Params: ./cmzasha --no-stderr --filter 200 66 Rfam/cm/RF00026.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00026_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: recycle.cs.washington.edu pid: 29175 ----cmFile: Rfam/cm/RF00026.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #9201,sp|AF053588.1|AF053588 Nosema locustae U6 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: UGCAGUUUGCUGCGCUAUUAGUUUGGAACAACACUGAGAAGAUUAGCAUGGCCCCUGCGCAAGGACGGCAUCUUUCUUUGAGAGGUGUGCUGGGCUCGCCCAGCUUUU hit 0 : 116 223 (fwd) 89.66 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 ::C:+UU G+:G:: U+U UUGGAAC+A AC GAGAAGAUUAGCAUGGCCCCUG 116 UGCAGUUUGCUGCGCUAUUA---GUUUGGAACAACACUGAGAAGAUUAGCAUGGCCCCUG 172 :::::::::::::::::::::::::::::.........::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaU.........gUUCCaaaUUUUU 102 CGCAAGGA G CA+ +U +U GAGA++U + CC+A+ UUUU 173 CGCAAGGACGGCAUCUUUCUUUGAGAGGUgugcugggcUCGCCCAGCUUUU 223 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #44263,sp|AY136823.1|AY136823 Aspergillus niger U6 small nuclear RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUCCGUUGUAACAGCCUUUGGACAUAUGCUCGACAUUGCUAAAUUGGAACGAUACAGAGACGAUAGCAUGUCCCCUGCGCAAGGAUGACGUUACAAAUCGAGAUAUUCGUUUUAGGCUUUU hit 1 : 412 532 (fwd) 92.73 bits <<<<<...........____>>>>>::::::.........:::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgc.........UAAAAUUGGAACgAUACAGA 40 GUCC: UU :GGACAU+UGC AAAUUGGAACGAUACAGA 412 GUCCGuuguaacagccUU--UGGACAUAUGCucgacauugCUAAAUUGGAACGAUACAGA 469 :::::::::::::::::::::::::::::::::::::::::::::::::..::::::::: 41 GAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU..gUUCCaaaU 98 GA GAU AGCAUG CCCCUGCGCAAGGAUGAC + +AAUCGAGA AU GUU A + 470 GACGAU-AGCAUGUCCCCUGCGCAAGGAUGACGUUACAAAUCGAGAUAUucGUUUUAGGC 528 :::: 99 UUUU 102 UUUU 529 UUUU 532 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58706,sp|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) ----isReversed: 1 ----hitSequence: UAGUUUUCUACCGCCAUUGAUUUGGAACAACACAGAGAAGAUUAGCAUGGCCCCUGCGUAAGGACGACAUGUAUAACUUGAGAGGUCGCUGGAUGUAGAUCCGGCUUUU hit 2 : 66611 66503 (rev) 79.41 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 : :: UUC :: : +U A UUGGAAC+A ACAGAGAAGAUUAGCAUGGCCCCUG 171537 UAGUUUUC-UACCGCCAUUG---AUUUGGAACAACACAGAGAAGAUUAGCAUGGCCCCUG 171592 :::::::::::::::::::::.::::::::..........::::::::::::: 61 CGCAAGGAUGACACGcauAaU.CGAGAaaU..........gUUCCaaaUUUUU 102 CG AAGGA GACA+G AUAA GAGA++U + + C+ + UUUU 171593 CGUAAGGACGACAUGUAUAACuUGAGAGGUcgcuggauguAGAUCCGGCUUUU 171645 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64936,sp|AL389901.1|NCB7F21 Neurospora crassa DNA linkage group II BAC clone B7F21 ----isReversed: 1 ----hitSequence: CGCCCUUCGGGGCAAUUUGGUCAAUUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACUAAGGAUGACACGCUACUCAAAGAGACGCUACCAAAUUUUU hit 3 : 34740 34637 (rev) 103.76 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :CCCUUCGGGG: AU UG U AA UUG AACGAUACAGAGAAGAUUAGCAUGGCCCCUG 24673 CGCCCUUCGGGGCAAUUUGGUCAAUUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 24732 :::.:::::::::::::::::::::::::::.:::::::::::: 61 CGC.AAGGAUGACACGcauAaUCGAGAaaUg.UUCCaaaUUUUU 102 C C AAGGAUGACACGC++ + AGA+A G U+CCAAAUUUUU 24733 CACuAAGGAUGACACGCUACUCAAAGAGACGcUACCAAAUUUUU 24776 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #69362,sp|X89514.1|SCCHXIILA S.cerevisiae DNA from chromosome XII right arm ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 4 : 2843 2955 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 2843 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 2902 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 2903 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 2955 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #70401,sp|U53878.1|SCL9354 Saccharomyces cerevisiae chromosome XII cosmid 9354. ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 5 : 1298 1410 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 1298 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 1357 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 1358 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 1410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #71645,sp|X12565.1|SCSNR6 Yeast SNR6 gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 6 : 540 652 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 540 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 599 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 600 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 652 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #74436,sp|Z73279.1|SCYLR107W S.cerevisiae chromosome XII reading frame ORF YLR107w ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 7 : 2843 2955 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 2843 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 2902 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 2903 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 2955 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #74437,sp|Z73280.1|SCYLR108C S.cerevisiae chromosome XII reading frame ORF YLR108c ----isReversed: 0 ----hitSequence: GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU hit 8 : 1298 1410 (fwd) 91.12 bits <<<<<...........____>>>>>::::::::::::::::::::::::::::::::::: 1 GucCc...........UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAG 49 GU:C: UUCG:G:ACAU UG U AA UUG AAC+AUACAGAGA GAU AG 1298 GUUCGcgaaguaacccUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAG 1357 ::::::::::::::::::::::::::::::::::::::::::::::::::::: 50 CAUGGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CA CCCCUGC AAGGAUGA CG +U A AGA+AU+U+ +UUUUU 1358 CAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUUU 1410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #76465,sp|Z98762.1|SPAC4A8 S.pombe chromosome I cosmid c4A8. ----isReversed: 1 ----hitSequence: UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCGAGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAAACCCAUUUUUU hit 9 : 24176 24025 (rev) 89.72 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::............. 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUU............. 47 ::::CUUCGG:::: U UG U AAAUUG AACGAUACAGAGAAGAUU 19720 UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUguaaguaacaaua 19779 .....................................::::::::::::::::::::::: 48 .....................................AGCAUGGCCCCUGCGCAAGGAUG 70 AGCAUGGCCCCUGC CAAGGAUG 19780 uuuaccaagguucgagucauacuaacucguuguuuagAGCAUGGCCCCUGCACAAGGAUG 19839 :::::::::::.::::::::::::::::::::: 71 ACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 ACAC A + GAGA+A + +CC+A UUUUU 19840 ACACUGCGACAuUGAGAGA-AAACCCAUUUUUU 19871 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #77616,sp|X14196.1|SPSNRNA Yeast U6 small nuclear RNA gene ----isReversed: 0 ----hitSequence: UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCGAGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAAACCCAUUUUUU hit 10 : 133 284 (fwd) 89.72 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::............. 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUU............. 47 ::::CUUCGG:::: U UG U AAAUUG AACGAUACAGAGAAGAUU 133 UGAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUguaaguaacaaua 192 .....................................::::::::::::::::::::::: 48 .....................................AGCAUGGCCCCUGCGCAAGGAUG 70 AGCAUGGCCCCUGC CAAGGAUG 193 uuuaccaagguucgagucauacuaacucguuguuuagAGCAUGGCCCCUGCACAAGGAUG 252 :::::::::::.::::::::::::::::::::: 71 ACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 ACAC A + GAGA+A + +CC+A UUUUU 253 ACACUGCGACAuUGAGAGA-AAACCCAUUUUUU 284 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #77788,sp|M55650.1|SPUGU6Q1 S.pombe U6 snRNA gene, partial exons 1 and 2. ----isReversed: 0 ----hitSequence: GAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCGAGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAAACCCAUUUU hit 11 : 1 149 (fwd) 81.64 bits <<<<<____>>>>>:.::::::::::::::::::::::::::::::::............ 1 GucCcUUCGgGgaCA.UcUgcUAAAAUUGGAACgAUACAGAGAAGAUU............ 47 G::C UUCG G::CA U UG U AAAUUG AACGAUACAGAGAAGAUU 1 GAUC-UUCG-GAUCAcUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUguaaguaacaau 58 ......................................:::::::::::::::::::::: 48 ......................................AGCAUGGCCCCUGCGCAAGGAU 69 AGCAUGGCCCCUGC CAAGGAU 59 auuuaccaagguucgagucauacuaacucguuguuuagAGCAUGGCCCCUGCACAAGGAU 118 ::::::::::::.::::::::::::::::::::: 70 GACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 GACAC A + GAGA+A + +CC+A UUUU 119 GACACUGCGACAuUGAGAGA-AAACCCA--UUUU 149 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5608,sp|AC008237.4|AC008237 Drosophila melanogaster, chromosome 3R, region 96A-96A, BAC clone BACR47D16, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 12 : 88424 88530 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 88424 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 88483 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 88484 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 88530 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5608,sp|AC008237.4|AC008237 Drosophila melanogaster, chromosome 3R, region 96A-96A, BAC clone BACR47D16, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 13 : 89028 89134 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 89028 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 89087 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 89088 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 89134 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5608,sp|AC008237.4|AC008237 Drosophila melanogaster, chromosome 3R, region 96A-96A, BAC clone BACR47D16, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 14 : 89551 89657 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 89551 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 89610 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 89611 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 89657 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6134,sp|AC024750.1|AC024750 Caenorhabditis elegans cosmid Y17G9A, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 15 : 32088 32189 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 32088 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 32147 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 32148 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 32189 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6134,sp|AC024750.1|AC024750 Caenorhabditis elegans cosmid Y17G9A, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 16 : 30012 29911 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 11324 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 11383 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 11384 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 11425 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6263,sp|AC024882.1|AC024882 Caenorhabditis elegans cosmid Y9C9A, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 17 : 21090 21191 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 21090 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 21149 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 21150 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 21191 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6344,sp|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCGAAUUUUU hit 18 : 37443 37544 (fwd) 128.55 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCA GGCCCCUG 37443 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGCCCCUG 37502 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCC AAUUUUU 37503 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCGAAUUUUU 37544 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6344,sp|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU hit 19 : 40175 40276 (fwd) 133.75 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 40175 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 40234 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAA UUUU 40235 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU 40276 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6344,sp|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19, complete sequence. ----isReversed: 0 ----hitSequence: UGUCGGUGCUUGAGGUGAAAGUUCUUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU hit 20 : 77156 77257 (fwd) 94.53 bits <<<<<...____>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 : :C U G G: :A + UUGGAAC+AUACAGAGAAGAUUAGCAUGGCCC 77156 UGUCGgugCUUGAGGUGAAAGUU---CUUUGGAACAAUACAGAGAAGAUUAGCAUGGCCC 77212 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAA UUUU 77213 CUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAACUUUU 77257 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6350,sp|AC084465.1|AC084465 Caenorhabditis briggsae cosmid CB039B01, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 21 : 35805 35704 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 46556 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 46615 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 46616 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 46657 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6352,sp|AC084467.1|AC084467 Caenorhabditis briggsae cosmid CB043F15, complete sequence. ----isReversed: 0 ----hitSequence: AUUUCUUCUGAACAUAUACUAAAAUUGGAAUAAUACAGAAUAUUAGCAUGGCCCCUGCGCAGGGAUGACACUCAAAUUUGUGACAUUUUUUCACAGAUUUUUUUCCACAUUUUU hit 22 : 46028 46141 (fwd) 80.11 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :U:: UUC ::A:AU+U+CUAAAAUUGGAA +AUAC AGAA AUUAGCAUGGCCCCUG 46028 AUUUCUUC-UGAACAUAUACUAAAAUUGGAAUAAUAC--AGAAUAUUAGCAUGGCCCCUG 46084 :::::::::::::::::::::::::::::...............::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaU...............gUUCCaaaUUUUU 102 CGCA GGAUGACAC CA+A+U G GA AU +UUCCA AUUUUU 46085 CGCAGGGAUGACACUCAAAUUUGUGACAUuuuuucacagauuuuUUUCCACAUUUUU 46141 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6352,sp|AC084467.1|AC084467 Caenorhabditis briggsae cosmid CB043F15, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 23 : 11401 11302 (rev) 126.01 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU++ UAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 45111 GUUCUUCCGAGAACAUAC--UAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 45168 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 45169 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 45210 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6465,sp|AC084580.1|AC084580 Caenorhabditis briggsae cosmid G40J14, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 24 : 20966 21067 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 20966 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 21025 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 21026 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 21067 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6465,sp|AC084580.1|AC084580 Caenorhabditis briggsae cosmid G40J14, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 25 : 24772 24873 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 24772 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 24831 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 24832 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 24873 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6484,sp|AC084599.1|AC084599 Caenorhabditis briggsae cosmid G42P09, complete sequence. ----isReversed: 1 ----hitSequence: GUCCUCCGUCGCCCAGGACCUGUGUUGGAACAAUACAGAGAAGACUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAUUUUUU hit 26 : 2628 2528 (rev) 99.68 bits <<<<<..____...>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG...gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GUCC: UCG :GGAC U UG UGGAAC+AUACAGAGAAGA UAGCAUGGC 41624 GUCCUccGUCGcccAGGACCUGUGU------UGGAACAAUACAGAGAAGACUAGCAUGGC 41677 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAA UUUUU 41678 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAUUUUUU 41724 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7764,sp|AE003748.3|AE003748 Drosophila melanogaster chromosome 3R, section 86 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 27 : 99119 99225 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99119 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99178 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 99179 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 99225 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7764,sp|AE003748.3|AE003748 Drosophila melanogaster chromosome 3R, section 86 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 28 : 99723 99829 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99723 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99782 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 99783 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 99829 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7764,sp|AE003748.3|AE003748 Drosophila melanogaster chromosome 3R, section 86 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 29 : 100246 100352 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 100246 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 100305 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 100306 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 100352 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #9216,sp|AF016427.2|AF016427 Caenorhabditis elegans cosmid F32D1, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUAACUUU hit 30 : 12941 13044 (fwd) 121.45 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 12941 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 13000 :::::::::::::::::::::::::::::::::::::::...::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUU...UUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAU UUU 13001 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAU-aacUUU 13044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #9824,sp|AF022975.2|AF022975 Caenorhabditis elegans cosmid K09C6, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 31 : 23345 23446 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 23345 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 23404 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 23405 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 23446 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11198,sp|AF038623.2|AF038623 Caenorhabditis elegans cosmid T08B6, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 32 : 9791 9690 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 25016 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 25075 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 25076 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 25117 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #13210,sp|AF067211.2|AF067211 Caenorhabditis elegans cosmid B0205, complete sequence. ----isReversed: 0 ----hitSequence: GCUCUUCCGAGAACAUAUACUAAAAUUGGACUAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUAACACGCAAAAGUAGACGUUCCAACCGACACGCCUCUUUA hit 33 : 18505 18613 (fwd) 78.11 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G::C:U CG:G::CAU+U+CUAAAAUUGGA +AUACAGAGAAGAUUAGCAUGGCCCCUG 18505 GCUCUUCCGAGAACAUAUACUAAAAUUGGACUAAUACAGAGAAGAUUAGCAUGGCCCCUG 18564 :::::::::::::::::::::::::::::........::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaU........gUUCCaaaUUUUU 102 CGCAAGGAU ACACGCA+AA AGA +U + +C + UUU 18565 CGCAAGGAUAACACGCAAAAGU-AGACGUuccaaccgACACGCCUCUUUA 18613 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #15493,sp|AF095841.1|AF095841 Entosiphon sulcatum U6 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACUUACACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCACGGUCCCUGGGCAAGGAUGACACACAAGUUCGUGAAGCGUUCCAUAUUUUU hit 34 : 1 107 (fwd) 107.83 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:AC U+++CUAAAAUUGGAA GAUACAGAGAAGAUUAGCA GG 1 GUGCUcgcUUUGgcAGCACUUACACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCACGGU 60 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+ +UCG GAA+ GUUCCA AUUUUU 61 CCCUGGGCAAGGAUGACACACAAGUUCGUGAAGCGUUCCAUAUUUUU 107 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #35290,sp|AF305715.1|AF305715 Leishmania tarentolae tRNA-Glu gene, partial sequence; and U6 small nuclear RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 35 : 117 214 (fwd) 88.47 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCC 117 GCCCCUUCGgGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCC 174 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 175 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 214 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #6466,sp|AF529186.1|AF529186 Taenia solium U6 snRNA and U5 snRNA genes, complete sequence. ----isReversed: 0 ----hitSequence: GUAUCUCCUCGGAGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUC hit 36 : 459 564 (fwd) 121.25 bits <<<<<..____..>>>>>:::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCC 56 GU::C UCG G::ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCC 459 GUAUCucCUCGgaGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCC 518 :::::::::::::::::::::::::::::::::::::::::::::: 57 CCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUU 519 CCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUC 564 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #13569,sp|L26849.1|ALSNRNAA Ascaris lumbricoides small nuclear RNA (snRNA) U6-2 gene. ----isReversed: 0 ----hitSequence: GUUCAUUCCGAUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 37 : 150 253 (fwd) 132.32 bits <<<<<____..>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 GU:C:UUC :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCC 150 GUUCAUUCCgaUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCC 209 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 210 UGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 253 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #13570,sp|L26850.1|ALSNRNAB Ascaris lumbricoides small nuclear RNA (snRNA) U6-3 gene. ----isReversed: 0 ----hitSequence: GUUCAUUCCGAUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUC hit 38 : 101 204 (fwd) 128.16 bits <<<<<____..>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 GU:C:UUC :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCC 101 GUUCAUUCCgaUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCC 160 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUU 161 UGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUC 204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #13575,sp|L22252.1|ALSNUE Ascaris lumbricoides small nuclear RNA (snRNA) U6-1 gene. ----isReversed: 0 ----hitSequence: GUUCAUUCCGAUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAGUUCGUGAAGCGUUCCAAAUUUUU hit 39 : 132 235 (fwd) 128.88 bits <<<<<____..>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 GU:C:UUC :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCC 132 GUUCAUUCCgaUGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCC 191 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGCA+ +UCG GAA+ GUUCCAAAUUUUU 192 UGCGCAAGGAUGACACGCAAGUUCGUGAAGCGUUCCAAAUUUUU 235 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #20452,sp|AY060382.1|AY060382 Drosophila melanogaster LD27504 full length cDNA. ----isReversed: 0 ----hitSequence: GAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 40 : 2 93 (fwd) 108.13 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 2 G----------AACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 51 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 52 CGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 93 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #22228,sp|AY069457.1|AY069457 Drosophila melanogaster LD18251 full insert cDNA. ----isReversed: 0 ----hitSequence: UUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 41 : 1 77 (fwd) 70.89 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 U UGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 ------U-------------------UGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 35 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 36 CGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 77 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43367,sp|Z32680.1|CEC28A5 Caenorhabditis elegans cosmid C28A5 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 42 : 1731 1630 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 25581 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 25640 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 25641 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 25682 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44019,sp|U53333.1|CEF36A4 Caenorhabditis elegans cosmid F36A4, complete sequence. ----isReversed: 0 ----hitSequence: UUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUAUAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 43 : 1100 1201 (fwd) 125.48 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :U:C:U CG:G:A:AU+U+CUAAAAUUGGAAC+AUA AGAGAAGAUUAGCAUGGCCCCUG 1100 UUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUAUAGAGAAGAUUAGCAUGGCCCCUG 1159 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 1160 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 1201 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44193,sp|Z22178.2|CEF54C8 Caenorhabditis elegans cosmid F54C8 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 44 : 12015 12116 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 12015 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 12074 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 12075 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 12116 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44193,sp|Z22178.2|CEF54C8 Caenorhabditis elegans cosmid F54C8 ----isReversed: 0 ----hitSequence: GUUCUUCCAAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 45 : 15673 15774 (fwd) 132.89 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U C :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 15673 GUUCUUCCAAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 15732 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 15733 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 15774 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44193,sp|Z22178.2|CEF54C8 Caenorhabditis elegans cosmid F54C8 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 46 : 13963 13862 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 9039 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 9098 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 9099 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 9140 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44197,sp|U12966.2|CEF54D8 Caenorhabditis elegans cosmid F54D8, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 47 : 5169 5068 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 31849 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 31908 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 31909 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 31950 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 48 : 23131 23232 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 23131 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 23190 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 23191 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 23232 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 49 : 24936 25037 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 24936 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 24995 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 24996 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 25037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 50 : 27779 27880 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 27779 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 27838 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 27839 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 27880 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 51 : 27530 27429 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 11272 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 11331 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 11332 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 11373 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 52 : 24687 24586 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 14115 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 14174 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 14175 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 14216 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44488,sp|Z83114.1|CEK09B11 Caenorhabditis elegans cosmid K09B11 ----isReversed: 1 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 53 : 19920 19819 (rev) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 18882 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 18941 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 18942 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 18983 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44900,sp|Z32683.1|CER07E5 Caenorhabditis elegans cosmid R07E5 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 54 : 21127 21228 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 21127 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 21186 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 21187 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 21228 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45034,sp|X51387.1|CESNU61 Caenorhabditis elegans DNA encoding U6-1 snRNA ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 55 : 158 259 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 158 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 217 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 218 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45035,sp|X51388.1|CESNU62 Caenorhabditis elegans DNA encoding U6-2 snRNA ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 56 : 158 259 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 158 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 217 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 218 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45215,sp|Z68220.1|CET20D3 Caenorhabditis elegans cosmid T20D3 ----isReversed: 0 ----hitSequence: GUUCCAAUUCUAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 57 : 8066 8169 (fwd) 123.72 bits <<<<<..____.>>>>>::::::::::::::::::::::::::::::::::::::::::: 1 GucCc..UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCC 57 GU:C UUC G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCC 8066 GUUCCaaUUC-uAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCC 8124 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGCGCA GGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 8125 CUGCGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 8169 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45215,sp|Z68220.1|CET20D3 Caenorhabditis elegans cosmid T20D3 ----isReversed: 1 ----hitSequence: AUUUUAGUAUAUGUUCUAGAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 58 : 8093 7996 (rev) 105.12 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :U UU G A:AU U CUA AAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 24587 AUU--UUAG--UAUAUGUUCUAGAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 24642 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCA GGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 24643 CGCACGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 24684 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45385,sp|X07829.1|CEU6 Caenorhabditis elegans U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 59 : 1 102 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 1 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 60 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 61 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 102 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45767,sp|Z81138.1|CEW05B2 Caenorhabditis elegans cosmid W05B2 ----isReversed: 0 ----hitSequence: GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU hit 60 : 34964 35065 (fwd) 135.23 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 GU:C:U CG:G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCCUG 34964 GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUG 35023 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCAAAUUUUU 35024 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUUU 35065 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46285,sp|X78551.1|CFRNAAC1 C.fasciculata U6 snRNA, tRNA-Ile and tRNA-Gln genes, clone AC1. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACCACCUGGAAAUUCAAUAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 61 : 329 426 (fwd) 79.62 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C A UGGAA A AGAGAAGAUUAGCA CCC 329 GCCCCUUCGgGGGACAUCCAC-CACC-UGGAAAUUCAaUAGAGAAGAUUAGCACUCUCCC 386 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 387 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 426 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #46286,sp|X78550.1|CFRNAE11 C.fasciculata U6 snRNA, tRNA-Ile and tRNA-Gln genes, clone E11. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACCACCUGGAAAUUCAAUAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 62 : 325 422 (fwd) 79.62 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C A UGGAA A AGAGAAGAUUAGCA CCC 325 GCCCCUUCGgGGGACAUCCAC-CACC-UGGAAAUUCAaUAGAGAAGAUUAGCACUCUCCC 382 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 383 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 422 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4722,sp|X06669.1|DMU6 Drosophila melanogaster U6 snRNA ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCAGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 63 : 2 108 (fwd) 129.10 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 2 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 61 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC GCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 62 CCCAGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 108 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4967,sp|M24605.1|DMURUB1 Drosophila melanogaster U6-1 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 64 : 96 202 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 96 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 155 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 156 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 202 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4968,sp|M24606.1|DMURUB2 Drosophila melanogaster U6-2 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 65 : 401 507 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 401 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 460 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 461 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 507 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4969,sp|M24607.1|DMURUC3 Drosophila melanogaster U6-3 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUGCUUCGGCAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 66 : 301 407 (fwd) 134.17 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 301 GUUCUugcUUCGgcAGAACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 360 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 361 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 407 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #7305,sp|U43841.1|EH43841 Entamoeba histolytica U6 small nuclear RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUCCACUUCGGUGGAAAUCCCAUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCUCAUACGAGAAGUUAAAAAGUUUUUU hit 67 : 336 439 (fwd) 117.61 bits <<<<<.____.>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCc.UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 :UCC: UUCG :GGA:AUC+ UAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGCCCC 336 AUCCAcUUCGgUGGAAAUCCCAUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCC 395 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGC+ A++CGAGAA+U+ + A UUUUU 396 UGCGCAAGGAUGACACGCUCAUACGAGAAGUUAAAAAGUUUUUU 439 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #10564,sp|X79014.1|LCSNTRNA L.collosoma snRNA-U6, tRNA-Gln and tRNA-Ile. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAACCUGGAACUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 68 : 475 572 (fwd) 88.13 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C AA UGGAAC A CAGAGAAGAUUAGCA CCC 475 GCCCCUUCGgGGGACAUCCAC-AACC-UGGAACUUCAaCAGAGAAGAUUAGCACUCUCCC 532 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 533 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 572 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11399,sp|X82228.1|LMU6SNRNA L.mexicana U6 snRNA and tRNA-Gln genes ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 69 : 412 509 (fwd) 88.47 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCC 412 GCCCCUUCGgGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCC 469 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 470 UGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 509 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11785,sp|X78552.1|LSRNA L.seymouri (ATCC 30220) U6 snRNA, tRNA-Ile and tRNA-Gln genes. ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAAUCUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 70 : 318 415 (fwd) 84.54 bits <<<<<____.>>>>>::::::::::::.::::::::::.::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAU.UGGAACgAUA.CAGAGAAGAUUAGCAUGGCCC 57 G:CCCUUCG GGG:CAUC++C AAU UGGAA A CAGAGAAGAUUAGCA CC 318 GCCCCUUCGgGGGACAUCCAC---AAUcUGGAAAUUCAaCAGAGAAGAUUAGCACUCUCC 374 ::::::::::::::::::::::::::::::::::::::::::::: 58 CUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUGCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 375 CUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 415 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #18408,sp|X82229.1|PSU6SNRNA Phytomonas sp. U6 snRNA and tRNA-Gln genes ----isReversed: 0 ----hitSequence: GCCCCUUCGGGGGACAUCCACAACCUGGAACUUCAACAGACAAGAUUAGCAUUCUCCCUGCGCAAGGCCGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 71 : 194 291 (fwd) 83.42 bits <<<<<____.>>>>>::::::::::::::::::::::.:::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCC 58 G:CCCUUCG GGG:CAUC++C AA UGGAAC A CAGA AAGAUUAGCAU CCC 194 GCCCCUUCGgGGGACAUCCAC-AACC-UGGAACUUCAaCAGACAAGAUUAGCAUUCUCCC 251 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGG GA + AU +UCGAGA+AU+U+ C UUUU 252 UGCGCAAGGCCGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 291 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21052,sp|L25920.1|SMU6RNAA Schistosoma mansoni U6 small nuclear RNA. ----isReversed: 0 ----hitSequence: GUACUCGCUUCGGCGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUUCGUGAAGCGUUCCAUAUUUU hit 72 : 3 109 (fwd) 125.47 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 3 GUACUcgcUUCGgcGGUACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 62 ::::::::::::::::::::::::::.::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAU CG GAA+ GUUCCA AUUUU 63 CCCUGCGCAAGGAUGACACGCAAAAUuCGUGAAGCGUUCCAUAUUUU- 109 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21349,sp|X76389.1|SPSNRNAU S.purpuratus U6.1 gene for small nuclear RNA ----isReversed: 0 ----hitSequence: GUGUUAGCUUCGGCAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU hit 73 : 1447 1553 (fwd) 129.94 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UUCG :::ACAUCU+ UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 1447 GUGUUagcUUCGgcAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 1506 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 1507 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU 1553 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21434,sp|X76546.1|SPU62SNR S.purpuratus U6.2 gene for U6 small nuclear RNA ----isReversed: 0 ----hitSequence: GUGUUAGCUUCGGCAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU hit 74 : 281 387 (fwd) 129.94 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UUCG :::ACAUCU+ UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 281 GUGUUagcUUCGgcAACACAUCUAUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 340 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 341 CCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCAUAUUUUU 387 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #22459,sp|X57046.1|TBTRNA3 Trypanosoma brucei tRNA-tyr, tRNA-thr & U6 snRNA genes ----isReversed: 0 ----hitSequence: GCCCUUCGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 75 : 441 536 (fwd) 86.61 bits <<<<<____>>>>>::::::::::::::::::::::.::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCCU 59 G:CC: UCG:GG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCCU 441 GCCCU-UCGGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCCU 497 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 498 GCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 536 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #22491,sp|X13017.1|TBU6RNA Trypanosoma brucei U6 small nuclear RNA gene ----isReversed: 0 ----hitSequence: GCCCUUCGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 76 : 157 252 (fwd) 86.61 bits <<<<<____>>>>>::::::::::::::::::::::.::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCCU 59 G:CC: UCG:GG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCCU 157 GCCCU-UCGGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCCU 213 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 214 GCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 252 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #22507,sp|M25778.1|TBURNAD Trypanosoma small nuclear RNA (uRNA D) gene. ----isReversed: 0 ----hitSequence: GCCCUUCGGGGACAUCCACAAACUGGAAAUUCAACAGAGAAGAUUAGCACUCUCCCUGCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGCUUUU hit 77 : 104 199 (fwd) 86.61 bits <<<<<____>>>>>::::::::::::::::::::::.::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUA.CAGAGAAGAUUAGCAUGGCCCCU 59 G:CC: UCG:GG:CAUC++C AAA UGGAA A CAGAGAAGAUUAGCA CCCU 104 GCCCU-UCGGGGACAUCCAC-AAAC-UGGAAAUUCAaCAGAGAAGAUUAGCACUCUCCCU 160 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCGCAAGG UGA + AU +UCGAGA+AU+U+ C UUUU 161 GCGCAAGGCUGAUGUCAAUCUUCGAGAGAUAUAGC----UUUU 199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24876,sp|X53789.1|TTRU6SNR T.tridentatus U6 snRNA genes (1 & 2) for U6 small nuclear RNAs (partial) ----isReversed: 0 ----hitSequence: AAAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU hit 78 : 1 80 (fwd) 77.95 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 AAUUG AACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 -------------------A---AAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 38 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+AAUCG GAA+ GUUCCA AUUUUU 39 CGCAAGGAUGACACGCAAAAUCGUGAAGCGUUCCACAUUUUU 80 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24887,sp|X63790.1|TTSNRU62 T.thermophila gene for snRNA U6-2 ----isReversed: 0 ----hitSequence: GCCCGAAAGGGCAUCUGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU hit 79 : 28 129 (fwd) 109.67 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 G:CC GG:CAUCUG UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 28 GCCCG-AA-AGGGCAUCUGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 85 :::.::::::::::::::::::.::::::::::::::::::::: 61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU 86 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 129 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24888,sp|X63791.1|TTSNRU63 T.thermophila genes for snRNA U6-3, snRNA U6-4 ----isReversed: 0 ----hitSequence: CCCGAAAGGGUCCUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU hit 80 : 1 102 (fwd) 102.36 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 CCC GGG+C UC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 --CCCGAAAGGGUCCUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 58 :::.::::::::::::::::::.::::::::::::::::::::: 61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU 59 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 102 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24929,sp|X58843.1|TTU61 T.thermophila U6.1 snRNA ----isReversed: 0 ----hitSequence: AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU hit 81 : 3 106 (fwd) 111.18 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 ::CCC GGG::AUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 3 AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 62 :::.::::::::::::::::::.::::::::::::::::::::: 61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102 CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU 63 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #2599,sp|AB054536.1|AB054536 Pan troglodytes LTB, TNF alpha, LTA, IKBL, ATP6G, BAT1, Patr-MIC and Patr-B genes, complete cds. ----isReversed: 1 ----hitSequence: GUACUCGCUUUGGCAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGCCCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA hit 82 : 124607 124501 (rev) 91.49 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+ UAAAAU GGAA GAUACAGAGAAGAU AGCA GGC 51678 GUACUcgcUUUGgcAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGC 51737 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU C CAAGG UGACA+GCA+A+UC GAA+ +UUCCA AUUUU 51738 CCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA 51784 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #3498,sp|AB064998.1|AB064998 Macaca fascicularis BBH mRNA for gamma butyrobetaine hydroxylase, complete cds. ----isReversed: 0 ----hitSequence: AUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 83 : 1 86 (fwd) 94.30 bits <<<<<____>>>>>:::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60 +U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 1 ----------------AUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 44 :::::::::::::::::::::::::::::::::::::::::: 61 CGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 45 CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 86 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #3822,sp|AB071055.1|AB071055 Macaca fascicularis testis cDNA clone:QtsA-14588, full insert sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCAGCAGCACACAGACCAAAACAGGAGUGACACUGAGAAGAUUAGCGUGGCCCUGCACAAGGAUGACACACAAAUUCAUGAAGCGUUCCAUAUUUUG hit 84 : 1367 1472 (fwd) 66.71 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACA + +C AAAA GGA GA AC GAGAAGAUUAGC UGG 1367 GUGCUcgcUUCAgcAGCACACAGACCAAAACAGGAGUGACACUGAGAAGAUUAGCGUGG- 1425 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACAC CA+A+UC GAA+ GUUCCA AUUUU 1426 CCCUGCACAAGGAUGACACACAAAUUCAUGAAGCGUUCCAUAUUUUG 1472 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #5706,sp|AB100082.1|AB100082 Pan troglodytes DNA, major histocompatibility complex class I region, section 1/6. ----isReversed: 1 ----hitSequence: GUACUCGCUUUGGCAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGCCCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA hit 85 : 124607 124501 (rev) 91.49 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+ UAAAAU GGAA GAUACAGAGAAGAU AGCA GGC 175444 GUACUcgcUUUGgcAGCACAUAUAUUAAAAUAGGAAUGAUACAGAGAAGAUCAGCACGGC 175503 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCU C CAAGG UGACA+GCA+A+UC GAA+ +UUCCA AUUUU 175504 CCCUUCACAAGGGUGACAUGCAAAUUCAUGAAGCAUUCCAUAUUUUA 175550 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7027,sp|AC087806.3|AC087806 Papio cynocephalus anubis clone RP41-187H19, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUA hit 86 : 115795 115692 (rev) 116.48 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 50716 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 50775 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA U U 50776 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCA---UAUA 50819 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7118,sp|AC092859.26|AC092859 Pan troglodytes clone rp43-111m15, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGGUAGCACAUGUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGUCCCCGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 87 : 93894 94000 (fwd) 120.65 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCA GG 93894 GUGCUugcUUUGguAGCACAUGUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCACGGU 93953 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC GCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 93954 CCCCGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 94000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7119,sp|AC092874.2|AC092874 Sus scrofa clone RP44-326F1, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAACCAAAUUCGUUUUUUUUGUUGUU hit 88 : 42084 41986 (rev) 79.59 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGA GAUUAGCAUGGC 122321 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGA---GAUUAGCAUGGC 122377 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACA CA+A+UCG +UU +UU UU 122378 CCCUGCGCAAGGAUGACAACCAAAUUCGU-----UUUUUUUGUUGUU 122419 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7160,sp|AC098645.3|AC098645 Papio anubis clone RP41-470J23, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCUGCUUGGCAGCACAUAUGCAAAAAUAGGAAAGAUACAGAGAAGAUUAUCAUGGCCCUUAUGCAAGGAUGACACACACAUUUAUGAAGCAUUUUAUAUUUUU hit 89 : 98670 98564 (rev) 81.08 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+UGC AAAAU GGAA GAUACAGAGAAGAUUA CAUGGC 94648 GUGCUcugcUUGGcAGCACAUAUGCAAAAAUAGGAAAGAUACAGAGAAGAUUAUCAUGGC 94707 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC U GCAAGGAUGACAC CA A+U GAA+ +UU A AUUUUU 94708 CCUUAUGCAAGGAUGACACACACAUUUAUGAAGCAUUUUAUAUUUUU 94754 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7196,sp|AC118584.17|AC118584 Papio anubis clone rp41-78d16, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCCCUUUGGCGGCACAUAUGCUAAAAUUGGAAUGAUACAGAGAAAAUUAGCAUGGCGUCUGAACAAGAAUGACACACAAAUUCAUGAAGCAUUCCAUAUAUAA hit 90 : 1606 1500 (rev) 75.60 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+UGCUAAAAUUGGAA GAUACAGAGAA AUUAGCAUGGC 187999 GUGCUcccUUUGgcGGCACAUAUGCUAAAAUUGGAAUGAUACAGAGAAAAUUAGCAUGGC 188058 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CUG CAAG AUGACAC CA+A+UC GAA+ +UUCCA AU U 188059 GUCUGAACAAGAAUGACACACAAAUUCAUGAAGCAUUCCAUAUAUAA 188105 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7269,sp|AC129961.2|AC129961 Sus scrofa, clone RP44-428N16, complete sequence. ----isReversed: 0 ----hitSequence: AUGCUGUGGUUGCUUCGGUAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUCAGCAUGCCCCCCUCCCCUCCCCCUGCACAAGGAUGACAUGCAAAUUAGUGAAGUGUUCCAUAUUUUC hit 91 : 39497 39620 (fwd) 90.81 bits <<<<<........____..>>>>>:::::::::::::::::::::::::::::::::::: 1 GucCc........UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGC 50 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAGAU AGC 39497 AUGCUgugguugcUUCGguAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUCAGC 39556 :::............::::::::::::::::::::::::::::::::::::::::::::: 51 AUG............GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaU 98 AUG CCCCUGC CAAGGAUGACA+GCA+A+U G GAA+UGUUCCA AU 39557 AUGccccccuccccuCCCCCUGCACAAGGAUGACAUGCAAAUUAGUGAAGUGUUCCAUAU 39616 :::: 99 UUUU 102 UUU 39617 UUUC 39620 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7277,sp|AC136964.2|AC136964 Sus scrofa domestica clone RP44-154L9, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACCUAUAUUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUUGCGAAGCGUUCCAUAUUUUU hit 92 : 84202 84308 (fwd) 114.04 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:AC U+U+ UAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 84202 GUGCUcgcUUUGgcAGCACCUAUAUUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 84261 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+U G GAA+ GUUCCA AUUUUU 84262 CCCUGUGCAAGGAUGACACACAAAUUUGCGAAGCGUUCCAUAUUUUU 84308 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7278,sp|AC136966.2|AC136966 Bos taurus clone RP42-221D7, complete sequence. ----isReversed: 0 ----hitSequence: GCGCUCACUUCAGCAGCACAUAUACUAAAUACAGAUAUGAUACAAAGAAGAUUGGCGUGGCCCCUGUGCAAGGAUUACAUGCAAAUUUGUGAAGCUUUCCAUAUUUUU hit 93 : 109704 109811 (fwd) 68.43 bits <<<<<...____..>>>>>::::::::::::...:::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAU...UGGAACgAUACAGAGAAGAUUAGCAU 52 G::C: UUC :G::CAU+U+CUAAA G A GAUACA AGAAGAUU GC U 109704 GCGCUcacUUCAgcAGCACAUAUACUAAAU-aca-GAUAUGAUACAAAGAAGAUUGGCGU 109761 :::::::::::::::::::::::::::::::::::::::::::::::::: 53 GGCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GGCCCCUG GCAAGGAU ACA+GCA+A+U G GAA+ +UUCCA AUUUUU 109762 GGCCCCUGUGCAAGGAUUACAUGCAAAUUUGUGAAGCUUUCCAUAUUUUU 109811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7292,sp|AC140951.1|AC140951 Pan troglodytes BAC clone RP43-60K3 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GUGCAUGCUUCGGUAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUCAGCAUGGCCCCUGCACAAAGAUGACAUGCAAAUUUGUGUUGCGUUCCAUAUUUGCUU hit 94 : 62387 62495 (fwd) 99.03 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C UUCG G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAU AGCAUGGC 62387 GUGCAugcUUCGguAGCACAUAUACUAAAAUUGGAAAGAUACAGAGAAGAUCAGCAUGGC 62446 :::::::::::::::::::::::::::::::::::::::::::::..:: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUU..UU 102 CCCUGC CAA GAUGACA+GCA+A+U G G + GUUCCA AUUU UU 62447 CCCUGCACAAAGAUGACAUGCAAAUUUGUGUUGCGUUCCAUAUUUgcUU 62495 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7294,sp|AC140953.1|AC140953 Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence. ----isReversed: 1 ----hitSequence: UUUGCUUCAGCAACAUGUAUACUAAAAUUGGAAUGAUAUAGAGAAGAUAAGCAUGGCCCCUGCACAAGGAUGACACACAAAUUCAUGAAGCGUCCCAUAUUUUA hit 95 : 186532 186429 (rev) 87.92 bits <<<<<____>>>>>::::::..:::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgc..UAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 :U: CUUC G :A:AU U+ UAAAAUUGGAA GAUA AGAGAAGAU AGCAUGGCCCC 18282 UUUGCUUCAGCAACAUGUAUacUAAAAUUGGAAUGAUAUAGAGAAGAUAAGCAUGGCCCC 18341 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGC CAAGGAUGACAC CA+A+UC GAA+ GU CCA AUUUU 18342 UGCACAAGGAUGACACACAAAUUCAUGAAGCGUCCCAUAUUUUA 18385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7301,sp|AC142288.1|AC142288 Pan troglodytes chromosome 7 clone RP43-178D12, complete sequence. ----isReversed: 0 ----hitSequence: GUUGCUUUGGCAGCAUAUAAACUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCUUGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU hit 96 : 142463 142566 (fwd) 86.71 bits <<<<<____>>>>>::::::..:::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgc..UAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 G : CUU GG : CAU+U+ UAAAAUUGGAAC AUACAGAGAAGAUUA CAUGGC C 142463 GUUGCUUUGGCAGCAUAUAAacUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCU 142522 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UG GCAAGGAUGACA+GCA+A+UC GAAA +UU A AUUUUU 142523 UGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU 142566 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7303,sp|AC142290.1|AC142290 Pan troglodytes chromosome 7 clone RP43-180M6, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCAUUUUGGCAGUACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCUCUGAGCAAGGAUGACAUGCAAAUUCAUGAAGUAUUCCAUAUA hit 97 : 180346 180243 (rev) 92.25 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 53700 GUGCUcauUUUGgcAGUACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 53759 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUG GCAAGGAUGACA+GCA+A+UC GAA+U+UUCCA U U 53760 CUCUGAGCAAGGAUGACAUGCAAAUUCAUGAAGUAUUCCA---UAUA 53803 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7312,sp|AC142300.1|AC142300 Pan troglodytes chromosome 7 clone RP43-127J18, complete sequence. ----isReversed: 0 ----hitSequence: UUGCUUCAGCAGCAAGUGUACUAAAAUUAAAACAAUAUAGAGAAGAUUAGCAUGAUCCCUGCACAAGUAUGACACACAAAUUUGCGAAGCAUUCUAUUUUUUU hit 98 : 41511 41613 (fwd) 76.73 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U:C:U G :G:A: U U+CUAAAAUU AAC+AUA AGAGAAGAUUAGCAUG CCCU 41511 UUGCUUCAGcAGCAAGUGUACUAAAAUUAAAACAAUAUAGAGAAGAUUAGCAUGAUCCCU 41570 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GC CAAG AUGACAC CA+A+U G GAA+ +UUC A UUUUU 41571 GCACAAGUAUGACACACAAAUUUGCGAAGCAUUCUAUUUUUUU 41613 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7383,sp|AC144780.1|AC144780 Pan troglodytes chromosome 7 clone RP43-2J12, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUUGACAGCACAUAUACUAAAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCCAUUA hit 99 : 174380 174484 (fwd) 93.31 bits <<<<<...____..>>>>>:::::::..:::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU..AAAAUUGGAACgAUACAGAGAAGAUUAGCAUG 53 GU:C: UU G :G:ACAU+U+CU AAAAUUGGAA GAUACAGAGAAGAUUAGCAUG 174380 GUGCUugcUUUGacAGCACAUAUACUaaAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUG 174439 ::::::::::::::::::::::::::::::::::::::::::::::::: 54 GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCCCCUG GCAAGGAUGACA+GCA+A+UC GAA+ +UUCC UU 174440 GCCCCUGUGCAAGGAUGACAUGCAAAUUCAUGAAGCAUUCC----AUUA 174484 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7390,sp|AC145475.1|AC145475 Pan troglodytes chromosome 7 clone RP43-34K7, complete sequence. ----isReversed: 1 ----hitSequence: GUUGCUUUGGCAGCAUAUAAACUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCUUGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU hit 100 : 118930 118827 (rev) 86.71 bits <<<<<____>>>>>::::::..:::::::::::::::::::::::::::::::::::::: 1 GucCcUUCGgGgaCAUcUgc..UAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 G : CUU GG : CAU+U+ UAAAAUUGGAAC AUACAGAGAAGAUUA CAUGGC C 17985 GUUGCUUUGGCAGCAUAUAAacUAAAAUUGGAACCAUACAGAGAAGAUUAACAUGGCUCU 18044 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UG GCAAGGAUGACA+GCA+A+UC GAAA +UU A AUUUUU 18045 UGAGCAAGGAUGACAUGCAAAUUCAUGAAACAUUUAAUAUUUUU 18088 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #398,sp|AB010266.1|AB010266 Mus musculus Creb-rp, Tnx and Cyp21 genes for cAMP response element binding protein-related protein, tenascin-X and steroid 21- ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 101 : 33261 33155 (rev) 130.26 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 34717 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 34776 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 34777 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 34823 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #2636,sp|AB049427.1|AB049427 Mus musculus DNA, clone:201, derived from 4x chromosome of T(X;4)37H translocation. ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCAGCCCAUAUACUAAAAUUGGAACAAUACAGAGAAGCUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAGUUCAUGAAGUGUUCCAUAUUCUU hit 102 : 884 990 (fwd) 103.55 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUC :G: CAU+U+CUAAAAUUGGAAC+AUACAGAGAAG UUAGCAUGGC 884 GUGCUcacUUCAgcAGCCCAUAUACUAAAAUUGGAACAAUACAGAGAAGCUUAGCAUGGC 943 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+ +UC GAA+UGUUCCA AUU UU 944 CCCUGUGCAAGGAUGACAUGCAAGUUCAUGAAGUGUUCCAUAUUCUU 990 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4560,sp|AC006289.1|AC006289 Mus musculus chromosome 17, clone 29_N_7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 103 : 164198 164092 (rev) 130.26 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 37789 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 37848 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 37849 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 37895 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4598,sp|AC011013.17|AC011013 Mus musculus chromosome 11, clone RP23-218N2, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUACAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGAAUGACACACAAAUUCAUGAAGCGUUCCAUAUU hit 104 : 108246 108349 (fwd) 99.70 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUA AAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 108246 GUGCUugcUUCGgcAGCACAUAUACUACAAUUGGAAAGAUACAGAGAAGAUUAGCAUGGC 108305 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAG AUGACAC CA+A+UC GAA+ GUUCCA U UU 108306 CCCUGCGCAAGAAUGACACACAAAUUCAUGAAGCGUUCCA---UAUU 108349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4610,sp|AC015584.18|AC015584 Mus musculus, clone RP23-400H17, complete sequence. ----isReversed: 0 ----hitSequence: GGGCUCACCUAAGCAGCACAUAUACUUAAACCGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGAGCAAGGAUGACACAAAAAUUCAGGAAGCCUUCAACUUGUUUUU hit 105 : 61516 61624 (fwd) 80.99 bits <<<<<....____.>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc....UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: U G :G: CAU+U+CU AAA GGAACGAUACAGAGAAGAUUAGCAUGGC 61516 GGGCUcaccUAAGcAGCACAUAUACUUAAACCGGAACGAUACAGAGAAGAUUAGCAUGGC 61575 ::::::::::::::::::::::::::::::::::..::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaU..gUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC A+A+UC GAA+ + + C +UUUUU 61576 CCCUGAGCAAGGAUGACACAAAAAUUCAGGAAGCcuUCAACUUGUUUUU 61624 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4617,sp|AC018559.31|AC018559 Mus musculus chromosome 6 clone ct7-596k8 strain 129/Sv, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCAGCAGCACAUAUACUAAAAAAUUGGAACGAUACAGAGAUUAGCAUGGCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCGUUUA hit 106 : 3931 3834 (rev) 82.19 bits <<<<<...____..>>>>>:::::::..:::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcU..AAAAUUGGAACgAUACAGAGAAGAUUAGCAUG 53 GU:C: UUC :G:ACAU+U+CU AAAAUUGGAACGAUACAGA GAUUAGCAUG 107845 GUGCUcgcUUCAgcAGCACAUAUACUaaAAAAUUGGAACGAUACAGA---GAUUAGCAUG 107901 ::::::::::::::::::::::::::::::::::::::::::::::::: 54 GCCCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCCCCUGCGCAAGGAUGACA+GCA+A+UCG GAA+ G UUU 107902 GCCCCUGCGCAAGGAUGACAUGCAAAUUCGUGAAGCG--------UUUA 107942 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4654,sp|AC024950.3|AC024950 Mus musculus chromosome 6 clone RP23-208N9 strain C57BL6/J, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 107 : 41292 41398 (fwd) 130.26 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACAGAGAAGAUUAGCAUGGC 41292 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAGAGAAGAUUAGCAUGGC 41351 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 41352 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 41398 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4666,sp|AC026682.14|AC026682 Mus musculus 11 BAC RP23-201K2 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGACCCUUGCGCAAGGAUGACACGCAAAUUCCUGAAGUGUUCCAUAUUUUU hit 108 : 120870 120764 (rev) 117.32 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUG C 81786 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGAC 81845 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CC UGCGCAAGGAUGACACGCA+A+UC GAA+UGUUCCA AUUUUU 81846 CCUUGCGCAAGGAUGACACGCAAAUUCCUGAAGUGUUCCAUAUUUUU 81892 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4724,sp|AC069308.21|AC069308 Mus musculus Strain C57BL6/J Chromosome 8 RP23-21B7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUCCGUGAAGCGUUCCAUAAUUUU hit 109 : 24848 24742 (rev) 127.36 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 214974 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 215033 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+ CG GAA+ GUUCCA A UUUU 215034 CCCUGCACAAGGAUGACACGCAAAUCCGUGAAGCGUUCCAUAAUUUU 215080 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4823,sp|AC083817.19|AC083817 Mus musculus 1 BAC RP23-470G12 (Roswell Park Cancer Institute Mouse BAC) complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 110 : 47359 47253 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 157592 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 157651 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 157652 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 157698 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4845,sp|AC084162.3|AC084162 Mus musculus chromosome 5 clone RP23-11P12 strain C57BL6/J, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUUGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU hit 111 : 76481 76587 (fwd) 127.62 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UU G :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 76481 GUGCUcgcUUUGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 76540 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UC GAA+ GUUCCA AUUUUU 76541 CCCUGCACAAGGAUGACACGCAAAUUCAUGAAGCGUUCCAUAUUUUU 76587 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4849,sp|AC084272.41|AC084272 Mus musculus clone rp23-11g21 map 3 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: AUACUCGCUCCAGCAGCACAUAUACUAAAACUGGAACAAUAUAGAGAAGAUUAGCAUGGCCCCUGUGCAAAGAUCACACUCAAAUUCAUGAAGAGUUCCAUAUUUUU hit 112 : 101765 101871 (fwd) 86.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U C: U C :G A:AU+U+CUAAAA UGGAAC+AUA AGAGAAGAUUAGCAUGGC 101765 AUACUcgcUCCAgcAGCACAUAUACUAAAACUGGAACAAUAUAGAGAAGAUUAGCAUGGC 101824 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAA GAU ACAC CA+A+UC GAA+ GUUCCA AUUUUU 101825 CCCUGUGCAAAGAUCACACUCAAAUUCAUGAAGAGUUCCAUAUUUUU 101871 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4877,sp|AC087040.6|AC087040 Mus musculus 1 BAC RP23-269M3 (RPCI Mouse BAC) complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 113 : 38403 38509 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 38403 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 38462 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 38463 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 38509 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4884,sp|AC087114.7|AC087114 Mus musculus Strain C57BL6/J Chromosome 10 RP23-309M23, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG hit 114 : 65498 65604 (fwd) 128.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 65498 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 65557 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUU 65558 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG 65604 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4884,sp|AC087114.7|AC087114 Mus musculus Strain C57BL6/J Chromosome 10 RP23-309M23, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG hit 115 : 141809 141915 (fwd) 128.81 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 141809 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 141868 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUU 141869 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUG 141915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4887,sp|AC087117.9|AC087117 Mus Musculus Strain C57BL6/J chromosome 17 BAC, RP23-349B4, Complete Sequence, complete sequence. ----isReversed: 0 ----hitSequence: GAGCUCUCUUCAGUAGCACUCACACUAAAAUUGGAAAGAUACAGAGAUUAGCAUGGCCCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU hit 116 : 157835 157938 (fwd) 80.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 G :C: UUC :G: C +++CUAAAAUUGGAA GAUACAGA GAUUAGCAUGGC 157835 GAGCUcucUUCAguAGCACUCACACUAAAAUUGGAAAGAUACAGA---GAUUAGCAUGGC 157891 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCG AAGGAUG CACGCA+A+U G A++ +UUCCA AUUUUU 157892 CCCUGCGGAAGGAUGUCACGCAAAUUUGUAAGGCAUUCCAUAUUUUU 157938 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4920,sp|AC087891.12|AC087891 Mus musculus Strain C57BL6/J Chromosome 10 RP23-440N1, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 117 : 72282 72176 (rev) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 122771 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 122830 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 122831 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 122877 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4938,sp|AC090495.5|AC090495 Genomic sequence for Mus musculus, clone RP23-60B7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCGCUUCGGCAACACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAACUCGUGAAGCGUUCCAUAUUUUU hit 118 : 64287 64181 (rev) 126.90 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 18114 GUGCUcgcUUCGgcAACACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 18173 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A UCG GAA+ GUUCCA AUUUUU 18174 CCCUGCGCAAGGAUGACACGCAAACUCGUGAAGCGUUCCAUAUUUUU 18220 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4945,sp|AC090652.32|AC090652 Mus musculus chromosome 7 clone rp23-116a10 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: GUGUUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 119 : 41935 42041 (fwd) 130.13 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU::: UUCG :::ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 41935 GUGUUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 41994 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 41995 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 42041 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4947,sp|AC090654.38|AC090654 Mus musculus clone rp23-329p1 map 14 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACACAAAUUUGUGAAGCAUUCGAAA hit 120 : 99838 99939 (fwd) 101.00 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99838 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 99897 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACAC CA+A+U G GAA+ +UUC AAA 99898 CCCUGCGCAAGGAUGACACACAAAUUUGUGAAGCAUUCGAAA----- 99939 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4969,sp|AC091452.1|AC091452 Mus musculus chromosome X clone RP21-124C16, complete sequence. ----isReversed: 0 ----hitSequence: AUGCUUGCUUCAGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGAAUAACAUGCAAACUCGUGAAGCAUUCCAUACUUUC hit 121 : 133599 133705 (fwd) 105.11 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUC :G:A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 133599 AUGCUugcUUCAgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 133658 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAG AU ACA+GCA+A UCG GAA+ +UUCCA A UUU 133659 CCCUGCACAAGAAUAACAUGCAAACUCGUGAAGCAUUCCAUACUUUC 133705 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4977,sp|AC091521.19|AC091521 Mus musculus chromosome 1 clone rp23-145f9, complete sequence. ----isReversed: 1 ----hitSequence: AUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACAUGCAAAUUCGUGAAGCAUUCCAUAUUUCU hit 122 : 118741 118635 (rev) 117.22 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 80044 AUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 80103 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACA+GCA+A+UCG GAA+ +UUCCA AUUU U 80104 CCCUGUGCAAGGAUGACAUGCAAAUUCGUGAAGCAUUCCAUAUUUCU 80150 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5052,sp|AC097354.11|AC097354 Mus musculus clone ct7-297f7 strain 129/Sv, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 123 : 112355 112461 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 112355 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 112414 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 112415 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 112461 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5052,sp|AC097354.11|AC097354 Mus musculus clone ct7-297f7 strain 129/Sv, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCACUUCAGCAGCACAUAUACUAAAAUUAGAAUGAUACAGAGAUUAGCAUGACCCCAGAACAAGGAUGCUAUGCAGAUUCAUAAAGCGUUCCAUAAUUUU hit 124 : 157134 157237 (fwd) 66.58 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUC :G:ACAU+U+CUAAAAUU GAA GAUACAGA GAUUAGCAUG C 157134 GUGCUcacUUCAgcAGCACAUAUACUAAAAUUAGAAUGAUACAGA---GAUUAGCAUGAC 157190 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCC G CAAGGAUG A+GCA A+UC AA+ GUUCCA A UUUU 157191 CCCAGAACAAGGAUGCUAUGCAGAUUCAUAAAGCGUUCCAUAAUUUU 157237 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5055,sp|AC098567.4|AC098567 Genomic sequence for Mus musculus, clone RP23-198E6, from chromosome 17, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCUCUUCAGCAACACAUAUACUAAAAUUGGAAAGAUACAGAGAAUAUUAGCAUGGCCUCUGUGCAAGGAUGAAAUGCAAAUUCGUGAAGCUUUCCAUAUUUUU hit 125 : 164318 164212 (rev) 102.24 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUC : :ACAU+U+CUAAAAUUGGAA GAUACAGAGAA AUUAGCAUGGC 20960 GUGCUcucUUCAgcAACACAUAUACUAAAAUUGGAAAGAUACAGAGAAUAUUAGCAUGGC 21019 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 C CUG GCAAGGAUGA A+GCA+A+UCG GAA+ +UUCCA AUUUUU 21020 CUCUGUGCAAGGAUGAAAUGCAAAUUCGUGAAGCUUUCCAUAUUUUU 21066 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5104,sp|AC098875.3|AC098875 Mus musculus clone RP23-1E10, complete sequence. ----isReversed: 0 ----hitSequence: AUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAUAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 126 : 198138 198244 (fwd) 125.05 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 :U:C: UUCG :G:A:AU+U+CUAAAAUUGGAACGAUACA AGAAGAUUAGCAUGGC 198138 AUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAUAGAAGAUUAGCAUGGC 198197 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 198198 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 198244 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5152,sp|AC100746.4|AC100746 Mus musculus, clone RP24-399G21, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU hit 127 : 65133 65027 (rev) 128.40 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 U:C: UUCG :G:A AU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 92550 GUGCUugcUUCGgcAGCAUAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 92609 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGC CAAGGAUGACACGCA+A+UCG GAA+UGUUCCA AUUUUU 92610 CCCUGCACAAGGAUGACACGCAAAUUCGUGAAGUGUUCCAUAUUUUU 92656 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5184,sp|AC101931.8|AC101931 Mus musculus, clone RP24-63O23, complete sequence. ----isReversed: 0 ----hitSequence: GGCCAAUAUGAUGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGUAUGGCCCUUGCGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU hit 128 : 77587 77690 (fwd) 110.19 bits <<<<<.____.>>>>>:::::::::::::::::::::::::::::::::::::::::::: 1 GucCc.UUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCC 58 G C: U G :G CAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAG AUGGCCC 77587 GGCCAaUAUGaUGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGUAUGGCCCU 77646 :::::::::::::::::::::::::::::::::::::::::::: 59 UGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 UGCGCAAGGAUGACACGCA+A+U G GAA+UGUUCCA AUUUUU 77647 UGCGCAAGGAUGACACGCAAAUUUGUGAAGUGUUCCAUAUUUUU 77690 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5213,sp|AC102527.6|AC102527 Mus musculus, clone RP23-29G4, complete sequence. ----isReversed: 0 ----hitSequence: UUGCUUCUGCAGCACAUAUACUAAAAUUGGAAGGAUACAGAGUAGAUUAGCAUGGCCCCUGCGCAAAGGAUGCAAAUUCGUGAAGUGUUCCAUAAAAAU hit 129 : 174936 175034 (fwd) 72.25 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U:C:U G :G:A:AU+U+CUAAAAUUGGAA GAUACAGAG AGAUUAGCAUGGCCCCU 174936 UUGCUUCUGcAGCACAUAUACUAAAAUUGGAAGGAUACAGAGUAGAUUAGCAUGGCCCCU 174995 ::::::.::::::::::::::::::::::::::::::::::::: 60 GCGCAA.GGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GCGCAA GGAUG CA+A+UCG GAA+UGUUCCA A U 174996 GCGCAAaGGAUG-----CAAAUUCGUGAAGUGUUCCAUAAAAAU 175034 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5245,sp|AC104099.5|AC104099 Mus musculus clone RP24-372J8, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUCGGCAGCACAUAUACUAAAAUUGGAAUGAUACAAAGAAGAUGAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUU hit 130 : 97806 97703 (rev) 95.68 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAA GAUACA AGAAGAU AGCAUGGC 50454 GUGCUugcUUCGgcAGCACAUAUACUAAAAUUGGAAUGAUACAAAGAAGAUGAGCAUGGC 50513 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA U UU 50514 CCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCA---UAUU 50557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5256,sp|AC104327.5|AC104327 Mus musculus chromosome 3 clone rp23-295a4 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAACACAUAUACUAAAAUUGGAACAAUACAGAAAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 131 : 207763 207869 (fwd) 122.93 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU: : UUCG : :ACAU+U+CUAAAAUUGGAAC+AUACAGA AAGAUUAGCAUGGC 207763 GUGCUcgcUUCGgcAACACAUAUACUAAAAUUGGAACAAUACAGAAAAGAUUAGCAUGGC 207822 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 207823 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 207869 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5260,sp|AC104518.5|AC104518 Mus Musculus Strain 129S6/SvEvTac chromosome 17 BAC, RP22-187D17, Complete Sequence, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU hit 132 : 153579 153473 (rev) 124.79 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 9789 GUGCUcacUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 9848 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUG GCAAGGAUGACAC CA+A+UCG GAA+ GUUCCA AUUUUU 9849 CCCUGUGCAAGGAUGACACACAAAUUCGUGAAGCGUUCCAUAUUUUU 9895 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5263,sp|AC104832.8|AC104832 Mus Musculus Strain C57BL6/J Chromosome 12 BAC, RP23-38P6, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 133 : 48102 48208 (fwd) 133.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 48102 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 48161 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 48162 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 48208 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5290,sp|AC105950.11|AC105950 Mus musculus, clone RP24-386J17, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU hit 134 : 116604 116710 (fwd) 133.66 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 116604 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 116663 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ +UUCCA AUUUUU 116664 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCAUUCCAUAUUUUU 116710 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5315,sp|AC108435.5|AC108435 Mus musculus, clone RP23-229O20, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUCACUUCAGCAGCACAUAUACCAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAAAAUUGGAAAUAUAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGAUACACAAAUUUGUGAAGUGUUUCAUUUUUUU hit 135 : 181163 181027 (rev) 75.86 bits <<<<<...____..>>>>>::::::..................................: 1 GucCc...UUCG..gGgaCAUcUgc..................................U 21 GU:C: UUC :G:ACAU+U+C 22119 GUGCUcacUUCAgcAGCACAUAUACcaaaaaaaaaaaaaaaaaaaagaaagaaaaagaaA 22178 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 22 AAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGcauAaU 81 AAAAUUGGAA AUA GAAGAUUAGCAUGGCCCCUGC CAAGGAUGA AC CA+A+U 22179 AAAAUUGGAAAUAUA----GAAGAUUAGCAUGGCCCCUGCACAAGGAUGAUACACAAAUU 22234 ::::::::::::::::::::: 82 CGAGAaaUgUUCCaaaUUUUU 102 G GAA+UGUU CA UUUUU 22235 UGUGAAGUGUUUCAUUUUUUU 22255 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5339,sp|AC109280.9|AC109280 Mus musculus, clone RP23-400B7, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 136 : 165770 165876 (fwd) 134.37 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 165770 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC 165829 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 165830 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 165876 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5355,sp|AC110090.6|AC110090 Mus musculus chromosome 1 clone RP23-27L4, complete sequence. ----isReversed: 0 ----hitSequence: GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU hit 137 : 93142 93248 (fwd) 134.03 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU:C: UUCG :G:ACAU+U+CUAAAAUUGGAAC+AUACAGAGAAGAUUAGCAUGGC 93142 GUGCUcgcUUCGgcAGCACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGC 93201 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUGACACGCA+A+UCG GAA+ GUUCCA AUUUUU 93202 CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU 93248 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5452,sp|AC113301.7|AC113301 Mus musculus, clone RP23-430G7, complete sequence. ----isReversed: 1 ----hitSequence: GUGCUUGCUUUGGUAGUACAUAUACUAAAAUCGGAACACAGAGAAUAUUAGCAUGGCCCCUGCGCAAGGAUGGCAUGCAAAUUAGUGAAGUGUUCCAUAUUUUC hit 138 : 54850 54747 (rev) 93.80 bits <<<<<...____..>>>>>::::::::::::::::::::::::::::::::::::::::: 1 GucCc...UUCG..gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGC 55 GU C: UU G :G ACAU+U+CUAAAAU GGAAC ACAGAGAA AUUAGCAUGGC 141136 GUGCUugcUUUGguAGUACAUAUACUAAAAUCGGAAC---ACAGAGAAUAUUAGCAUGGC 141192 ::::::::::::::::::::::::::::::::::::::::::::::: 56 CCCUGCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 CCCUGCGCAAGGAUG CA+GCA+A+U G GAA+UGUUCCA AUUUU 141193 CCCUGCGCAAGGAUGGCAUGCAAAUUAGUGAAGUGUUCCAUAUUUUC 141239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5537,sp|AC116319.4|AC116319 Mus musculus chromosome 14 clone RP23-265J2, complete sequence. ----isReversed: 1 ----hitSequence: UUGCUUUGGCUGCACAUAUACUAAAAUUAGAACGAUAUAAAGAAUAUUAUCAUGGCCCCUGCAUAAGAAUGACAUGCAAAUUAGUGAAGUGUUCUGUUA hit 139 : 123156 123058 (rev) 66.38 bits <<<<<____.>>>>>::::::::::::::::::::::::::::::::::::::::::::: 1 GucCcUUCG.gGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCU 59 :U:C UU G G:A:AU+U+CUAAAAUU GAACGAUA A AGAA AUUA CAUGGCCCCU 47339 UUGCUUUGGcUGCACAUAUACUAAAAUUAGAACGAUAUAAAGAAUAUUAUCAUGGCCCCU 47398 ::::::::::::::::::::::::::::::::::::::::::: 60 GCGCAAGGAUGACACGcauAaUCGAGAaaUgUUCCaaaUUUUU 102 GC AAG AUGACA+GCA+A+U G GAA+UGUUC UU 47399 GCAUAAGAAUGACAUGCAAAUUAGUGAAGUGUUCU----GUUA 47437 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5581,sp|AC116657.3|AC116657 Mus musculus clone RP23-