params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,9644,AF054814.1,1,sp|AF054814.1|AF054814 Bos taurus telomerase RNA gene; complete sequence.,0,0,6,435,363.49,UGGGCCCCGGGUUGGUGGCAGCCAUUUCUCAUCUAACCCUAAUUGAGACAGGCGUAGGCGCUGUGCUUUUGGUUACCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACCGCCAUCCACCAUCCAGUCUGCAACAAACAAAAAAUGUCAGCCGCUGGCUCGCUCACCUCUCCCGGGAACCUGCGGUGGUCCGCCCGCCCAGCCCCAGUGCCCCGCCUGAGGCCGCGGUCGGCCCGGUGCUUCUCCGGAGGUGUCCAUUGCCGCCGUGAAGAAUUGGGCUCUGUCAGCCGCGGGUCGCUCGGUGGGCCGAGGCAUGGCUGUAACCGCAGGGAAAGGAACGGAGUGGGGUCCCCGCGCGCGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUCGGCUCAGACAUCC,AF054814.1/6-435,6-435,0,429,AF054814.1/6-435
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16798,AF221906.1,1,sp|AF221906.1|AF221906 Dasypus novemcinctus telomerase RNA gene; sequence.,0,1,110,545,372.21,GGGCCCGGGAGGGGUGAGCGUCCAUUAUCGUCUAACCCUAACUGAGAUGGGCGUAGGCGCCGCGCUUUUGCUUCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACUGCCGUCUACUGUCGUAUCUGGAGCAAACAAAAAAUGUCAGCCGCUGGUCCGCUCGCCCCAUCCGGGAACCUGCGGUGGCUCGUCCGCCCUGCCCCCGCGCUCCGCCUAGAGGCCGCGGUCCGCCCGGGGCUUCUCCGGAGGCACCCAAUGCAGCCGCGAAGAGUUAGGCUCUGUCAGCCGCGGAUCCCGCGGGGGCCAAGGGUGAGGCUUAGGCCGCGGGCCGCAGGAAGAAAAACCGAGCGAGUUCUCACGCGCGGUGCGCUUCCCUGAGCUGUGGGUCGUGCGCCUGGGACUCGGCUCAGACACGU,AF221906.1/110-545,110-545,0,435,AF221906.1/110-545
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16799,AF221912.1,1,sp|AF221912.1|AF221912 Tupaia glis belangeri telomerase RNA gene; sequence.,0,2,110,564,341.72,UGGGCCCGGGACGGGCGCGGACCCGGUAAUCUAACCCUGACUCACAAGAGGCGUAGGCGCCGUGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGUUCGGAAAAGCCCUGUGGCCUAUCGCCAUCCACCAUCCUUUCUGGAACAAACAGACAAAAAAAAAAAUGUCAGCUGCUGGUCCGUUCGCUCCUCCCGGGCCCUGCGGUGGCCGCCAGCCCGCCCUCUCAUCCCCCGCGUCCCGCCUAGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGUGCCCAUUGCCGCCGCGAAGAGUUAGGCUCUGUCAGCCGCGGGCUCUCGGGGGGCCCAGGGCGAGGUUUAGGCCUCGUGGCCGCAGGGACAGCAACGGAGCGGGUCCCCGCGAGCCUGUGCGCGUCCCUGAGCCGUGGGACUUGCACCGGGGACUUUGCUCGGACAAUC,AF221912.1/110-564,110-564,0,454,AF221912.1/110-564
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16800,AF221917.1,1,sp|AF221917.1|AF221917 Procyon lotor telomerase RNA gene; sequence.,0,3,112,542,403.71,UGGGCCUGGGAGGGGUGGCGGUCGUUUUAUGUCUAACCCUAACUGAGAAGGGCAUAGGCGCUGCGCUUUUGUUCCCCGCACGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACUGCCAUCCACCAUCCAGUUUGGAGCAAACAAAAAAUGUCAGCCGCCGGCCUGCUCGCCCCUCCCGGGAUCCUGCGGUGGCUCGCCCGCUUAGCCCCCGCGUCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCAUUGCCGUCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGACCUUUGGGGGCCAAGGGCGAGGCUCUGGCCGCAGGGAGAGAAAACGGAGCGGGUCCCCUUGCGCGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUAGGCUCACACACAU,AF221917.1/112-542,112-542,0,430,AF221917.1/112-542
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16801,AF221918.1,1,sp|AF221918.1|AF221918 Oryctolagus cuniculus telomerase RNA gene; sequence.,0,4,110,547,401.42,UGGGCUCGGGAGGGGCCCGGUCAUUUCUCAUCUAACCCUAACUGAGCAGGGCGUAGGCGCCGCGCUUUUGUUUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGCGUGGGAAAAGCCUUGGCCUACCGCCGUCCACCGUUCAUUUCGCAGUAAACAAAAAAUGUCAGCCGCUGGCCGGUUCGCCCUUCCCGGGGACCUGCGGUGGCUCGCCCGCCCGGCCCCCGUGCCCCGCCUGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGUGCCCAAUGCCGCCGCGAAGAGUUAGGCUCUGUCAGCCGCGGGUCCCUCGGGGGCCAAGGGCGAGGCGCAGGCCGUCUGGCCGCAGGGAGAGGAACGGAGCGGGUCCCCCAGCGUGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUCGGCUCAAACACGC,AF221918.1/110-547,110-547,0,437,AF221918.1/110-547
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16802,AF221919.1,1,sp|AF221919.1|AF221919 Dasyurus hallucatus telomerase RNA gene; sequence.,0,5,115,614,205.59,GGGCUGCGUGGGCGGGUCGGUCCGUCCUGGCACAUCUAACCCUAAAUGCGCGCUGGUUGAAGUGGCUUCUCCUGGGCGAUCGCUCGCUGUUUUUGUGGCUGGCUUUCAGCGGGCUGGAGGAGCCGGGAGCGGAGGCGGAGGACCGAGCCAAAAACGUCAGCCGAGGCCGGGCGGCCCCGCUCGUGGCCCGUCCGCACUGUCCGGGCCAGGCCCCGGCCCGAACCCCCUGGAGACAACUCCCGCAGGGUCUGCGCUGCGCCGCGGAGCCCCGGCUGCCCACGUAGAGGCGGCGGCCGUCUCGGGGCCCCUGCGUGCGGGGCGCCCACUGCGGCCGCCAAGAGCUCGUCUCUGUCAGCCUCGGGUGCACGUGGGCCCGCGGUCGAGCCCUAAGGCCGGGCGUGGGGCUGGGGUCGCAGGGAGAGUAACCGUGAGCCGGCGCCCAGCCUUCAGGGCGCUCCCUCGAGCUAUGGGAGCUGCCCCCGGGCACGGCUCGGACACCC,AF221919.1/115-614,115-614,0,499,AF221919.1/115-614
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16803,AF221920.1,1,sp|AF221920.1|AF221920 Sus scrofa telomerase RNA gene; sequence.,0,6,112,541,383.80,UGGGCCCAGGAGCGGUGGCGGCCAUUUUUUAAGUCUAACCCUAACUGAAAGAGGCGUAGGCGCUGCGCUUUUGCUUCACGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACCGCCAUCCACCAUCCAGUCUGAAACAAACAAAAAAUGUCAGCCUCUGGCUCGCUCACUGCUCCCGGGAACCUGCGGUGGUUCGCCCGCCCAGCCCCCGCGCCCCGCCUGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCGCCCAUUGCCGCCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCCCUCGGGGGCCAAGGCGAGGCUCUGACCGCAGGGAAAGGAACGGAGUUGGUCCCCGCGCGCUGUGCGCUUCCCUAAGCUGUGGGCUGUGCACCUGGGACUCGGCUCAGACACUU,AF221920.1/112-541,112-541,0,429,AF221920.1/112-541
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16804,AF221921.1,1,sp|AF221921.1|AF221921 Suncus murinus telomerase RNA gene; sequence.,0,7,102,548,258.11,GGUUGCGGGAGCUGCGAGCGGCCGUCUCGUCUAACCCUAAAGAGAAAGGCGUAGGUGCUUGGCCUUGGCGACUCGCCCGCUGUUUUUUGGCUGGCUUUCAGCGGGUGAAGAGGCCCAAGACCUACCGCCACCCACCGUCUAGUGUCUUAAGGGCACAAAGUCCUGCCCGCCACCCUUCGAGGAGCGAAACCCAAAAAAGUCAGCCCCUGGCCGCCUCUCGCCCUCUCGCAACCCGCCUCCGUCCCAGCCUCCAUCCCCGCCCCAGGCCGCGGUCGGUCCGGGCUUCUUCGGAAGUCCCGUUGCCGUCGCGAAGAGUUCGCCUCUGUCAGCCGCGGGGCUUGGGGCCAGGGACGGGACCCUGUCCGCAGGGAGAGAAACUGGAGCCGGGCCCUCCACGGUGCCUCCCCGAGCUGUGGGAUCUGCACCCGGGACUCGAACCCUACACUU,AF221921.1/102-548,102-548,0,446,AF221921.1/102-548
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16805,AF221923.1,1,sp|AF221923.1|AF221923 Trichechus manatus telomerase RNA gene; sequence.,0,8,123,554,367.26,CCCGGGUCGGGCAGUGGUCUUUUUUGUUCUAACCCUAACUGGCAAGGGCGUAGGUGCUGUGCUUUUGUUCCCCGCGCGUUGUUUUUCUCGCUGACUUUCAGCGGGCGGGAAAAGCCCUGGCCUACCGCCGUCUACCGAUAGUUUGGAGCAAACAAAAAAAUGUCAGCCGCUGGCCGCUCACCCCUCCCGGGAACCUGUGGUGGCUCGCCCGCCCAGCCCCGCGCCCCGCCUGGAGGCCGCGGUCGGCCUGGGGCUUCUCCGGAGGUUCCCAUUGCCGCCGCGAAGAGUUAGGCUCUGUCAGCCGCGGGUCCUGCGGGAACCAAGGGCGAGGCUUAGGCCUCCUGAACGCAGGGAGAGAAAUGGAGCGAUUCCCCGAGUACGUGUGCUUCCCUGAGUUGUGGGAUGUGCGUCCGGGACUCAGCUCCGACAGGU,AF221923.1/123-554,123-554,0,431,AF221923.1/123-554
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16806,AF221925.1,1,sp|AF221925.1|AF221925 Equus caballus telomerase RNA gene; sequence.,0,9,111,540,400.53,UGGGUCUGGGCGGGGCGGCGGUCACGUUUUGUCUAACCCUAACUGAGCUGGGCGGAGGCGCCGCGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGUCUACCGCCACUUACCAUCCAGUCUGGAGUAAACAAAAAAUGUCAGCCGCUGGCUCGCUCGCCCCUCCCGGGACCCUGCGACGGCUCGCCCGCCCAGCCCCCGCGCCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCGCCCAAUGCCGCCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUGCCUCGGGGGCCAGGGACGAGGCUCUGGCCGCAGGGAGAGGAACGGAGCGGGUCCCCGCGCGCGGUGCGCUUCCCUGAGCUGUGGGACGUGCACCCGGGACUCGGCUCAAACACGU,AF221925.1/111-540,111-540,0,429,AF221925.1/111-540
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16807,AF221931.1,1,sp|AF221931.1|AF221931 Mustela putorius furo telomerase RNA gene; sequence.,0,10,112,541,397.98,UGGGCUCGGGAGGGGUGGCGGUCAUUUUCUGUCUAACCCUAACUGAAACGGGCGUAGGCGCUGCGCUUUUGUUCCCCGCACGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUUGGCCUACUGCCACACACCAUCCAGUUUGGAGCAAACAAAAAAUGUCAGCGGCUGGCCUGCUCGCCCCUCCCGGGAGCCUGCGGCGACUCGCCCGCUUAGCCCCCGCAUCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCAUUGCCGUCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGACCCUUGGGGGCCAAGGGCGAGGCUCUGGCCGCAGGGAGAGAAACGGAGCGGGUCCCCUCGCGCGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUAGGCUCACACACAC,AF221931.1/112-541,112-541,0,429,AF221931.1/112-541
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16808,AF221932.1,1,sp|AF221932.1|AF221932 Elephas maximus telomerase RNA gene; sequence.,0,11,115,549,372.46,UACGCCCGGGAGGGCGGUGGUCUGUUCUGUUCUAACCCUAACUGAUAAGGGCGUAGGCGCCGUGCUUUUGUUCCCCGCGCGUUGUUUUUCUCGCUGACUUUCAGCGGGCGGGAAAAGCCUCGGUCUACCGCCGUCUACCGAUAGCCUGGAGCAAACAAAAAAAUGUCAGCCGCCGGCCGCUCGCCCCUCCCGGGAACCUGCAGUGGCUCGCCCGCCCAGCCCCGCUCCCCGCCUGGAGGCCGCGGUCGGCCUGGGGCUUCUCCGGAGGUUCCCGCUGCCGCCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCCCGCGGGAACCAAGGGCGAGGCUGGGGCCUCCUGAACGCAGGGAGAGAAACGGAGCGGUUCCCCGCGUGCGUGCGCUUCCCUGAGUUGUGGGAUGUGCGCUCGGGGCUCAGCUCCGACAGGU,AF221932.1/115-549,115-549,0,434,AF221932.1/115-549
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16809,AF221936.1,1,sp|AF221936.1|AF221936 Bos taurus telomerase RNA gene; sequence.,0,12,111,540,368.66,UGGGCCCCGGGUUGGUGGCAGCCAUUUCUCAUCUAACCCUAAUUGAGACAGGCGUAGGCGCUGUGCUUUUGGUUACCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACCGCCAUCCACCAUCCAGUCUGCAACAAACAAAAAAUGUCAGCCGCUGGCUCGCUCACCUCUCCCGGGAACCUGCGGUGGUCCGCCCGCCCAGCCCCAGUGCCCCGCCUGAGGCCGCGGUCGGCCCGGUGCUUCUCCGGAGGUGUCCAUUGCCGCCGUGAAGAGUUGGGCUCUGUCAGCCGCGGGUCGCUCGGUGGGCCGAGGCAUGGCUGUAACCGCAGGGAAAGGAACGGAGUGGGGUCCCCGCGCGCGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUCGGCUCAGACAUCC,AF221936.1/111-540,111-540,0,429,AF221936.1/111-540
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16810,AF221939.1,1,sp|AF221939.1|AF221939 Felis catus telomerase RNA gene; sequence.,0,13,112,544,398.05,UGGGCCUGGGAGGGGAAGCGGUCAGUUUUUGUCUAACCCUAACUGAGAAGGGCGUAGGCGCCGCGCUUUUGUUUCCCGCACGCUGUUUUUUUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACCGCCGUCCACCGUACAGUUUGGAGCAAACAAAAAAUGUCAGCUGCUGACUUGCUCGCCCCUCCCAGGACCCUGCGGUGGCUCGCCUCCUUAGCCCCCGCGUCCCGCCUAGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCAUUGCCGUCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCCCUUGGGGGGGCCGAGGGCGAGGCUCUGACCGCAGGGAGAGAAACGGGAGCAGGUCCCCGCGCGCGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUGGGCUCAGACACAU,AF221939.1/112-544,112-544,0,432,AF221939.1/112-544
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16811,AF221941.1,1,sp|AF221941.1|AF221941 Bos taurus telomerase RNA pseudogene.,0,14,267,696,364.72,UGGGCCCCGGGUUGGUGGCAGCCAUUUCUCAUCUAACCCUAAUUGAGACAGGCGUAGGCGCUGUGCUUUUGGUUACCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACCGCCAUCCACCAUCCAGUCUGCAACAAACAAAAAAUGUCAGCCGCUGGCUCGCUCACCUCUCCCGGGAACCUGCGGUGGUCCGCCCGCCCAGCCCCAGUGCCCCGCCUGAGGCCGCAGUCGGCCCGGUGCUUCUCCGGAGGUGUCCAUUGCCGCCGUGAAGAGUUGGGCUCUGUCAGCCGCGGGUCGCUCGGUGGGCCGAGGCAUGGCUGUAACCGCAGGGAAAGGAACGGAGUGGGGUCCCCGCGCGCGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUCGGCUCAGACAUCU,AF221941.1/267-696,267-696,0,429,AF221941.1/267-696
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,16812,AF221942.1,1,sp|AF221942.1|AF221942 Sus scrofa telomerase RNA pseudogene.,0,15,106,459,86.72,GGCCGGGAGAGGAGUGGCCAUUUUUAAAAUCUGACCCUAACUGAAACAGGUGUAGGCACUGCACUUUUGCUUCCUCGAGCGCUGUUUUUCUUGCUGACUUUCAGCGGAUGGAAGAGCCACCAUCCAGUCUGAAACAAACAAAAAAUGUCAGCCACUGGCUCGGUCACUGCUCCCGGGAACCUAAGAGUCUCGCCCGCCCAGCCCCCCGCUUCUCCCAAAGGGCCCACUGCCUCCGCGAAGAGUUGGGCUGUGUCAGCCGCGGGUUUCUCGGGGCCAAGGCGAGGCUCUGACCGCAGGGAAAGGAAGAGUUCCCUAAGCUGUGGCAUGUGCAGCCAGGACUUGGCUCAGAUACUU,AF221942.1/106-459,106-459,0,353,AF221942.1/106-459
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,9663,AF047387.1,1,sp|AF047387.1|AF047387 Mus musculus telomerase RNA (terc) gene; promoter and complete sequence.,0,16,1535,1956,259.65,GGUCGAGGGCGGCUAGGCCUCGGCACCUAACCCUGAUUUUCAUUAGCUGUGGGUUCUGGUCUUUUGUUCUCCGCCCGCUGUUUUUCUCGCUGACUUCCAGCGGGCCAGGAAAGUCCAGACCUGCAGCGGGCCACCGCGCGUUCCCGAGCCUCAAAAACAAACGUCAGCGCAGGAGCUCCAGGUUCGCCGGGAGCUCCGCGGCGCCGGGCCGCCCAGUCCCGUACCCGCCUACAGGCCGCGGCCGGCCUGGGGUCUUAGGACUCCGCUGCCGCCGCGAAGAGCUCGCCUCUGUCAGCCGCGGGGCGCCGGGGGCUGGGGCCAGGCCGGGCGAGCGCCGCGAAGGACAGGAAUGGAACUGGUCCCCGUGUUCGGUGUCUUACCUGAGCUGUGGGAAGUGCACCCGGAACUCGGUUCUCACAACC,AF047387.1/1535-1956,1535-1956,0,421,AF047387.1/1535-1956
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,15813,AF221922.1,1,sp|AF221922.1|AF221922 Mus musculus telomerase RNA gene; sequence.,0,17,70,490,264.01,GGUCGAGGGCGGCUAGGCCUCGGCACCUAACCCUGAUUUUCAUUAGCUGUGGGUUCUGGUCUUUUGUUCUCCGCCCGCUGUUUUUCUCGCUGACUUCCAGCGGGCCAGGAAAGUCCAGACCUGCAGCGGGCCACCGCGCGUUCCCGAGCCUCAAAAACAAACGUCAGCGCAGGAGCUCCAGGUUCGCCGGGAGCUCCGCGGCGCCGGGCCGCCCAGUCCCGUACCCGCCUACAGGCCGCGGCCGGCCUGGGGUCUUAGGACUCCGCUGCCGCCGCGAAGAGCUCGCCUCUGUCAGCCGCGGGGCGCCGGGGGCUGGGGCCAGGCCGGGCGAGCGCCGCGAGGACAGGAAUGGAACUGGUCCCCGUGUUCGGUGUCUUACCUGAGCUGUGGGAAGUGCACCCGGAACUCGGUUCUCACAACC,AF221922.1/70-490,70-490,0,420,AF221922.1/70-490
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,28383,AY058900.1,1,sp|AY058900.1|AY058900 Mus musculus castaneus telomerase RNA; genomic sequence.,0,18,1,397,238.16,ACCUAACCCUGAUUUUCAUUAGCUGUGGGUUCUGGUCUUUUGUUCUCCGCCCGCUGUUUUUCUCGCUGACUUCCAGCGGGCCAGGAAAGUCCAGACCUGCAGCGGGCCACCGCGCGUUCCCGAGCCUCAAAAACAAACGUCAGCGCAGGAGCUCCAGGUUCGCCGGGAGCUCCGCGGCGCCGGGCCGCCCAGUCCCGUACCCGCCUACAGGCCGCGGCCGGCCUGGGGUCUUAGGACUCCGCUGCCGCCGCGAAGAGCUCGCCUCUGUCAGCCGCGGGGCGCCGGGGGCUGGGGCCAGGCCGGGCGAGCGCCGCGAGGACAGGAAUGGAACUGGUCCCCGUGUUCGGUGUCUUACCUGAGCUGUGGGAAGUGCACCCGGAACUCGGUUCUCACAACC,AY058900.1/1-397,1-397,0,396,AY058900.1/1-397
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,54145,U33831.1,1,sp|U33831.1|MM33831 Mus musculus telomerase RNA component gene.,0,19,66,486,264.95,GGUCGAGGGCGGCUAGGCCUCGGCACCUAACCCUGAUUUUCAUUAGCUGUGGGUUCUGGUCUUUUGUUCUCCGCCCGCUGUUUUUCUCGCUGACUUCCAGCGGGCCAGGAAAGUCCAGACCUGCAGCGGGCCACCGCGCGUUCCCGAGCCUCAAAAACAAACGUCAGCGCAGGAGCUCCAGGUUCGCCGGGAGCUCCGCGGCGCCGGGCCGCCCAGUCCCGUACCCGCCUACAGGCCGCGGCCGGCCUGGGGUCUUAGGACUCCGCUGCCGCCGCGAAGAGCUCGCCUCUGUCAGCCGCGGGGCGCCGGGGGCUGGGGCCAGGCCGGGCGAGCGCCGCAAGGACAGGAAUGGAACUGGUCCCCGUGUUCGGUGUCUUACCUGAGCUGUGGGAAGUGCACCCGGAACUCGGUUCUCACAACC,U33831.1/66-486,66-486,0,420,U33831.1/66-486
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,4877,AF221909.1,1,sp|AF221909.1|AF221909 Microtus ochrogaster telomerase RNA gene; sequence.,0,20,86,496,241.53,GGGCGGACGGGCGACGCGCGCCUCUUCUAACCCUAAAAACUGGAGCUGUAGGUGUUGCUCUUUCAGCGUCGCCCGCUGUUUUUCUCGCUGGCUUUCAGCGGGCCAGAAAGUUCAGACCUCUCAGCAGAUCGUCGCGUCGUUCUCAACCACAAAAAAUGCCAGCGCAAAGCGCGUCAGCCUAGAACCUUGCGGCCCCGGGCCGCCCAGCCCCGCACCCGCCUUGAGGCCGCGGUUGGCCUGGAGUUCUCCGGACUCCGCUGCCGCCGCGAAGAGUUCGUCUCUGUCAGCCGCGGAGUAUCAGGGGCUGGGGCCAGGCCCGGACAGCGUCGCAAGUACAGUAACGGAGCUGGUCCUUGUUCGGUGGCUUCCCUGAGCUGUAGGAAGUACACCCAGAGCUCGGCUCCUACAACC,AF221909.1/86-496,86-496,0,410,AF221909.1/86-496
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,4878,AF221916.1,1,sp|AF221916.1|AF221916 Rattus norvegicus telomerase RNA gene; sequence.,0,21,69,481,245.54,GGGACAAGGGCCGCGCGACUUCUGCGUCUAACCCUAUUGUUAUAGCUGUGGGUUCUGUUCUUUUGUUCUCCGCCCGCUGUUUUUCUCGCUGACUUUCAGCGGGCCUGGAAAGUUCAGACCUGCAGCGGGUCACCGCGCAUUCUGGAACCUCAAAAAAUGUCAGCGUAGGAGCUCUGGUGCCAGAGCUCCGCGGCGCUGGGCCGCCCAGCCCGGUACCCGCCUGGAGGCCGCGGACGGCCUGGGGUCUUAGAACUCCGCUGCCGCCGUGAAGAGCUAGUCUCUGUUAGCUACGGGGCACCGGGCGCUGGGGUCAGGCCGGGAGAGCGCCGCAAGGACAGUAACGGAACUGGUCCCUGAGUUCGGUGGCUUUCCUGAGAUGUGGGAAGUGCACCUGGAACUCAGUUCCUACAACC,AF221916.1/69-481,69-481,0,412,AF221916.1/69-481
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,4879,AF221928.1,1,sp|AF221928.1|AF221928 Cricetulus griseus telomerase RNA gene; sequence.,0,22,73,476,249.94,GCGACCUGGCGGGCGGCUGCCAGUCUAACCCUGAAUUCUGAGAGCUGUGGGUACUGUGCUUUCGUCUCCGCCCGCUGUUUUUCUCGCUGACUUCCAGCGGGCGGGAAAGUCCAGACCUGCAGCGGGCCAUCGCGCGUUUUCCACCACAAAAAAAUGUCAGCGCUGGGCUCAUGUGCCUGGAGCCUUGCGGCCGGCCGCCCAGCCCCGCACCCGCCUGAGGCCGCGGUCGGCCUGGAGUCCUCGGGCUCCGCUGCCGCCGCGAAGAGCUAGACUCUGUCAGCCGCGGGGCGUCAGGGGCUGGGGCGAGCCCCGGCAGCGCCGCAAGCAGAGAAACGGAGCUGGUCCCGUGAACGGUGACUUCCCUGAGUUGUGGGAAAUGCACCAGGAACUCGGUUCCCACAACC,AF221928.1/73-476,73-476,0,403,AF221928.1/73-476
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,4880,AF221929.1,1,sp|AF221929.1|AF221929 Cavia porcellus telomerase RNA gene; sequence.,0,23,92,517,319.11,UGGGCCGGGAGGGGUGGUGGUCUUCCCUGUCUAACCCUAAGGUGAAGAGGACGUGGGUGCCGUGUUUUUCGCUCCCGCACGCUGUUUUUCUCGCUGACUUUCAGCGUGCAGAAAAGCCUUGGCCUACCGUCGGUUAUUGUCUAAUUAGAAGCAAACAAAAAAUGUCAGCGUGGCCGGGCCGCCCCUCCCGGAUACCUGCGGCGGCUCGUCCACCGGCCCCCGAGCCCCGCCUAGGCCGCGGCCGGCGCGGGGCUUCCCUGGAGGCGCCCAUGGCCGCCGCGAAGAGUUCGUCUCUGUCAGCUGCGGGUCGCCCGGGGGCCGCGGGAGAGUCCCAGGCCUUGGCCGCAGGGAGAGAAACGGAGCAGGUCCUCGCGCGGUGCACUCCCCUGAGCUGUGGGAAGUGCACCGGGACGGGCUCCUACAAGC,AF221929.1/92-517,92-517,0,425,AF221929.1/92-517
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,4881,AF221930.1,1,sp|AF221930.1|AF221930 Geomys breviceps telomerase RNA gene; sequence.,0,24,101,546,302.72,GUGCCUGGGAGGGGGGGCUGGUCCCACUCUUCUAACCCUAAGGGUGUCGGCUGUAGGCGCCGUGCUUUUUACUUCCCCGCGCGCUGUUUUUCUGGCUGGCUUUCAGCGAGCGGAAAAAGCUUUGGUCUACAGGCCACUCACUUUGUAUCCCGAAACCAAAUUGAAAAAAAAAAAUGCCAGCUCCGGCCGGUCCACCCCUCCCGGGGUCCUGCGGCCCGGCCGCCCGCCCGAACCCCCCGCGACCCGCCUGAGGCCACGGCCGGCCCGGGGCCUCUGCGGAGGUGCCCAUUGCCGCCGCGAAGAGUUAGGCUCUGUCAGCCGCGGGAUCCGCGCGGGCCGGGCCGCGGCCGGACGCCGAUCCGCAGGGACAGCAACGGAACCGGCCCCUUCGCCCUGUGCGCUUCCCGGAGCUGUGGGAUGAGCACCCGGGGUCGGCUCCUACAGUU,AF221930.1/101-546,101-546,0,445,AF221930.1/101-546
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,4882,AF221937.1,1,sp|AF221937.1|AF221937 Chinchilla brevicaudata telomerase RNA gene; sequence.,0,25,112,545,333.86,UGGGCCGGGAGGGGAGGUGGGCAUGUUUUGUCUAACCCUAACUAGGAGGAGGACGUAGGCGCCGUGCUUUUGUUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGUGCGGAAAAGCCUUGGCCUGCCGUCGACCACUGUCUAAUUAAAAGCAAACAAAAAAUGUCAGCGUGGCCGGUCCGCCCCUCCCGGGUACCUGCGGCAGCUCGCCCGGCUGGCCCCCGAGCCCCGCCCAGGGCCACGGCUGGCGCGGGGCUUCUCCGGGAGCGCCAUGGCCGCCGCGAAGAGUUCGUCUCUGUCAGCCGCGGGUCGCGCGGGGGCCGCGGGGGAGUCCUAGGCCGAGUGGCCGCAGGAAGAGAAACGGAGCCUGUCCCUGUGCACGGGGCGCUUCUCUGAGCUGUGGGAAGUGCCCCGAGACUCGGCUCCUACAAGC,AF221937.1/112-545,112-545,0,433,AF221937.1/112-545
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,8894,AY058901.1,1,sp|AY058901.1|AY058901 Mus spretus telomerase RNA; genomic sequence.,0,26,1,397,224.84,ACCUAACCCUGAUUUUCAUUAGCUGUGGGUUCUGGUCUUUUGUUCUUCGCCCGCUGUUUUUCUCGCUGACUUCCAGCGGACCAGUAAAGUCCAGACCUGCAGCGGGCCACCGCGCGUUCCCGAGCCUCAAAAACAAACGUCAGCGCAGGAGCUUCAGGUUCGCCGGGAGCUCCGCGGCGUCGGGCCGCCCAGUCCCGUACCCGCCUACAGGCCGCGGCCGGCCUGGGGUCUUAGGACUCCGCUGCCGCCGCGAAGAGCUCGCCUCUGUCAGCCGCGGGGCGCCGGGGGCUGGGGCCAGGCCGGGCGAGCGCCGCGAGGACAGGAAUGGAACUGGUCCCCGUGUUUGGUGUCUUACCUGAGCUGUGGGAAGUGCACCCGGAACUCGGUUCUCACAACC,AY058901.1/1-397,1-397,0,396,AY058901.1/1-397
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,36726,AF147806.1,1,sp|AF147806.1|AF147806 Gallid herpesvirus 2 terminal repeat long (TRL) region; partial sequence; unique long (UL) region; complete sequence; and internal repeat long (IRL) region; partial sequence.,0,27,250,692,156.09,CGUGGCGGGUGGAAGGCUCCGCUGUGUCUAACCCUAAUCGGAGGUAUUGAUGGUACUGUCGCCGCGCUCCCUCCGCCCGCUGUUUACUCGCUGACUUUCAGCGGGCUAGGGGAGCCGCCCCAGGGGGCGCCGCGGGGGGGAGGGGGUGGGGCGGACGCGGGAGAAAGGACCGAAAGGGGCUCCACGGCAAACAAAAAAAAAAAAACGUCAGCGAGGGGUCCUCUCGCCCCCAUCCGCCCUGGGGUCCUCGCCCGCAGGCCGCGGUCGGCCGGCACCCGCCAUUGCCGCCGCGAAGAGUUCGCCUCUGUCAGCCUCGGCGGGGCCCGGGAGAUGCGGAGCGCGGCCCCGCGCCCCCAGCAGAGCAACACGGGAGCGGCGCCCCCGGGGCAACCCCCGCGCCCCCCUGCGCCGUGGGGCGCGCGGACGGCGUCGCUCCCACACGC,AF147806.1/250-692 AF147806.1/138426-137984,250-692 138426-137984,0,442,AF147806.1/250-692
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,36726,AF147806.1,1,sp|AF147806.1|AF147806 Gallid herpesvirus 2 terminal repeat long (TRL) region; partial sequence; unique long (UL) region; complete sequence; and internal repeat long (IRL) region; partial sequence.,1,28,138426,137984,156.09,CGUGGCGGGUGGAAGGCUCCGCUGUGUCUAACCCUAAUCGGAGGUAUUGAUGGUACUGUCGCCGCGCUCCCUCCGCCCGCUGUUUACUCGCUGACUUUCAGCGGGCUAGGGGAGCCGCCCCAGGGGGCGCCGCGGGGGGGAGGGGGUGGGGCGGACGCGGGAGAAAGGACCGAAAGGGGCUCCACGGCAAACAAAAAAAAAAAAACGUCAGCGAGGGGUCCUCUCGCCCCCAUCCGCCCUGGGGUCCUCGCCCGCAGGCCGCGGUCGGCCGGCACCCGCCAUUGCCGCCGCGAAGAGUUCGCCUCUGUCAGCCUCGGCGGGGCCCGGGAGAUGCGGAGCGCGGCCCCGCGCCCCCAGCAGAGCAACACGGGAGCGGCGCCCCCGGGGCAACCCCCGCGCCCCCCUGCGCCGUGGGGCGCGCGGACGGCGUCGCUCCCACACGC,AF147806.1/250-692 AF147806.1/138426-137984,250-692 138426-137984,0,442,AF147806.1/138426-137984
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,51700,AF243438.1,1,sp|AF243438.1|AF243438 Gallid herpesvirus 2 serotype 1 isolate Md5; complete genome.,0,29,1679,2117,158.88,CGUGGCGGGUGGAAGGCUCCGCUGUGUCUAACCCUAAUCGGAGGUAUUGAUGGUACUGUCGCCGCGCUCCCUCCGCCCGCUGUUUACUCGCUGACUUUCAGCGGGCUAGGGGAGCCGCCCCAGGGGGCGCCGCGGCGGGGAGGGGGUGGGGCGGACGCGGGAGAAAGGACCGAAAGGGGCUCCACGGCAAACAAAAAAAAACGUCAGCGAGGGGUCCUCUCGCCCCCAUCCGCCCUGGGGUCCUCGCCCGCAGGCCGCGGUCGGCCGGCACCCGCCAUUGCCGCCGCGAAGAGUUCGCCUCUGUCAGCCUCGGCGGCGCCCGGGAGAUGCGGCGCGCGGCCCCGCGCCCCCAGCAGAGCAACACGGGAGCGGCGCCCCCGGGGCAACCCCCGCGCCCCCCUGCGCCGUGGGGCGCGCGGACGGCGUCGCUCCCACACGC,AF243438.1/139941-139503 AF243438.1/1679-2117 AF331499.1/229-667,139941-139503 1679-2117,0,438,AF243438.1/1679-2117
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,51700,AF243438.1,1,sp|AF243438.1|AF243438 Gallid herpesvirus 2 serotype 1 isolate Md5; complete genome.,1,30,139941,139503,158.88,CGUGGCGGGUGGAAGGCUCCGCUGUGUCUAACCCUAAUCGGAGGUAUUGAUGGUACUGUCGCCGCGCUCCCUCCGCCCGCUGUUUACUCGCUGACUUUCAGCGGGCUAGGGGAGCCGCCCCAGGGGGCGCCGCGGCGGGGAGGGGGUGGGGCGGACGCGGGAGAAAGGACCGAAAGGGGCUCCACGGCAAACAAAAAAAAACGUCAGCGAGGGGUCCUCUCGCCCCCAUCCGCCCUGGGGUCCUCGCCCGCAGGCCGCGGUCGGCCGGCACCCGCCAUUGCCGCCGCGAAGAGUUCGCCUCUGUCAGCCUCGGCGGCGCCCGGGAGAUGCGGCGCGCGGCCCCGCGCCCCCAGCAGAGCAACACGGGAGCGGCGCCCCCGGGGCAACCCCCGCGCCCCCCUGCGCCGUGGGGCGCGCGGACGGCGUCGCUCCCACACGC,AF243438.1/139941-139503 AF243438.1/1679-2117 AF331499.1/229-667,139941-139503 1679-2117,0,438,AF243438.1/139941-139503
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,64083,AF331499.1,1,sp|AF331499.1|AF331499 Gallid herpesvirus 1 telomerase; arg-rich protein (MDV002); and vIL8 (MDV003) genes; complete cds.,0,31,229,667,158.88,CGUGGCGGGUGGAAGGCUCCGCUGUGUCUAACCCUAAUCGGAGGUAUUGAUGGUACUGUCGCCGCGCUCCCUCCGCCCGCUGUUUACUCGCUGACUUUCAGCGGGCUAGGGGAGCCGCCCCAGGGGGCGCCGCGGCGGGGAGGGGGUGGGGCGGACGCGGGAGAAAGGACCGAAAGGGGCUCCACGGCAAACAAAAAAAAACGUCAGCGAGGGGUCCUCUCGCCCCCAUCCGCCCUGGGGUCCUCGCCCGCAGGCCGCGGUCGGCCGGCACCCGCCAUUGCCGCCGCGAAGAGUUCGCCUCUGUCAGCCUCGGCGGCGCCCGGGAGAUGCGGCGCGCGGCCCCGCGCCCCCAGCAGAGCAACACGGGAGCGGCGCCCCCGGGGCAACCCCCGCGCCCCCCUGCGCCGUGGGGCGCGCGGACGGCGUCGCUCCCACACGC,AF243438.1/139941-139503 AF243438.1/1679-2117 AF331499.1/229-667,229-667,0,438,AF331499.1/229-667
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12293,AF221908.1,1,sp|AF221908.1|AF221908 Xenopus laevis telomerase RNA gene; sequence.,0,32,154,584,153.03,AAUGUGGACGGAGGUCUCUGUUUCGCUAACCCUAAUACACUGGCUUCAGGGCGAUGGCUCUUCGCGGCGGUGCCUGUUGUUUUACUUGCUGACUUUCAGCGGGCACGGAGAGCAAGCGUAGACGACGACUAAAAAACGUCAGCUGGGAGACUCCUCCGUUCGCACAGCCCGACCUGCUCCAUUGCCCAAGAGCCCCGGGUUUUCUCUGUGGAAUGUAUCAGGCGCUCCCCGGUCUGUCUGUCUGGGGCCGCGGUCGGCAUCAUCUGCUGUCGCGAAGAGUUCGUCUCUGUUAGCCCUUGGGGGCCCUGGUGCGGAGUGGAGAGUCCGGGUCUGGGGGGUCGGGAGAACAAAAGGGGGCGCGCUGGUGCUCAGGCUCAGUCAUGCUUUCCCUUAGUUGUGGGAUAUGCGUGUUCAGCCAGUCCCCGACAUGU,AF221908.1/154-584,154-584,0,430,AF221908.1/154-584
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12294,AF221910.1,1,sp|AF221910.1|AF221910 Typhlonectes natans telomerase RNA gene; sequence.,0,33,117,554,206.28,UUCCGGAGAGGGGCGUUUUCUUCUUUCUCUAACCCUAAUGUAUUGCUUGGGCAGCAGCUCUCUCGGUAUGCUCGCUGUUUUGCUGGCUAACUUUCAGCGAGCAGAGGGCGAAGUCGAAUUUCGGACAAGGGAGAAAAAAUGUUAGCCGGGGAACGCCCCUUUCCCGAAUGCCCGUGCCGUCCUUCCUCUCCUCUGGGCCCGUUGGCGAUAGCCCCCGGCCUCCCUCGCUCCUUAGGCCGCGGUCAGUCCGGGCCCUUGCUCUGGCAUGAGGUCCAUUGCUGCCGCGAAGAGUUCGUCUCUGUCAGCCUUGAGGUGGCCAGCAUGGAAUUGGCGGGCUUGUGGCGGCGCGCGGGAAAAAGCAAAUGGUGAACUAGGUGCGUGUUGUGGUCGUGUUCCUGAAGCGUGGAAUGUGCGAUCUGUGCGCUAGUUCAUACACAC,AF221910.1/117-554,117-554,0,437,AF221910.1/117-554
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12295,AF221911.1,1,sp|AF221911.1|AF221911 Chelydra serpentina telomerase RNA gene; sequence.,0,34,108,513,225.04,UGCGGCGGCAGGUGGGGGCUCAGUCUUUCUAACCCUAAGCGAAAUGUGACCCCUCCCCGCUGCAGCCGUCCGCUGUUUUACUCGCUGACUUUCAGCGGACGGGGGGAGCGGGUGGAGACGCCAACCAAAAAACGUCAGCGAGGGGCCCUCCCCUCCCACGCCGACCUGGGCCUGUGGUGGGGCCCGCCAGCGAAGUCCCCGCCGCCCCGCCCCGGUGAGGCCGCGGUCAGCCGGCUCGCGCCACUGCUGCCGCGAAGAGUUCGUCUCUGUCAGCCUCGGGGGCGGCCGGGGUGGAAGGGCGGGUCCCGAGCCCGUCGGCCGGGAGAGCAAACGUGAGCGGCAGCCCCUGCGCCACCGCCCUCCCCUAAGCUGUGGGGCCCGCGGUCGGGGCUGCGCUCAGACACGC,AF221911.1/108-513,108-513,0,405,AF221911.1/108-513
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12296,AF221913.1,1,sp|AF221913.1|AF221913 Bufo japonicus telomerase RNA gene; sequence.,0,35,113,520,170.74,UUAGAGGGAUUGGAAGGUUCCGCUUAUGCUAACCCUAAUAUUGGGGGUCUGUUGAAAACCUCUUUAAGAUAUGCGUGUUGUUUUAUUGGCUGACUUUCAGCGCGCAUUGAGAGGAGUUGCUGCCCAGGACUAAAAAAUGUCAGCUGGGAGUCCUUCCUCUCCCUUAUUUCUGCCUCACAACCUGGACUCUUUAUUUAGCGGUGCCCCAUUUGUCGAGGCCGCAGUCAGUCUUGUUCUUAUACGCUGCUGUUGCGAAGAGUUCGUCUCUGUCAGCCUCCGGGGCAACGCCUUGAAUUUGGAGAGCCUGGGAAUGUAACAAGGGGUAGGGAAAAUAACGAGAGCUGAGUUGGCUUCUCCUGUGCUGUUCCUGAGCUGUGGAACUUGCAAUCGCAGUCGGCUCUGACACUU,AF221913.1/113-520,113-520,0,407,AF221913.1/113-520
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12297,AF221914.1,1,sp|AF221914.1|AF221914 Dasyatis sabina telomerase RNA gene; sequence.,0,36,114,589,163.84,CCAGCUGCGGGGGAGACAGUGUCGCUCUCUAACCCUAAUGUGGGGGCAACGCGGGCCCUUUGUUUAAAGUCCCGCUGUCGGGAGCCCUCGCUGUUUUCUUGGCUAACUUUCAGCGAUGGCGAAAGGGCCCAGCAAAGGUUGGGAAGCGUGAUUUAUUGUUGGUGGGCAGAGAGAAAAAAGUUUAAGCCGCGGCCUCCUCCCCGGCGGCCCAGGACCCCCUGUUGCAACGUGCGGAAUGGCGGCCUCGGCCCCCCUGCUGCACGCCCAGCCGUUUAGGCCGCGGUCAGCGCCGGUUUCCACGCCAGUGUGGGGCUUGAUGCUGUCGCGAAGAGUUCGUCUCUGUUAGCCUGGCAGGGUGUGCUACGCAGGGUCGGGGUGCGGAGGGCAGGGAGAUUAAAUAGCUUGACCAGACGCUAUGGCCUGUACUGCAUUUCCCAGAGCUGUGGGACCUGCAAAUCUGCGCUGGUCAUACAUUU,AF221914.1/114-589,114-589,0,475,AF221914.1/114-589
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12298,AF221915.1,1,sp|AF221915.1|AF221915 Rhizoprionodon porosus telomerase RNA gene; sequence.,0,37,123,667,155.79,CAUUGCUGCGGGGUGGAGGCGUUUUUAACUAACCCUAAUGCAGAGUAAGUGGCUGGGCCUUCCUCACACUGCCUCCCGCUGCGUGAAACCUCGCUGUUUUCUUGGCUAACUUUCAGCGAGGUGAGGCAAGGCGGCAAAAAAAAGUUGGGAGCAGCAACGGCAAGCAAAAAAAAAGUUCCAGCCGAGGCCUCCUCACCACGCGGCCUGGGUCUGAGGGUAACAUGGCCCUGCGGGAGAGAGCCAACACGGGGGGGCCCCGGUCCGGCUAACAGGGCAGGAGGUCGGCCCCAAUUGCCUCAGGCCCAGCCACUCCGGGCCGCGAUCAGCCCGGGCUUUCCCUACUUUGGGGCCCAAUGCUGUCGCGAAGAGUUCGGCUCUGUCAGCCCGGCUGGGUCCGGGUGGGGGCCGGCACAGAGGGACACACCGGGCCGGGGCGCCGAGGAUAGCUACCGCCCGCAGGGAUAGUAAAUAUCCGUGACCAGUGGCCUCGGUGGCUGCGUCUCCCGGAGCAAUGGGACCCGCAAGGCUGCCCUGGUCAUACACGC,AF221915.1/123-667,123-667,0,544,AF221915.1/123-667
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12299,AF221924.1,1,sp|AF221924.1|AF221924 Anodorhynchus hyacinthinus telomerase RNA gene; sequence.,0,38,106,538,208.26,GCGUGGCGGAUGGGGAGGCUCCAGUCUCACUAACCCUAAUGGCUGCCGCCGUGCUCCCCGCACCCGUCCGCUGUUUUAUUCGCUGACUUUCAGCGGACGGGGGGAGCCGCCUGGGGGGGAAGGGGUUUGCAAUCAAAAAACGUCAGCGACGGGUCUCCCCAGCCCAGCCCGCCCUGGGGUCUCCGUCCCCCCACGCAGCCGGGGGCCUGCCGCGGAGGCUCCCUCCGCCGCACUUCACGGAGGCCGCGGUCGGCCGGUGUCCGCCACUGCCGCCGCGAAGAGUUCGUCUCUGUCAGCCUCGGCGGCGGUGGGGAGCGAGAGGGCUCGUCCCCGCGCCGGGGACCCCAGCAGAGCAAAACGGAGCGGCGUCCUCGGCACAGCCGCCGCGCUUCCCUCAACCGUGGGAUGCGCGGACGGCGCCGCUUCGACACCC,AF221924.1/106-538,106-538,0,432,AF221924.1/106-538
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12300,AF221926.1,1,sp|AF221926.1|AF221926 Ceratophrys ornata telomerase RNA gene; sequence.,0,39,103,507,157.32,ACAGUGGGAAUAGGAGGGAGUCUAUAUUUCUAACCCUAAUAUACCCGGUUCAGGGCUCUUAUGUGGCGCUCGUUGUUUUGCCGGUUGCCUUUCAGCGGGCGAAAGAGCUCAGAGAAGCGAGGACCAAAAAACGGCAGCCGCGGGCCCUCCUGUUCCCACCAUCCCAGCUUUUCCACACUGCGCCUGGGUUCUCACUCAAGUGUUCGGCAGCUUCCACUUACGAGGCCGCGGUCUACCGCUGUCACUGGUAGUCGCGAAGAGUUCGUCUCUGUCAGCCUUGGGAGCCGCGGACGGAGUAUGAGGUCCAGUAAUGAGAGCAGGGAAGAGUAAAGCGAGCCGCGCUACUUGUCCUAUCUGCCGCUCCUAAGCUGUGGGGCGUGUAGGGUACACAAGGCUCCGACAUUC,AF221926.1/103-507,103-507,0,404,AF221926.1/103-507
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12301,AF221927.1,1,sp|AF221927.1|AF221927 Herpele squalostoma telomerase RNA gene; sequence.,0,40,116,556,210.41,CUCUGGAGCGGGGCGAUUUCUCUUCCUUCUAACCCUAAUGCGGUGCUUAGGCGACAGUUCUCCGGGUGCGCUCGCUGUUUUUCUGGCUAACUUUCAGCGAGCGGAGAGAGCGAAGCCGUGGUUUACGACGAUAGAGGAGAAAAAAUGUUAGCUGGGGAACGUCCCUUUCCCGAGAGCCCGCGCCAUCCUCUUCCUCGGGCCCAUUGGCGAUAGCCCCCGGCCUCCCUCGCUCACCAGGCCGCGGUCAGCCCGGGCCCUGGCUCUGCUAGGGCGUCCAAUGCUGCCGCGAAGAGUUCGUCUCUGAUUGCCUUGAGGUAGCCGGGCUCGAAUAGGUGGGCUCGCGGCGAUGCGCAGGAAAGAGCAAAACAGUGAACUGGGCGUGUGCUGGGGUCGCGUCCCUGAAGUGUGGGAUGUGCGAUCUGUCCGCUUGUUCAGACAUUG,AF221927.1/116-556,116-556,0,440,AF221927.1/116-556
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12302,AF221933.1,1,sp|AF221933.1|AF221933 Mustelus canis telomerase RNA gene; sequence.,0,41,122,679,169.90,CACAUUGCUGCGGGGUGGAGGCGAUUUUAACUAACCCUAAUGCAGAGUAAGUGGCUGGGCCUUCCUCACACUGCCUCCCGCUGCGCGAAACCUCGCUGUUUUCUUGGCUAACUUUCAGCGAGGUGAGGAGAGGCGGCAAAAAAAAAAGGUUGGGAGCAGCAGCGGCAAACAAAAAAAAAAGUUCCAGCCGAGGCCUCCUCACCCCCGCGGCCUGGGUCUGAGGGUAACACGGCCCUGCGGGAGAGAGGCAACACGGGGGCCCCCGGUCCGGCGAACAGGGCAGGAGGUCGGUCCCAAUCGCCUCACAGGCCCAGCCACUCCGGGCCGCGGUCAGCCCGGGGCUUUCCCCCCCACCAUGGGGGCCCAAUGCUGCCGCGAAGAGUUCGGCUCUGUCAGCCCGGCUGGGCCAGGGUGGGGGCCGGCACAGAGGGACACACCGGGCCGGGGCGCCGGGGAUAGCUACCGCCCGCAGGGAUAGCAAAUAUCCGUGACCAGUGGUCUCGGUGGCUGCGUCUCCCGGAGCAAUGGGACCCGCAAGGCUGCCCUGGUCAUACACAU,AF221933.1/122-679,122-679,0,557,AF221933.1/122-679
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12303,AF221934.1,1,sp|AF221934.1|AF221934 Dermophis mexicanus telomerase RNA gene; sequence.,0,42,124,565,229.38,CUCCGGAGAGGGGCGGUUUCUCUGUCUUCUAACCCUAAUGCGGUGCUUCGGCAGAAGCUCUCCACUGCGUACGCUCACUGUUUUUCUAGCUAACUUUCAGUGAGCAGGGAGAGCGAAGUCCAGUUUCACGACAACGGAGAAAAAAUGUUAGCUGGGGAACGUCCCUUUCCCGAGAGCCCGCGCCGUCCUUUUUCUUCCUCGGGCCCGUUGGCAUAGCCCCUGGCCUCCUCGCUCUAUAGGCCGCGGUCAGCUCGGGCCCCAGCUCCGGCAGGGGUUCCACUGCUGCCGCGAAGAGUUCGCCUCUGUCAGCCUUGAGGUGGCCGGGAUAGAAUAGGCGGGCUCGCGGCAGCGCGCGGGAAAGAGCAAAUGGUGAACUGGGUGCCUGUUGGGGUCGCGUCCCUGAAGAGUGGGAAGUGCGAUCUGUGUUCCUGUUCAGACACAC,AF221934.1/124-565,124-565,0,441,AF221934.1/124-565
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12304,AF221935.1,1,sp|AF221935.1|AF221935 Rhinoptera bonasus telomerase RNA gene; sequence.,0,43,114,602,149.93,CCAGCUGCGGGGAGAAAGUGUCGUUCUCUAACCCUAAUGCGAGGGCAAUGCGGGCCCUUUGUUUAAAGUCCCGUUGUCGCGCGAAGCGGGAGCCCUCGCUGUUUUCUUGGCUAACUUUCAGCGAUGGUGAAAGGGCCUAGCAAAGGUUGGGAAGCGUGAUUUAUUGUUGGUGGGCAGAGAGAAAAAAGUUUCAGCCGCGGCCUCCUCCCCGGCGGCCCAGGACCCCCUGUUGCAACGUGCGAAAUGGCGGCCUCGGCCCCCACCUUUGCUCGCAUGCCCAGCCGAGUAGGCCGCGGUCAGCGCCGGCUUCCACGCCAGUGUGGGGCUUGAUGCUGUCGCGAAGAGUUCGUCUCUGUCAGCCUGGCAGGGGGUGCUACGCAGGGUCGGGGUACGGGGGACAGGGAGAUUAAAUAGCUUGACCAGACGCUAUAACCUGUACUGCAUCUCCCAGAGCUGUGGGACCUGCAAAUCUGCGCUGGUCAUACAUUU,AF221935.1/114-602,114-602,0,488,AF221935.1/114-602
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12305,AF221938.1,1,sp|AF221938.1|AF221938 Gallus gallus telomerase RNA gene; sequence.,0,44,107,569,183.55,GCGUGGCGGGUGGAAGGCUCCGCUGUGCCUAACCCUAAUCGGGGGAAUUGAUGGUGCUGUCGCCGCGCUCCCUCCGCCCGCCCGCUGUUUUACUCGCUGACUUUCAGCGGGCGAGAGGAGCCGCCCCGGGGGGGAGGCGGGCGGCGGGAGGGGGCCGGGGCGCCGCGGCGGUGGGGGUCGGGGGGGGGAGAGAAAGGGCCGAAAGGGGCUCCGCGGCCAAAAAAACGUCAGCGAGGGGUCCGCUCGCCCCGAUCCGCCCUGGGGUCCCCGCUCGCGUGGCCGCGGUCGGCCGGCACCCGCCAUUGCCGCCGCGAAGAGUUCGCCUCUGUCAGCCUCGGCGGCGCGCGGGAGGUGCGGCGCGCGGCCCCGCGCCCCCAGCAGAGCAAACGGGAGCGGCGCCCCCGGGGUAACCCCCGCGCUCCCCUGCGCCGUGGGGCGCGCGGACGGCGUCGCUCCCACACGC,AF221938.1/107-569,107-569,0,462,AF221938.1/107-569
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,12306,AF221940.1,1,sp|AF221940.1|AF221940 Pyxicephalus adspersus telomerase RNA gene; sequence.,0,45,103,499,178.30,CCAGCGGUAAUAGGAGAGUUCUAUCCUUCUAACCCUAAUGCACAGACCCCUCGCUGCUCUUCAUGCUCGUUGUUUUUCUCGCUGACUUUCAGCGGGCGAAAGAGCAAUGGAAGCUCAGGACUAAAAAACGUCAGCCGUAGGCUUUCCUAUAGCCGCAGGCCUGCCUGUCAGUGUGCGCGGCCUCUGCUCGCAAUGUCCGCAGCGCCUUCCUAUGAGGCCGCAGUCUGCCAAUACCCCGGGCAGCCGCGAAGAGCUCGUCUCUGUCAGCCUUUGGCGCUGCGGCGGAGUGGGGGAGGCCGCUGAUGGCAGCUGAGAAUAAAGCGAGCCCAGCUGCCCCGCUCUGUUCCACUGCCCCUGAGCUGUGGGGUUGGUGAAUUGCAGCAUGGCUCCGACAACU,AF221940.1/103-499,103-499,0,396,AF221940.1/103-499
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8595,AC078802.14,1,sp|AC078802.14|AC078802 Homo sapiens 3 BAC RP11-816J6 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,46,35583,35146,400.66,UGGGCCUGGGAGGGGUGGUGGCCAUUUUUUGUCUAACCCUAACUGAGAAGGGCGUAGGCGCCGUGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUGCCGCCUUCCACCGUUCAUUCUAGAGCAAACAAAAAAUGUCAGCUGCUGGCCCGUUCGCCCCUCCCGGGGACCUGCGGCGGGUCGCCUGCCCAGCCCCCGAACCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCACUGCCACCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCUCUCGGGGGCGAGGGCGAGGUUCAGGCCUUUCAGGCCGCAGGAAGAGGAACGGAGCGAGUCCCCGCGCGCGGCGCGAUUCCCUGAGCUGUGGGACGUGCACCCAGGACUCGGCUCACACAUGC,AF221907.1/111-548 AC078802.14/35583-35146 U86046.1/108-545 U85256.1/14-451,35583-35146,0,437,AC078802.14/35583-35146
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz,1758,AF047386.1,1,sp|AF047386.1|AF047386 Homo sapiens telomerase RNA (TR) gene; promoter and complete sequence.,0,47,812,1248,391.87,UGGGCCUGGGAGGGGUGGUGGCCAUUUUUUGUCUAACCCUAACUGAGAAGGGCGUAGGCGCCGUGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUGCCGCCUUCCACCGUUCAUUCUAGAGCAAACAAAAAAUGUCAGCUGCUGGCCCGUUCGCCCCUCCCGGGGACCUGCGGCGGGUCGCCUGCCCAGCCCCCGAACCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCUACUGCCACCGCGAAGAGUUGGCUCUGUCAGCCGCGGGUCUCUCGGGGGCGAGGGCGAGGUUCAGGCCUUUCAGGCCGCAGGAAGAGGAACGGAGCGAGUCCCCGCGCGCGGCGCGAUUCCCUGAGCUGUGGGACGUGCACCCAGGACUCGGCUCACACAUGC,AF047386.1/812-1248,812-1248,0,436,AF047386.1/812-1248
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz,9261,AF221907.1,1,sp|AF221907.1|AF221907 Homo sapiens telomerase RNA gene; sequence.,0,48,111,548,400.66,UGGGCCUGGGAGGGGUGGUGGCCAUUUUUUGUCUAACCCUAACUGAGAAGGGCGUAGGCGCCGUGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUGCCGCCUUCCACCGUUCAUUCUAGAGCAAACAAAAAAUGUCAGCUGCUGGCCCGUUCGCCCCUCCCGGGGACCUGCGGCGGGUCGCCUGCCCAGCCCCCGAACCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCACUGCCACCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCUCUCGGGGGCGAGGGCGAGGUUCAGGCCUUUCAGGCCGCAGGAAGAGGAACGGAGCGAGUCCCCGCGCGCGGCGCGAUUCCCUGAGCUGUGGGACGUGCACCCAGGACUCGGCUCACACAUGC,AF221907.1/111-548 AC078802.14/35583-35146 U86046.1/108-545 U85256.1/14-451,111-548,0,437,AF221907.1/111-548
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz,9847,U85256.1,1,sp|U85256.1|HSU85256 Human telomerase RNA; partial sequence.,0,49,14,451,400.66,UGGGCCUGGGAGGGGUGGUGGCCAUUUUUUGUCUAACCCUAACUGAGAAGGGCGUAGGCGCCGUGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUGCCGCCUUCCACCGUUCAUUCUAGAGCAAACAAAAAAUGUCAGCUGCUGGCCCGUUCGCCCCUCCCGGGGACCUGCGGCGGGUCGCCUGCCCAGCCCCCGAACCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCACUGCCACCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCUCUCGGGGGCGAGGGCGAGGUUCAGGCCUUUCAGGCCGCAGGAAGAGGAACGGAGCGAGUCCCCGCGCGCGGCGCGAUUCCCUGAGCUGUGGGACGUGCACCCAGGACUCGGCUCACACAUGC,AF221907.1/111-548 AC078802.14/35583-35146 U86046.1/108-545 U85256.1/14-451,14-451,0,437,U85256.1/14-451
./cmzasha --no-stderr --filter 560 40 Rfam/cm/RF00024.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00024_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00024.cm (global),/projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz,9881,U86046.1,1,sp|U86046.1|HSU86046 Human telomerase RNA (hTR) gene sequence.,0,50,108,545,400.66,UGGGCCUGGGAGGGGUGGUGGCCAUUUUUUGUCUAACCCUAACUGAGAAGGGCGUAGGCGCCGUGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUGCCGCCUUCCACCGUUCAUUCUAGAGCAAACAAAAAAUGUCAGCUGCUGGCCCGUUCGCCCCUCCCGGGGACCUGCGGCGGGUCGCCUGCCCAGCCCCCGAACCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCACUGCCACCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCUCUCGGGGGCGAGGGCGAGGUUCAGGCCUUUCAGGCCGCAGGAAGAGGAACGGAGCGAGUCCCCGCGCGCGGCGCGAUUCCCUGAGCUGUGGGACGUGCACCCAGGACUCGGCUCACACAUGC,AF221907.1/111-548 AC078802.14/35583-35146 U86046.1/108-545 U85256.1/14-451,108-545,0,437,U86046.1/108-545



THINGS IN Rfam THAT WEREN'T FOUND:


# hits found that weren't in Rfam: 0 (totally new = 0, overlaps hit in Rfam = 0, overlap hits with more than 10 nucs = 0,  total # hits with 0 overlap with Rfam (ignoring sequence matching) = 0)
# Rfam hits not found: 0 (no overlap of >= 10 nucs: 0)
# Rfam seqs not found: 0 (no overlap of >= 10 nucs: too tricky to calculate)