGGC 183002 ::::::::::::::::::::::::::::::::::..........::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU..........gUUCCaaaUUUUU 102 CCCUGCGCAA GA GA AC A U AGA++ G + CA U UU 183003 CCCUGCGCAAAGA-GAGACCAGGACUUAAGAGGCagagacaggaGCAUCACUGUGUU 183058 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26367,sp|AL808138.26|AL808138 Mouse DNA sequence from clone RP23-84C18 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUAUUU hit 304 : 42490 42595 (fwd) 115.68 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+ +CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 42490 GUGCUcgcUUCAgcAGCACAUA-ACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 42548 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AU UUU 42549 CCCUGCACAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUAUUU 42595 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26381,sp|AL824713.8|AL824713 Mouse DNA sequence from clone RP23-191F15 on chromosome X ----isReversed: 1 ----hitSequence: UGCUCAUUUCGGCAGCAAUAUACUAAAAUUGGAACAAUAUAGAAAAGAUUAGCAUGGAACCUGCGUACGGAUGACACUCAAAUUCGUGAAAUGUUCCAUAUUAUA hit 305 : 26061 25957 (rev) 83.17 bits <<<<<..____.>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 ::C: UUCG :G::AU+U+CUAAAAUUGGAAC+AUA AGA AAGAUUAGCAUGG C 186511 UGCUCauUUCGgCAGCAAUAUACUAAAAUUGGAACAAUAUAGAAAAGAUUAGCAUGGAAC 186570 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGCG A GGAUGACAC CA+A+UCG GAAAUGUUCCA AUU U 186571 CUGCGUACGGAUGACACUCAAAUUCGUGAAAUGUUCCAUAUUAUA 186615 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26417,sp|AL831753.5|AL831753 Mouse DNA sequence from clone RP23-384M14 on chromosome 2 ----isReversed: 1 ----hitSequence: GUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU hit 306 : 155881 155775 (rev) 125.99 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 24693 GUGCUugcUUCAgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 24752 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+U G GAA+UGUUCCA AUUUUU 24753 CCCUGAGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU 24799 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26439,sp|AL831786.7|AL831786 Mouse DNA sequence from clone RP23-177C18 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAACUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCUUCGUGAAGUGUUCCAUAUUUUU hit 307 : 48135 48244 (fwd) 116.49 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAA UGGAACGAUACAGAGAAGAUUAGCAUGGC 48135 GUGCUcgcUUUGgcAGCACAUAUACUAAAACUGGAACGAUACAGAGAAGAUUAGCAUGGC 48194 ::::::::::::::::::::::::::...::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaU...CGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+U CG GAA+UGUUCCA AUUUUU 48195 CCCUGCACAAGGAUGACACGCAAAUUcuuCGUGAAGUGUUCCAUAUUUUU 48244 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26461,sp|AL833788.8|AL833788 Mouse DNA sequence from clone RP23-99E6 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 308 : 73219 73325 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 73219 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 73278 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 73279 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 73325 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26504,sp|AL840629.24|AL840629 Mouse DNA sequence from clone RP23-334A5 on chromosome 4 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 309 : 161106 161000 (rev) 127.95 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 53035 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 53094 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 53095 CCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 53141 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26523,sp|AL844155.4|AL844155 Mouse DNA sequence from clone RP23-163L4 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAACACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGCCACUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 310 : 134256 134362 (fwd) 120.50 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 134256 GUGCUcgcUUCGgcAACACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGC 134315 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 134316 CACUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 134362 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26539,sp|AL844180.6|AL844180 Mouse DNA sequence from clone RP23-403A4 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUGUCUCCAGCAGCACUUAUAUUAAAAUUAAAACAAUACAGGAAAGAUGAGCAUGAUCCCUGCACAAGGAUGGCAUGAAAUCCAUGAAGCAUUCCAUAUUUUA hit 311 : 42010 42115 (fwd) 66.23 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U C :G:AC U+U+ UAAAAUU AAC+AUACAG AAGAU AGCAUG 42010 GUGCUgucUCCAgcAGCACUUAUAUUAAAAUUAAAACAAUACAGGAAAGAUGAGCAUGAU 42069 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUG CA+G A+A+ C GAA+ +UUCCA AUUUU 42070 CCCUGCACAAGGAUGGCAUG-AAAUCCAUGAAGCAUUCCAUAUUUUA 42115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26576,sp|AL844487.3|AL844487 Mouse DNA sequence from clone RP23-162L23 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCCGCACAUAUACUAAAAAAAUUAGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUUGUGAAGCAUUCCAUAAAAAAAAUUU hit 312 : 212455 212569 (fwd) 87.90 bits <<<<<...____..>>>>>::::::...:::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgc...UAAAAUUGGAACgAUACAGAGAAGAUUAGCAU 52 GU:C UUC G:ACAU+U+C AAAAUU GAACGAUACAGAGAAGAUUAGCAU 212455 GUGCUcacUUCAgcCGCACAUAUACuaaAAAAAUUAGAACGAUACAGAGAAGAUUAGCAU 212514 :::::::::::::::::::::::::::::::::::::.....::::::::::::: 53 GGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU.....gUUCCaaaUUUUU 102 GGCCCCUGCGCAAGGAUGACAC CA+A+U G GAA+ +U+ AAA UUU 212515 GGCCCCUGCGCAAGGAUGACACACAAAUUUGUGAAGCauuccAUAAAAAAAAUUU 212569 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26633,sp|AL844582.7|AL844582 Mouse DNA sequence from clone RP23-234C7 on chromosome 2 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 313 : 82112 82006 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 139612 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 139671 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 139672 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 139718 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26634,sp|AL844583.6|AL844583 Mouse DNA sequence from clone RP23-240F13 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUCACUUAGGCAGCAUAUAUACUAAAAUUGGAACUAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACACAAAUUUGUGAAGUGUUCCAUAUUUUU hit 314 : 83158 83052 (rev) 118.23 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UU G :G:A AU+U+CUAAAAUUGGAAC AUACAGAGAAGAUUAGCAUGGC 93713 GUGCUcacUUAGgcAGCAUAUAUACUAAAAUUGGAACUAUACAGAGAAGAUUAGCAUGGC 93772 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACAC CA+A+U G GAA+UGUUCCA AUUUUU 93773 CCCUGCACAAGGAUGACACACAAAUUUGUGAAGUGUUCCAUAUUUUU 93819 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26637,sp|AL844588.17|AL844588 Mouse DNA sequence from clone RP23-244N6 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUCUCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUU hit 315 : 87745 87848 (fwd) 119.49 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 87745 GUGCUcucUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 87804 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA U UU 87805 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCA---UAUU 87848 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26669,sp|AL844856.6|AL844856 Mouse DNA sequence from clone RP23-377G1 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 316 : 130647 130753 (fwd) 133.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 130647 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 130706 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 130707 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 130753 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26695,sp|AL844896.7|AL844896 Mouse DNA sequence from clone RP23-356L21 on chromosome 2 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 317 : 11688 11587 (rev) 112.85 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUG AUACAGAGAAGAUUAGCAUGGC 71516 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUG-----AUACAGAGAAGAUUAGCAUGGC 71570 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 71571 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 71617 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26755,sp|AL845292.4|AL845292 Mouse DNA sequence from clone RP23-386I21 on chromosome 2 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 318 : 164209 164103 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 22399 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 22458 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 22459 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 22505 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26759,sp|AL845297.15|AL845297 Mouse DNA sequence from clone RP23-207P16 on chromosome 2 ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUCGUGAAGUGUUCCAUAUUUUU hit 319 : 24520 24414 (rev) 126.52 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 179122 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 179181 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+UCG GAA+UGUUCCA AUUUUU 179182 CCCUGUGCAAGGAUGACACACAAAUUCGUGAAGUGUUCCAUAUUUUU 179228 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26763,sp|AL845304.4|AL845304 Mouse DNA sequence from clone RP23-184H6 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUCACUUCAGAACCACAUAUACUAAAAUUAGAAUGAUUCAUCGAAGAUUAGCAUGGCCCCUGCCCACGGAUGACAUACAAAUUUAUGAAGUAUUCCAUAUUUUU hit 320 : 105950 105844 (rev) 79.76 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUC : :ACAU+U+CUAAAAUU GAA GAU CA GAAGAUUAGCAUGGC 54116 GUGCUcacUUCAgaACCACAUAUACUAAAAUUAGAAUGAUUCAUCGAAGAUUAGCAUGGC 54175 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CA GGAUGACA+ CA+A+U GAA+U+UUCCA AUUUUU 54176 CCCUGCCCACGGAUGACAUACAAAUUUAUGAAGUAUUCCAUAUUUUU 54222 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26854,sp|AL845505.3|AL845505 Mouse DNA sequence from clone RP23-115D12 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAACACAUACACUAAAAUUGGAACUAUACAAAGAAUAUUACCAUGGCUCCUGCAUAAGGAUGAAAGGCAAAUUUGUGAAGCAUUCCAUAUUAUU hit 321 : 107473 107367 (rev) 82.04 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+++CUAAAAUUGGAAC AUACA AGAA AUUA CAUGGC 15507 GUGCUugcUUCGgcAACACAUACACUAAAAUUGGAACUAUACAAAGAAUAUUACCAUGGC 15566 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUGC AAGGAUGA A GCA+A+U G GAA+ +UUCCA AUU UU 15567 UCCUGCAUAAGGAUGAAAGGCAAAUUUGUGAAGCAUUCCAUAUUAUU 15613 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26860,sp|AL845518.6|AL845518 Mouse DNA sequence from clone RP23-300M9 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAACGACACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACGCUCAAAUUCAUGAAGCAUUCCAUAUAUAUUUU hit 322 : 70059 70168 (fwd) 113.21 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGA ACAGAGAAGAUUAGCAUGGC 70059 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAACGACACAGAGAAGAUUAGCAUGGC 70118 :::::::::::::::::::::::::::::::::::::::::::...:::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaU...UUUU 102 CCCUGCGCAAGGAUGAC C CA+A+UC GAA+ +UUCCA AU UUUU 70119 CCCUGCGCAAGGAUGACGCUCAAAUUCAUGAAGCAUUCCAUAUauaUUUU 70168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26869,sp|AL845528.4|AL845528 Mouse DNA sequence from clone RP23-25P15 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUUGCUUCAGCAGCACAUACACUAAAAUUGGAACAAUACAGAAAAAAUUAACAUGACCCCUGCACAAGAAUGACAAGCAAAUGCAUGAAGCAUUCCAUAUUCUU hit 323 : 105308 105414 (fwd) 81.36 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+++CUAAAAUUGGAAC+AUACAGA AA AUUA CAUG C 105308 GUGCUugcUUCAgcAGCACAUACACUAAAAUUGGAACAAUACAGAAAAAAUUAACAUGAC 105367 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAG AUGACA GCA+A+ C GAA+ +UUCCA AUU UU 105368 CCCUGCACAAGAAUGACAAGCAAAUGCAUGAAGCAUUCCAUAUUCUU 105414 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26898,sp|AL928557.6|AL928557 Mouse DNA sequence from clone RP23-349H7 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGGCAACACAUAUACUAAAAUUGGAAUGAUGUAGAGAAGAGUAGCAUGGCCUGUGCAAGGAUGGCAUGUAGGCUUGUGAAGGGUUCCAUAGUUUU hit 324 : 76908 77012 (fwd) 68.76 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UU G : :ACAU+U+CUAAAAUUGGAA GAU AGAGAAGA UAGCAUGG 76908 GUGCUugcUUUGgcAACACAUAUACUAAAAUUGGAAUGAUGUAGAGAAGAGUAGCAUGG- 76966 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUG GCAAGGAUG CA+G A U G GAA+ GUUCCA A UUUU 76967 -CCUGUGCAAGGAUGGCAUGUAGGCUUGUGAAGGGUUCCAUAGUUUU 77012 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26912,sp|AL928578.6|AL928578 Mouse DNA sequence from clone RP23-33L19 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUGCUAAAAUGGAACGAUACAGAGAUUAGCAUGGCCCCUGAACAAGAAUGAUAUGCAAACUCGGGAAGCGUUCUAUAAUUUC hit 325 : 156621 156723 (fwd) 82.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+UGCUAAAA UGGAACGAUACAGA GAUUAGCAUGGC 156621 GUGCUcacUUCGgcAGCACAUAUGCUAAAA-UGGAACGAUACAGA---GAUUAGCAUGGC 156676 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG CAAG AUGA A+GCA+A UCG GAA+ GUUC A A UUU 156677 CCCUGAACAAGAAUGAUAUGCAAACUCGGGAAGCGUUCUAUAAUUUC 156723 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26961,sp|AL928644.12|AL928644 Mouse DNA sequence from clone RP23-313J15 on chromosome 2 ----isReversed: 0 ----hitSequence: GGGCUCACCUAAGCAGCACAUAUACUUAAACCGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACAAAAAUUCAGGAAGCCUUCAACUUGUUUUU hit 326 : 109574 109682 (fwd) 80.99 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: U G :G: CAU+U+CU AAA GGAACGAUACAGAGAAGAUUAGCAUGGC 109574 GGGCUcaccUAAGcAGCACAUAUACUUAAACCGGAACGAUACAGAGAAGAUUAGCAUGGC 109633 ::::::::::::::::::::::::::::::::::..::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU..gUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC A+A+UC GAA+ + + C +UUUUU 109634 CCCUGAGCAAGGAUGACACAAAAAUUCAGGAAGCcuUCAACUUGUUUUU 109682 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27076,sp|AL928896.6|AL928896 Mouse DNA sequence from clone RP23-42H18 on chromosome 2 ----isReversed: 0 ----hitSequence: GCACAUAUAGGCAGCACAUAUACUAAAACUGGAAUGAUACAGAGAUGAGCAGCAUGGCCCCUGUGCAAGGAUAACACGCAAAUUCGUGAAAUGUUCCAUAUUUUU hit 327 : 79879 79983 (fwd) 88.27 bits <<<<<____...>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG...gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 G: C U G :CAU+U+CUAAAA UGGAA GAUACAGAGA GA AGCAUGGCCC 79879 GCACAUAUAggcAGCACAUAUACUAAAACUGGAAUGAUACAGAGAUGAGCAGCAUGGCCC 79938 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUG GCAAGGAU ACACGCA+A+UCG GAAAUGUUCCA AUUUUU 79939 CUGUGCAAGGAUAACACGCAAAUUCGUGAAAUGUUCCAUAUUUUU 79983 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27104,sp|AL928947.10|AL928947 Mouse DNA sequence from clone RP23-69N1 on chromosome 2 ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAAACUAAAAUUGGAAUGAUACACAGAGGAUUAGCAUGGCCCCUGAGCAAGGAUGACAUGCAAAUUUCUGAACUGUUCCAUAUUUUG hit 328 : 20894 20788 (rev) 89.08 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+ +CUAAAAUUGGAA GAUACA AGA GAUUAGCAUGGC 55747 GUGCUcgcUUUGgcAGCACAUAAACUAAAAUUGGAAUGAUACACAGAGGAUUAGCAUGGC 55806 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+U GAA UGUUCCA AUUUU 55807 CCCUGAGCAAGGAUGACAUGCAAAUUUCUGAACUGUUCCAUAUUUUG 55853 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27142,sp|AL929027.9|AL929027 Mouse DNA sequence from clone RP23-217F24 on chromosome 2 ----isReversed: 1 ----hitSequence: GUGCUCACUUCAGCAGCCCAUAUACUAAAAUUGGAACAAUACAGAGAAGCUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAGUUCAUGAAGUGUUCCAUAUUCUU hit 329 : 6563 6457 (rev) 103.55 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUC :G: CAU+U+CUAAAAUUGGAAC+AUACAGAGAAG UUAGCAUGGC 167720 GUGCUcacUUCAgcAGCCCAUAUACUAAAAUUGGAACAAUACAGAGAAGCUUAGCAUGGC 167779 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+ +UC GAA+UGUUCCA AUU UU 167780 CCCUGUGCAAGGAUGACAUGCAAGUUCAUGAAGUGUUCCAUAUUCUU 167826 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27312,sp|AL929426.8|AL929426 Mouse DNA sequence from clone RP23-471H23 on chromosome 11 ----isReversed: 0 ----hitSequence: AUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCACGAAUAUA hit 330 : 25379 25485 (fwd) 104.09 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 25379 AUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 25438 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UCG GAA+ +UUC + A U U 25439 CCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCACGAAUAUA 25485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27332,sp|AL929451.8|AL929451 Mouse DNA sequence from clone RP23-300D11 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 331 : 11653 11759 (fwd) 131.32 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 11653 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 11712 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 11713 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 11759 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27357,sp|AL929532.12|AL929532 Mouse DNA sequence from clone RP23-138C21 on chromosome 4 ----isReversed: 0 ----hitSequence: GUGCUCACUUAGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGUGUUGCAUAUUUCU hit 332 : 99103 99209 (fwd) 120.71 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 99103 GUGCUcacUUAGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 99162 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+UGUU CA AUUU U 99163 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGUGUUGCAUAUUUCU 99209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27378,sp|AL929572.10|AL929572 Mouse DNA sequence from clone RP23-464H12 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUGGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 333 : 56988 57094 (fwd) 128.62 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAU GGAACGAUACAGAGAAGAUUAGCAUGGC 56988 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUGGGAACGAUACAGAGAAGAUUAGCAUGGC 57047 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 57048 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 57094 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27421,sp|AL935270.6|AL935270 Mouse DNA sequence from clone RP23-391A14 on chromosome 2 ----isReversed: 0 ----hitSequence: GUGCUUUGGCAUCACCUAUACUAAAAUUGGAGUGACACAGAGAAGAUUAGGAUGGCCCCUGUGCAAGGAUGGCGUGCACAGUGAUGGAACAGUCCAUACUUUA hit 334 : 73312 73414 (fwd) 69.72 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 GU: :UU G : :AC U+U+CUAAAAUUGGA GA ACAGAGAAGAUUAG AUGGCCCCU 73312 GUGCUUUGGcAUCACCUAUACUAAAAUUGGAGUGACACAGAGAAGAUUAGGAUGGCCCCU 73371 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 G GCAAGGAUG C +GCA A U G AA + UCCA A UUU 73372 GUGCAAGGAUGGCGUGCACAGUGAUGGAACAGUCCAUACUUUA 73414 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27450,sp|AL953912.8|AL953912 Mouse DNA sequence from clone RP23-184E20 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGGACAAUACAGAGAAGAUUAGCAUGGCCCCUGCAAAAGGAUGACAGGCAAAUCCGUUAAGCAUUCCAUAUUUUU hit 335 : 9600 9494 (rev) 104.85 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGG AC+AUACAGAGAAGAUUAGCAUGGC 10476 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGGACAAUACAGAGAAGAUUAGCAUGGC 10535 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC AAGGAUGACA GCA+A+ CG AA+ +UUCCA AUUUUU 10536 CCCUGCAAAAGGAUGACAGGCAAAUCCGUUAAGCAUUCCAUAUUUUU 10582 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27470,sp|AL954321.8|AL954321 Mouse DNA sequence from clone RP23-407M22 on chromosome 4 ----isReversed: 1 ----hitSequence: AUGCUUAGGCAACACAUAUACUAAAAUUGGAACAACACAGAGAAAAUUAGCAGGGCCCCUGUAUAAGGAUGAUAUGCAAGUUCAUGAAGCCUUCCAUAUU hit 336 : 47005 46906 (rev) 71.11 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U: :U G : :A:AU+U+CUAAAAUUGGAAC+A ACAGAGAA AUUAGCA GGCCCCU 18320 AUGCUUAGGcAACACAUAUACUAAAAUUGGAACAACACAGAGAAAAUUAGCAGGGCCCCU 18379 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 G AAGGAUGA A+GCA+ +UC GAA+ UUCCA U UU 18380 GUAUAAGGAUGAUAUGCAAGUUCAUGAAGCCUUCCA---UAUU 18419 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27480,sp|AL954348.8|AL954348 Mouse DNA sequence from clone RP23-145N17 on chromosome X ----isReversed: 1 ----hitSequence: GUGCUUUCUUCAGCAGUACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUCGCAUGGCCUCCACACAGGUAUAACAUACAAGUUCGUGAAGUACUCCAUACUUUU hit 337 : 58238 58132 (rev) 72.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUC :G ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUU GCAUGGC 58303 GUGCUuucUUCAgcAGUACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUCGCAUGGC 58362 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C C C CA G AU ACA+ CA+ +UCG GAA+U+ UCCA A UUUU 58363 CUCCACACAGGUAUAACAUACAAGUUCGUGAAGUACUCCAUACUUUU 58409 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27486,sp|AL954362.8|AL954362 Mouse DNA sequence from clone RP23-345L22 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGGCAGCACAUAUACUAAAAUUCGAAUGAUACAGAGAAGACUAGCAUGGCCACUGAACAAGGAUGACAUGAAAAUUUGUGAAGGGGUAUCAAUGACUACAUUGCCUGCCUUU hit 338 : 137392 137513 (fwd) 78.44 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUU GAA GAUACAGAGAAGA UAGCAUGGC 137392 GUGCUugcUUUGgcAGCACAUAUACUAAAAUUCGAAUGAUACAGAGAAGACUAGCAUGGC 137451 ::::::::::::::::::::::::::::::::::...............::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU...............gUUCCaaaUUU 100 C CUG CAAGGAUGACA+G A+A+U G GAA+ +UU C+ + U 137452 CACUGAACAAGGAUGACAUGAAAAUUUGUGAAGGgguaucaaugacuacAUUGCCUGCCU 137511 :: 101 UU 102 UU 137512 UU 137513 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #30281,sp|AY115108.1|AY115108 Mus musculus glucocerebrosidase precursor (Gba) and metaxin genes, complete cds; and thrombospondin 3 gene, partial cds. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAACACAUAUACUAAAAUUGGAACAAUACAGAAAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 339 : 465 359 (rev) 122.93 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGAAC+AUACAGA AAGAUUAGCAUGGC 16043 GUGCUcgcUUCGgcAACACAUAUACUAAAAUUGGAACAAUACAGAAAAGAUUAGCAUGGC 16102 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 16103 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 16149 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #48674,sp|BC050105.1|BC050105 Mus musculus similar to TRRAP protein, mRNA (cDNA clone MGC:60983 IMAGE:30014889), complete cds. ----isReversed: 0 ----hitSequence: CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 340 : 1 83 (fwd) 88.39 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 -------------------CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 41 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 42 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 83 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51232,sp|BX004977.8|BX004977 Mouse DNA sequence from clone RP23-278J5 on chromosome X ----isReversed: 0 ----hitSequence: GUACUCACUUUGGCAGCACAUAUACUAAAAUUGGAAGGAUUAGAAGAUGAGCAUGGCCUCUGUGCAAGGAUGACACACAAAUUCAUGAAGUGUUCCAUAUUUUU hit 341 : 78327 78430 (fwd) 80.78 bits <<<<<...____..>>>>>::::::::::::::::::::::::.:::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACA.GAGAAGAUUAGCAUGG 54 GU C: UU G :G ACAU+U+CUAAAAUUGGAA GAU AGAAGAU AGCAUGG 78327 GUACUcacUUUGgcAGCACAUAUACUAAAAUUGGAAGGAU---u-AGAAGAUGAGCAUGG 78382 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC CUG GCAAGGAUGACAC CA+A+UC GAA+UGUUCCA AUUUUU 78383 CCUCUGUGCAAGGAUGACACACAAAUUCAUGAAGUGUUCCAUAUUUUU 78430 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51331,sp|BX119970.6|BX119970 Mouse DNA sequence from clone RP23-124I6 on chromosome X ----isReversed: 1 ----hitSequence: AUCCUGUGAAACUCAGCAGCAUAUAUACUAAAAUUGGAACGAUACGGAGAAGAUUAGUAUGUCCCCUGUGCAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU hit 342 : 39030 38921 (rev) 96.37 bits <<<<<.......____.>>>>>:::::::::::::::::::::::::::::::::::::: 1 GucCc.......UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAU 52 :U C: U G :G A:AU+U+CUAAAAUUGGAACGAUAC GAGAAGAUUAG AU 31629 AUCCUgugaaacUCAGcAGCAUAUAUACUAAAAUUGGAACGAUACGGAGAAGAUUAGUAU 31688 :::::::::::::::::::::::::::::::::::::::::::::::::: 53 GGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 G CCCCUG GCAAGGAUGACACGCA+A+UC GAA+ GUUCCA AUUUUU 31689 GUCCCCUGUGCAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU 31738 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51334,sp|BX119986.7|BX119986 Mouse DNA sequence from clone RP23-440J5 on chromosome X ----isReversed: 1 ----hitSequence: AUCCUGUGAAACUCAGCAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUUUUCAAGGAUGACAUCGAAAUUCGUGAAGCAUUCUAUAUUUUU hit 343 : 166696 166587 (rev) 93.98 bits <<<<<.......____.>>>>>:::::::::::::::::::::::::::::::::::::: 1 GucCc.......UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAU 52 :U C: U G :G A:AU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAU 30242 AUCCUgugaaacUCAGcAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAU 30301 :::::::::::::::::::::::::::::::::::::::::::::::::: 53 GGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GGCCCCU CAAGGAUGACA+ A+A+UCG GAA+ +UUC A AUUUUU 30302 GGCCCCUUUUCAAGGAUGACAUCGAAAUUCGUGAAGCAUUCUAUAUUUUU 30351 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51349,sp|BX255277.5|BX255277 Mouse DNA sequence from clone RP23-478B14 on chromosome 11 ----isReversed: 1 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACGAUUCAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 344 : 101205 101099 (rev) 128.62 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAU CAGAGAAGAUUAGCAUGGC 68561 GUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACGAUUCAGAGAAGAUUAGCAUGGC 68620 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 68621 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 68667 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51402,sp|BX293555.7|BX293555 Mouse DNA sequence from clone RP23-202M10 on chromosome 2 ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGACAGCACAUAUACUAAAAUUGGAAUGACACAGAGAAGAUUAGCAUGGCCCCUGCUCAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU hit 345 : 50882 50776 (rev) 113.00 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GA ACAGAGAAGAUUAGCAUGGC 141273 GUGCUugcUUCGacAGCACAUAUACUAAAAUUGGAAUGACACAGAGAAGAUUAGCAUGGC 141332 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGG UGACA+GCA+A+UC GAA+ +UUCCA AUUUUU 141333 CCCUGCUCAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU 141379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51526,sp|BX465196.10|BX465196 Mouse DNA sequence from clone RP23-459K15 on chromosome X ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGCUUGCUAAGGAGAGAGCUGGGCUUUCCAAGUUACCUGAUUUA hit 346 : 175280 175393 (fwd) 71.55 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 175280 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 175339 ::::::::::::::::::::::::::::::::::...........::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU...........gUUCCaaaUUUUU 102 CCCUGCGC A G U +GC++A GAGA+ U GUU C+ + UUU 175340 CCCUGCGCGAAGCU----UGCUAAGGAGAGAGCUgggcuuuccaaGUUACCUGAUUUA 175393 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51616,sp|AL713838.1|CNS07YOS Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 278H24 of library Caltech CITB-BAC from chromosom ----isReversed: 0 ----hitSequence: GCGCUUGCUUUGGCAGCACAUAGACUAAAAUUGGAAUGCUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCAUUCCAUAUUUUU hit 347 : 116457 116563 (fwd) 103.93 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G::C: UU G :G::CAU+ +CUAAAAUUGGAA G UACAGAGAAGAUUAGCAUGGC 116457 GCGCUugcUUUGgcAGCACAUAGACUAAAAUUGGAAUGCUACAGAGAAGAUUAGCAUGGC 116516 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+U G GAA+ +UUCCA AUUUUU 116517 CCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCAUUCCAUAUUUUU 116563 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51620,sp|AL713880.1|CNS07YOW Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 366M1 of library Caltech CITB-BAC from chromosome ----isReversed: 1 ----hitSequence: GCGCUUGCUUUGGCAGCACAUAGACUAAAAUUGGAAUGCUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCAUUCCAUAUUUUU hit 348 : 106057 105951 (rev) 103.93 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G::C: UU G :G::CAU+ +CUAAAAUUGGAA G UACAGAGAAGAUUAGCAUGGC 5646 GCGCUugcUUUGgcAGCACAUAGACUAAAAUUGGAAUGCUACAGAGAAGAUUAGCAUGGC 5705 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+U G GAA+ +UUCCA AUUUUU 5706 CCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCAUUCCAUAUUUUU 5752 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #51627,sp|AL807402.1|CNS08CA6 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 437H9 of library RPCI-23 from chromosome 11 of st ----isReversed: 0 ----hitSequence: GUGCUUGCUUCCGCAGCACAUAUGCUAAAAUUGGCAUGACACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAGUUUU hit 349 : 163025 163131 (fwd) 108.15 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+UGCUAAAAUUGG A GA ACAGAGAAGAUUAGCAUGGC 163025 GUGCUugcuUCCGcAGCACAUAUGCUAAAAUUGGCAUGACACAGAGAAGAUUAGCAUGGC 163084 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA A UUUU 163085 CCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAGUUUU 163131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #56677,sp|D82019.1|MMBA Mus musculus Bsg gene for basigin, complete cds, exons 1-7. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGAAAAUUCGUGAAGCCUUUAAUAUU hit 350 : 1695 1592 (rev) 109.89 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 10069 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 10128 ::::::::::::::::::::::::::::::::::.::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU.gUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACG A+A+UCG GAA+ +UU U UU 10129 CCCUGCGCAAGGAUGACACGAAAAUUCGUGAAGCcUUUAA----UAUU 10172 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #73431,sp|AJ400878.1|MMU400878 Mus musculus Ascl3 gene, Cegp1 gene, D7H11orf14 gene, D7H11orf15 gene, D7H11orf16 gene and C11orf17 gene ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 351 : 111851 111957 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 111851 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 111910 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 111911 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 111957 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #75705,sp|V00853.1|MMU6RN1 Genomic locus homologous to small nuclear RNA U6 in mouse. Probably contains a gene for U6. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG hit 352 : 281 387 (fwd) 128.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 281 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 340 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUU 341 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG 387 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #75706,sp|V00854.1|MMU6RN2 Genomic locus homologous to small nuclear RNA U6 in mouse. Probably contains a pseudogene. ----isReversed: 0 ----hitSequence: GUGCUUCGCUUCCGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACGUGCAAAUUCAUGAAGCGUUUACAUAUUUU hit 353 : 199 306 (fwd) 117.22 bits <<<<<.....____.>>>>>:::::::::::::::::::::::::::::::::::::::: 1 GucCc.....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGG 54 GU:C: U CG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG 199 GUGCUucgcuUCCGcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG 258 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCCUGCGCAAGGAUGAC +GCA+A+UC GAA+ GUU +A UUUU 259 CCCCUGCGCAAGGAUGACGUGCAAAUUCAUGAAGCGUUUACAUAUUUU 306 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #75707,sp|V00855.1|MMU6RN3 Genomic locus homologous to small nuclear RNA U6 in mouse. Probably contains a pseudogene. ----isReversed: 0 ----hitSequence: GUGCUAGCUUCAGCAGCACAUACACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCCGUGCAAGGAUGACAUGCAAAUUCAUGAUGUGUUCCAUAUUUUU hit 354 : 152 258 (fwd) 116.72 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+++CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 152 GUGCUagcUUCAgcAGCACAUACACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 211 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC G GCAAGGAUGACA+GCA+A+UC GA +UGUUCCA AUUUUU 212 CCCCGUGCAAGGAUGACAUGCAAAUUCAUGAUGUGUUCCAUAUUUUU 258 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #75708,sp|X06980.1|MMU6SNR Mouse U6 RNA gene ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG hit 355 : 316 422 (fwd) 128.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 316 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 375 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUU 376 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG 422 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #76726,sp|M10329.1|MMUR48S Mouse 4.8S U6 small nuclear RNA. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 356 : 1 108 (fwd) 127.20 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::.:::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAU.UAGCAUGG 54 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAU UAGCAUGG 1 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUuUAGCAUGG 60 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 61 CCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 108 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #771,sp|AB009051.1|AB009051 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJH22. ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 357 : 16090 16192 (fwd) 141.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 16090 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 16149 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 16150 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 16192 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #854,sp|AB010698.1|AB010698 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12. ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCUGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 358 : 46416 46518 (fwd) 142.20 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUCUG UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 46416 GUCCCUUCGGGGACAUCUGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 46475 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 46476 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 46518 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #2295,sp|AB023038.1|AB023038 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIE1. ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 359 : 79549 79651 (fwd) 141.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 79549 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 79608 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 79609 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 79651 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #2816,sp|AB028610.1|AB028610 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MCP4. ----isReversed: 0 ----hitSequence: GUCCCUUAGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 360 : 25224 25326 (fwd) 138.10 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUU GGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 25224 GUCCCUUAGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 25283 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 25284 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 25326 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #8675,sp|AC005275.1|AC005275 Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM, complete sequence. ----isReversed: 1 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 361 : 115896 115794 (rev) 141.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 20440 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 20499 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 20500 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 20542 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #8758,sp|AC006248.4|AC006248 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence. ----isReversed: 0 ----hitSequence: GUCCCCAAACCUUUGGGGACAUCCGAUAAAAUUGGGACGAUACAGAGAAGAUUAGCAUGGCUUCUGCGCAAGGAUGACACGUAUAAGUCAGAGAAAUGUUAUAAAAAAUUUU hit 362 : 26300 26411 (fwd) 94.27 bits <<<<<......____>>>>>:::::::::::::::::::::::::::::::::::::::: 1 GucCc......UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGG 54 GUCCC UU GGGGACAUC+G UAAAAUUGG ACGAUACAGAGAAGAUUAGCAUGG 26300 GUCCCcaaaccUUUGGGGACAUCCGAUAAAAUUGGGACGAUACAGAGAAGAUUAGCAUGG 26359 ::::::::::::::::::::::::::.:.::::::::..::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAa.U.CGAGAaaU..gUUCCaaaUUUUU 102 C CUGCGCAAGGAUGACACG AUAA U GAGAAAU + U AAA UUUU 26360 CUUCUGCGCAAGGAUGACACGUAUAAgUcAGAGAAAUguUAUAAAAAAUUUU 26411 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #8950,sp|AC008016.2|AC008016 Arabidopsis thaliana chromosome 1 BAC F6D8 sequence, complete sequence. ----isReversed: 1 ----hitSequence: GUUCCUUCGGGGUCAUCCGAUAAAAUUGAAACGAUACAAAGAAGAUUACCAUGGUUCCUACCCAAGGAUAACACGCAUAAAUAAAAAAAUGGUCCAAAUCUAA hit 363 : 53083 52981 (rev) 69.42 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G :CCUUCGGG: CAUC+G UAAAAUUG AACGAUACA AGAAGAUUA CAUGG CCU 64655 GUUCCUUCGGGGUCAUCCGAUAAAAUUGAAACGAUACAAAGAAGAUUACCAUGGUUCCUA 64714 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 C CAAGGAU ACACGCAUAA+ A AAAUG UCCAAAU U 64715 CCCAAGGAUAACACGCAUAAAuAAAAAAAUGGUCCAAAUCUAA 64757 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9104,sp|AC018748.3|AC018748 Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete sequence. ----isReversed: 0 ----hitSequence: GAGACUGUCACCUUCACUAAAGUUGGAACGAUACAGAGAAUAUUAGCAUGACCCCUGUGCAACGUUGACACCCUUUACUCGAUAAUUGGUCUAAUUUUUU hit 364 : 74204 74303 (fwd) 69.66 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G ::C U G:: C U ++CUAAA UUGGAACGAUACAGAGAA AUUAGCAUG CCCCUG 74204 GAGAC-U--GUCACCUUCACUAAAGUUGGAACGAUACAGAGAAUAUUAGCAUGACCCCUG 74260 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 GCAA G UGACAC C+U A CGA AA UG UC AA UUUUU 74261 UGCAACGUUGACACCCUUUACuCGAUAAUUGGUCUAAUUUUUU 74303 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9341,sp|AC079128.2|AC079128 Oryza sativa chromosome 10 clone OSJNBa0056A20, complete sequence. ----isReversed: 0 ----hitSequence: GUCUCUUCCGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAAAUUAGCAUGGCCCUUGCACAACGAUGACACGCACAAAUCGAGAAAUGGUCUAAAUUUUU hit 365 : 14366 14468 (fwd) 111.03 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC:CUUC G:GACAUC+G UAAAAUUGGAACGAUACAGAGAA AUUAGCAUGGCCC UG 14366 GUCUCUUCCGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAAAUUAGCAUGGCCCUUG 14425 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 C CAA GAUGACACGCA AA+ CGAGAAAUG UC AAAUUUUU 14426 CACAACGAUGACACGCACAAAuCGAGAAAUGGUCUAAAUUUUU 14468 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9495,sp|AC091787.6|AC091787 Oryza sativa chromosome 3 BAC OSJNBa0087G11 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: GUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 366 : 91952 91850 (rev) 136.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC:CUUCGG:GACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 77777 GUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 77836 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 77837 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 77879 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9735,sp|AC124959.11|AC124959 Medicago truncatula clone mth2-23l11, complete sequence. ----isReversed: 0 ----hitSequence: GUACAAACAGAAAAUCUAUAUUCGGAUGUCCCUCUGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCACCCGGCGUAAGGAUGGCAAGCAUAAAUCGAGAAAUGGUUCACAAGCAAAAUCUAUUGUU hit 367 : 72289 72420 (fwd) 77.26 bits <<<<<...............____..>>>>>::::::::::::::::::::::::::::: 1 GucCc...............UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAA 43 G :C: UUCG :G: C UCUG UAAAAUUGGAACGAUACAGAGAA 72289 GUACAaacagaaaaucuauaUUCGgaUGUCCCUCUGAUAAAAUUGGAACGAUACAGAGAA 72348 ::::::::::::.::::::::::::::::::::::::::.::::::::...........: 44 GAUUAGCAUGGC.CCCUGCGCAAGGAUGACACGcauAaU.CGAGAaaU...........g 90 GAUUAGCAUGGC CCC GCG AAGGAUG CA GCAUAA+ CGAGAAAU + 72349 GAUUAGCAUGGCaCCCGGCGUAAGGAUGGCAAGCAUAAAuCGAGAAAUgguucacaagcA 72408 :::::::::::: 91 UUCCaaaUUUUU 102 + + AUU UU 72409 AAAUCUAUUGUU 72420 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9735,sp|AC124959.11|AC124959 Medicago truncatula clone mth2-23l11, complete sequence. ----isReversed: 0 ----hitSequence: GUACAAACAGAAAAUCUAUAUUCGGAUGUCCCUCUGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCACCCGGCGUAAGGAUGGCAAGCAUACAUCGUGAAAUGGUUCACAAGCAAAAUCUAUUGUU hit 368 : 77896 78027 (fwd) 73.14 bits <<<<<...............____..>>>>>::::::::::::::::::::::::::::: 1 GucCc...............UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAA 43 G :C: UUCG :G: C UCUG UAAAAUUGGAACGAUACAGAGAA 77896 GUACAaacagaaaaucuauaUUCGgaUGUCCCUCUGAUAAAAUUGGAACGAUACAGAGAA 77955 ::::::::::::.::::::::::::::::::::::::::.::::::::...........: 44 GAUUAGCAUGGC.CCCUGCGCAAGGAUGACACGcauAaU.CGAGAaaU...........g 90 GAUUAGCAUGGC CCC GCG AAGGAUG CA GCAUA + CG GAAAU + 77956 GAUUAGCAUGGCaCCCGGCGUAAGGAUGGCAAGCAUACAuCGUGAAAUgguucacaagcA 78015 :::::::::::: 91 UUCCaaaUUUUU 102 + + AUU UU 78016 AAAUCUAUUGUU 78027 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9790,sp|AC131967.1|AC131967 Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09, complete sequence. ----isReversed: 0 ----hitSequence: GUCUCUUCCGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAAAUUAGCAUGGCCCUUGCACAACGAUGACACGCACAAAUCGAGAAAUGGUCUAAAUUUUU hit 369 : 108547 108649 (fwd) 111.03 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC:CUUC G:GACAUC+G UAAAAUUGGAACGAUACAGAGAA AUUAGCAUGGCCC UG 108547 GUCUCUUCCGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAAAUUAGCAUGGCCCUUG 108606 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 C CAA GAUGACACGCA AA+ CGAGAAAUG UC AAAUUUUU 108607 CACAACGAUGACACGCACAAAuCGAGAAAUGGUCUAAAUUUUU 108649 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9859,sp|AC135594.4|AC135594 Oryza sativa chromosome 3 BAC clone OSJNBa0024F18, complete sequence. ----isReversed: 0 ----hitSequence: GUCUCUUCGAAAACAUCCGAUAAAAUUGGAACGAUACAGAUAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGUACAAAUCGAGAAAUGGUCCAAAUUUUU hit 370 : 148481 148583 (fwd) 121.18 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU : UUCG : ACAUC+G UAAAAUUGGAACGAUACAGA AAGAUUAGCAUGGCCCCUG 148481 GUCUCUUCGAAAACAUCCGAUAAAAUUGGAACGAUACAGAUAAGAUUAGCAUGGCCCCUG 148540 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACG A AA+ CGAGAAAUG UCCAAAUUUUU 148541 CGCAAGGAUGACACGUACAAAuCGAGAAAUGGUCCAAAUUUUU 148583 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9883,sp|AC137507.3|AC137507 Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: GUCUCUUCGAAAACAUCCGAUAAAAUUGGAACGAUACAGAUAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGUACAAAUCGAGAAAUGGUCCAAAUUUUU hit 371 : 96128 96026 (rev) 121.18 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU : UUCG : ACAUC+G UAAAAUUGGAACGAUACAGA AAGAUUAGCAUGGCCCCUG 30735 GUCUCUUCGAAAACAUCCGAUAAAAUUGGAACGAUACAGAUAAGAUUAGCAUGGCCCCUG 30794 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACG A AA+ CGAGAAAUG UCCAAAUUUUU 30795 CGCAAGGAUGACACGUACAAAuCGAGAAAUGGUCCAAAUUUUU 30837 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #10331,sp|AE017051.1|AE017051 Oryza sativa (japonica cultivar-group) chromosome 10, section 5 of 77 of the complete sequence. ----isReversed: 0 ----hitSequence: GUCUCUUCCGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAAAUUAGCAUGGCCCUUGCACAACGAUGACACGCACAAAUCGAGAAAUGGUCUAAAUUUUU hit 372 : 294046 294148 (fwd) 111.03 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC:CUUC G:GACAUC+G UAAAAUUGGAACGAUACAGAGAA AUUAGCAUGGCCC UG 294046 GUCUCUUCCGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAAAUUAGCAUGGCCCUUG 294105 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 C CAA GAUGACACGCA AA+ CGAGAAAUG UC AAAUUUUU 294106 CACAACGAUGACACGCACAAAuCGAGAAAUGGUCUAAAUUUUU 294148 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #69428,sp|AK059727.1|AK059727 Oryza sativa (japonica cultivar-group) cDNA clone:006-201-C12, full insert sequence. ----isReversed: 0 ----hitSequence: GUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAACAAAGAUUAGCAUGGCCACUACGCAAGGAUGACACGCACAAAUGGAGAAAUAAUCCAAAUUUUU hit 373 : 897 999 (fwd) 101.73 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC:CUUCGG:GACAUC+G UAAAAUUGGAACGAUACA AAGAUUAGCAUGGCC CU 897 GUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAACAAAGAUUAGCAUGGCCACUA 956 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ GAGAAAU+ UCCAAAUUUUU 957 CGCAAGGAUGACACGCACAAAuGGAGAAAUAAUCCAAAUUUUU 999 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #99364,sp|AP003703.2|AP003703 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06. ----isReversed: 0 ----hitSequence: AUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 374 : 68823 68925 (fwd) 132.57 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :UC:CUUCGG:GA:AUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 68823 AUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 68882 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 68883 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 68925 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101923,sp|AL161571.2|ATCHRIV67 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 67 ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 375 : 92692 92794 (fwd) 141.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 92692 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 92751 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 92752 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 92794 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101935,sp|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78 ----isReversed: 1 ----hitSequence: GUCCCUUCGUGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGUGCCCUGCGCAAGGAUGACACGCUUAAAUCGAGAUAUGAUCCAAAUUUAU hit 376 : 187012 186910 (rev) 122.39 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCC UUCG GGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUG CCCUG 11658 GUCCCUUCGUGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGUGCCCUG 11717 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGC+UAA+ CGAGA AUG UCCAAAUUU U 11718 CGCAAGGAUGACACGCUUAAAuCGAGAUAUGAUCCAAAUUUAU 11760 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101937,sp|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8 ----isReversed: 1 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 377 : 134268 134166 (rev) 141.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 61162 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 61221 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 61222 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 61264 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101941,sp|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83 ----isReversed: 0 ----hitSequence: GUCCCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCUGCGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 378 : 19447 19543 (fwd) 104.44 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC CUUCGG GACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG CCCUG 19447 GUCCCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG-CCCUG 19505 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 C GAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 19506 C-----GAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 19543 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102247,sp|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project) ----isReversed: 1 ----hitSequence: GUCCCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCUGCGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 379 : 83904 83808 (rev) 104.44 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC CUUCGG GACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG CCCUG 2807 GUCCCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG-CCCUG 2865 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 C GAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 2866 C-----GAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 2903 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102292,sp|AL035525.1|ATF4I10 Arabidopsis thaliana DNA chromosome 4, BAC clone F4I10 (ESSA project) ----isReversed: 1 ----hitSequence: GUCCCUUCGUGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGUGCCCUGCGCAAGGAUGACACGCUUAAAUCGAGAUAUGAUCCAAAUUUAU hit 380 : 39551 39449 (rev) 122.39 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCC UUCG GGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUG CCCUG 72326 GUCCCUUCGUGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGUGCCCUG 72385 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGC+UAA+ CGAGA AUG UCCAAAUUU U 72386 CGCAAGGAUGACACGCUUAAAuCGAGAUAUGAUCCAAAUUUAU 72428 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119251,sp|X52527.1|ATSNU61 Arabidopsis thaliana U6-1 snRNA gene ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 381 : 306 408 (fwd) 141.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 306 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 365 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 366 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 408 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119252,sp|X52528.1|ATSNU626 Arabidopsis thaliana U6-26 snRNA gene ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 382 : 449 551 (fwd) 141.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 449 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 508 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 509 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 551 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119253,sp|X52529.1|ATSNU629 Arabidopsis thaliana U6-29 snRNA gene ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 383 : 320 422 (fwd) 141.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 320 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 379 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 380 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 422 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119291,sp|AL035522.1|ATT12J5 Arabidopsis thaliana DNA chromosome 4, BAC clone T12J5 (ESSAII project) ----isReversed: 0 ----hitSequence: GUCCCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCUGCGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 384 : 79689 79785 (fwd) 104.44 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC CUUCGG GACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG CCCUG 79689 GUCCCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGG-CCCUG 79747 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 C GAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 79748 C-----GAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 79785 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119361,sp|AL035602.1|ATT29A15 Arabidopsis thaliana DNA chromosome 4, BAC clone T29A15 (ESSA project) ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 385 : 31982 32084 (fwd) 141.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 31982 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 32041 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 32042 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 32084 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #178082,sp|BT008703.1|BT008703 Arabidopsis thaliana clone RAFL17-29-B11 (R50554) unknown protein (At3g13855) mRNA, complete cds. ----isReversed: 0 ----hitSequence: CCUUAGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUCCAAAUUUUU hit 386 : 1 100 (fwd) 122.45 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 CC: U G:GGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 --CCU-UAGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 57 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG UCCAAAUUUUU 58 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUCCAAAUUUUU 100 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #181845,sp|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of ----isReversed: 1 ----hitSequence: GUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 387 : 32657 32555 (rev) 136.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC:CUUCGG:GACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 132777 GUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 132836 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 132837 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 132879 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #182776,sp|X71486.1|CRRNAU6 C.reinhardtii U6 snRNA ----isReversed: 0 ----hitSequence: GUGCUUCGGCACAACUGUUAAAAUUGGAAAAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAAUCGAGAAAUGGUUCCAAAUUUU hit 388 : 1 101 (fwd) 122.97 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C UUCG G:ACA CUG UAAAAUUGGAA +AUACAGAGAAGAUUAGCAUGGCCCCUG 1 GUGC-UUCG-GCACAACUGUUAAAAUUGGAAAAAUACAGAGAAGAUUAGCAUGGCCCCUG 58 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAA+ CGAGAAAUG U C+AA UUUU 59 CGCAAGGAUGACACGCAUAAAuCGAGAAAUGGUUCCAAAUUUU 101 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #192068,sp|X68449.1|LE1PS L.esculentum U6 snRNA pseudogene (LeU6.1ps) ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACGUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 389 : 334 436 (fwd) 134.47 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGAC UC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 334 GUCCCUUCGGGGACGUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 393 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 394 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 436 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #192089,sp|X68448.1|LE2PS L.esculentum U6 snRNA pseudogene (LeU6.2ps) ----isReversed: 0 ----hitSequence: GUCCCUUCGGGAACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUUCAAAUUUUA hit 390 : 334 436 (fwd) 130.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU CCUUCGGG ACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 334 GUCCCUUCGGGAACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 393 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG U CAAAUUUU 394 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUUCAAAUUUUA 436 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #192899,sp|X51447.1|LEU6SNR Tomato U6 small nuclear RNA gene ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAAUUUU hit 391 : 262 364 (fwd) 137.59 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 262 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 321 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAA UUUU 322 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAAUUUU 364 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #198744,sp|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08. ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 392 : 10016 10118 (fwd) 139.97 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 10016 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 10075 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 10076 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 10118 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #201148,sp|U58510.1|PMU58510 Chlorarachnion CCMP621 small subunit ribosomal RNA, 5.8S ribosomal RNA, and large subunit ribosomal RNA genes, complete sequenc ----isReversed: 0 ----hitSequence: GCGUUCACGCAUCUUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAAUCCGAGAUUAGGUUCCUUUAUUU hit 393 : 7471 7568 (fwd) 105.06 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G:: UUC ::CAUCU AAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 7471 GCG--UUCA--CGCAUCUUU-AAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 7525 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCAUAAU CGAGA G U C+ U UUU 7526 CGCAAGGAUGACACGCAUAAUcCGAGAUUAGGUUCCUUUAUUU 7568 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #204676,sp|S83742.1|S83742 U6 small nuclear RNA {coding region} [potatoes, Genomic, 102 nt]. ----isReversed: 0 ----hitSequence: CUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUU hit 394 : 1 102 (fwd) 128.77 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 UCCCUUCGGGGA AUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 CUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUU 61 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUU- 102 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #207650,sp|Z17282.1|STEB1701 S.tuberosum gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 395 : 96 198 (fwd) 139.97 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 96 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 155 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 156 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 198 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #207651,sp|Z17283.1|STEB1718 S.tuberosum gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 396 : 95 197 (fwd) 139.97 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 95 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 154 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 155 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 197 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #207652,sp|Z17284.1|STEB1721 S.tuberosum gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 397 : 96 198 (fwd) 139.97 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 96 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 155 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 156 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 198 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #207653,sp|Z17285.1|STEB1722 S.tuberosum DNA for U6 small nuclear RNA promoter region ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 398 : 96 198 (fwd) 139.97 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 96 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 155 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 156 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 198 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #207654,sp|Z17286.1|STEB1725 S.tuberosum gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 399 : 97 199 (fwd) 139.97 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 97 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 156 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 157 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #207655,sp|Z17287.1|STEB1732 S.tuberosum gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAACAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 400 : 97 199 (fwd) 134.73 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUA CAUGGCCCCUG 97 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAACAUGGCCCCUG 156 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 157 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #207673,sp|Z17301.1|STFB1005 S.tuberosum gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 401 : 124 226 (fwd) 139.97 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 124 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 183 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 184 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 226 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #207674,sp|Z17302.1|STFB1006 S.tuberosum U6 small nuclear RNA pseudogene ----isReversed: 0 ----hitSequence: ACAGUCUAGCUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 402 : 112 209 (fwd) 110.51 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 ::: UC ::: UC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 112 ACA--GUC---UAGCUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 166 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 167 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #208169,sp|X60506.1|STU6SNRN S.tuberosum U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 403 : 390 492 (fwd) 139.97 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUCCCUUCGGGGACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 390 GUCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 449 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 450 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 492 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #209248,sp|X63066.1|TAU6SNRA T.aestivum U6 snRNA gene ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 404 : 363 465 (fwd) 137.94 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G:CCCUUCGGGG:CAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 363 GCCCCUUCGGGGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 422 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 423 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 465 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #212191,sp|X04788.1|VFSNU6R Broad bean U6 small nuclear RNA ----isReversed: 0 ----hitSequence: CUUCGGGGACAUCCGAUAAAAUUGGAACGACACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUU hit 405 : 1 98 (fwd) 110.82 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 C: UCG:GGACAUC+G UAAAAUUGGAACGA ACAGAGAAGAUUAGCAUGGCCCCUG 1 ---CU-UCGGGGACAUCCGAUAAAAUUGGAACGACACAGAGAAGAUUAGCAUGGCCCCUG 56 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUU 57 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUU- 98 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #214134,sp|X52315.1|ZMU6RNA Maize DNA for U6 small nuclear RNA (snRNA) ----isReversed: 0 ----hitSequence: GUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCACAAAUCGAGAAAUGGUCCAAAUUUUU hit 406 : 1 103 (fwd) 136.14 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GUC:CUUCGG:GACAUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 GUCUCUUCGGAGACAUCCGAUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :::::::::::::::::::::.::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA AA+ CGAGAAAUG UCCAAAUUUUU 61 CGCAAGGAUGACACGCACAAAuCGAGAAAUGGUCCAAAUUUUU 103 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #390,sp|AB019576.1|AB019576 Rattus norvegicus mRNA for rTIM, complete cds. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGACCAAUACAGAGAAGAUGAGCAUGGCCCCUGCACAAGGACGACACACAAAUUCAUGACACGUUCCAUAUUUAA hit 407 : 4125 4231 (fwd) 98.04 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGA C+AUACAGAGAAGAU AGCAUGGC 4125 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGACCAAUACAGAGAAGAUGAGCAUGGC 4184 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGA GACAC CA+A+UC GA A GUUCCA AUUU 4185 CCCUGCACAAGGACGACACACAAAUUCAUGACACGUUCCAUAUUUAA 4231 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1390,sp|AC087775.2|AC087775 Rattus norvegicus clone RP31-464J4 strain Brown Norway, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCCCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUAGUGAAGCGUUCCAUAUUUUU hit 408 : 101054 100948 (rev) 127.95 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 84028 GUGCUcccUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 84087 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+U G GAA+ GUUCCA AUUUUU 84088 CCCUGCGCAAGGAUGACACACAAAUUAGUGAAGCGUUCCAUAUUUUU 84134 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1398,sp|AC091514.2|AC091514 Rattus norvegicus clone RP31-223K12 strain Brown Norway, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCCCAUGUACUAAAAUUGGAACGAUAUUGAGGAGAUUAGAUGGCCCCUGCACAAGGUUGACACACAAAUUCGUGAAGCGUUCCAUGUUUUU hit 409 : 52556 52451 (rev) 92.88 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUCG :G: CAU U+CUAAAAUUGGAACGAUA GAG AGAUUAG AUGGC 95815 GUGCUcgcUUCGgcAGCCCAUGUACUAAAAUUGGAACGAUAUUGAGGAGAUUAG-AUGGC 95873 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGG UGACAC CA+A+UCG GAA+ GUUCCA +UUUUU 95874 CCCUGCACAAGGUUGACACACAAAUUCGUGAAGCGUUCCAUGUUUUU 95920 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1421,sp|AC095904.7|AC095904 Rattus norvegicus 9 BAC CH230-10L20 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACGUCGGGGCAGCACGUAUAUUAAAAUUGGAAUACAAGACAGAGAAGAUUAUCAUGGCCCCUGUGCAAGGAUGACACGAAAAUUUGUGAAGCGUUAAAAAA hit 410 : 13103 13209 (fwd) 66.20 bits <<<<<...____....>>>>>:::::::::::::::::..:::::::::::::::::::: 1 GucCc...UUCG....gGgaCAUcUgcUAAAAUUGGAA..CgAUACAGAGAAGAUUAGCA 51 GU:C: UCG :G:AC U+U+ UAAAAUUGGAA C+A ACAGAGAAGAUUA CA 13103 GUGCUcacGUCGgggcAGCACGUAUAUUAAAAUUGGAAuaCAAGACAGAGAAGAUUAUCA 13162 ::::::::::::::::::::::::::::::::::::::::::::::::::: 52 UGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGGCCCCUG GCAAGGAUGACACG A+A+U G GAA+ GUU AAA 13163 UGGCCCCUGUGCAAGGAUGACACGAAAAUUUGUGAAGCGUUAAAAAA---- 13209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1432,sp|AC097745.8|AC097745 Rattus norvegicus 3 BAC CH230-11N5 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCGGCAGCACAUACACGAAAAAUGGAAUGAUACAGAGAAGAUCAGCACGGUCCUUGCACAAGGAUGACACACAAAUCUGUGCAAUGUUCCAUAUUUUU hit 411 : 198412 198518 (fwd) 91.99 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+++C AAAA UGGAA GAUACAGAGAAGAU AGCA GG 198412 GUGCUugcUUCGgcAGCACAUACACGAAAAAUGGAAUGAUACAGAGAAGAUCAGCACGGU 198471 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGC CAAGGAUGACAC CA+A+ G G AAUGUUCCA AUUUUU 198472 CCUUGCACAAGGAUGACACACAAAUCUGUGCAAUGUUCCAUAUUUUU 198518 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1434,sp|AC098190.5|AC098190 Rattus norvegicus 2 BAC CH230-197E15 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCAACAGCACAUAUACUAACAUUGGAACGAUACAAAGAAGAUUAGAAUGGCCCCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU hit 412 : 30521 30415 (rev) 113.92 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAA AUUGGAACGAUACA AGAAGAUUAG AUGGC 126266 GUGCUcacUUCAacAGCACAUAUACUAACAUUGGAACGAUACAAAGAAGAUUAGAAUGGC 126325 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA AUUUUU 126326 CCCUGCGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU 126372 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1461,sp|AC109542.6|AC109542 Rattus norvegicus 1 BAC CH230-270O15 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 0 ----hitSequence: GUGCCCACUUCGGCUGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACACAAAUUCAUGAAGCAUUCCAUAUUUAA hit 413 : 95148 95254 (fwd) 112.69 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C UUCG G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 95148 GUGCCcacUUCGgcUGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 95207 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACAC CA+A+UC GAA+ +UUCCA AUUU 95208 CCCUGCACAAGGAUGACACACAAAUUCAUGAAGCAUUCCAUAUUUAA 95254 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1468,sp|AC111648.6|AC111648 Rattus norvegicus 2 BAC CH230-103N18 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACGGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU hit 414 : 194512 194618 (fwd) 124.06 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUAC GAGAAGAUUAGCAUGGC 194512 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACGGAGAAGAUUAGCAUGGC 194571 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UCG GAA+UGUUCCA AUUUUU 194572 CCCUGCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU 194618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1480,sp|AC114699.5|AC114699 Rattus norvegicus 19 BAC CH230-235A3 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUAGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAUUCGUGAAGCGUUCCAUAUUUUU hit 415 : 3072 3178 (fwd) 129.15 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUU GAACGAUACAGAGAAGAUUAGCAUGGC 3072 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUAGAACGAUACAGAGAAGAUUAGCAUGGC 3131 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCAUA+UCG GAA+ GUUCCA AUUUUU 3132 CCCUGCGCAAGGAUGACACGCAUAUUCGUGAAGCGUUCCAUAUUUUU 3178 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1493,sp|AC119088.4|AC119088 Rattus norvegicus 4 BAC CH230-222H3 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCCCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUAGUGAAGCGUUCCAUAUUUUU hit 416 : 99211 99317 (fwd) 127.95 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 99211 GUGCUcccUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 99270 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+U G GAA+ GUUCCA AUUUUU 99271 CCCUGCGCAAGGAUGACACACAAAUUAGUGAAGCGUUCCAUAUUUUU 99317 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1494,sp|AC119111.5|AC119111 Rattus norvegicus 1 BAC CH230-300G8 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUUGGCAGUACAUAUACUAAAAUUGGAACGAGGCAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCGUUCCAUAUAUUU hit 417 : 58574 58680 (fwd) 101.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+CUAAAAUUGGAACGA CAGAGAAGAUUAGCAUGGC 58574 GUGCUcacUUUGgcAGUACAUAUACUAAAAUUGGAACGAGGCAGAGAAGAUUAGCAUGGC 58633 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+U G GAA+ GUUCCA AU UUU 58634 CCCUGUGCAAGGAUGACACACAAAUUUGUGAAGCGUUCCAUAUAUUU 58680 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1524,sp|AC131602.4|AC131602 Rattus norvegicus 2 BAC CH230-33J10 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCACAUAUACUAAAAUUAGAACGAUACAGAGAUUAGUAUGGCGACUGCACAAGGAUCGCACACAAAUUCGUGAAGCGUUCCAUAUUUUG hit 418 : 23079 23173 (fwd) 68.96 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU: UCG :ACAU+U+CUAAAAUU GAACGAUACAGA GAUUAG AUGGC CUG 23079 GUG--CUCG--CACAUAUACUAAAAUUAGAACGAUACAGA---GAUUAGUAUGGCGACUG 23131 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CAAGGAU CAC CA+A+UCG GAA+ GUUCCA AUUUU 23132 CACAAGGAUCGCACACAAAUUCGUGAAGCGUUCCAUAUUUUG 23173 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #4005,sp|AF156188.1|AF156188 Rattus norvegicus sodium-phosphate co-transporter type II (Npt2) gene, promoter region and partial cds. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUUCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUGUUUUU hit 419 : 1962 2068 (fwd) 128.26 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 1962 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 2021 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA +UUUUU 2022 CCCUUCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUGUUUUU 2068 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #13870,sp|K00784.1|RN6A Rat U6 (4.7S) small nuclear RNA. ----isReversed: 0 ----hitSequence: GUGCCUGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUU hit 420 : 2 107 (fwd) 125.48 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C UUCG G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 2 GUGCCugcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 61 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUU 62 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUU- 107 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #15394,sp|K03239.1|RNCYCP10 Rat (Sprague-Dawley) cytochrome c pseudogene, clone Ch4A-RC10. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 421 : 1074 1180 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 1074 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 1133 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 1134 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 1180 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCUUU hit 422 : 123052 123160 (fwd) 106.22 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 123052 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 123111 ::::::::::::::::::::::::::::::::::::::::::::..::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUU..UUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU UUU 123112 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUgcUUU 123160 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGUGCUCCAUAUUGCU hit 423 : 123577 123683 (fwd) 105.02 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 123577 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 123636 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+UG UCCA AUU U 123637 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGUGCUCCAUAUUGCU 123683 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 424 : 124104 124210 (fwd) 103.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 124104 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 124163 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 124164 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 124210 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCUUU hit 425 : 124634 124742 (fwd) 106.22 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 124634 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 124693 ::::::::::::::::::::::::::::::::::::::::::::..::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUU..UUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU UUU 124694 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUgcUUU 124742 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAGAUCCGUGAAGCGCUCCAUAUUGCU hit 426 : 125159 125265 (fwd) 102.02 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 125159 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 125218 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA A+ CG GAA+ G UCCA AUU U 125219 CCCUGCGAAAGGAUGACACGCAGAUCCGUGAAGCGCUCCAUAUUGCU 125265 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 427 : 135128 135234 (fwd) 103.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 135128 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 135187 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 135188 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 135234 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 428 : 135655 135761 (fwd) 103.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 135655 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 135714 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 135715 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 135761 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGAGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCUUU hit 429 : 136185 136293 (fwd) 100.51 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 136185 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 136244 ::::::::::::::::::::::::::::::::::::::::::::..::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUU..UUU 102 CCCUG G AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU UUU 136245 CCCUGAGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUgcUUU 136293 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCUGUGAAGCGCUCCAUAUUGCU hit 430 : 136714 136820 (fwd) 101.91 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 136714 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 136773 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ G GAA+ G UCCA AUU U 136774 CCCUGCGAAAGGAUGACACGCAAAUCUGUGAAGCGCUCCAUAUUGCU 136820 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 431 : 137244 137350 (fwd) 103.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 137244 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 137303 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 137304 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 137350 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGUCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCUUU hit 432 : 137774 137882 (fwd) 104.43 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUG C 137774 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGUC 137833 ::::::::::::::::::::::::::::::::::::::::::::..::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUU..UUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU UUU 137834 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUgcUUU 137882 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGUGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 433 : 138300 138406 (fwd) 97.93 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 138300 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 138359 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG G AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 138360 CCCUGUGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 138406 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGUUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 434 : 138830 138936 (fwd) 97.88 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGG CGAUACAGAGAAGAUUAGCAUGGC 138830 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGUUCGAUACAGAGAAGAUUAGCAUGGC 138889 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 138890 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 138936 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUUGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 435 : 139356 139462 (fwd) 103.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 139356 GUGCUugcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 139415 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 139416 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 139462 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 436 : 139885 139991 (fwd) 103.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 139885 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 139944 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 139945 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 139991 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 437 : 140411 140517 (fwd) 103.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 140411 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 140470 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 140471 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 140517 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGUGCUCCAUAUUGCU hit 438 : 140941 141047 (fwd) 105.02 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 140941 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 141000 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+UG UCCA AUU U 141001 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGUGCUCCAUAUUGCU 141047 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUUGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 439 : 141468 141574 (fwd) 103.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 141468 GUGCUugcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 141527 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 141528 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 141574 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU hit 440 : 141994 142100 (fwd) 103.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 141994 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 142053 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU U 142054 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCU 142100 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24213,sp|AL929029.7|AL929029 Zebrafish DNA sequence from clone CH211-15F21 ----isReversed: 0 ----hitSequence: UUGCUUGCUACAGUGGCACAUAUACUAAAAUUGGAUAGAUACAGAGAAGAUUAGCAUGGCCCCUGCAAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUGCUUU hit 441 : 142524 142632 (fwd) 93.80 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: U C :G:A:AU+U+CUAAAAUUGGA GAUACAGAGAAGAUUAGCAUGGC 142524 UUGCUugcUACAguGGCACAUAUACUAAAAUUGGAUAGAUACAGAGAAGAUUAGCAUGGC 142583 ::::::::::::::::::::::::::::::::::::::::::::..::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUU..UUU 102 CCCUGC AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUU UUU 142584 CCCUGCAAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUgcUUU 142632 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #34212,sp|BC049420.1|BC049420 Danio rerio, clone MGC:56395 IMAGE:5604936, mRNA, complete cds. ----isReversed: 0 ----hitSequence: GUGCUCGCUACGGUGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGCCCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUUUU hit 442 : 1 107 (fwd) 115.15 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGA CGAUACAGAGAAGAUUAGCAUGGC 1 GUGCUcgcUACGguGGCACAUAUACUAAAAUUGGAUCGAUACAGAGAAGAUUAGCAUGGC 60 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUGACACGCA+A+ CG GAA+ G UCCA AUUUUU 61 CCCUGCGAAAGGAUGACACGCAAAUCCGUGAAGCGCUCCAUAUUUUU 107 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #52544,sp|M31687.1|XTUG6 X.tropicalis U6 uRNA gene. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 443 : 705 811 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 705 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 764 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 765 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #142,sp|AB003151.1|AB003151 Homo sapiens DNA, chromosome 21q22.2, PAC clone 25P16 complete sequence, encoding carbonyl reductase and carbonyl reductase 3 ( ----isReversed: 0 ----hitSequence: GUGCUCGUUUGGGCAGCACAUAUACUAAAACCGGAAUGAUACAGACAAGAUUUAGCAUGGUGCCUGGGCAAGGAUGACAUGCAAAUUCAUGAAGCGUUCCAUUA hit 444 : 52602 52705 (fwd) 72.06 bits <<<<<..____...>>>>>::::::::::::::::::::::::::::::::.:::::::: 1 GucCc..UUCG...gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAU.UAGCAUGG 54 GU:C: UU G :G:ACAU+U+CUAAAA GGAA GAUACAGA AAGAU UAGCAUGG 52602 GUGCUcgUUUGggcAGCACAUAUACUAAAACCGGAAUGAUACAGACAAGAUuUAGCAUGG 52661 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUG GCAAGGAUGACA+GCA+A+UC GAA+ GUUCC UU 52662 UGCCUGGGCAAGGAUGACAUGCAAAUUCAUGAAGCGUUCC----AUUA 52705 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #1485,sp|AB015355.1|AB015355 Homo sapiens NRAMP2 gene for natural resistance-associated macrophage protein 2, complete cds. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCGGCAGCACGUAUACUAAAUUGGAACAAUCAAGAGAAGAUUAGCAUGGCCUCUCUGCACAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUU hit 445 : 15262 15366 (fwd) 80.18 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:AC U+U+CUAAA UGGAAC+AU AGAGAAGAUUAGCAUGGC 15262 GUGCUugcUUCGgcAGCACGUAUACUAAAU-UGGAACAAUCAAGAGAAGAUUAGCAUGGC 15320 ::...::::::::::::::::::::::::::::::::::::::::::::: 56 CC...CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUGC CAAGGAUGACACGCA+A+U G GAA+UGUUCCA U UU 15321 C-ucuCUGCACAAGGAUGACACGCAAAUUUGUGAAGUGUUCCA---UAUU 15366 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2343,sp|AB022785.1|AB022785 Homo sapiens ASH2L gene, complete cds, similar to Drosophila ash2 gene. ----isReversed: 0 ----hitSequence: GUGCUCACUUCCAUAUAUCACAUAUACCAAAAUUAGAAUGAUAAAGAGAAGAUGCAUGGCCCCUGUGCAAGAAUAACACACAAAUUUGUGAAGCGUUCCUUAUUUUU hit 446 : 16909 17015 (fwd) 68.91 bits <<<<<...____....>>>>>::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG....gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUG 53 GU: : UUC : :ACAU+U+C AAAAUU GAA GAUA AGAGAAGAU GCAUG 16909 GUGCUcacUUCCauauAUCACAUAUACCAAAAUUAGAAUGAUAAAGAGAAGAU--GCAUG 16966 ::::::::::::::::::::::::::::::::::::::::::::::::: 54 GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCCCCUG GCAAG AU ACAC CA+A+U G GAA+ GUUCC AUUUUU 16967 GCCCCUGUGCAAGAAUAACACACAAAUUUGUGAAGCGUUCCUUAUUUUU 17015 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2766,sp|AB026898.1|AB026898 Homo sapiens DNA, DLEC1 to ORCTL4 gene region, section 1/2 (DLEC1, ORCTL3, ORCTL4 genes, complete cds). ----isReversed: 1 ----hitSequence: GUGCUGGCUUCGGUAGCACAUAUACUAAAAUUGGAACGAUAUAGAGAAGAUUAGCAUGACCUCUGCACAAGGAUGACACACAAAUUUGUAAAGUGUUCCAUAUUUAA hit 447 : 252883 252777 (rev) 97.86 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUA AGAGAAGAUUAGCAUG C 17118 GUGCUggcUUCGguAGCACAUAUACUAAAAUUGGAACGAUAUAGAGAAGAUUAGCAUGAC 17177 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUGC CAAGGAUGACAC CA+A+U G AA+UGUUCCA AUUU 17178 CUCUGCACAAGGAUGACACACAAAUUUGUAAAGUGUUCCAUAUUUAA 17224 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #3826,sp|AB037814.1|AB037814 Homo sapiens mRNA for KIAA1393 protein, partial cds. ----isReversed: 1 ----hitSequence: GUCCUCACUUCAGCAGCACAUAUACUAAAAAACUGGAAUGGUACAGAGAAGAUCAGAAUGGUCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUU hit 448 : 2287 2182 (rev) 80.56 bits <<<<<...____..>>>>>:::::::::::...::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAA...UUGGAACgAUACAGAGAAGAUUAGCAU 52 GU C: UUC :G ACAU+U+CUAAAA UGGAA G UACAGAGAAGAU AG AU 2878 GUCCUcacUUCAgcAGCACAUAUACUAAAAaac-UGGAAUGGUACAGAGAAGAUCAGAAU 2936 :::::::::::::::::::::::::::::::::::::::::::::::::: 53 GGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GG CCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ GUUCCA U UU 2937 GGUCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCA---UAUU 2983 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #4473,sp|AB044947.1|AB044947 Homo sapiens gene for NDRG4-B, NDRG4-Bvar, NDRG4-H, complete cds. ----isReversed: 0 ----hitSequence: GUGCUCGCCCCAGCAGCACAURUACCAAAAUUGGAAUGAUACAGAGAAGAUGAGCACGACCCCUGUACAAGAAUGACCCACAUAUUCGUGAAGCCUUCCAUACUUAA hit 449 : 13681 13787 (fwd) 67.80 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: G :G:ACAU U+C AAAAUUGGAA GAUACAGAGAAGAU AGCA G C 13681 GUGCUcgccCCAGcAGCACAURUACCAAAAUUGGAAUGAUACAGAGAAGAUGAGCACGAC 13740 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG CAAG AUGAC C CAUA+UCG GAA+ UUCCA A UU 13741 CCCUGUACAAGAAUGACCCACAUAUUCGUGAAGCCUUCCAUACUUAA 13787 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9467,sp|AC002420.1|AC002420 Human Chromosome X, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUGGGCAGCACACAUACUAAAAUCGGAAUGAUACAGAGAUUAGCAUGGGCCCUGUGCAUGAAUGACAUGCAAAUUUGUGAAGCAUUCCAUAUUUUU hit 450 : 47378 47481 (fwd) 74.21 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACA +U+CUAAAAU GGAA GAUACAGA GAUUAGCAUGG 47378 GUGCUcacUUGGgcAGCACACAUACUAAAAUCGGAAUGAUACAGA---GAUUAGCAUGGG 47434 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCA G AUGACA+GCA+A+U G GAA+ +UUCCA AUUUUU 47435 CCCUGUGCAUGAAUGACAUGCAAAUUUGUGAAGCAUUCCAUAUUUUU 47481 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9539,sp|AC002528.1|AC002528 Human BAC clone GS1-542D18 from 7q31-q32, complete sequence. ----isReversed: 0 ----hitSequence: GUUCAGUUAGGCAGCACGUACACUAACAUUGGAAUGAUACAAGAAGGUUAGCAUGGCCUCUGCACAAGGAUGACACACAAAAUCAUGAUGUGUUCCAUUA hit 451 : 89731 89830 (fwd) 66.25 bits <<<<<.____..>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc.UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 GU C UU G G AC U+++CUAA AUUGGAA GAUACA AGAAG UUAGCAUGGCC 89731 GUUCAgUUAGgcAGCACGUACACUAACAUUGGAAUGAUACA-AGAAGGUUAGCAUGGCCU 89789 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGC CAAGGAUGACAC CA+AAUC GA +UGUUCC UU 89790 CUGCACAAGGAUGACACACAAAAUCAUGAUGUGUUCC----AUUA 89830 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9544,sp|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCAGCCACACAUACACUAAAAUUGGAACCAUACAGAGAAGAUUAGCAUGGUCCUCCCUGCGCAAGGAUGGCACGCAAAUUCUUGAUGCAUUCCAUAUUUUU hit 452 : 75591 75700 (fwd) 94.50 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: UUC :ACAU+++CUAAAAUUGGAAC AUACAGAGAAGAUUAGCAUGG 75591 GUGCUugcUUCAgcCACACAUACACUAAAAUUGGAACCAUACAGAGAAGAUUAGCAUGGU 75650 ::...::::::::::::::::::::::::::::::::::::::::::::: 56 CC...CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC CUGCGCAAGGAUG CACGCA+A+UC GA + +UUCCA AUUUUU 75651 CCuccCUGCGCAAGGAUGGCACGCAAAUUCUUGAUGCAUUCCAUAUUUUU 75700 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9548,sp|AC002541.1|AC002541 Human BAC clone CTB-43K6 from 7q21-q22, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCCUUGGUAGCGCAUAUACUAAAGCUGGAAUGAUACAGAGAAGUUUAGCAUGGCCCCUGAACAAGGAUGACAUUCAAAUUCGUGAAGCAUUCCAUUUUUUA hit 453 : 59377 59271 (rev) 89.01 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UU G :G: CAU+U+CUAAA UGGAA GAUACAGAGAAG UUAGCAUGGC 107607 GUGCUugccUUGGuAGCGCAUAUACUAAAGCUGGAAUGAUACAGAGAAGUUUAGCAUGGC 107666 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG CAAGGAUGACA+ CA+A+UCG GAA+ +UUCCA UUUU 107667 CCCUGAACAAGGAUGACAUUCAAAUUCGUGAAGCAUUCCAUUUUUUA 107713 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9557,sp|AC002553.2|AC002553 Homo sapiens chromosome , clone CTC-529I10, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAAUACUAAAAUUGGAACGAUGCAGAGAUUAGCAUGGCCUCUGCGCAAGGAUGACAAGCAAAUUUGUGAAUCAUUCCAUAUUUAA hit 454 : 31537 31641 (fwd) 77.48 bits <<<<<...____..>>>>>:::.::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUc.UgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGG 54 GU:C: UUC :G:ACAU+ U+CUAAAAUUGGAACGAU CAGA GAUUAGCAUGG 31537 GUGCUcgcUUCAgcAGCACAUAaUACUAAAAUUGGAACGAUGCAGA---GAUUAGCAUGG 31593 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC CUGCGCAAGGAUGACA GCA+A+U G GAA +UUCCA AUUU 31594 CCUCUGCGCAAGGAUGACAAGCAAAUUUGUGAAUCAUUCCAUAUUUAA 31641 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9594,sp|AC003025.1|AC003025 Human Chromosome 11p12.2 PAC clone pDJ466a11, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCGUGGCCCCUGUGCAAGGUUGACAUGCAAAUUUGUGAAGCUUUCCAUUAU hit 455 : 67074 67177 (fwd) 93.24 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGC UGGC 67074 GUGCUcacUUCAgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCGUGGC 67133 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGG UGACA+GCA+A+U G GAA+ +UUCCA UU U 67134 CCCUGUGCAAGGUUGACAUGCAAAUUUGUGAAGCUUUCCA---UUAU 67177 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9681,sp|AC003689.1|AC003689 Homo sapiens Chromosome 11q12.2 PAC clone pDJ1081b4 containing human mRNA for T-cell glycoprotein CD6, complete sequence. ----isReversed: 1 ----hitSequence: GUGCAAGCUUCGGCGGUACAUAUACGAAAACUGGAACAAUACAGAGAAGAUUAGAAUGACCCCUGUACAGGUAUGACACGUGAAUUCGUGAAGCGUUCUAUAUCUUU hit 456 : 23381 23275 (rev) 72.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C UUCG G ACAU+U+C AAAA UGGAAC+AUACAGAGAAGAUUAG AUG C 114313 GUGCAagcUUCGgcGGUACAUAUACGAAAACUGGAACAAUACAGAGAAGAUUAGAAUGAC 114372 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG CA G AUGACACG +A+UCG GAA+ GUUC A AU UUU 114373 CCCUGUACAGGUAUGACACGUGAAUUCGUGAAGCGUUCUAUAUCUUU 114419 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9772,sp|AC004050.1|AC004050 Homo sapiens chromosome 4 clone B207D4 map 4q25, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAGGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 457 : 122991 122885 (rev) 121.82 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 4108 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 4167 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGA GACA+GCA+A+UCG GAA+ GUUCCA AUUUUU 4168 CCCUGCGCAAGGAGGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU 4214 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9828,sp|AC004128.1|AC004128 Homo sapiens PAC clone RP5-850G1 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUGUACUAAAAUUAGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 458 : 12804 12698 (rev) 124.92 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU U+CUAAAAUU GAACGAUACAGAGAAGAUUAGCAUGGC 81101 GUGCUcgcUUCGgcAGCACAUGUACUAAAAUUAGAACGAUACAGAGAAGAUUAGCAUGGC 81160 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 81161 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 81207 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9848,sp|AC004158.1|AC004158 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-10F4, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCAGCAGCACAUAUGCUAAAAUUGGCACAACACAGAGAAGAUUAGCAUGAUUAGCAUGGCCCCCGUGCAAGGAUGACACACAAAUUUGUGAAGAAUUCCAUAUUUUU hit 459 : 173967 173852 (rev) 98.08 bits <<<<<...____..>>>>>:::::::::::::::::::::::::::::::::........ 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUU........ 47 GU:C: UUC :G:ACAU+UGCUAAAAUUGG AC+A ACAGAGAAGAUU 6585 GUGCUugcUUCAgcAGCACAUAUGCUAAAAUUGGCACAACACAGAGAAGAUUagcaugau 6644 .::::::::::::::::::::::::::::::::::::::::::::::::::::::: 48 .AGCAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 AGCAUGGCCCC G GCAAGGAUGACAC CA+A+U G GAA+ +UUCCA AUUUUU 6645 uAGCAUGGCCCCCGUGCAAGGAUGACACACAAAUUUGUGAAGAAUUCCAUAUUUUU 6700 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9867,sp|AC004182.1|AC004182 Homo sapiens clone UWGC:O32A from 6p21, complete sequence. ----isReversed: 1 ----hitSequence: GUACUCGCUUUGGCAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGCCCCUGCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU hit 460 : 14162 14056 (rev) 100.97 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+ UAAAAU GGAA GAUACAGAGAAGAU AGCA GGC 27114 GUACUcgcUUUGgcAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGC 27173 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGG UGACA+GCA+A+UC GAA+ +UUCCA AUUUUU 27174 CCCUGCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU 27220 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9911,sp|AC004228.2|AC004228 Homo sapiens Chromosome 11q12.2 PAC clone pDJ519o13 containing human gene for ferritin heavy chain (FTH), complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCGUGGCCCCUGUGCAAGGUUGACAUGCAAAUUUGUGAAGCUUUCCAUUAU hit 461 : 166935 167038 (fwd) 93.24 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGC UGGC 166935 GUGCUcacUUCAgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCGUGGC 166994 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGG UGACA+GCA+A+U G GAA+ +UUCCA UU U 166995 CCCUGUGCAAGGUUGACAUGCAAAUUUGUGAAGCUUUCCA---UUAU 167038 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9925,sp|AC004254.1|AC004254 Homo sapiens BAC clone CTB-158K20 from 1p32, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUCGGCAGCACAUACGCUAAAAUUGGAAUGAUACAGAGAUUAGCAUGGCCCCCUGCACAAAGGAUGACACAAACAUUUGUGAAGCCUUUCAUAUUUAA hit 462 : 84050 84151 (fwd) 73.85 bits <<<<<____..>>>>>:::::::::::::::::::::::::::::::::::::::::::. 1 GucCcUUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC. 57 GU:C UUCG G:ACAU++GCUAAAAUUGGAA GAUACAGA GAUUAGCAUGGCCC 84050 GUGC-UUCGgcAGCACAUACGCUAAAAUUGGAAUGAUACAGA---GAUUAGCAUGGCCCc 84105 ::::::::.::::::::::::::::::::::::::::::::::::: 58 CUGCGCAA.GGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGC CAA GGAUGACAC A A+U G GAA+ UU CA AUUU 84106 CUGCACAAaGGAUGACACAAACAUUUGUGAAGCCUUUCAUAUUUAA 84151 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9933,sp|AC004381.1|AC004381 Homo sapiens Chromosome 16 BAC clone CIT987SK-44M2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCAGUACAUACACUAAAAUUGGAAUGAUACAGAGCAGAUUAGCAUGGCCCCUGCACAAGGAUGACAUGCAAAUUUUUGAAGCAUUCCAUGA hit 463 : 140864 140966 (fwd) 85.47 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUC :G ACAU+++CUAAAAUUGGAA GAUACAGAG AGAUUAGCAUGGC 140864 GUGCUcacUUCAgcAGUACAUACACUAAAAUUGGAAUGAUACAGAGCAGAUUAGCAUGGC 140923 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACA+GCA+A+U GAA+ +UUCCA + 140924 CCCUGCACAAGGAUGACAUGCAAAUUUUUGAAGCAUUCCAUGA---- 140966 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9965,sp|AC004458.1|AC004458 Homo sapiens BAC clone CTB-57J11 from 7q21.1-q22, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAAUAAUACUGAGAAGAUUAGCAUGGCCCCUGCCCAAGGAUGAUAGGCAAUCCACAAAGCAUUUCAUAUUUUU hit 464 : 148811 148706 (rev) 88.77 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAA +AUAC GAGAAGAUUAGCAUGGC 19246 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAAUAAUACUGAGAAGAUUAGCAUGGC 19305 ::::::::::::::::::::::::::.::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGA A GCA+ C AA+ +UU CA AUUUUU 19306 CCCUGCCCAAGGAUGAUAGGCAAUCCaCA--AAGCAUUUCAUAUUUUU 19351 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9965,sp|AC004458.1|AC004458 Homo sapiens BAC clone CTB-57J11 from 7q21.1-q22, complete sequence. ----isReversed: 1 ----hitSequence: GUGUUCGCUUUGACGGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCCGUGCAAGGAUGACAUGUAAAUUCAUGAAGUGUCCCAUAUUCUU hit 465 : 138309 138203 (rev) 100.02 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UU G :::ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 29748 GUGUUcgcUUUGacGGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 29807 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC G GCAAGGAUGACA+G A+A+UC GAA+UGU CCA AUU UU 29808 CCCCGUGCAAGGAUGACAUGUAAAUUCAUGAAGUGUCCCAUAUUCUU 29854 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9982,sp|AC004477.1|AC004477 Homo sapiens chromosome 17, clone HRPC890E16, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUAAGCAGCACAUGUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUAUGCAAAGACGACACACAAAUUCAUGAAGCAGUCCAUAUUUUU hit 466 : 132917 132811 (rev) 96.95 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U G :G:ACAU U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 2589 GUGCUugcuUAAGcAGCACAUGUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 2648 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU GCAA GA GACAC CA+A+UC GAA+ + UCCA AUUUUU 2649 CCCUAUGCAAAGACGACACACAAAUUCAUGAAGCAGUCCAUAUUUUU 2695 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #19,sp|AC004528.1|AC004528 Homo sapiens chromosome 19, cosmid R32184, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 467 : 39749 39855 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 39749 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 39808 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 39809 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 39855 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #34,sp|AC004548.1|AC004548 Homo sapiens PAC clone RP5-1182N3 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GUACUUGCUUCGACAGCACAUACUAGAACUGGAAUGAUACAGAGAAGAUUAGCAUGGCUUCUACACAAGAAUGACAUGAAAAUUUAUGAAGCAUUCCAAAUUUUU hit 468 : 94572 94468 (rev) 76.27 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUCG :G ACAU++ AA UGGAA GAUACAGAGAAGAUUAGCAUGGC 10556 GUACUugcUUCGacAGCACAUACUA-GAAC-UGGAAUGAUACAGAGAAGAUUAGCAUGGC 10613 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CU C CAAG AUGACA+G A+A+U GAA+ +UUCCAAAUUUUU 10614 UUCUACACAAGAAUGACAUGAAAAUUUAUGAAGCAUUCCAAAUUUUU 10660 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #121,sp|AC004686.1|AC004686 Homo sapiens chromosome 17, clone hRPC.1073_F_15, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGGCAGCACAUACACCAAAAUUGGAACAAUAUACAGAAGAUUAGCAUGGCCCCUGCACAAGAAUGACACUCAAAUUUGUGUUCUGUAUUAAAA hit 469 : 107727 107829 (fwd) 72.78 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+++C AAAAUUGGAAC+AUA A AGAAGAUUAGCAUGGC 107727 GUGCUugcUUUGgcAGCACAUACACCAAAAUUGGAACAAUAUACAGAAGAUUAGCAUGGC 107786 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAG AUGACAC CA+A+U G G UGU+ AAA 107787 CCCUGCACAAGAAUGACACUCAAAUUUGUGUUCUGUAUUAAAA---- 107829 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #190,sp|AC004796.2|AC004796 Homo sapiens Chromosome 11p14.3 PAC clone pDJ1034g4, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGUAACACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGCCCCCUACACUACGAUGACAUGCAAAUUCGUGAAGUGUUCUGUUAAAAAUUUUU hit 470 : 4750 4639 (rev) 92.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUG C 111063 GUGCUugcUUCGguAACACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGCC 111122 ::::::::::::::::::::::::::::::::::.....::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU.....gUUCCaaaUUUUU 102 CCCU C C A GAUGACA+GCA+A+UCG GAA+U GUU AAAUUUUU 111123 CCCUACACUACGAUGACAUGCAAAUUCGUGAAGUguucuGUUAAAAAUUUUU 111174 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #195,sp|AC004801.2|AC004801 Homo sapiens 12 PAC RP1-228P16 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGGCUCACUUUAGGAGCACAUAUACUAAGACUGGAACUAUAUAGAGAAGAUUAGCAUGGCCCCUGUACAACGAUGACAUGAAAAUUUGUGUAAUGUCAAAAAAAAUUUUU hit 471 : 57862 57753 (rev) 78.18 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UU G :G: CAU+U+CUAA A UGGAAC AUA AGAGAAGAUUAGCAUGGC 135914 GGGCUcacuUUAGgAGCACAUAUACUAAGACUGGAACUAUAUAGAGAAGAUUAGCAUGGC 135973 ::::::::::::::::::::::::::::::::::...::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU...gUUCCaaaUUUUU 102 CCCUG CAA GAUGACA+G A+A+U G G AAU + + AAAUUUUU 135974 CCCUGUACAACGAUGACAUGAAAAUUUGUGUAAUgucAAAAAAAAUUUUU 136023 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #211,sp|AC004819.2|AC004819 Homo sapiens PAC clone RP1-15I23 from 22, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCGUGGUCCCUGCACAAGAAUGACAUGCAAAUUGGUGAGGCUUUCCAUCUUUCU hit 472 : 38981 38875 (rev) 98.85 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGC UGG 20133 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCGUGGU 20192 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAG AUGACA+GCA+A+U G GA++ +UUCCA UUU U 20193 CCCUGCACAAGAAUGACAUGCAAAUUGGUGAGGCUUUCCAUCUUUCU 20239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #218,sp|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCAGCACAUAUGCUAAAAUUGGAACGAUACAGAGAAGAUUAGCUUGGCCCCUAUGCAAGGAUGACAUGCUUUUAAAAUAAAAAGAAAUUUU hit 473 : 47523 47424 (rev) 83.14 bits <<<<<...____>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 GU:C: UUC :G:ACAU+UGCUAAAAUUGGAACGAUACAGAGAAGAUUAGC UGGCCC 101650 GUGCUcacUUC-AGCACAUAUGCUAAAAUUGGAACGAUACAGAGAAGAUUAGCUUGGCCC 101708 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CU GCAAGGAUGACA+GC+U ++ A AAA + + UUUU 101709 CUAUGCAAGGAUGACAUGCUUUUAAAAUAAAAAGAAA----UUUU 101749 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #274,sp|AC004884.1|AC004884 Homo sapiens PAC clone RP4-778K6 from 7q31.1-q31.2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCAGCAGCAUAUAUACUAAAAUUGGAACAAUACAGAAAAGAUUAGCAUGGCCCCUGCCCAAGGAUGACUCACAAAUUCAUGAAGUGUUCUAGUAAUUUUU hit 474 : 119096 119204 (fwd) 94.99 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UUC :G:A AU+U+CUAAAAUUGGAAC+AUACAGA AAGAUUAGCAUGGC 119096 GUGCUugcUUCAgcAGCAUAUAUACUAAAAUUGGAACAAUACAGAAAAGAUUAGCAUGGC 119155 ::::::::::::::::::::::::::::::::::::::::..::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCa..aaUUUUU 102 CCCUGC CAAGGAUGAC C CA+A+UC GAA+UGUUC A AAUUUUU 119156 CCCUGCCCAAGGAUGACUCACAAAUUCAUGAAGUGUUCUAguAAUUUUU 119204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #275,sp|AC004885.2|AC004885 Homo sapiens PAC clone RP4-781A18 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCCUCUUGGCAGCACAUAUGCAAAAAUAGGAAAGAUACAGAGAAGAUUAGCAUGGCCCUUAUGCAAGGAUGACACACACAUUUAUGAAGCAUUUUAUAUUUUU hit 475 : 148193 148087 (rev) 86.82 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+UGC AAAAU GGAA GAUACAGAGAAGAUUAGCAUGGC 42650 GUGCUccucUUGGcAGCACAUAUGCAAAAAUAGGAAAGAUACAGAGAAGAUUAGCAUGGC 42709 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC U GCAAGGAUGACAC CA A+U GAA+ +UU A AUUUUU 42710 CCUUAUGCAAGGAUGACACACACAUUUAUGAAGCAUUUUAUAUUUUU 42756 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #314,sp|AC004924.2|AC004924 Homo sapiens PAC clone RP5-903G2 from 11, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCAGCAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 476 : 39943 39837 (rev) 120.16 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUU GAA GAUACAGAGAAGAUUAGCAUGGC 52229 GUGCUugcUUCAgcAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAAGAUUAGCAUGGC 52288 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 52289 CCCUGCACAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 52335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #327,sp|AC004938.3|AC004938 Homo sapiens PAC clone RP5-971C3 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUGGCUUCAGCAGCACACAUACUAAAAUUACAAUGGUACAGAGAAGAUUACCAUGGCCUGUGCACAAGGAUGACAUGCACAUUUGUGAAGUGCUUCAGAAUAUA hit 477 : 85325 85431 (fwd) 70.76 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACA +U+CUAAAAUU AA G UACAGAGAAGAUUA CAUGGC 85325 GUGCUggcUUCAgcAGCACACAUACUAAAAUUACAAUGGUACAGAGAAGAUUACCAUGGC 85384 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C UGC CAAGGAUGACA+GCA A+U G GAA+UG U CA A U U 85385 CUGUGCACAAGGAUGACAUGCACAUUUGUGAAGUGCUUCAGAAUAUA 85431 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #419,sp|AC005037.2|AC005037 Homo sapiens BAC clone RP11-469M7 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUUGGCAGCACAUAUACUAAAAUUUGAACAAUACAGAGAAGAUUAGUGUGGCCCCUGCACAAGGAUGAGACACAAAUUUGUGAAGCUUUUCAUACUUAA hit 478 : 132665 132771 (fwd) 89.27 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUU GAAC+AUACAGAGAAGAUUAG UGGC 132665 GUGCUcacUUUGgcAGCACAUAUACUAAAAUUUGAACAAUACAGAGAAGAUUAGUGUGGC 132724 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGA AC CA+A+U G GAA+ +UU CA A UU 132725 CCCUGCACAAGGAUGAGACACAAAUUUGUGAAGCUUUUCAUACUUAA 132771 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #419,sp|AC005037.2|AC005037 Homo sapiens BAC clone RP11-469M7 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAAUUGGAACGAUACAGAGAAGAUUAUCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 479 : 184477 184370 (rev) 115.96 bits <<<<<...____..>>>>>:::::::.::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU.AAAAUUGGAACgAUACAGAGAAGAUUAGCAUGG 54 GU:C: UUCG :G:ACAU+U+CU AAAAUUGGAACGAUACAGAGAAGAUUA CAUGG 6032 GUGCUcacUUCGgcAGCACAUAUACUaAAAAUUGGAACGAUACAGAGAAGAUUAUCAUGG 6091 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCCUG GCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 6092 CCCCUGUGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 6139 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #430,sp|AC005049.2|AC005049 Homo sapiens BAC clone CTB-23I15 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GCGCUGGCUUCGGCAGCACAUAUACUAAAAAUUGGAAAGACAGGGAGAAGAUCGCAUGGCCCCUGUGCAAAGAUGACAUGCAAAUUCAUAAAGCAUUUCAUAUAUUU hit 480 : 97844 97950 (fwd) 70.38 bits <<<<<...____..>>>>>:::::::.::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU.AAAAUUGGAACgAUACAGAGAAGAUUAGCAUGG 54 G::C: UUCG :G::CAU+U+CU AAAAUUGGAA GA A GAGAAGAU GCAUGG 97844 GCGCUggcUUCGgcAGCACAUAUACUaAAAAUUGGAAAGACAGGGAGAAGAU-CGCAUGG 97902 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCCUG GCAA GAUGACA+GCA+A+UC AA+ +UU CA AU UUU 97903 CCCCUGUGCAAAGAUGACAUGCAAAUUCAUAAAGCAUUUCAUAUAUUU 97950 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #458,sp|AC005084.2|AC005084 Homo sapiens BAC clone CTA-298G8 from 7p15-p21, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUAGUAAAAUUGGAACUAUACAGAAAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACACAGAUUUGUGAAGCAUUGCAUAUUUUU hit 481 : 21669 21775 (fwd) 114.07 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+ UAAAAUUGGAAC AUACAGA AAGAUUAGCAUGGC 21669 GUGCUcgcUUCGgcAGCACAUAUAGUAAAAUUGGAACUAUACAGAAAAGAUUAGCAUGGC 21728 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACAC CA A+U G GAA+ +UU CA AUUUUU 21729 CCCUGCACAAGGAUGACACACAGAUUUGUGAAGCAUUGCAUAUUUUU 21775 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #650,sp|AC005355.1|AC005355 Homo sapiens chromosome 5, P1 clone 1307e8 (LBNL H60), complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUACUUCAGCCGCACAUAUACUAAAAUUGGAGCAAUACAGAGAAAAUUAGCAUGGACGCUGUGCAAGGUUGACACGCAAAUUCAUGAAGCAUUCCAUAUUUUU hit 482 : 40049 39943 (rev) 91.01 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C UUC G:ACAU+U+CUAAAAUUGGA C+AUACAGAGAA AUUAGCAUGG 38017 GUGCUuacUUCAgcCGCACAUAUACUAAAAUUGGAGCAAUACAGAGAAAAUUAGCAUGGA 38076 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUG GCAAGG UGACACGCA+A+UC GAA+ +UUCCA AUUUUU 38077 CGCUGUGCAAGGUUGACACGCAAAUUCAUGAAGCAUUCCAUAUUUUU 38123 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #671,sp|AC005377.2|AC005377 Homo sapiens PAC clone RP5-1136G2 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGACAGCACAUACACUAAAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUUA hit 483 : 79495 79599 (fwd) 92.25 bits <<<<<...____..>>>>>:::::::..:::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU..AAAAUUGGAACgAUACAGAGAAGAUUAGCAUG 53 GU:C: UU G :G:ACAU+++CU AAAAUUGGAA GAUACAGAGAAGAUUAGCAUG 79495 GUGCUugcUUUGacAGCACAUACACUaaAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUG 79554 ::::::::::::::::::::::::::::::::::::::::::::::::: 54 GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCCCCUG GCAAGGAUGACA+GCA+A+UC GAA+ +UUCC UU 79555 GCCCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCC----AUUA 79599 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #718,sp|AC005500.2|AC005500 Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUCAGAACGAUAGAAGAUUCUCAUGGCCUCUGCCCAAGGGUGACACGCAAAUGUGUGAAGCGUUCCAUAUUUUU hit 484 : 68310 68208 (rev) 68.68 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAU GAACGAUA GAAGAUU CAUGGC 124283 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUCAGAACGAUA----GAAGAUUCUCAUGGC 124338 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUGC CAAGG UGACACGCA+A+ G GAA+ GUUCCA AUUUUU 124339 CUCUGCCCAAGGGUGACACGCAAAUGUGUGAAGCGUUCCAUAUUUUU 124385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #811,sp|AC005610.1|AC005610 Homo sapiens chromosome 5, PAC clone 502L6 (LBNL H156), complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAAGAUUAGCAUGGCCCCUGUGCAAAGAUAAUACAUAAAUUUGUGAGGCGUUCCAUCUUUU hit 485 : 154780 154886 (fwd) 88.31 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::.:::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGA.AGAUUAGCAUGG 54 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGA AGAUUAGCAUGG 154780 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAaAGAUUAGCAUGG 154839 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCCUG GCAA GAU A AC A+A+U G GA++ GUUCC A UUUU 154840 CCCCUGUGCAAAGAUAAUACAUAAAUUUGUGAGGCGUUCC-AUCUUUU 154886 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #852,sp|AC005686.1|AC005686 Homo sapiens clone GS1-234F24 from 7p14-15, complete sequence. ----isReversed: 1 ----hitSequence: GGUGCUUUGGCAGCAUAUAAACUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCUUGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU hit 486 : 110792 110689 (rev) 86.71 bits <<<<<____>>>>>::::::..:::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgc..UAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 G : CUU GG : CAU+U+ UAAAAUUGGAAC AUACAGAGAAGAUUA CAUGGC C 30596 GGUGCUUUGGCAGCAUAUAAacUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCU 30655 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UG GCAAGGAUGACA+GCA+A+UC GAAA +UU A AUUUUU 30656 UGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU 30699 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #865,sp|AC005703.2|AC005703 Homo sapiens chromosome 17, clone hRPK.849_N_15, complete sequence. ----isReversed: 1 ----hitSequence: UUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGGUUGGCAUGGCCCCUGAGCAAGGAUGACAUGCAAAUUCAUGAAACGUUACAUAGGUUUUU hit 487 : 115168 115060 (rev) 93.53 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUC :G:A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAG UU GCAUGGC 118287 UUGCUugcUUCAgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGGUUGGCAUGGC 118346 ::::::::::::::::::::::::::::::::::::::::::..::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaa..UUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UC GAAA GUU CA A UUUUU 118347 CCCUGAGCAAGGAUGACAUGCAAAUUCAUGAAACGUUACAUAggUUUUU 118395 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #889,sp|AC005755.1|AC005755 Homo sapiens chromosome 5, P1 clone 702A10 (LBNL H56), complete sequence. ----isReversed: 0 ----hitSequence: UUGCUCGCUUCAGCAGCAAAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGCCCCUUGUACAAGGAUGACACACAAAUUCGUGAAGCAUUUUU hit 488 : 26941 27040 (fwd) 84.61 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUC :G:A:AU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUG C 26941 UUGCUcgcUUCAgcAGCAAAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGCC 27000 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UG CAAGGAUGACAC CA+A+UCG GAA+ +U UUUU 27001 CCUUGUACAAGGAUGACACACAAAUUCGUGAAGCAU-------UUUU 27040 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #889,sp|AC005755.1|AC005755 Homo sapiens chromosome 5, P1 clone 702A10 (LBNL H56), complete sequence. ----isReversed: 1 ----hitSequence: GUACUCACUUCGACAGCAUGUAUACUAAAAUUAGAACCAUACAGAGAAGAUUAGCAUGGCCCCAGUGCAAGGAUGACACGUAAAUUCGUGAAGUGUUCCAUAUUUUA hit 489 : 12737 12631 (rev) 95.25 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U C: UUCG :G A U+U+CUAAAAUU GAAC AUACAGAGAAGAUUAGCAUGGC 65300 GUACUcacUUCGacAGCAUGUAUACUAAAAUUAGAACCAUACAGAGAAGAUUAGCAUGGC 65359 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC G GCAAGGAUGACACG A+A+UCG GAA+UGUUCCA AUUUU 65360 CCCAGUGCAAGGAUGACACGUAAAUUCGUGAAGUGUUCCAUAUUUUA 65406 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #934,sp|AC005821.1|AC005821 Homo sapiens chromosome 17, clone hRPK.156_L_14, complete sequence. ----isReversed: 1 ----hitSequence: AUGCUCACUUUGGCAGCACAUGUACAAAAAGUGAAACAAUACAGAGAAGAUUAGCAUGGCCCUGCACAAGGAUGCUAUGCAAAUUCCUGAAGGGUCCAUAUUUUG hit 490 : 122831 122727 (rev) 76.22 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UU G :G:A:AU U+C AAAA UG AAC+AUACAGAGAAGAUUAGCAUGG 51598 AUGCUcacUUUGgcAGCACAUGUACAAAAAGUGAAACAAUACAGAGAAGAUUAGCAUGG- 51656 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUG A+GCA+A+UC GAA+ G UCCA AUUUU 51657 CCCUGCACAAGGAUGCUAUGCAAAUUCCUGAAG-GGUCCAUAUUUUG 51702 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #945,sp|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.318_A_15, complete sequence. ----isReversed: 1 ----hitSequence: CUGCUUCAGCAGCAGAUAUACUAAAAUUGGAACGAUACAGAGAAAAUUAGCAUGACCCCUGUGCAAGGAUGACACGCAAAUUUGUGAAGUGCUCCAUAUAUAA hit 491 : 107170 107068 (rev) 90.69 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 U:C:U G :G:A AU+U+CUAAAAUUGGAACGAUACAGAGAA AUUAGCAUG CCCCU 56049 CUGCUUCAGcAGCAGAUAUACUAAAAUUGGAACGAUACAGAGAAAAUUAGCAUGACCCCU 56108 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 G GCAAGGAUGACACGCA+A+U G GAA+UG UCCA AU U 56109 GUGCAAGGAUGACACGCAAAUUUGUGAAGUGCUCCAUAUAUAA 56151 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #945,sp|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.318_A_15, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCGGCAGCACAAAUACUAAAAUUGGAACAAUACAGAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUUGUGAAGUGUUCCAUAUUUAA hit 492 : 10578 10475 (rev) 103.46 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACA +U+CUAAAAUUGGAAC+AUACAGA GAUUAGCAUGGC 152641 GUGCUcacUUCGgcAGCACAAAUACUAAAAUUGGAACAAUACAGA---GAUUAGCAUGGC 152697 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+U G GAA+UGUUCCA AUUU 152698 CCCUGCGCAAGGAUGACAUGCAAAUUUGUGAAGUGUUCCAUAUUUAA 152744 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #972,sp|AC005875.2|AC005875 citb_188_b_12, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUGGCAUCAGCUGUACAUAUAGUAAAAUUGAAACAACUUCGAGAAGAUCAGCAUGGUCCCUGCACGAGGAUGACACACAGAUUUGUGAAGUGUUGCAUAUUUCU hit 493 : 21108 21002 (rev) 76.97 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C U G G ACAU+U+ UAAAAUUG AAC+A GAGAAGAU AGCAUGG 110428 GUGCUggcaUCAGcUGUACAUAUAGUAAAAUUGAAACAACUUCGAGAAGAUCAGCAUGGU 110487 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC C AGGAUGACAC CA A+U G GAA+UGUU CA AUUU U 110488 CCCUGCACGAGGAUGACACACAGAUUUGUGAAGUGUUGCAUAUUUCU 110534 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1050,sp|AC006006.2|AC006006 Homo sapiens PAC clone RP4-813F11 from 7q32-q34, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAAUAAUACAGAGAAGAUAGGCAUGGCCCUUGCCUAAGAAUGGCAUGCAAAUUCAUGAAGCACUCCAUAUUUUU hit 494 : 3194 3300 (fwd) 86.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAA +AUACAGAGAAGAU GCAUGGC 3194 GUGCUugcUUCAgcAGCACAUAUACUAAAAUUGGAAUAAUACAGAGAAGAUAGGCAUGGC 3253 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGC AAG AUG CA+GCA+A+UC GAA+ + UCCA AUUUUU 3254 CCUUGCCUAAGAAUGGCAUGCAAAUUCAUGAAGCACUCCAUAUUUUU 3300 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1055,sp|AC006011.2|AC006011 Homo sapiens PAC clone RP5-935K16 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GUACUCACUUUGGCAGCACAUAUACCCAAAUUGGAACAAUACAGAGAAGACAGCAUGGCCACUGCCCAAGAAUGACAUGCAAAUUCAUCAAGCAUUAAAAAACGAAAGUUAACUGUAGAUUUGGGUAAGCAAUUUCACUUUUUU hit 495 : 144917 145060 (fwd) 67.46 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+C AAAUUGGAAC+AUACAGAGAAGA AGCAUGGC 144917 GUACUcacUUUGgcAGCACAUAUACCCAAAUUGGAACAAUACAGAGAAGAC-AGCAUGGC 144975 ::::::::::::::::::::::::::::::::::.......................... 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU.......................... 89 C CUGC CAAG AUGACA+GCA+A+UC AA+ 144976 CACUGCCCAAGAAUGACAUGCAAAUUCAUCAAGCauuaaaaaacgaaaguuaacuguaga 145035 ............::::::::::::: 90 ............gUUCCaaaUUUUU 102 +UU CA UUUUU 145036 uuuggguaagcaAUUUCACUUUUUU 145060 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1072,sp|AC006029.2|AC006029 Homo sapiens BAC clone GS1-195F7 from 7q31.2-q32, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUAA hit 496 : 38172 38066 (rev) 124.89 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 105680 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 105739 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUU 105740 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUAA 105786 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1093,sp|AC006050.1|AC006050 Homo sapiens chromosome 17, clone hRPK.268_F_2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUGGCUUCAGCAGCACAUACACUAAAAUUGGAAUGAUGCAGAAAUUAUCAUGGCCCCUGUACAAGGAUGACAUGCAAAUUCGUGAAGGCUUCUGUGUUUCUUUUUUUU hit 497 : 2708 2818 (fwd) 74.83 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::.:::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAG.AUUAGCAUGG 54 GU:C: UUC :G:ACAU+++CUAAAAUUGGAA GAU CAGA AUUA CAUGG 2708 GUGCUggcUUCAgcAGCACAUACACUAAAAUUGGAAUGAUGCAGA----aAUUAUCAUGG 2763 :::::::::::::::::::::::::::::::::::.......::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU.......gUUCCaaaUUUUU 102 CCCCUG CAAGGAUGACA+GCA+A+UCG GAA+ GUU C UUUUU 2764 CCCCUGUACAAGGAUGACAUGCAAAUUCGUGAAGGcuucuguGUUUCUUUUUUUU 2818 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1174,sp|AC006203.1|AC006203 Homo sapiens chromosome 18, clone hRPK.453_M_1, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAAGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 498 : 27834 27942 (fwd) 116.02 bits <<<<<...____..>>>>>::::::..::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgc..UAAAAUUGGAACgAUACAGAGAAGAUUAGCAUG 53 GU:C: UUC :G:ACAU+U+ UAAAAUUGGAA GAUACAGAGAAGAUUAGCAUG 27834 GUGCUcgcUUCAgcAGCACAUAUAUacUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUG 27893 ::::::::::::::::::::::::::::::::::::::::::::::::: 54 GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCCCCUGCGCAA GAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 27894 GCCCCUGCGCAAAGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 27942 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1244,sp|AC006329.5|AC006329 Homo sapiens BAC clone RP11-132A1 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAUUAGCAUGGCCCCAGCGCAAGGAUGACACACAGAUUCGCGAUGCAUUCCAUAUUCUU hit 499 : 39315 39212 (rev) 94.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGA GAUUAGCAUGGC 105939 GUGCUugcUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGA---GAUUAGCAUGGC 105995 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC GCGCAAGGAUGACAC CA A+UCG GA + +UUCCA AUU UU 105996 CCCAGCGCAAGGAUGACACACAGAUUCGCGAUGCAUUCCAUAUUCUU 106042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1340,sp|AC006465.2|AC006465 Homo sapiens BAC clone RP11-438H20 from 7p22-p21, complete sequence. ----isReversed: 0 ----hitSequence: UUGGUUUUGCAGCAGAUAUACUAAAAUUGGAAUGAUACAGAGAAGACCAGCAUAGCUCCUGCACACACAGGGUGAUACACAAAUUUGUGAAAUAUAUUUUUCAUUU hit 500 : 66485 66590 (fwd) 67.94 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U: :UU G : :A:AU+U+CUAAAAUUGGAA GAUACAGAGAAGA AGCAU GC CCU 66485 UUGGUUUUGcAGCAGAUAUACUAAAAUUGGAAUGAUACAGAGAAGACCAGCAUAGCUCCU 66544 :::::...:::::::::::::::::::::::::::::::::::::: 60 GCGCA...AGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GC CA AGG UGA AC CA+A+U G GAAAU+U+ UUU 66545 GCACAcacAGGGUGAUACACAAAUUUGUGAAAUAUAUUUUUCAUUU 66590 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1378,sp|AC006530.4|AC006530 Homo sapiens chromosome 14 clone BAC 316E14 map 14q24.3, complete sequence. ----isReversed: 0 ----hitSequence: GUGUUCGCUUUGGCAGCACAUAUAAUAAAAUUGGAGUGAUACGGAGAAGAUUAGCAUGGUCCGUGCACAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUCUU hit 501 : 170825 170928 (fwd) 83.50 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UU G :::ACAU+U+ UAAAAUUGGA GAUAC GAGAAGAUUAGCAUGG 170825 GUGUUcgcUUUGgcAGCACAUAUAAUAAAAUUGGAGUGAUACGGAGAAGAUUAGCAUGGU 170884 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGC CAAGGAUGACA+GCA+A+UC GAA+ +UUCCA U UU 170885 CCGUGCACAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCA---UCUU 170928 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1411,sp|AC006597.2|AC006597 Homo sapiens Chromosome 11p14.3 PAC clone pDJ292d23, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGUAACACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGCCCCCUACACUACGAUGACAUGCAAAUUCGUGAAGUGUUCUGUUAAAAAUUUUU hit 502 : 46881 46770 (rev) 92.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUG C 56426 GUGCUugcUUCGguAACACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGCC 56485 ::::::::::::::::::::::::::::::::::.....::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU.....gUUCCaaaUUUUU 102 CCCU C C A GAUGACA+GCA+A+UCG GAA+U GUU AAAUUUUU 56486 CCCUACACUACGAUGACAUGCAAAUUCGUGAAGUguucuGUUAAAAAUUUUU 56537 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1462,sp|AC006992.2|AC006992 Homo sapiens BAC clone RP11-302C22 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GCGCUUGCUUUGGCAGCACAUAUGCUAACACUGGACCAAUACAGGGAAGAUCAGCAAGGCCCCUGCACAAGAAUGACACAUAAAUGCAUAAAGAUUCCAUAUUUUU hit 503 : 99586 99481 (rev) 72.27 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G::C: UU G :G::CAU+UGCUAA A UGGA C+AUACAG GAAGAU AGCA GGC 75526 GCGCUugcUUUGgcAGCACAUAUGCUAACACUGGACCAAUACAGGGAAGAUCAGCAAGGC 75585 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAG AUGACAC A+A+ C AA+ +UUCCA AUUUUU 75586 CCCUGCACAAGAAUGACACAUAAAUGCAUAAAG-AUUCCAUAUUUUU 75631 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1476,sp|AC007006.3|AC007006 Homo sapiens BAC clone RP11-548P6 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGUUUUGGCAGCACAUAUACUAAAAUCAGAAUGAUACAGAGAAGAUUAGCAUGGCCCCCACACAAAGAUGACAUAUAAAUUUGAUUUUAUAAUUUU hit 504 : 29964 29864 (rev) 66.91 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAU GAA GAUACAGAGAAGAUUAGCAUGGC 82064 GUGCUuguUUUGgcAGCACAUAUACUAAAAUCAGAAUGAUACAGAGAAGAUUAGCAUGGC 82123 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC C CAA GAUGACA+ A+A+U G +UU A A UUUU 82124 CCCCACACAAAGAUGACAUAUAAAUUUG------AUUUUAUAAUUUU 82164 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1497,sp|AC007032.2|AC007032 Homo sapiens BAC clone RP11-22N19 from 7q22, complete sequence. ----isReversed: 0 ----hitSequence: UUGCUUUGCAGCACAUAUACCAAAAUUGGAAUGAGACUGAGAGAUUAGCAUGGCCCCUGUGCAAAGAGGACACAAAAAUUCAUGAAGUGUUUCAUAUUGUU hit 505 : 13823 13923 (fwd) 71.44 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U:C:UU G :G:A:AU+U+C AAAAUUGGAA GA AC GAGA GAUUAGCAUGGCCCCU 13823 UUGCUUU-GcAGCACAUAUACCAAAAUUGGAAUGAGACUGAGA-GAUUAGCAUGGCCCCU 13880 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 G GCAA GA GACAC A+A+UC GAA+UGUU CA AUU UU 13881 GUGCAAAGAGGACACAAAAAUUCAUGAAGUGUUUCAUAUUGUU 13923 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1572,sp|AC007193.1|AC007193 Homo sapiens chromosome 19, BAC 82621 (CIT-B-139a18), complete sequence. ----isReversed: 1 ----hitSequence: AUGCUUGCUUAGGCAGCAUGUAUGCUAAAAAUUGGAAUAAUACAGAGAAGAUUAGCAUGGCCUCUGCACAAGGAUGAUAUGCAAAUGCAUGAAGCCUUCCAUGUUAAU hit 506 : 51791 51684 (rev) 73.45 bits <<<<<...____..>>>>>:::::::.::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU.AAAAUUGGAACgAUACAGAGAAGAUUAGCAUGG 54 :U:C: UU G :G:A: U+UGCU AAAAUUGGAA +AUACAGAGAAGAUUAGCAUGG 94390 AUGCUugcUUAGgcAGCAUGUAUGCUaAAAAUUGGAAUAAUACAGAGAAGAUUAGCAUGG 94449 :::::::::::::::::::::::::::::::::::::::::::::::: 55 CCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC CUGC CAAGGAUGA A+GCA+A+ C GAA+ UUCCA +UU U 94450 CCUCUGCACAAGGAUGAUAUGCAAAUGCAUGAAGCCUUCCAUGUUAAU 94497 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1631,sp|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y, complete sequence. ----isReversed: 0 ----hitSequence: UUGCUGACUUCGGCAGCAGGUAUACUAAAAUUGGAAUGACACAGAGGAGAUUAGCAUGGCCCCCUGCGCGAGGAAGAUCCGCAGAUUCAUGCAGCAUUCCAUAUUUUU hit 507 : 72770 72877 (fwd) 82.52 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A: U+U+CUAAAAUUGGAA GA ACAGAG AGAUUAGCAUGGC 72770 UUGCUgacUUCGgcAGCAGGUAUACUAAAAUUGGAAUGACACAGAGGAGAUUAGCAUGGC 72829 ::.::::::::::::::::::::::::::::::::::::::::::::: 56 CC.CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC CUGCGC AGGA GA CGCA A+UC G A+ +UUCCA AUUUUU 72830 CCcCUGCGCGAGGAAGAUCCGCAGAUUCAUGCAGCAUUCCAUAUUUUU 72877 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1677,sp|AC007364.3|AC007364 Homo sapiens BAC clone RP11-329H24 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGGCAACACAUAUUCUAAAAUUGGAACAAUACAGAGAAGAUCAGCAUGUCCAUGUGCAAGAAUGACAUGCAAAUCUGUGAACACGCUAUACAUUUUU hit 508 : 191272 191378 (fwd) 76.30 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UU G : :ACAU+U CUAAAAUUGGAAC+AUACAGAGAAGAU AGCAUG C 191272 GUGCUugcUUUGgcAACACAUAUUCUAAAAUUGGAACAAUACAGAGAAGAUCAGCAUGUC 191331 :::.:::::::::::::::::::::::::::::.::::::::::::::: 56 CCC.UGCGCAAGGAUGACACGcauAaUCGAGAa.aUgUUCCaaaUUUUU 102 C UG GCAAG AUGACA+GCA+A+ G GAA A G U A AUUUUU 191332 C--aUGUGCAAGAAUGACAUGCAAAUCUGUGAAcACGCUAUACAUUUUU 191378 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1702,sp|AC007391.3|AC007391 Homo sapiens BAC clone RP11-429J10 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUACUUCGACAGCACAUAUAUUACAAUUGGAAUGAUAUAGAGAAGACUAGCCUGGCCCCUGUGCAAGGAUGACAUGCAAAUUUGUGAAGUGUUCCAUAUU hit 509 : 173931 174034 (fwd) 86.41 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+ UA AAUUGGAA GAUA AGAGAAGA UAGC UGGC 173931 GUGCUuacUUCGacAGCACAUAUAUUACAAUUGGAAUGAUAUAGAGAAGACUAGCCUGGC 173990 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+U G GAA+UGUUCCA U UU 173991 CCCUGUGCAAGGAUGACAUGCAAAUUUGUGAAGUGUUCCA---UAUU 174034 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1718,sp|AC007424.40|AC007424 Homo sapiens 12 BAC RP11-1016B18 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUCCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 510 : 57041 56935 (rev) 129.67 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 26561 GUGCUcgcUCCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 26620 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 26621 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 26667 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1725,sp|AC007435.12|AC007435 Homo sapiens, clone 6_C_10, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUCUUGGGCAGCACAUAUACUAAAAAAUUGGAACAAUACAAAGAAGAUUAGCAUGGCCCCUAUGGAAGGAUGACACACAAAUUCAUGACACAUUGCAUAUUUUA hit 511 : 85218 85324 (fwd) 77.05 bits <<<<<.____..>>>>>:::::::..:::::::::::::::::::::::::::::::::: 1 GucCc.UUCG..gGgaCAUcUgcU..AAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+CU AAAAUUGGAAC+AUACA AGAAGAUUAGCAUGGC 85218 GUUCUcUUGGgcAGCACAUAUACUaaAAAAUUGGAACAAUACAAAGAAGAUUAGCAUGGC 85277 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU G AAGGAUGACAC CA+A+UC GA A +UU CA AUUUU 85278 CCCUAUGGAAGGAUGACACACAAAUUCAUGACACAUUGCAUAUUUUA 85324 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1820,sp|AC007621.34|AC007621 Homo sapiens 12 BAC RP11-757G14 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GUUCAGUUCAGCAGCACAUAUACUAACACUGGAACAAUUCACAGAUCAGCAUGGCCCCUGCACAAGGAUGACAUGCAAAUUCGUGAAGCGUUAGUAUUUUUA hit 512 : 7028 7129 (fwd) 70.67 bits <<<<<.____..>>>>>:::::::::::::::::::::::::::.::::::::::::::: 1 GucCc.UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAG.AAGAUUAGCAUGGCC 56 GU C UUC G ACAU+U+CUAA A UGGAAC+AU CA AGAU AGCAUGGCC 7028 GUUCAgUUCAgcAGCACAUAUACUAACACUGGAACAAUUCA---c-AGAUCAGCAUGGCC 7083 :::::::::::::::::::::::::::::::::::::::::::::: 57 CCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUGC CAAGGAUGACA+GCA+A+UCG GAA+ GUU A UUUU 7084 CCUGCACAAGGAUGACAUGCAAAUUCGUGAAGCGUUAGUAUUUUUA 7129 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1820,sp|AC007621.34|AC007621 Homo sapiens 12 BAC RP11-757G14 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GUGAUGGCUUCGGCAGCACAUAUACAAAAAUUGGAAUGAUACAAGAUUAGCAUGCCCCCUGCUUAAGGAUGACACACAAAUUCGUGAAGCAUUCCUUUUUUUU hit 513 : 69681 69579 (rev) 83.01 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UUCG :::ACAU+U+C AAAAUUGGAA GAUAC AAGAUUAGCAUG C 74320 GUGAUggcUUCGgcAGCACAUAUACAAAAAUUGGAAUGAUAC----AAGAUUAGCAUGCC 74375 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC AAGGAUGACAC CA+A+UCG GAA+ +UUCC UUUUU 74376 CCCUGCUUAAGGAUGACACACAAAUUCGUGAAGCAUUCCUUUUUUUU 74422 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1824,sp|AC007628.3|AC007628 Genomic sequence of Homo sapiens clone N0576M10 from chromosome 18, complete sequence. ----isReversed: 1 ----hitSequence: CUGCUGCCUUUGGCAGCACACAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUU hit 514 : 96355 96249 (rev) 117.35 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UU G :G:A A +U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 44002 CUGCUgccUUUGgcAGCACACAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 44061 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UC GAA+UGUUCCA AUUUUU 44062 CCCUGUGCAAGGAUGACACGCAAAUUCAUGAAGUGUUCCAUAUUUUU 44108 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1852,sp|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUGACUUCGGCAGCAGGUAUACUAAAAUUGGAAUGACACAGAGGAGAUUAGCAUGGCCCCCUGCGCGAGGAAGAUCUGCAGAUUCAUGCAGCAUUCCAUAUUUUU hit 515 : 113092 113199 (fwd) 78.64 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UUCG :G:A U+U+CUAAAAUUGGAA GA ACAGAG AGAUUAGCAUGGC 113092 GUGCUgacUUCGgcAGCAGGUAUACUAAAAUUGGAAUGACACAGAGGAGAUUAGCAUGGC 113151 ::.::::::::::::::::::::::::::::::::::::::::::::: 56 CC.CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC CUGCGC AGGA GA +GCA A+UC G A+ +UUCCA AUUUUU 113152 CCcCUGCGCGAGGAAGAUCUGCAGAUUCAUGCAGCAUUCCAUAUUUUU 113199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1852,sp|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUUGGCAGCGCAUAUACUAAAAUUGGAAUGAUACAGAUAAGAUUAGCAAGGCCCAUACAAGGAUGACAGGUAAAUUCGUGAAGCAUCUCAUUAUUUA hit 516 : 147600 147496 (rev) 71.78 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UU G :G: CAU+U+CUAAAAUUGGAA GAUACAGA AAGAUUAGCA GGC 30778 GUGCUugcUUUGgcAGCGCAUAUACUAAAAUUGGAAUGAUACAGAUAAGAUUAGCAAGGC 30837 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC U CAAGGAUGACA G A+A+UCG GAA+ +U CA UUU 30838 CCAU--ACAAGGAUGACAGGUAAAUUCGUGAAGCAUCUCAUUAUUUA 30882 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1908,sp|AC007849.24|AC007849 Homo sapiens 3 BAC RP11-3K16 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCUGCAGCACAUAUACUAAAAUUGGAAUGACACAUAGAGGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 517 : 11269 11375 (fwd) 105.56 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAA GA ACA AGA GAUUAGCAUGGC 11269 GUGCUcgcUUCUgcAGCACAUAUACUAAAAUUGGAAUGACACAUAGAGGAUUAGCAUGGC 11328 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UCG GAA+ GUUCCA AUUUUU 11329 CCCUGUGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUCCAUAUUUUU 11375 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1921,sp|AC007878.2|AC007878 Homo sapiens BAC clone RP11-236P2 from 2, complete sequence. ----isReversed: 1 ----hitSequence: ACGCUCCCUUCAGCAGCACAUAUACUAAAAUUGGAAUGAUACGGUAAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAUAUUCGUUAGGCAUUCCAUAUUUUA hit 518 : 175309 175206 (rev) 82.42 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :::C: UUC :G:::AU+U+CUAAAAUUGGAA GAUAC G AUUAGCAUGGC 9826 ACGCUcccUUCAgcAGCACAUAUACUAAAAUUGGAAUGAUACGG---UAAUUAGCAUGGC 9882 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCAUA+UCG A++ +UUCCA AUUUU 9883 CCCUGCGCAAGGAUGACACGCAUAUUCGUUAGGCAUUCCAUAUUUUA 9929 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1940,sp|AC007923.7|AC007923 Homo sapiens chromosome 17, clone RP11-805L22, complete sequence. ----isReversed: 1 ----hitSequence: GCGCUCACUACACAUGUACUAAAAUUAGAAUGACACAGAGUAGAUUAUCAUGGUCCCUGUGCAGGGAUGAUACACACAUUCAUGAAGGAUUCCAUAUUUUU hit 519 : 77598 77498 (rev) 67.58 bits <<<<<____>.>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGg.GgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 G:: UC ::CAU U+CUAAAAUU GAA GA ACAGAG AGAUUA CAUGG CCCU 102673 GCGC--UCACuACACAUGUACUAAAAUUAGAAUGACACAGAGUAGAUUAUCAUGGUCCCU 102730 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 G GCA GGAUGA AC CA A+UC GAA+ +UUCCA AUUUUU 102731 GUGCAGGGAUGAUACACACAUUCAUGAAGGAUUCCAUAUUUUU 102773 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1968,sp|AC007999.13|AC007999 Homo sapiens 3q25-26 BAC CTB-177N7 (California Institute of Technology BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUUGGCAGCACGUAUACUAAAAUUGGAACAAUACAGAGAUUAGCAUGGCCCUUUUGCAAGGGUGAUACCCAAAUUUGUGAAGUGUUCCGUAUAUUG hit 520 : 67988 67885 (rev) 68.19 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:AC U+U+CUAAAAUUGGAAC+AUACAGA GAUUAGCAUGGC 12927 GUGCUugcUUUGgcAGCACGUAUACUAAAAUUGGAACAAUACAGA---GAUUAGCAUGGC 12983 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC U GCAAGG UGA AC CA+A+U G GAA+UGUUCC AU UU 12984 CCUUUUGCAAGGGUGAUACCCAAAUUUGUGAAGUGUUCCGUAUAUUG 13030 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2000,sp|AC008064.2|AC008064 Homo sapiens BAC clone RP11-178E24 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUGGCUUCAGCGGCACAGAUGCUAACAUUGGAGCGAUACAGAGAAGACUAGCGUGGCCGCUGCGCAAGCAUGACACGCAAACUCAUAAAGCAUUCUUUUAAUUUUU hit 521 : 29744 29636 (rev) 73.31 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACA +UGCUAA AUUGGA CGAUACAGAGAAGA UAGC UGGC 142836 GUGCUggcUUCAgcGGCACAGAUGCUAACAUUGGAGCGAUACAGAGAAGACUAGCGUGGC 142895 ::::::::::::::::::::::::::::::::::..::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU..gUUCCaaaUUUUU 102 C CUGCGCAAG AUGACACGCA+A UC AA+ + U AAUUUUU 142896 CGCUGCGCAAGCAUGACACGCAAACUCAUAAAGCauUCUUUUAAUUUUU 142944 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2042,sp|AC008134.3|AC008134 Homo sapiens 3q26.2-27 BAC RPCI11-263C16 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCAGCACCACAUAUACUAAAAUUGGAAUGACACAGAGAAGAUUAGUGUGGUCCCUGUGCAAGGAUGACAUGCAAAUUCUUGAAGCAUUCCAUAUUUUU hit 522 : 19925 19819 (rev) 94.33 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUC : :ACAU+U+CUAAAAUUGGAA GA ACAGAGAAGAUUAG UGG 155208 GUGCUugcUUCAgcACCACAUAUACUAAAAUUGGAAUGACACAGAGAAGAUUAGUGUGGU 155267 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UC GAA+ +UUCCA AUUUUU 155268 CCCUGUGCAAGGAUGACAUGCAAAUUCUUGAAGCAUUCCAUAUUUUU 155314 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2068,sp|AC008180.15|AC008180 Homo sapiens 3 BAC RP11-292L5 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: UUGCUUUGGUAGCACAUGUACUAUAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCUCUGUGAAAGGAUGACAUGCAAAUUUGUGAAGCAUAUUUUUU hit 523 : 66140 66042 (rev) 84.15 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U:C:UU G :G:A:AU U+CUA AAUUGGAA GAUACAGAGAAGAUUAGCAUGGCC CU 126896 UUGCUUUGGuAGCACAUGUACUAUAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCUCU 126955 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 G G AAGGAUGACA+GCA+A+U G GAA+ +U+ UUUU 126956 GUGAAAGGAUGACAUGCAAAUUUGUGAAGCAUAUU----UUUU 126994 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2099,sp|AC008382.6|AC008382 Homo sapiens chromosome 5 clone CTC-218P2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUUGGCAGCAUAUAUACUAAAAUUGGAUUGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAAGAUGACAUGCAAAUUUGUGAAGCAUUCCAUAUUUUU hit 524 : 91874 91980 (fwd) 106.06 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UU G :G:A AU+U+CUAAAAUUGGA GAUACAGAGAAGAUUAGCAUGGC 91874 GUGCUcacUUUGgcAGCAUAUAUACUAAAAUUGGAUUGAUACAGAGAAGAUUAGCAUGGC 91933 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAA GAUGACA+GCA+A+U G GAA+ +UUCCA AUUUUU 91934 CCCUGCACAAAGAUGACAUGCAAAUUUGUGAAGCAUUCCAUAUUUUU 91980 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2103,sp|AC008386.6|AC008386 Homo sapiens chromosome 8 clone CTC-227M20, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCGGCUGCACAUAUCCUAAAAUUGGAACAAUACAGAGAAAAUUAGCAUGGCCCCUGCAUAGGGACGCUGCACAAAUUUUUGAAGCAUUCCAUAUUUUG hit 525 : 1366 1472 (fwd) 82.96 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C UUCG G:ACAU+U CUAAAAUUGGAAC+AUACAGAGAA AUUAGCAUGGC 1366 GUGCUugcUUCGgcUGCACAUAUCCUAAAAUUGGAACAAUACAGAGAAAAUUAGCAUGGC 1425 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC A GGA G C CA+A+U GAA+ +UUCCA AUUUU 1426 CCCUGCAUAGGGACGCUGCACAAAUUUUUGAAGCAUUCCAUAUUUUG 1472 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2178,sp|AC008488.7|AC008488 Homo sapiens chromosome 5 clone CTC-424O12, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAACUGGAGCCACACAGAAAAUUAGCAUGGACCCUGUGCAAGGAGGACAUGCAAAUUUGUGAAAUGUUCUAUAAUUUU hit 526 : 93834 93938 (fwd) 74.05 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAA UGGA C A ACAGA A AUUAGCAUGG 93834 GUGCUcgcUUCAgcAGCACAUAUACUAAAACUGGAGCCACACAGAAA--AUUAGCAUGGA 93891 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGA GACA+GCA+A+U G GAAAUGUUC A A UUUU 93892 CCCUGUGCAAGGAGGACAUGCAAAUUUGUGAAAUGUUCUAUAAUUUU 93938 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2239,sp|AC008560.6|AC008560 Homo sapiens chromosome 5 clone CTC-534A2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAAUAAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGUGAAGUGUGCCAUAUUUUU hit 527 : 78326 78426 (fwd) 92.80 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA + AGAAGAUUAGCAUGGC 78326 GUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAAUA------AGAAGAUUAGCAUGGC 78379 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+U G GAA+UGU CCA AUUUUU 78380 CCCUGUGCAAGGAUGACACACAAAUUUGUGAAGUGUGCCAUAUUUUU 78426 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2292,sp|AC008629.7|AC008629 Homo sapiens chromosome 5 clone CTB-161M19, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCAGCACAUAUACAAAAAUUGGAAUGAUACAGAGAAGAUUAACAUGGCCACUGCACAAGGAUGACAUGAAGGAAUUAAAAAUUUUAAAAAAAGAAAAACUUCACUGAGUAAUGUGAACAUUUUU hit 528 : 97624 97759 (fwd) 69.80 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+C AAAAUUGGAA GAUACAGAGAAGAUUA CAUGGC 97624 GUGCUcacUUCAgcAGCACAUAUACAAAAAUUGGAAUGAUACAGAGAAGAUUAACAUGGC 97683 ::::::::::::::::::::::::::::::::::.......................... 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU.......................... 89 C CUGC CAAGGAUGACA+G A A+ A AAAU 97684 CACUGCACAAGGAUGACAUGAAGGAAUUAAAAAUuuuaaaaaaagaaaaacuucacugag 97743 ...::::::::::::: 90 ...gUUCCaaaUUUUU 102 + U A AUUUUU 97744 uaaUGUGAACAUUUUU 97759 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2322,sp|AC008665.6|AC008665 Homo sapiens chromosome 5 clone CTB-34L8, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUAUUAAAACUGAAACAAUACAGAGAAGACUAGCAUGGUCCCUGCACAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU hit 529 : 10281 10175 (rev) 109.04 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+ UAAAA UG AAC+AUACAGAGAAGA UAGCAUGG 123049 GUGCUcgcUUUGgcAGCACAUAUAUUAAAACUGAAACAAUACAGAGAAGACUAGCAUGGU 123108 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACA+GCA+A+UC GAA+ +UUCCA AUUUUU 123109 CCCUGCACAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU 123155 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2324,sp|AC008667.10|AC008667 Homo sapiens chromosome 5 clone CTB-35F21, complete sequence. ----isReversed: 1 ----hitSequence: AUGCUUGCUUCAAUAGCACAUACACUAAAAUUGGAAUGACAUAGAGAAUAUUAGCAUGACCCUGUGCAAGGAUGACAUGCAAAUUCAUAAAGCAUUCCAUAUUUUU hit 530 : 12057 11952 (rev) 81.99 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUC :G:A:AU+++CUAAAAUUGGAA GA A AGAGAA AUUAGCAUG 176993 AUGCUugcUUCAauAGCACAUACACUAAAAUUGGAAUGACAUAGAGAAUAUUAGCAUG-- 177050 .::::::::::::::::::::::::::::::::::::::::::::::: 56 .CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UC AA+ +UUCCA AUUUUU 177051 aCCCUGUGCAAGGAUGACAUGCAAAUUCAUAAAGCAUUCCAUAUUUUU 177098 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2334,sp|AC008680.5|AC008680 Homo sapiens chromosome 5 clone CTB-53I9, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUAUUAAAACUGAAACAAUACAGAGAAGACUAGCAUGGUCCCUGCACAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU hit 531 : 225533 225427 (rev) 109.04 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+ UAAAA UG AAC+AUACAGAGAAGA UAGCAUGG 3513 GUGCUcgcUUUGgcAGCACAUAUAUUAAAACUGAAACAAUACAGAGAAGACUAGCAUGGU 3572 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACA+GCA+A+UC GAA+ +UUCCA AUUUUU 3573 CCCUGCACAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU 3619 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2473,sp|AC008854.3|AC008854 Homo sapiens chromosome 5 clone CTD-2177J2, complete sequence. ----isReversed: 1 ----hitSequence: AUGAGUGUUCAGCAUCACAUACACUAAAAUUGAAAUGAUACAGAAAAGAUUAGCAUGGCCCCUAAGCAAGGAUGACAUGCAAAUUUGUGAAGCAUUAUAUUUAUAUUGUU hit 532 : 115696 115587 (rev) 79.51 bits <<<<<..____..>>>>>:::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCC 56 :U:: UUC ::A:AU+++CUAAAAUUG AA GAUACAGA AAGAUUAGCAUGGCC 13843 AUGAGugUUCAgcAUCACAUACACUAAAAUUGAAAUGAUACAGAAAAGAUUAGCAUGGCC 13902 :::::::::::::::::::::::::::::::::....::::::::::::: 57 CCUGCGCAAGGAUGACACGcauAaUCGAGAaaU....gUUCCaaaUUUUU 102 CCU GCAAGGAUGACA+GCA+A+U G GAA+ + U A AUU UU 13903 CCUAAGCAAGGAUGACAUGCAAAUUUGUGAAGCauuaUAUUUAUAUUGUU 13952 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2541,sp|AC008942.6|AC008942 Homo sapiens chromosome 5 clone CTD-2320O4, complete sequence. ----isReversed: 1 ----hitSequence: UUGCUCGCUUUGGCAGCACAUAUACUGAAACUGGAAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAGGAAGACAUGCGGAUUCGAGAUGCAUUCCACUUUU hit 533 : 76393 76292 (rev) 74.19 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UU G :G:A:AU+U+CU AAA UGGAA AUACAGAGAAGAUUAGCAUGGC 72525 UUGCUcgcUUUGgcAGCACAUAUACUGAAACUGGAA--AUACAGAGAAGAUUAGCAUGGC 72582 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCA GGA GACA+GC A+UCGAGA + +UUCCA UUUU 72583 CCCUGCGCA-GGAAGACAUGCGGAUUCGAGAUGCAUUCCAC--UUUU 72626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2547,sp|AC008949.9|AC008949 Homo sapiens chromosome 5 clone CTD-2335O24, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAUCACAUAUACUAAAAUUGGAAGGACACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUUCAUAUUUUU hit 534 : 11761 11867 (fwd) 117.18 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUC : :ACAU+U+CUAAAAUUGGAA GA ACAGAGAAGAUUAGCAUGGC 11761 GUGCUcgcUUCAgcAUCACAUAUACUAAAAUUGGAAGGACACAGAGAAGAUUAGCAUGGC 11820 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ GUU CA AUUUUU 11821 CCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUUCAUAUUUUU 11867 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2568,sp|AC008971.6|AC008971 Homo sapiens chromosome 5 clone CTD-2376B17, complete sequence. ----isReversed: 0 ----hitSequence: AUGCUCGCUUUGGAAGCACAUAUACUAAUAUUGGACCGAUACAGAGAAGAUUAGCGUGGCCCCUGCUCAAGGAUGACAUGCAAAUCUGUGAAGCGUUCCAUUA hit 535 : 107468 107570 (fwd) 86.13 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UU G :G:A:AU+U+CUAA AUUGGA CGAUACAGAGAAGAUUAGC UGGC 107468 AUGCUcgcUUUGgaAGCACAUAUACUAAUAUUGGACCGAUACAGAGAAGAUUAGCGUGGC 107527 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACA+GCA+A+ G GAA+ GUUCC UU 107528 CCCUGCUCAAGGAUGACAUGCAAAUCUGUGAAGCGUUCC----AUUA 107570 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2611,sp|AC009030.9|AC009030 Homo sapiens chromosome 16 clone RP11-13G6, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUCUGGCAGCACACACACUAAACUUGGAAUGAUACAGAGAAGAUUAGCACGGCCUCUGUGCAAGGAUAACACACACAUUCAUGAAGCAUCCCAUAUUUUU hit 536 : 168673 168779 (fwd) 85.27 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U G :G:ACA +++CUAAA UUGGAA GAUACAGAGAAGAUUAGCA GGC 168673 GUGCUugcUCUGgcAGCACACACACUAAACUUGGAAUGAUACAGAGAAGAUUAGCACGGC 168732 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUG GCAAGGAU ACAC CA A+UC GAA+ +U CCA AUUUUU 168733 CUCUGUGCAAGGAUAACACACACAUUCAUGAAGCAUCCCAUAUUUUU 168779 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2641,sp|AC009075.7|AC009075 Homo sapiens chromosome 16 clone RP11-328J14, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCAGCAGCACAUAUGCUAAAAUUGGCACAACACAGAGAAGAUUAGCAUGAUUAGCAUGGCCCCCGUGCAAGGAUGACACACAAAUUUGUGAAGAAUUCCAUAUUUUU hit 537 : 184451 184566 (fwd) 98.08 bits <<<<<...____..>>>>>:::::::::::::::::::::::::::::::::........ 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUU........ 47 GU:C: UUC :G:ACAU+UGCUAAAAUUGG AC+A ACAGAGAAGAUU 184451 GUGCUugcUUCAgcAGCACAUAUGCUAAAAUUGGCACAACACAGAGAAGAUUagcaugau 184510 .::::::::::::::::::::::::::::::::::::::::::::::::::::::: 48 .AGCAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 AGCAUGGCCCC G GCAAGGAUGACAC CA+A+U G GAA+ +UUCCA AUUUUU 184511 uAGCAUGGCCCCCGUGCAAGGAUGACACACAAAUUUGUGAAGAAUUCCAUAUUUUU 184566 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2642,sp|AC009077.7|AC009077 Homo sapiens chromosome 16 clone RP11-331B16, complete sequence. ----isReversed: 0 ----hitSequence: AUGCUCGCUUCAGCAACACAUAUACUAAAAUUGGAACUAUACAGAGAAGAUGAGCACAGCCCCUUGUGCAAGGAUGACAUGCAAAUCCAUGAAGCGUUCCAUAUUUGU hit 538 : 86756 86863 (fwd) 84.61 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U: : UUC : :A:AU+U+CUAAAAUUGGAAC AUACAGAGAAGAU AGCA GC 86756 AUGCUcgcUUCAgcAACACAUAUACUAAAAUUGGAACUAUACAGAGAAGAUGAGCACAGC 86815 ::::.::::::::::::::::::::::::::::::::::::::::::: 56 CCCU.GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU G GCAAGGAUGACA+GCA+A+ C GAA+ GUUCCA AUUU U 86816 CCCUuGUGCAAGGAUGACAUGCAAAUCCAUGAAGCGUUCCAUAUUUGU 86863 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2658,sp|AC009097.9|AC009097 Homo sapiens chromosome 16 clone RP11-432I5, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGGCAGCACAUGUACUAAAAUUGGAACGAUAUAGAGAAGAUUAGCAUGGACCCUGAGCAAGGAUGACAGGCAAAUUUGUGAACCAUUCCGUAUUA hit 539 : 126872 126976 (fwd) 84.94 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU U+CUAAAAUUGGAACGAUA AGAGAAGAUUAGCAUGG 126872 GUGCUugcUUUGgcAGCACAUGUACUAAAAUUGGAACGAUAUAGAGAAGAUUAGCAUGGA 126931 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA GCA+A+U G GAA +UUCC +U UU 126932 CCCUGAGCAAGGAUGACAGGCAAAUUUGUGAACCAUUCC--GUAUUA 126976 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2670,sp|AC009118.11|AC009118 Homo sapiens chromosome 16 clone RP11-481J2, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCCCCAGCAGCACAUAUACCAAAAUUGGAAUGAUACAGAGAAGAUGAGCACGACCCCUGUACAAGAAUGACCCACAUAUUCGUGAAGCCUUCCAUACUUAA hit 540 : 51663 51557 (rev) 69.29 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: G :G:ACAU+U+C AAAAUUGGAA GAUACAGAGAAGAU AGCA G C 136326 GUGCUcgccCCAGcAGCACAUAUACCAAAAUUGGAAUGAUACAGAGAAGAUGAGCACGAC 136385 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG CAAG AUGAC C CAUA+UCG GAA+ UUCCA A UU 136386 CCCUGUACAAGAAUGACCCACAUAUUCGUGAAGCCUUCCAUACUUAA 136432 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2679,sp|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAACGUGGCCCCUGAGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 541 : 48914 49020 (fwd) 115.34 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUA C UGGC 48914 GUGCUcgcUUCAgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAACGUGGC 48973 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 48974 CCCUGAGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 49020 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2690,sp|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551E2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUAGUUGGAAUGAUAGAGAAGAUUUGCAUGGCCCCUGCGCAAGAUGACAUACAAAUUCGUGAAGUGUUCCAUAUUUAA hit 542 : 79506 79604 (fwd) 72.87 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+ UUGGAA GAUA GAGAAGAUU GCAUGGC 79506 GUGCUcgcUUCGgcAGCACAUAUAG-----UUGGAAUGAUA--GAGAAGAUUUGCAUGGC 79558 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAA GAUGACA+ CA+A+UCG GAA+UGUUCCA AUUU 79559 CCCUGCGCAA-GAUGACAUACAAAUUCGUGAAGUGUUCCAUAUUUAA 79604 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2722,sp|AC009220.10|AC009220 Homo sapiens chromosome 7 clone RP11-365F18, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCAGCGGCACAUAUACUAAAACUGGAAUGAUACAGAGAUUAGCACCACCCCUGCGCAAAGAUGAUACACAAAAUUGUGCAGCGUUCUAUAUUUUU hit 543 : 164105 164002 (rev) 73.09 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAA UGGAA GAUACAGA GAUUAGCA C 20416 GUGCUugcUUCAgcGGCACAUAUACUAAAACUGGAAUGAUACAGA---GAUUAGCACCAC 20472 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAA GAUGA AC CA+AAU G G A+ GUUC A AUUUUU 20473 CCCUGCGCAAAGAUGAUACACAAAAUUGUGCAGCGUUCUAUAUUUUU 20519 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2730,sp|AC009229.5|AC009229 Homo sapiens BAC clone RP11-314C9 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGUACAUGUACUAAAACUGGAACAAUACAGAGAACAUUAGCACGGCCCCUUCACAAGGAUGACACACAAAUUUAUGCAGCAUUCCAUAAUUUC hit 544 : 113888 113782 (rev) 85.15 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUCG :G ACAU U+CUAAAA UGGAAC+AUACAGAGAA AUUAGCA GGC 95269 GUGCUcgcUUCGgcAGUACAUGUACUAAAACUGGAACAAUACAGAGAACAUUAGCACGGC 95328 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU C CAAGGAUGACAC CA+A+U G A+ +UUCCA A UUU 95329 CCCUUCACAAGGAUGACACACAAAUUUAUGCAGCAUUCCAUAAUUUC 95375 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2767,sp|AC009292.11|AC009292 Homo sapiens chromosome 15, clone RP11-34F13, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 545 : 155721 155615 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 27135 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 27194 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 27195 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 27241 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2793,sp|AC009321.18|AC009321 Homo sapiens 12 BAC RP11-392B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: UCGCUUCAGAAGCAUAUACACAAAAAUUGGAACCCUACAGAAAAGAUUAACAUGGCCCCUGCACAACGAUGACAUGCAAAUUCAUGAAGCAAUCCACAUUUUU hit 546 : 6975 6873 (rev) 81.14 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :::C:U G :G:::AU+++C AAAAUUGGAAC UACAGA AAGAUUA CAUGGCCCCU 81772 UCGCUUCAGaAGCAUAUACACAAAAAUUGGAACCCUACAGAAAAGAUUAACAUGGCCCCU 81831 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GC CAA GAUGACA+GCA+A+UC GAA+ + UCCA AUUUUU 81832 GCACAACGAUGACAUGCAAAUUCAUGAAGCAAUCCACAUUUUU 81874 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2904,sp|AC009570.13|AC009570 Homo sapiens chromosome 4, clone RP11-46J23, complete sequence. ----isReversed: 0 ----hitSequence: GUACUCACUUCAGCAGCACAUAAACUAAAAUUGGAACGAUACAGAAAAGAUUAACAUUUCCCUGCACGAGAAUGACCUGCAAAUUUGUGAAGUGUUCCAUAUU hit 547 : 104747 104849 (fwd) 70.63 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUC :G ACAU+ +CUAAAAUUGGAACGAUACAGA AAGAUUA CAU 104747 GUACUcacUUCAgcAGCACAUAAACUAAAAUUGGAACGAUACAGAAAAGAUUAACAUUU- 104805 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC C AG AUGAC +GCA+A+U G GAA+UGUUCCA U UU 104806 CCCUGCACGAGAAUGACCUGCAAAUUUGUGAAGUGUUCCA---UAUU 104849 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2904,sp|AC009570.13|AC009570 Homo sapiens chromosome 4, clone RP11-46J23, complete sequence. ----isReversed: 1 ----hitSequence: GUGAUCUCUUCAGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAUUAGCAUGGUUCCCGUACAAGGAUGAUACACAAAUUUGUGAAGUGUUCUAUAUUUUU hit 548 : 106115 106012 (rev) 78.58 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UUC :::ACAU+U+CUAAAAUUGGAA GAUACAGA GAUUAGCAUGG 74482 GUGAUcucUUCAgcAGCACAUAUACUAAAAUUGGAAUGAUACAGA---GAUUAGCAUGGU 74538 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC G CAAGGAUGA AC CA+A+U G GAA+UGUUC A AUUUUU 74539 UCCCGUACAAGGAUGAUACACAAAUUUGUGAAGUGUUCUAUAUUUUU 74585 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2939,sp|AC009717.15|AC009717 Homo sapiens chromosome 18, clone RP11-534N16, complete sequence. ----isReversed: 0 ----hitSequence: GUACUCGCUUCAGUAGCACGUAUACUAAAAUUAGAACUAUAUAGAGAACAUUAGGAUUGCCCCUGCACAGGAUGAUACGCAAAUUGGUCAAGUGUUUCAUCUUUUU hit 549 : 28699 28804 (fwd) 68.83 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUC :G AC U+U+CUAAAAUU GAAC AUA AGAGAA AUUAG AU GC 28699 GUACUcgcUUCAguAGCACGUAUACUAAAAUUAGAACUAUAUAGAGAACAUUAGGAUUGC 28758 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CA GGAUGA ACGCA+A+U G AA+UGUU CA UUUUU 28759 CCCUGCACA-GGAUGAUACGCAAAUUGGUCAAGUGUUUCAUCUUUUU 28804 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2987,sp|AC009879.8|AC009879 Homo sapiens, clone RP11-346I3, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCCUCAGCAACACAUACACUAAAAUUGAAAUGAUACAGAGAAGAUUAGCAUGGCCACUGUGCAAGGGUAACACGCAAAUUCAUGAAGUAUUCUGUAUUUUU hit 550 : 24560 24666 (fwd) 83.80 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : U G : :ACAU+++CUAAAAUUG AA GAUACAGAGAAGAUUAGCAUGGC 24560 GUGCUugccUCAGcAACACAUACACUAAAAUUGAAAUGAUACAGAGAAGAUUAGCAUGGC 24619 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUG GCAAGG U ACACGCA+A+UC GAA+U+UUC AUUUUU 24620 CACUGUGCAAGGGUAACACGCAAAUUCAUGAAGUAUUCUGUAUUUUU 24666 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2990,sp|AC009891.2|AC009891 Genomic Sequence for Homo sapiens clone H_NH0332F09, Chromosome 18, complete sequence. ----isReversed: 1 ----hitSequence: GUGGUCACUUCGGAAGCACAUAUAUUAAAAUCGUAAUGAUACAGAGAAGAUUAGCAUGGCCUCUGCACAAGGAUGACACGCACGUUUGUGAAGUUUUCCUAUUUUUC hit 551 : 73051 72945 (rev) 93.96 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+ UAAAAU G AA GAUACAGAGAAGAUUAGCAUGGC 121623 GUGGUcacUUCGgaAGCACAUAUAUUAAAAUCGUAAUGAUACAGAGAAGAUUAGCAUGGC 121682 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUGC CAAGGAUGACACGCA +U G GAA+U+UUCC A UUUU 121683 CUCUGCACAAGGAUGACACGCACGUUUGUGAAGUUUUCCUAUUUUUC 121729 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3023,sp|AC009973.10|AC009973 Homo sapiens BAC clone RP11-457P23 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GUGUUCGCUUUGGCAGCACAUAUACUAAAACUAGAACUAUACAGGGAAGAUUAGAAUGGCCCCCGCGCAAGGAUGACAUGGAAAUUCAUGGAGUGUUCCAUAUUUUU hit 552 : 159320 159426 (fwd) 88.58 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UU G :::ACAU+U+CUAAAA U GAAC AUACAG GAAGAUUAG AUGGC 159320 GUGUUcgcUUUGgcAGCACAUAUACUAAAACUAGAACUAUACAGGGAAGAUUAGAAUGGC 159379 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC GCGCAAGGAUGACA+G A+A+UC G A+UGUUCCA AUUUUU 159380 CCCCGCGCAAGGAUGACAUGGAAAUUCAUGGAGUGUUCCAUAUUUUU 159426 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3025,sp|AC009975.9|AC009975 Homo sapiens BAC clone RP11-460M2 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUACGGCAGCACAUAUACUAAAACUGGAACAAUACAGAGAAGACCAGCAAGACCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU hit 553 : 11980 11875 (rev) 87.88 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: U CG :G:ACAU+U+CUAAAA UGGAAC+AUACAGAGAAGA AGCA G 199326 GUGCUcacUACGgcAGCACAUAUACUAAAACUGGAACAAUACAGAGAAGACCAGCA-AGA 199384 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UC GAA+ +UUCCA AUUUUU 199385 CCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU 199431 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3047,sp|AC010084.3|AC010084 Homo sapiens BAC clone RP11-145J12 from Y, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCAUUUCAGAAGCACAUAUACUAAAAUUAGAACAAUACAGAGAAGUUUAGAAUGCCCCCUGGCAAAGAUAACAUGCAAAUAUAUGAAGCAUUCUGUAUUUGU hit 554 : 87669 87564 (rev) 71.96 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUU GAAC+AUACAGAGAAG UUAG AUG C 61471 GUGCUcauUUCAgaAGCACAUAUACUAAAAUUAGAACAAUACAGAGAAGUUUAGAAUGCC 61530 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAA GAU ACA+GCA+A++ GAA+ +UUC AUUU U 61531 CCCUG-GCAAAGAUAACAUGCAAAUAUAUGAAGCAUUCUGUAUUUGU 61576 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3056,sp|AC010093.8|AC010093 Homo sapiens BAC clone RP11-323O5 from 2, complete sequence. ----isReversed: 1 ----hitSequence: ACGCUUCCCUCAGCAGCACAUAUACUAAAACUGGACUGAUACAGAGAAGAUUAGCAUGGUCCCUGCACAAGGAUAACACGCAAAUUCAUGAAGCAUUCCAUGUUUAA hit 555 : 70237 70131 (rev) 83.54 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :::C: U G :G:::AU+U+CUAAAA UGGA GAUACAGAGAAGAUUAGCAUGG 90694 ACGCUucccUCAGcAGCACAUAUACUAAAACUGGACUGAUACAGAGAAGAUUAGCAUGGU 90753 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAU ACACGCA+A+UC GAA+ +UUCCA +UUU 90754 CCCUGCACAAGGAUAACACGCAAAUUCAUGAAGCAUUCCAUGUUUAA 90800 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3076,sp|AC010135.3|AC010135 Homo sapiens BAC clone RP11-128D13 from Y, complete sequence. ----isReversed: 1 ----hitSequence: UUGCUUUAGCAGCAUAUAUACUAAAGUUGGAAUGAUACAGGAAAAAUUAGUAUGAUCCCAGCACAAAGAUGACAUGCAAAUUCAUGAAGCAUUCAAUAUUUUU hit 556 : 30672 30570 (rev) 69.52 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U:C:UU G :G:A:AU+U+CUAAA UUGGAA GAUACAG AA AUUAG AUG CCC 146280 UUGCUUUAGcAGCAUAUAUACUAAAGUUGGAAUGAUACAGGAAAAAUUAGUAUGAUCCCA 146339 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GC CAA GAUGACA+GCA+A+UC GAA+ +UUC A AUUUUU 146340 GCACAAAGAUGACAUGCAAAUUCAUGAAGCAUUCAAUAUUUUU 146382 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3079,sp|AC010138.6|AC010138 Homo sapiens BAC clone RP11-175H4 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GUACUCACUUCAGAAGCACAUAUAUUAACAUUGGAAUGAUACAGAGAAGAUUAGCAUGGUCUCUGUGCAAGGAUGACACGCAAAUUCCUGAAGCAUUCCAUAUUUUU hit 557 : 12511 12617 (fwd) 100.42 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UUC :G ACAU+U+ UAA AUUGGAA GAUACAGAGAAGAUUAGCAUGG 12511 GUACUcacUUCAgaAGCACAUAUAUUAACAUUGGAAUGAUACAGAGAAGAUUAGCAUGGU 12570 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUG GCAAGGAUGACACGCA+A+UC GAA+ +UUCCA AUUUUU 12571 CUCUGUGCAAGGAUGACACGCAAAUUCCUGAAGCAUUCCAUAUUUUU 12617 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3090,sp|AC010149.8|AC010149 Homo sapiens BAC clone RP11-395A23 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AUGCUUGUUUCGGCAACACAUACACUAAAAUCGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCACUAGGAUAACACAUAAAUUUGUAAAACACUCCAUUA hit 558 : 147601 147703 (fwd) 73.69 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U: : UUCG : :A:AU+++CUAAAAU GGAAC+AUACAGAGAAGAUUAGCAUGGC 147601 AUGCUuguUUCGgcAACACAUACACUAAAAUCGGAACAAUACAGAGAAGAUUAGCAUGGC 147660 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC C AGGAU ACAC A+A+U G AAA + UCC UU 147661 CCCUGCACUAGGAUAACACAUAAAUUUGUAAAACACUCC----AUUA 147703 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3129,sp|AC010218.7|AC010218 Homo sapiens chromosome 5 clone CTC-214C18, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUAUUAAAACUGAAACAAUACAGAGAAGACUAGCAUGGUCCCUGCACAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU hit 559 : 40120 40014 (rev) 109.04 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+ UAAAA UG AAC+AUACAGAGAAGA UAGCAUGG 57272 GUGCUcgcUUUGgcAGCACAUAUAUUAAAACUGAAACAAUACAGAGAAGACUAGCAUGGU 57331 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACA+GCA+A+UC GAA+ +UUCCA AUUUUU 57332 CCCUGCACAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUU 57378 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3130,sp|AC010219.4|AC010219 Homo sapiens chromosome 5 clone CTC-251I16, complete sequence. ----isReversed: 1 ----hitSequence: AGGCUCACUUUGGCAGCUCAUACACUAAAACUGGAGCCAUACAGAAAAGAUUAGCAUGGCUCCUGUGCAAGUAUGACAUGCAAAUUCAUGAGAAUUCCAUAUUUUA hit 560 : 16773 16668 (rev) 72.61 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 : :C: UU G :G: :AU+++CUAAAA UGGA C AUACAGA AAGAUUAGCAUGGC 111150 AGGCUcacUUUGgcAGCUCAUACACUAAAACUGGAGCCAUACAGAAAAGAUUAGCAUGGC 111209 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUG GCAAG AUGACA+GCA+A+UC GA+A +U