Params: ./cmzasha --no-stderr --filter 200 40 Rfam/cm/RF00025.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_orig/RF00025_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: tricycle.cs.washington.edu pid: 19250 ----cmFile: Rfam/cm/RF00025.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #43322,sp|AF399707.1|AF399707 Tetrahymena thermophila telomerase RNA, complete sequence. ----isReversed: 0 ----hitSequence: AUACCCGCUUAAUUCAUUCAGAUCUGUAAUAGAACUGUCAUUCAACCCCAAAAAUCUAGUGCUGAUAUAACCUUCACCAAUUAGGUUCAAAUAAGUGGUAAUGCGGGACAAAAGACUAUCGACAUUUGAUACACUAUUUAUCAAUGGAUGUCUUAUUUUU hit 0 : 2183 2342 (fwd) 127.42 bits (((-(((((((.,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgc.aAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCU 59 AU+CCCGC AAUUCAUUCAGAUCUG+AAUAGAACUGUCAUUCAACCCCAAAAAUCU 2183 ---AUACCCGCuUAAUUCAUUCAGAUCUGUAAUAGAACUGUCAUUCAACCCCAAAAAUCU 2239 ,,,,,,,,,,,,,,,,,,<<<<<<<<________>>>>>>>>,,,)))))))-))).<<< 60 AGuaCAAAUAuuGccUUcgccuguuuGGuaguAAaaacaggaAaugcgggcaaacu.aag 118 AGU+C++AUAU CCUUC:CC::UU:GGU ++AA:AA::GG:AAUGCGGG AC+ AAG 2240 AGUGCUGAUAUAACCUUCACCAAUUAGGUUCAAAUAAGUGGUAAUGCGGG---ACAaAAG 2296 <<-<<<--<<<-<<<<<________>>>>>>>>->>>>>>>>:::::: 119 aguaucGAcauUugauaAcAcUAUUuaucaaugggaucucuuauUUUU 166 A:UAUCGACAUUUGAUA CACUAUUUAUCAAUG GAU:UCUUAUUUUU 2297 ACUAUCGACAUUUGAUA-CACUAUUUAUCAAUG-GAUGUCUUAUUUUU 2342 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #44349,sp|AF417609.1|AF417609 Colpidium campylum telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUCCCCGCAAAUUCAUUCUGUUUGCAUUCAAACAGUCAUUCAACCCCAAAAAUCUAGACCAAAUAUUGUCUUCCCUUCUUGGCACAAACAAAGAAGAGACGCGGGAUAAAGAUACUCCGACGAUUGAUACAAUAUUUAUCAACGGGAGGUCUUACUUUU hit 1 : 194 352 (fwd) 102.30 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 AU+CCCGCAAAUUCAUUC+G+U: G A U+:AAC+GUCAUUCAACCCCAAAAAUCUA 194 ---AUCCCCGCAAAUUCAUUCUGUUU-GCAUUCAAACAGUCAUUCAACCCCAAAAAUCUA 249 ,,,,,,,,,,,,,,,,,<<<<<<<<____..____>>>>>>>>,,,)))))))-)))<<< 61 GuaCAAAUAuuGccUUcgccuguuuGGua..guAAaaacaggaAaugcgggcaaacuaag 118 G+ CAAAUAUUG CUUC +CU::UUGG+A + AAA::AG+ A+GCGGG A++AAG 250 GACCAAAUAUUGUCUUC-CCUUCUUGGCAcaAACAAAGAAGA-GACGCGGG---AUAAAG 304 <<-<<<.--<<<-<<<<<________>>>>>>>>->>>>>>>>:::::: 119 aguauc.GAcauUugauaAcAcUAUUuaucaaugggaucucuuauUUUU 166 A:+:UC GAC:+UUGAUA CA+UAUUUAUCA+:GGGA::UCUUA+UUUU 305 AUACUCcGACGAUUGAUA-CAAUAUUUAUCAACGGGAGGUCUUACUUUU 352 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #44350,sp|AF417610.1|AF417610 Colpidium colpoda telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUCCCCGCAACUCCAUUCAGUUCGAAAUUGAACUGUCAUUCAACCCCAAAAAUCUAGUAAAAAAUAUUGCCGAAACUUUCAGGCAUUAAGGAAAGUAAAGCGGGAUCAGAUACUCCGACUUGUGAUACACUAUUUAUCACAUGGGAGAUCUAUUUUU hit 2 : 220 376 (fwd) 102.12 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 AU+CCCGCAA U+CAUUCAG+UC GAAAU+GAACUGUCAUUCAACCCCAAAAAUCUA 220 ---AUCCCCGCAACUCCAUUCAGUUC-GAAAUUGAACUGUCAUUCAACCCCAAAAAUCUA 275 ,,,,,.,,,,,,,,,,,,<<<<<<<<________>>>>>>>>,,,)))))))-)))<<<< 61 GuaCA.AAUAuuGccUUcgccuguuuGGuaguAAaaacaggaAaugcgggcaaacuaaga 119 GUA+A AAUAUUGCC ++:CU:U:+GG+A UAA+:A:AG:+AA GCGGG A++ AGA 276 GUAAAaAAUAUUGCC-GAAACUUUCAGGCAUUAAGGAAAGUAAA-GCGGG---AUC-AGA 329 <-<<<.--<<<-<<<<<________>>>>>.>>>->>>>>>>>:::::: 120 guauc.GAcauUugauaAcAcUAUUuauca.augggaucucuuauUUUU 166 :+:UC GAC+U UGAUA CACUAUUUAUCA A+GGGA::UCU AUUUUU 330 UACUCcGACUUGUGAUA-CACUAUUUAUCAcAUGGGAGAUCU-AUUUUU 376 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #44351,sp|AF417611.1|AF417611 Colpidium striatum telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUCCCCGCAAAUUCAUUCUGUUUGCAUUCAAACAGUCAUUCAACCCCAAAAAUCUAGACCAAAUAUUGUCUUCCCUUCUUGGCACAAACAAAGAAGAGACGCGGGAUAAAGAUACUCCGACGAUUGAUACAAUAUUUAUCAACGGGAGGUCUUACUUUU hit 3 : 283 441 (fwd) 102.30 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 AU+CCCGCAAAUUCAUUC+G+U: G A U+:AAC+GUCAUUCAACCCCAAAAAUCUA 283 ---AUCCCCGCAAAUUCAUUCUGUUU-GCAUUCAAACAGUCAUUCAACCCCAAAAAUCUA 338 ,,,,,,,,,,,,,,,,,<<<<<<<<____..____>>>>>>>>,,,)))))))-)))<<< 61 GuaCAAAUAuuGccUUcgccuguuuGGua..guAAaaacaggaAaugcgggcaaacuaag 118 G+ CAAAUAUUG CUUC +CU::UUGG+A + AAA::AG+ A+GCGGG A++AAG 339 GACCAAAUAUUGUCUUC-CCUUCUUGGCAcaAACAAAGAAGA-GACGCGGG---AUAAAG 393 <<-<<<.--<<<-<<<<<________>>>>>>>>->>>>>>>>:::::: 119 aguauc.GAcauUugauaAcAcUAUUuaucaaugggaucucuuauUUUU 166 A:+:UC GAC:+UUGAUA CA+UAUUUAUCA+:GGGA::UCUUA+UUUU 394 AUACUCcGACGAUUGAUA-CAAUAUUUAUCAACGGGAGGUCUUACUUUU 441 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #44352,sp|AF417612.1|AF417612 Glaucoma sp. ME60q telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: UACCUCCUGUGGAUCCAUUCAGGAUUAAUGAAAUCCUGUCAUUCAACCCCAAAAAUCUUGUCAAAUUAUUGCCUCGUCUUUUGGGCACAAACAAAAGUCACGCAGGAGGUUCAGACAUUCGACAUAAGAUACACUAUUUAUCUUAUGGAAGGUCUAGUUUUU hit 4 : 231 392 (fwd) 92.43 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 :: ::CC:G: AU+CAUUCAG+::U+A+ A::+CUGUCAUUCAACCCCAAAAAUCU 231 UAC-CUCCUGUGGAUCCAUUCAGGAUUAAUGAAAUCCUGUCAUUCAACCCCAAAAAUCUU 289 ,,,,,,,,,,,,,,,,,<<<<<<<<________>>>>>>>>,,,)))))))-)))<<<<< 61 GuaCAAAUAuuGccUUcgccuguuuGGuaguAAaaacaggaAaugcgggcaaacuaagag 120 GU +AA UAUUGCC UC::CU:UU:GG+A++AA:AA:AG::A :C:GG:: :: :AGA: 290 GUCAAAUUAUUGCC-UCGUCUUUUGGGCACAAACAAAAGUCAC-GCAGGAG-GUUCAGAC 346 -<<<--<<<-<<<<<________>>>>>.>>>->>>.>>>>>:::::: 121 uaucGAcauUugauaAcAcUAUUuauca.augggau.cucuuauUUUU 166 +:UCGACAU :GAUA CACUAUUUAUC: AUG GA: :UCU: UUUUU 347 AUUCGACAUAAGAUA-CACUAUUUAUCUuAUG-GAAgGUCUAGUUUUU 392 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6767,sp|U10565.1|EA10565 Euplotes aediculatus telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AGUUUCUCGAUAAUUGAUCUGUAGAAUCUGUCAAGCAAAACCCCAAAACCUUACACUGAGAGCAUUUAGCCUGAUUACUCUUUAAAUCAAAUCAGGCAAUAGAGAGAAACUCGAGAGGUGAAAACCCCACAGCAUUCUGAAAUGUAUUUGGGAGUAAUCUCAUAUUAGUUUGCUGUCCUCUCAUCUUUU hit 5 : 50 238 (fwd) 49.90 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,..,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUC..AACCCCAAAAAUC 58 AGU U:C:C+: AAUU A UC+G U+ AAU C+GUCA C AACCCCAAAA++ 50 AGU-UUCUCGAUAAUUGA-UCUG---UAGAAU----CUGUCAAGCaaAACCCCAAAACCU 100 ,,,,,,,,,,,,,,,,,,,<<<<<<<<____.....____>>>>>>>>,,,.)))))))- 59 UAGuaCAAAUAuuGccUUcgccuguuuGGua.....guAAaaacaggaAau.gcgggcaa 112 UA AC++A+A++ ++UU+:CCUG:UU +U+ U AAA:CAGG:AAU :+G:G:A 101 UA-CACUGAGAGC-AUUUAGCCUGAUUACUCuuuaaAUCAAAUCAGGCAAUaGAGAGAA- 157 )))..<<<<<-.........<<<--<<<-<<<<<________................>> 113 acu..aagagu.........aucGAcauUugauaAcAcUAUU................ua 145 ACU A:::GU A:: +::U+++:AA+++UAUU U: 158 ACUcgAGAGGUgaaaaccccACA--GCAUUCUGAAAUGUAUUugggaguaaucucauaUU 215 >>>>>>->>>>>>>>..:::::: 146 ucaaugggaucucuu..auUUUU 166 +++::++::UC:::U ++UUUU 216 AGUUUGCUGUCCUCUcaUCUUUU 238 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #7086,sp|U10566.1|EE10566 Euplotes eurystomus telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AGUUUCUCGAUAAUUGAUCUGUAGAAUCUGUCAAGCAAAACCCCAAAACCUUACACUGAGAGCAUUUAGCUUGAUUACUCUUUAAAUUAAAUCAGGCAAUAGAGAGAAACUCGAGAGGUGAAAACCCCACAGCAUUCUGAAAUGUAUUUGGGAGUAAUCUCAUAUUGGUUUGCUGUCCUCUCAUCUUUU hit 6 : 72 260 (fwd) 46.65 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,..,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUC..AACCCCAAAAAUC 58 AGU U:C:C+: AAUU A UC+G U+ AAU C+GUCA C AACCCCAAAA++ 72 AGU-UUCUCGAUAAUUGA-UCUG---UAGAAU----CUGUCAAGCaaAACCCCAAAACCU 122 ,,,,,,,,,,,,,,,,,,,<<<<<<<<____.....____>>>>>>>>,,,.)))))))- 59 UAGuaCAAAUAuuGccUUcgccuguuuGGua.....guAAaaacaggaAau.gcgggcaa 112 UA AC++A+A++ ++UU+:C:UG:UU +U+ U AAA:CA:G:AAU :+G:G:A 123 UA-CACUGAGAGC-AUUUAGCUUGAUUACUCuuuaaAUUAAAUCAGGCAAUaGAGAGAA- 179 )))..<<<<<-.........<<<--<<<-<<<<<________................>> 113 acu..aagagu.........aucGAcauUugauaAcAcUAUU................ua 145 ACU A:::GU A:: +::U+++:AA+++UAUU U: 180 ACUcgAGAGGUgaaaaccccACA--GCAUUCUGAAAUGUAUUugggaguaaucucauaUU 237 >>>>>>->>>>>>>>..:::::: 146 ucaaugggaucucuu..auUUUU 166 +++::++::UC:::U ++UUUU 238 GGUUUGCUGUCCUCUcaUCUUUU 260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #13797,sp|U10567.1|ON10567 Oxytricha nova H10 telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUGGAAGUGCGUCAGUCAUAGCACUGUCAACAAAACCCCAAAACCGUAAACUCAGAGCAAUUCGCCUGGUUCCUCUUUAAAGCAAAACCAGGAGGUUCCGCCAGCUACCAGAGGACGAAGUGGGCUAAGUGAAAUGAAAAUUUGAGAGUUUCUCUCCAUCACUUAGCCCCGCCUCUCAUUCUUUU hit 7 : 1 190 (fwd) 44.75 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,.,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUC.AUUCAACCCCAAAAAUCU 59 AG: UG:::G: A U C UCAG : A+A :+ CUGUC A AACCCCAAAA++ U 1 AGC-UGGUGGA-AGUGCG-UCAG---UCAUAGCA--CUGUCaACAAAACCCCAAAACCGU 52 ,,,,,,,,,,,,,,,,,,<<<<<<<<____......____>>>>>>>>,,,)))))))-) 60 AGuaCAAAUAuuGccUUcgccuguuuGGua......guAAaaacaggaAaugcgggcaaa 113 A +AC+ A+A++ + UUCGCCUG:UU +U+ G AAAA:CAGGA +U:C:::CA : 53 A-AACUCAGAGC-AAUUCGCCUGGUUCCUCuuuaaaGCAAAACCAGGAGGUUCCGCCA-G 109 ))...<<<<<-......<<<--<<<-<<<<<_____.___.................>>> 114 cu...aagagu......aucGAcauUugauaAcAcU.AUU.................uau 146 CU A:::G+ ::: C:: :G+:AA+++ A U U:+ 110 CUaccAGAGGAcgaaguGGG--CUA-AGUGAAAUGAaAAUuugagaguuucucuccaUCA 166 >>>>>->>>.>>>>>...:::::: 147 caaugggau.cucuu...auUUUU 166 C:::G+::: C:::U ++UUUU 167 CUUAGCCCCgCCUCUcauUCUUUU 190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #14042,sp|U10568.1|OT10568 Oxytricha trifallax telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AGUCGGCGGAAAUCAGUCAGUCAUAGCGCUGUCAACAAAACCCCAAAACCGUAAAAUUAGAGCAAUUCGCCUGGUUCCUCUUUAAAGCAAAACCAGGAGGCUCCGCCGACUCAGAGGGCACUGUGGGCUGAGCAAAAUGAAAAUUUGAGAGUUUCUCUCCAUUGCUUAGCCCUACCUCUAUCUUUU hit 8 : 27 212 (fwd) 51.08 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,.,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUC.AUUCAACCCCAAAAAUCU 59 AGU :G:C:G: AAU+ UCAG : A+A :G CUGUC A AACCCCAAAA++ U 27 AGU-CGGCGGA-AAUCAG-UCAG---UCAUAGCG--CUGUCaACAAAACCCCAAAACCGU 78 ,,,,,,,,,,,,,,,,,,<<<<<<<<____......____>>>>>>>>,,,)))))))-) 60 AGuaCAAAUAuuGccUUcgccuguuuGGua......guAAaaacaggaAaugcgggcaaa 113 A +A++ A+A++ + UUCGCCUG:UU +U+ G AAAA:CAGGA ++:C:G:C: A 79 A-AAAUUAGAGC-AAUUCGCCUGGUUCCUCuuuaaaGCAAAACCAGGAGGCUCCGCCG-A 135 )).<<<<<-......<<<--<<<-<<<<<_____.___.................>>>>> 114 cu.aagagu......aucGAcauUugauaAcAcU.AUU.................uauca 148 CU A:::G ::: C:: :G::AA+++ A U U::C: 136 CUcAGAGGGcacuguGGG--CUG-AGCAAAAUGAaAAUuugagaguuucucuccaUUGCU 192 >>>->>>..>>>>>.:::::: 149 augggau..cucuu.auUUUU 166 ::G ::: C:::U ++UUUU 193 UAG-CCCuaCCUCUaUCUUUU 212 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20611,sp|U10569.1|SL10569 Stylonychia lemnae telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AGUUCGGCGGAAAUCCGUCAGCUAUAACGCUGUCAAGAAAACCCCAAAACCGUAAAAUGAGAGCAAUUCGCCUGGUUCCUCUUUAAAGUCAAACCAGGAGGCUCCGCCGGACUAGAGGUCGAAAAGGACUGAGUAAAAUACUGCAUUUGAGAGUUUCUCUCCAUUGCAAAGUCCUCCCUCUCUUCUUUU hit 9 : 28 216 (fwd) 52.59 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,.,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUC.AUUCAACCCCAAAAAUCU 59 AGU :G:C:G: AAU+C UCAG : A+A :G CUGUC A AACCCCAAAA++ U 28 AGUUCGGCGGA-AAUCCG-UCAG---CUAUAACG--CUGUCaAGAAAACCCCAAAACCGU 80 ,,,,,,,,,,,,,,,,,,<<<<<<<<____......____>>>>>>>>,,,)))))))-) 60 AGuaCAAAUAuuGccUUcgccuguuuGGua......guAAaaacaggaAaugcgggcaaa 113 A +A+++A+A++ + UUCGCCUG:UU +U+ GU AAA:CAGGA ++:C:G:C:+A 81 A-AAAUGAGAGC-AAUUCGCCUGGUUCCUCuuuaaaGUCAAACCAGGAGGCUCCGCCGGA 138 ))<<<<<-....<<<--<<<-<<<<<_____...___................>>>>>>> 114 cuaagagu....aucGAcauUugauaAcAcU...AUU................uaucaau 150 CUA:::GU A :GAC:: +G+:AA+++ AUU U:+C+:: 139 CUAGAGGUcgaaAAGGACUG-AGUAAAAUACugcAUUugagaguuucucuccaUUGCAAA 197 >->>>.>>>>>..:::::: 151 gggau.cucuu..auUUUU 166 G : U C:::U ++UUUU 198 GUCCUcCCUCUcuUCUUUU 216 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20742,sp|U10570.1|SM10570 Stylonychia mytilis telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AGUUCGGCGGAAAUCCGUCAGCUAUAACGCUGUCAAGAAAACCCCAAAACCGUAAAUUGAGAGCAAUUCGCCUGGUUCCUCUUUAAAGUUAAACCAGGAAGCUCCGCCGAACUAGAGGUCGAUAAGGGCUGAGUAAAAUACUGCAUUUGAGAGCUUCUCUCCAUUGCAAAGUCCUCCCUCUCUUCUUUU hit 10 : 71 259 (fwd) 49.41 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,.,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUC.AUUCAACCCCAAAAAUCU 59 AGU :G:C:G: AAU+C UCAG : A+A :G CUGUC A AACCCCAAAA++ U 71 AGUUCGGCGGA-AAUCCG-UCAG---CUAUAACG--CUGUCaAGAAAACCCCAAAACCGU 123 ,,,,,,,,,,,,,,,,,,<<<<<<<<____......____>>>>>>>>,,,)))))))-) 60 AGuaCAAAUAuuGccUUcgccuguuuGGua......guAAaaacaggaAaugcgggcaaa 113 A +A ++A+A++ + UUCGCCUG:UU +U+ GU AAA:CAGGAA++:C:G:C:AA 124 A-AAUUGAGAGC-AAUUCGCCUGGUUCCUCuuuaaaGUUAAACCAGGAAGCUCCGCCGAA 181 ))<<<<<-......<<<--<<<-<<<<<_____...___................>>>>> 114 cuaagagu......aucGAcauUugauaAcAcU...AUU................uauca 148 CUA:::GU :: C:: +G+:AA+++ AUU U:+C+ 182 CUAGAGGUcgauaaGGG--CUG-AGUAAAAUACugcAUUugagagcuucucuccaUUGCA 238 >>>->>>..>>>>>..:::::: 149 augggau..cucuu..auUUUU 166 ::G :: C:::U ++UUUU 239 AAG-UCCucCCUCUcuUCUUUU 259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21754,sp|U22349.1|TA22349 Tetrahymena australis telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUACCCGCAUAUCAUUCAGACCCUUUAUGGAACUGUCAUUCAACCCCAAAAAUCUAGUGCAAAUAUUGUCUUAAUUACUUAGGCUAAAAGAAAUAAGUAUUAAAGCGGGACAAGGCAUCGACAUUUGAUACAAAUAUUGAUCAAUGGAUGUCUUAUUUUU hit 11 : 201 360 (fwd) 103.54 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 AU+CCCGC A UCAUUCAGA:C+ ++AU+G:ACUGUCAUUCAACCCCAAAAAUCUA 201 ---AUACCCGC-AUAUCAUUCAGACCCUUUAUGGAACUGUCAUUCAACCCCAAAAAUCUA 256 ,,,,,,,,,,,,,,,,,<<<<<<<<____....____>>>>>>>>,,,)))))))-)))< 61 GuaCAAAUAuuGccUUcgccuguuuGGua....guAAaaacaggaAaugcgggcaaacua 116 GU+CAAAUAUUG CUU+:::::UU:GG+ G+AA:AA:::::AA GCGGG AC A 257 GUGCAAAUAUUGUCUUAAUUACUUAGGCUaaaaGAAAUAAGUAUUAAAGCGGG---AC-A 312 <<<<-<<<--<<<-<<<<<________>>>>>>>>->>>>>>>>:::::: 117 agaguaucGAcauUugauaAcAcUAUUuaucaaugggaucucuuauUUUU 166 AG:: AUCGACAUUUGAU: +A+UAUU:AUCAAUG GAU::CUUAUUUUU 313 AGGC-AUCGACAUUUGAUACAAAUAUUGAUCAAUG-GAUGUCUUAUUUUU 360 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #21924,sp|U22350.1|TB22350 Tetrahymena borealis telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUACCCGCAAAUUCAUUCAGGUCUGUAAUAGAUCUGUCAUUCAACCCCAAAAAUCUAGUGCAAAUAUUACCUUCACCAAUUAGGUAUAAUCAAUGGUAUCGCGGGACAAAAGACUAUCGACAUUUGGUACACUAUUUAUCAAUGGAUGUCUUAUUUUU hit 12 : 54 211 (fwd) 126.79 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 AU+CCCGCAAAUUCAUUCAG+UCUG+AAUAGA CUGUCAUUCAACCCCAAAAAUCUA 54 ---AUACCCGCAAAUUCAUUCAGGUCUGUAAUAGAUCUGUCAUUCAACCCCAAAAAUCUA 110 ,,,,,,,,,,,,,,,,,<<<<<<<<________>>>>>>>>,,,)))))))-))).<<<< 61 GuaCAAAUAuuGccUUcgccuguuuGGuaguAAaaacaggaAaugcgggcaaacu.aaga 119 GU+CAAAUAUU CCUUC:CC::U :GGUA UAA: A::GG:A +GCGGG AC+ AAGA 111 GUGCAAAUAUUACCUUCACCAAUUAGGUA-UAAUCAAUGGUAUCGCGGG---ACAaAAGA 166 <-<<<--<<<-<<<<<________>>>>>>>>->>>>>>>>:::::: 120 guaucGAcauUugauaAcAcUAUUuaucaaugggaucucuuauUUUU 166 :UAUCGACAUUUG:UA CACUAUUUA:CAAUG GAU:UCUUAUUUUU 167 CUAUCGACAUUUGGUA-CACUAUUUAUCAAUG-GAUGUCUUAUUUUU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #22639,sp|U22351.1|TC22351 Tetrahymena capricornis telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUACCCGCAUUUUCAUUCAGAUCUUUAAUGGAGCUGUCAUUCAACCCCAAAAAUCUAGUGCAACUACUGCCUUAACUACUUAGGCAAAAUAAGUCGUAAAGCGGGACAAGGCAUCGACAUUUGAUACAAAUAUUGAUCAAUGGAUAUCUUAUUUUU hit 13 : 82 237 (fwd) 106.44 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 AU+CCCGCA UUCAUUCAGAUC: +AAU:GA CUGUCAUUCAACCCCAAAAAUCUA 82 ---AUACCCGCAUUUUCAUUCAGAUCUUUAAUGGAGCUGUCAUUCAACCCCAAAAAUCUA 138 ,,,,,,,,,,,,,,,,,<<<<<<<<________>>>>>>>>,,,)))))))-)))<<<<< 61 GuaCAAAUAuuGccUUcgccuguuuGGuaguAAaaacaggaAaugcgggcaaacuaagag 120 GU+CAA UA UGCCUU+:C:::UU:GG+A +AA:AA:::G:AA GCGGG AC AAG: 139 GUGCAACUACUGCCUUAACUACUUAGGCA-AAAUAAGUCGUAAAGCGGG---AC-AAGGC 193 -<<<--<<<-<<<<<________>>>>>>>>->>>>>>>>:::::: 121 uaucGAcauUugauaAcAcUAUUuaucaaugggaucucuuauUUUU 166 AUCGACAUUUGAU: +A+UAUU:AUCAAUG GAU :CUUAUUUUU 194 -AUCGACAUUUGAUACAAAUAUUGAUCAAUG-GAUAUCUUAUUUUU 237 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #23997,sp|U22352.1|TP22352 Tetrahymena paravorax telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AAUCCCGCUAUUGCAUUCCAUUUCGAGUCAUUCAACCCCAAAAUUCUAGUACACACUAAAGCUUGCCUUUGGGCAUAUCAGGGGCAGCGGGAGAAUUUAGAAUUUCGACAUGUGGUACACUAUUUAUCUCAUGGAGAUUCUAAUUUUU hit 14 : 510 657 (fwd) 64.78 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 A :CCCGC A U CAUUC + U + GUCAUUCAACCCCAAAA UCUA 510 ---AAUCCCGCUAUUGCAUUCCA---UUUCGA------GUCAUUCAACCCCAAAAUUCUA 557 ,,,,,.,,,,,,,,,,,,<<<<<<<<________>>>>>>>>,,,)))))))-)))<<<< 61 GuaCA.AAUAuuGccUUcgccuguuuGGuaguAAaaacaggaAaugcgggcaaacuaaga 119 GUACA A UA GC+U :C:::U:GG+A UA :A:::G: A GCGGG: AA+U+AGA 558 GUACAcACUAAAGCUU---GCCUUUGGGCA-UAUCAGGGGC-A--GCGGGAGAAUUUAGA 610 <-<<<--<<<-<<<<<________>>>>>.>>>->>>.>>>>>:::::: 120 guaucGAcauUugauaAcAcUAUUuauca.augggau.cucuuauUUUU 166 :U:UCGACAU +G:UA CACUAUUUA:C+ AUG GA: :UCU+AUUUUU 611 AUUUCGACAUGUGGUA-CACUAUUUAUCUcAUG-GAGaUUCUAAUUUUU 657 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24421,sp|U22353.1|TS22353 Tetrahymena silvana telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUACCCGCAAAUUCACUCAAAUCUGUAAUAGGUUUGUCAUUCAACCCCAAAAAUCUAGUGCAAAUAUUACUUUCGCCAAUUAGGUAUAAUAAUGGUAAGCGGGACAAGACUCGACAUUUGAUACACUAUUUAUCAAUGGAUGUCUUUUUUCU hit 15 : 55 206 (fwd) 108.30 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 AU+CCCGCAAAUUCA UCA:A+CUG+AAUAG+ :UGUCAUUCAACCCCAAAAAUCUA 55 ---AUACCCGCAAAUUCACUCAAAUCUGUAAUAGGUUUGUCAUUCAACCCCAAAAAUCUA 111 ,,,,,,,,,,,,,,,,,<<<<<<<<________>>>>>>>>,,,)))))))-)))<<<<< 61 GuaCAAAUAuuGccUUcgccuguuuGGuaguAAaaacaggaAaugcgggcaaacuaagag 120 GU+CAAAUAUU C+UUC+CC:+UU:GGUA UAA:AA :GG+AA GCGGG AC AAGA: 112 GUGCAAAUAUUACUUUCGCCAAUUAGGUA-UAAUAA-UGGUAA-GCGGG---AC-AAGAC 164 -<<<--<<<-<<<<<________>>>>>>>>->>>>>>>>:::::: 121 uaucGAcauUugauaAcAcUAUUuaucaaugggaucucuuauUUUU 166 UCGACAUUUGAUA CACUAUUUAUCAAUG GAU:UCUU+UUU U 165 --UCGACAUUUGAUA-CACUAUUUAUCAAUG-GAUGUCUUUUUUCU 206 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24971,sp|U22354.1|TV22354 Tetrahymena vorax telomerase RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUACCCGCACAUUCACUCAAAUCUGUAAUAGACUUGUCAUUCAACCCCAAAAAUCUAGUGCAAAUAUUACCUUCGCCAAUUAGGUACAAUUAAUGGUUCUCGCGGGACAAAAGACUAUCGACAUUUGAUACAUUAUUUAUCAAUGGAUGUCUUAUUUUU hit 16 : 218 376 (fwd) 113.52 bits (((-(((((((,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,, 1 aguAugcccgcaAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUA 60 AU+CCCGCA AUUCA UCA:AUCUG+AAUAGA+:UGUCAUUCAACCCCAAAAAUCUA 218 ---AUACCCGCACAUUCACUCAAAUCUGUAAUAGACUUGUCAUUCAACCCCAAAAAUCUA 274 ,,,,,,,,,,,,,,,,,<<<<<<<<________>>>>>>>>,,,.)))))))-))).<<< 61 GuaCAAAUAuuGccUUcgccuguuuGGuaguAAaaacaggaAau.gcgggcaaacu.aag 118 GU+CAAAUAUU CCUUC+CC::U :GGUA AA: A::GG+ U GCGGG AC+ AAG 275 GUGCAAAUAUUACCUUCGCCAAUUAGGUA-CAAUUAAUGGUUCUcGCGGG---ACAaAAG 330 <<-<<<--<<<-<<<<<________>>>>>>>>->>>>>>>>:::::: 119 aguaucGAcauUugauaAcAcUAUUuaucaaugggaucucuuauUUUU 166 A:UAUCGACAUUUGAUA CA UAUUUAUCAAUG GAU:UCUUAUUUUU 331 ACUAUCGACAUUUGAUA-CAUUAUUUAUCAAUG-GAUGUCUUAUUUUU 376 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz Filter report: done 1.65905e+10 nucs (frac lets thru so far=3.77565e-07, 2d-fracLetsThru=2.62282e-07). done 1.65905e+10 nucs (frac lets thru so far=3.77565e-07, 2d-fracLetsThru=2.62282e-07). CPU time: 548449.92u 476.14s 152:28:46.06 Elapsed: 152:44:23