params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43618,L41730.1,1,sp|L41730.1|CECSCR Caenorhabditis elegans ceY small cytoplasmic RNA gene.,0,0,373,476,27.91,GCUCGGUCCGAGUUUCAUGGUCUCCAAUGUGUGUGUGUGUGUGUUUUCUUUAGGAACCUCGGUUCCAACCUCAUCUUGACCUUGAAACUACUUUGACCGCUCCU,L41730.1/373-476 U58750.1/35336-35439,373-476,0,103,L41730.1/373-476
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44221,U58750.1,1,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1; complete sequence.,0,1,35336,35439,27.91,GCUCGGUCCGAGUUUCAUGGUCUCCAAUGUGUGUGUGUGUGUGUUUUCUUUAGGAACCUCGGUUCCAACCUCAUCUUGACCUUGAAACUACUUUGACCGCUCCU,L41730.1/373-476 U58750.1/35336-35439,35336-35439,0,103,U58750.1/35336-35439
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,2599,AB054536.1,1,sp|AB054536.1|AB054536 Pan troglodytes LTB; TNF alpha; LTA; IKBL; ATP6G; BAT1; Patr-MIC and Patr-B genes; complete cds.,0,2,92601,92697,46.47,GGCUGGUCUGAGUGCAGUGUUUACAGCUAAUUGAUCACAACCAGUUAUAGAUGUCUUUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU,AB100082.1/92601-92697 AB054536.1/92601-92697,92601-92697,0,96,AB054536.1/92601-92697
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,5706,AB100082.1,1,sp|AB100082.1|AB100082 Pan troglodytes DNA; major histocompatibility complex class I region; section 1/6.,0,3,92601,92697,46.47,GGCUGGUCUGAGUGCAGUGUUUACAGCUAAUUGAUCACAACCAGUUAUAGAUGUCUUUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU,AB100082.1/92601-92697 AB054536.1/92601-92697,92601-92697,0,96,AB100082.1/92601-92697
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,5708,AB100084.1,1,sp|AB100084.1|AB100084 Pan troglodytes DNA; major histocompatibility complex class I region; section 3/6.,0,4,179116,179224,56.58,GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGACUAGUCUU,AB100084.1/179116-179224,179116-179224,0,108,AB100084.1/179116-179224
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,5711,AB100087.1,1,sp|AB100087.1|AB100087 Pan troglodytes DNA; major histocompatibility complex class I region; section 6/6.,1,5,210616,210517,69.21,GGCUGGUCAGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCUUUUUUCCUUCUCCGCUCCCACUGCUUCACUUGACUAGCCUU,AB100087.1/210616-210517,210616-210517,0,99,AB100087.1/210616-210517
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7095,AC091754.4,1,sp|AC091754.4|AC091754 Papio anubis clone RP41-384C24; complete sequence.,1,6,85527,85428,38.01,AACUGGCCCGAGUGCAGUGGUGGUUACACUUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCCUCUCCACUUCCACUGCUUCACUGUAAGAGCCUA,AC091754.4/85527-85428,85527-85428,0,99,AC091754.4/85527-85428
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7128,AC093135.2,1,sp|AC093135.2|AC093135 Pan troglodytes clone RP43-100O17; complete sequence.,1,7,10087,9988,45.60,GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA,AC004980.5/9646-9745 AC005088.3/128945-129044 AC006480.3/63240-63141 AF030453.1/97393-97492 AC142303.1/110627-110528 AC091390.1/52337-52238 AC093135.2/10087-9988,10087-9988,0,99,AC093135.2/10087-9988
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7176,AC099742.2,1,sp|AC099742.2|AC099742 Papio anubis clone RP41-167P22; complete sequence.,0,8,102210,102305,43.65,GGCUGGCCCAAGUGCAGUGCUGUUUACAGCUAAUUGAUUACAACCAGUUACAGAUUUCUUCCUUCUCCAUUCCCACUACUUCCCUUGAUUAGUCUU,AC099742.2/102210-102305,102210-102305,0,95,AC099742.2/102210-102305
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7202,AC120838.9,1,sp|AC120838.9|AC120838 Pan troglodytes clone ch251-239a19; complete sequence.,1,9,99869,99767,48.48,GGCUGGUCUGAGUGCAGUGGGGUGUACAAGGAAUUGAUUACAACCAGUUACAGGUUUCUUUGCUCCUUUUCCAUUUCCACUGCUGCUUCACUUGACUAGCCUU,AC120838.9/99869-99767,99869-99767,0,102,AC120838.9/99869-99767
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7256,AC128639.13,1,sp|AC128639.13|AC128639 Papio anubis clone rp41-2d18; complete sequence.,1,10,157491,157376,35.13,GGCUGGUCCAAAGGUAGUUAGUUGAGUUAUCUCAGUUGGUUGUUCAUAGGCAGUAACAGAUCAAACUCCUUAUUCUUCUCUGUCCCCUCUUCUCAAUACUGCACUUGACUAGUCUA,AC128639.13/157491-157376,157491-157376,0,115,AC128639.13/157491-157376
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7290,AC140949.1,1,sp|AC140949.1|AC140949 Pan troglodytes BAC clone RP43-168N2 from 7; complete sequence.,1,11,15072,14961,63.74,GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUAUUCUUCCCCCCGCUUCUCACUGCUGCACUUGACUAGUCUG,AC140949.1/15072-14961,15072-14961,0,111,AC140949.1/15072-14961
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7315,AC142303.1,1,sp|AC142303.1|AC142303 Pan troglodytes chromosome 7 clone RP43-129L21; complete sequence.,1,12,110627,110528,45.60,GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA,AC004980.5/9646-9745 AC005088.3/128945-129044 AC006480.3/63240-63141 AF030453.1/97393-97492 AC142303.1/110627-110528 AC091390.1/52337-52238 AC093135.2/10087-9988,110627-110528,0,99,AC142303.1/110627-110528
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7339,AC142329.1,1,sp|AC142329.1|AC142329 Pan troglodytes chromosome UNK clone RP43-25D8; complete sequence.,0,13,23506,23605,65.85,GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUAAUCACAACCAUUUACAGAUUUAGUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU,AC142329.1/23506-23605,168852-168753 23506-23605,0,99,AC142329.1/23506-23605
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7339,AC142329.1,1,sp|AC142329.1|AC142329 Pan troglodytes chromosome UNK clone RP43-25D8; complete sequence.,1,14,168852,168753,65.69,GGCUGGCCUGAGUGCAGUGGUGUUUACAACGAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCCU,AC142329.1/168852-168753,168852-168753 23506-23605,0,99,AC142329.1/168852-168753
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7372,AC144428.1,1,sp|AC144428.1|AC144428 Pan troglodytes chromosome 7 clone RP43-2C19; complete sequence.,1,15,155286,155187,51.52,GGUUAGCCCGAGUGCUAUAGUAUUUACAAUGAAUUGAUCACAACCAGUUACAGAUUUCUUUAUCACAUCUUCACUCCCACUGCUUCACUUGACUAGCCUU,AC144428.1/155286-155187,155286-155187,0,99,AC144428.1/155286-155187
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,41220,U94704.1,1,sp|U94704.1|GSU94704 Galago senegalensis Y5 small cytoplasmic RNA gene; partial sequence.,0,16,1,75,35.31,AGUUGGUCCGAAGGUUGUGGGUUAUCGUUAUUGAUUUAACAUUGUCUCCCCCCACACCCCCUCUUGACUAGCUUU,U94704.1/1-75,1-75,0,74,U94704.1/1-75
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,41221,U94705.1,1,sp|U94705.1|GSU94705 Galago senegalensis Y5 small cytoplasmic RNA gene; complete sequence.,0,17,86,160,34.05,AGUUGGUCCGAAGGUUGUGGGUUAUCGUUAUUGAUUUAAUAUUGUCUCCCCCCACACCCCCUCUUGACUAGCUUU,U94705.1/86-160,86-160,0,74,U94705.1/86-160
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6760,AC124787.5,1,sp|AC124787.5|AC124787 Mus musculus; clone RP24-395J18; complete sequence.,0,18,105946,106055,37.00,GGCUGGUACAAAGGGAGUGAGUUUUCUCAAUUGCUUGUUCACAGUCAGCUAUAGAUCGAACUGCUGGUCUGUGCUUUCCCCUCUUCUCACUACUGCACUUGACUACAGAU,AC124787.5/105946-106055,105946-106055,0,109,AC124787.5/105946-106055
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,7305,AC130205.3,1,sp|AC130205.3|AC130205 Mus musculus chromosome 1 clone RP24-430C1; complete sequence.,1,19,150414,150305,28.06,GGCUUGUCUAAAGAUAGUGAGUUAUAUCACCUGAUUGUUCACAGUCACUCACAGAUUGAAUUCCUAUUCUAUACAUUCCCUCCUUCUCACUACUCCAGUUGAUUAGAGAU,AC130205.3/150414-150305,150414-150305,0,109,AC130205.3/150414-150305
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24162,AL606480.11,1,sp|AL606480.11|AL606480 Mouse DNA sequence from clone RP23-112C19 on chromosome 11,0,20,12698,12811,29.02,GGUUGAUCUGAAGAUAGUGAGUUAUCUCAACUGAUUGUUCAAAGUCAGUUCCAGAUUGCAUCCCUAUUCUACACUCCACACCCCCCUUUCCUGUUACUGUACUUAACCAGCCGU,AL606480.11/12698-12811,12698-12811,0,113,AL606480.11/12698-12811
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24838,AL669834.10,1,sp|AL669834.10|AL669834 Mouse DNA sequence from clone RP23-114O4 on chromosome 4,0,21,21203,21305,35.92,GGCUGGGCUGAGUACAGUGGCUGUUUCCAGCUAAUUGUUCACAACUAAUUACAGAUUUUUUUUUGUUCCUUCUCCAUUCCCACUGUUUCACCAGAACAGGUUG,AL669834.10/21203-21305,21203-21305,0,102,AL669834.10/21203-21305
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24939,AL670035.15,1,sp|AL670035.15|AL670035 Mouse DNA sequence from clone RP23-295C20 on chromosome 4,0,22,96985,97080,46.46,AGCUGAUCCAAAGGUAGUGAGUUAUCUCAAUGGAUGGUUCACAAUCAGUUACAGAUUAAACUUCCUUCCUCCUCACUGCUGCACUUGACUAGAGAU,AL670035.15/96985-97080,96985-97080,0,95,AL670035.15/96985-97080
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25009,AL671140.12,1,sp|AL671140.12|AL671140 Mouse DNA sequence from clone RP23-80N18 on chromosome 4,0,23,20804,20915,39.98,AGCUGGUCCUAAGGUAGUGCGUUGUCUCAAUUGAUUGCUCAGUCAGUUACACAUUGAACUCCUUCCUACUCUAUGCUUUCCCUCCUUCUCACUACUGCGCUUGACUAGAGCU,AL671140.12/20804-20915,20804-20915,0,111,AL671140.12/20804-20915
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,54168,U34825.1,1,sp|U34825.1|MM34825 Mus musculus Y1 scRNA (mY1) gene.,0,24,325,434,75.45,GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUGUUCUACACUUUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU,U34825.1/325-434 U34828.1/1-110,325-434,0,109,U34825.1/325-434
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,54169,U34826.1,1,sp|U34826.1|MM34826 Mus musculus Y3 scRNA (mY3) gene.,0,25,282,381,73.46,GGUUGGUCCGAGAGUAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU,U34827.1/1-100 U34826.1/282-381,282-381,0,99,U34826.1/282-381
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,54170,U34827.1,1,sp|U34827.1|MM34827 Mus musculus Y3 scRNA (mY3) RNA; complete sequence.,0,26,1,100,73.46,GGUUGGUCCGAGAGUAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU,U34827.1/1-100 U34826.1/282-381,1-100,0,99,U34827.1/1-100
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,54171,U34828.1,1,sp|U34828.1|MM34828 Mus musculus Y1 scRNA (mY1) RNA; complete sequence.,0,27,1,110,75.45,GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUGUUCUACACUUUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU,U34825.1/325-434 U34828.1/1-110,1-110,0,109,U34828.1/1-110
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,68868,X13624.1,1,sp|X13624.1|MMROMY1P Mouse my1 pseudogene for small cytoplasmic Ro RNA,0,28,135,244,57.22,GGCUGGCCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUGUUUUACGCUUUGCCCCCUCUCACUCCUGCACUUGAACUCGUCUA,X13624.1/135-244,135-244,0,109,X13624.1/135-244
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21713,X69719.1,1,sp|X69719.1|RNY1A R.norvegicus gene for Y1 small cytoplasmic RNA,0,29,5,114,50.76,GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUGAACUCCUGUUCUAUACUUUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU,L07871.1/5-114 X69719.1/5-114,5-114,0,109,X69719.1/5-114
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21714,L07871.1,1,sp|L07871.1|RNY1RNAX Rat rinucleoprotein (Y1) gene.,0,30,5,114,50.76,GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUGAACUCCUGUUCUAUACUUUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU,L07871.1/5-114 X69719.1/5-114,5-114,0,109,L07871.1/5-114
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,43762,L27530.1,1,sp|L27530.1|IIY3A Iguana small cytoplasmic RNA (Y3).,0,31,1,99,69.60,GGCUGGUCCGAUUGCAGUGGUACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCUUUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCU,L27530.1/1-99,1-99,0,98,L27530.1/1-99
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,43763,L27532.1,1,sp|L27532.1|IIY3C Iguana small cytoplasmic RNA (Y3) gene.,0,32,94,193,74.04,GGCUGGUCCGAUUGCAGUGGUACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCUUUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCUU,L27532.1/94-193,94-193,0,99,L27532.1/94-193
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,43764,L27534.1,1,sp|L27534.1|IIY4A Iguana small cytoplasmic RNA (Y4) gene.,0,33,95,190,69.91,GGCUGGUCCGAAAGUAGUGGGUUAUCACAGAAAUUAUUACAGUUAGUUUCACUAACCUUUCUAAGUUCCACCCCACUGCUAACCUUGACUGGUCUU,L27536.1/95-190 L27534.1/95-190 L27537.1/1-96,95-190,0,95,L27534.1/95-190
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,43765,L27536.1,1,sp|L27536.1|IIY4C Iguana small cytoplasmic RNA (Y4) gene.,0,34,95,190,69.91,GGCUGGUCCGAAAGUAGUGGGUUAUCACAGAAAUUAUUACAGUUAGUUUCACUAACCUUUCUAAGUUCCACCCCACUGCUAACCUUGACUGGUCUU,L27536.1/95-190 L27534.1/95-190 L27537.1/1-96,95-190,0,95,L27536.1/95-190
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,43766,L27537.1,1,sp|L27537.1|IIY4D Iguana small cytoplasmic RNA (Y4).,0,35,1,96,69.91,GGCUGGUCCGAAAGUAGUGGGUUAUCACAGAAAUUAUUACAGUUAGUUUCACUAACCUUUCUAAGUUCCACCCCACUGCUAACCUUGACUGGUCUU,L27536.1/95-190 L27534.1/95-190 L27537.1/1-96,1-96,0,95,L27537.1/1-96
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,51910,L15431.1,1,sp|L15431.1|XLSCRNAY3 Xenopus laevis (clone pB1) small cytoplasmic RNA (Y3) gene.,0,36,36,134,76.39,GGCUGGUCCGAAGGCAGUGGUUGCCACCAUUAAUUGAUUACAGACAGUUACAGACUUCUUUGUUCUUCUCCCCUCCCACUGCUUCCCUUGACUAGCCUU,L15431.1/36-134,36-134,0,98,L15431.1/36-134
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,51911,L15432.1,1,sp|L15432.1|XLSCRNAY4 Xenopus laevis (clone pB2) small cytoplasmic RNA (xY4) gene.,0,37,36,124,47.34,GGUUGGUCCGAAAGUUGUGGGUUAUCCAAAUCAUUCAGUUAGUAUCACUAACCUUCUAUUUCACCCCACUGCUGACCUUGACUGGCCAA,L15432.1/36-124,36-124,0,88,L15432.1/36-124
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,20,AB000878.1,1,sp|AB000878.1|AB000878 Homo sapiens genomic DNA for centromeric end of MHC class I region on chromosome 6; cosmid clone: TY2A9.,0,38,14612,14711,59.37,GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGUUUUUGUUUCAUCUUCACUCCCACUGUUUCACUUGACUAGCCUU,AB000878.1/14612-14711 AB000882.1/67188-67287 AL663061.8/4461-4362 AC006046.1/40568-40667 AP000506.1/47207-47306 AL662866.7/78597-78498 BX001040.14/26222-26123,14612-14711,0,99,AB000878.1/14612-14711
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,23,AB000882.1,1,sp|AB000882.1|AB000882 Homo sapiens genomic DNA for centromeric end of MHC class I region on chromosome 6.,0,39,67188,67287,59.37,GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGUUUUUGUUUCAUCUUCACUCCCACUGUUUCACUUGACUAGCCUU,AB000878.1/14612-14711 AB000882.1/67188-67287 AL663061.8/4461-4362 AC006046.1/40568-40667 AP000506.1/47207-47306 AL662866.7/78597-78498 BX001040.14/26222-26123,67188-67287,0,99,AB000882.1/67188-67287
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,2352,AB023051.1,1,sp|AB023051.1|AB023051 Homo sapiens genomic DNA; chromosome 6p21.3; HLA class I region; clone:876L4.,0,40,68790,68898,52.53,GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU,AC006165.1/22709-22817 AL845353.7/119651-119543 AL662848.6/44590-44482 BX248307.7/38675-38567 AB088101.1/9930-10038 AB023051.1/68790-68898 AP000512.1/105775-105883 AL662797.7/59499-59391,68790-68898,0,108,AB023051.1/68790-68898
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,2359,AB023058.1,1,sp|AB023058.1|AB023058 Homo sapiens genomic DNA; chromosome 6p21.3; HLA class I region; clone:950A3.,1,41,74394,74295,68.06,GGCUGGUCAGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCUUUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU,AC004170.1/11802-11703 AL669813.6/78419-78518 AL645939.6/47483-47582 AB023058.1/74394-74295 AP000521.1/89762-89663 BX005428.7/65412-65511 AL022723.4/90196-90097,74394-74295,0,99,AB023058.1/74394-74295
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,2766,AB026898.1,1,sp|AB026898.1|AB026898 Homo sapiens DNA; DLEC1 to ORCTL4 gene region; section 1/2 (DLEC1; ORCTL3; ORCTL4 genes; complete cds).,1,42,73128,73028,30.80,GGCUGGUCCAGAGGUAGUGAGUUAUCUUGAUUGUUCAGUUACAGAUCAAACUCCAUGUUCUACUCUUUACCCCCUUCUUACUUCUACACUUGACUAGUCAA,AP000498.1/40476-40376 AB026898.1/73128-73028 AP006309.1/105874-105774 AC093116.2/174391-174491,73128-73028,0,100,AB026898.1/73128-73028
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,4334,AB043547.1,1,sp|AB043547.1|AB043547 Homo sapiens gene for SMAD4; partial cds.,1,43,48716,48606,44.05,UACUGGUCCAAAGGUAAUGAUUAACCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUCAGCUCCUUGUUCUACUCUUUACCCCCUUCUCACUAUUGUGCUUGACUAGUCAA,AC087687.4/79941-79831 AC091551.14/7464-7354 AB043547.1/48716-48606,48716-48606,0,110,AB043547.1/48716-48606
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,5908,AB063285.1,1,sp|AB063285.1|AB063285 Homo sapiens HLCS gene for holocarboxylase synthetase; complete cds.,0,44,8335,8445,52.65,GGCUAGUCUGAAGGUAGCAAGUUAUCUCAAUUGAUUGUUCAUGGUCAGUUACAGAUUGAACUCUUUGUUUUAUUCUUUUCCCCCUUCUCACUACUGCAUUUGACUAAUCAU,AP000704.2/42774-42664 AP000008.1/36047-35937 AP001727.1/205579-205469 AB063285.1/8335-8445 AP001435.2/3239-3129 AP000149.1/36047-35937,8335-8445,0,110,AB063285.1/8335-8445
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,8359,AB088101.1,1,sp|AB088101.1|AB088101 Homo sapiens PRG1; FLOT1 genes for immediate early response 3; flotillin 1; complete cds.,0,45,9930,10038,52.53,GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU,AC006165.1/22709-22817 AL845353.7/119651-119543 AL662848.6/44590-44482 BX248307.7/38675-38567 AB088101.1/9930-10038 AB023051.1/68790-68898 AP000512.1/105775-105883 AL662797.7/59499-59391,9930-10038,0,108,AB088101.1/9930-10038
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9462,AC002407.1,1,sp|AC002407.1|AC002407 Human Chromosome X; complete sequence.,1,46,28932,28822,43.70,UGCUGGCCCUAAGGUAGUGAGUUACCUCAAUUGCUUGUUCACCAUCAGUUACAGGUCAAACUCCUUGUUCUACUCUUUCCACCCUUCUCACUACUGCACUGGACUAGGAAA,AC002407.1/28932-28822,28932-28822,0,110,AC002407.1/28932-28822
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9491,AC002461.2,1,sp|AC002461.2|AC002461 Homo sapiens BAC clone CTA-204I16 from 7; complete sequence.,1,47,37862,37762,49.67,GAAUGGUCCAAGUGCAGUAGUGUUUACAACUAAAUUGAUCACAAGCAGUUACAGAUUUCCUUGUUCCUUCUCCGCUUCCACUGUUGCAUUUGACUAGACUU,AC002461.2/37862-37762,37862-37762,0,100,AC002461.2/37862-37762
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9533,AC002522.2,1,sp|AC002522.2|AC002522 Homo sapiens Chromosome 22 Cosmid Clone 46a9 In DGCR Region; complete sequence.,0,48,28728,28837,50.05,GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCAAACUCCUUGUUGUACUCUUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU,L77570.1/9025-9134 AK090944.1/923-1032 AC002522.2/28728-28837 AC004461.3/15929-16038,28728-28837,0,109,AC002522.2/28728-28837
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9544,AC002536.1,1,sp|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20; complete sequence.,0,49,126515,126625,56.95,GGCCGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUGGAACACCUCGUUCUACUCUUUCCCGCCUUCUCACUGCUGCACUUGAACAGUCUU,AC129929.5/14459-14349 AC091012.8/88406-88516 AC002536.1/126515-126625,126515-126625,0,110,AC002536.1/126515-126625
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9567,AC002980.1,1,sp|AC002980.1|AC002980 Homo sapiens Xp22 BAC 620F15 (Genome Systems BAC library) complete sequence.,1,50,131345,131245,35.92,GGCUGGCCCAAAGGUAAUGAAUUAUCUCAAUUGACUGUUCACAGAUUAAACUCCUUGUUCUACCCUUUCCCCGCUUCUCACCACUGAAUUUGACUAGUCUU,AC002980.1/131345-131245,131345-131245,0,100,AC002980.1/131345-131245
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9568,AC002981.1,1,sp|AC002981.1|AC002981 Homo sapiens Xp22 BAC GS279A12 (Genome Systems) complete sequence.,0,51,29919,30029,57.87,GGCUGAUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAGAGAUUGAAUUUCUUGUUCUACUCUUUUCCACAUUCUCAGUACUACACUUGACUAGUUUU,AC002981.1/29919-30029,29919-30029,0,110,AC002981.1/29919-30029
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9657,AC003657.1,1,sp|AC003657.1|AC003657 Homo sapiens Xp22 BAC GS-602M16 (Genome Systems Human BAC library) complete sequence.,1,52,30085,29986,51.36,GGCUGGUCUGAGUACAGUAGUGUUUACGACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCUCUCCCACUGCUUCAGUUGGCUAGCCUU,AC003657.1/30085-29986,30085-29986,0,99,AC003657.1/30085-29986
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9680,AC003688.1,1,sp|AC003688.1|AC003688 Homo sapiens chromosome 17; clone hRPC.4_G_17; complete sequence.,1,53,68562,68453,46.38,AGCUGGUCUGAAGGUAGUGAAUUAUUUCAAUUGAUUGUUCACAGUCAGUUACAGACGGAACUUCUUUUUCCACUCUCACUGCUUUCUCACUACUGCAUCUGACUAGUCUU,AC003688.1/68562-68453,68562-68453,0,109,AC003688.1/68562-68453
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9695,AC003959.1,1,sp|AC003959.1|AC003959 Homo sapiens chromosome 5; P1 clone 1029A7 (LBNL H15); complete sequence.,0,54,67501,67609,58.27,GGCUGAUCUGAAGGUAGUGAAUUAUCUCAAUUGACUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUACUCUUUUCCCCCUUCUCACUACUGCCCUUGACUAGUCUU,AC116366.2/79704-79812 AC003959.1/67501-67609 AC079320.9/14741-14849,67501-67609,0,108,AC003959.1/67501-67609
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9726,AC004000.1,1,sp|AC004000.1|AC004000 Human PAC clone RP3-404F18 from Xq23; complete sequence.,0,55,35676,35774,51.79,GGCUGGUCAAAGUGCAGUGGUGUUUACAAGUAAUUGACCACAAUCAGCUACAGAUUUCUUUGUUCCUUCCCACUCCCACUGCUUCACUUGACUUGCCCU,L78810.1/123154-123056 AC004000.1/35676-35774,35676-35774,0,98,AC004000.1/35676-35774
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9757,AC004033.3,1,sp|AC004033.3|AC004033 Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region; complete sequence.,0,56,20213,20321,40.57,GGCUGGGCCAAAGUUAGCUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCAAACUCAUUCGUCUCUGUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA,AC005500.2/132562-132670 AC007731.16/137623-137731 AC004033.3/20213-20321,14366-14260 20213-20321,0,108,AC004033.3/20213-20321
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9757,AC004033.3,1,sp|AC004033.3|AC004033 Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region; complete sequence.,1,57,14366,14260,36.52,GGUUGGUCCGAAGGUAGUGUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACUCCAGGUUCUACUUUUUCACCUUCUCACUACUGCAGUUGACUAGACUU,AC004033.3/14366-14260 AC007731.16/131776-131670 AC005500.2/126715-126609,14366-14260 20213-20321,0,106,AC004033.3/14366-14260
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9853,AC004166.12,1,sp|AC004166.12|AC004166 Homo sapiens Chromosome 7 BAC Clone 239c10; complete sequence.,0,58,158851,158950,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,158851-158950,0,99,AC004166.12/158851-158950
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9857,AC004170.1,1,sp|AC004170.1|AC004170 Homo sapiens clone UWGC: y19x012 from 6p21; complete sequence.,1,59,11802,11703,68.06,GGCUGGUCAGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCUUUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU,AC004170.1/11802-11703 AL669813.6/78419-78518 AL645939.6/47483-47582 AB023058.1/74394-74295 AP000521.1/89762-89663 BX005428.7/65412-65511 AL022723.4/90196-90097,11802-11703,0,99,AC004170.1/11802-11703
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9865,AC004180.1,1,sp|AC004180.1|AC004180 Homo sapiens clone UWGC:M32A from 6p21; complete sequence.,0,60,15616,15712,47.84,GGCUGGUCUGAGUGCAGUGUGUACAACUAAUUGAUCACAACCAGUUAUAGAUGUCUUUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU,AC004180.1/15616-15712,15616-15712,0,96,AC004180.1/15616-15712
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9968,AC004461.3,1,sp|AC004461.3|AC004461 Homo sapiens Chromosome 22q11.2 Cosmid Clone 119f4 In DGCR Region; complete sequence.,0,61,15929,16038,50.05,GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCAAACUCCUUGUUGUACUCUUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU,L77570.1/9025-9134 AK090944.1/923-1032 AC002522.2/28728-28837 AC004461.3/15929-16038,15929-16038,0,109,AC004461.3/15929-16038
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,14,AC004522.3,1,sp|AC004522.3|AC004522 Homo sapiens PAC clone RP4-604G5 from 7; complete sequence.,1,62,96353,96254,42.15,GGCUGGUCAAAGUGCAGUGCUGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCUUUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA,AC004522.3/96353-96254 AC004977.2/41723-41624,96353-96254,0,99,AC004522.3/96353-96254
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,45,AC004562.1,1,sp|AC004562.1|AC004562 Homo sapiens chromosome 17; clone hRPC.34_M_24; complete sequence.,0,63,71580,71689,41.10,GGCUGGUCUGAAGAUAGCGAAGUAUCUCAACUGAUUGUUCACAGUUCGUUAAGGAUCUUACUCUUUGUUCUACAAUUCCCCCCUUCUCACUACUGCACUUGACUAAUAAA,AC004562.1/71580-71689,71580-71689,0,109,AC004562.1/71580-71689
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,108,AC004664.1,1,sp|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16; complete sequence.,0,64,130374,130473,29.56,AAUUGGUCUAAGUAUAGUGGUGUUUAUAACUAAUUGAUCACAAGUGGUAACAGAUUUCUUUGUUCCUUUAGCAGUCCCACUGCUUCACCUGAAUAGUAAA,AC004664.1/130374-130473,130374-130473,0,99,AC004664.1/130374-130473
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,137,AC004707.1,1,sp|AC004707.1|AC004707 Homo sapiens chromosome 17; clone hRPC.117_B_12; complete sequence.,0,65,55444,55543,63.66,GGCUGGUCCUAGUGCAGUGGUGUUUACAACUAAUUCAUCACAACCAGUUAGAGAUUUCUUUCUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU,AC004707.1/55444-55543,55444-55543,0,99,AC004707.1/55444-55543
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,241,AC004849.1,1,sp|AC004849.1|AC004849 Homo sapiens PAC clone RP4-659J6 from 7q33-q35; complete sequence.,0,66,92263,92358,32.98,GGCUGGUCUGAGUAUGGUGUUUAUAACUAUUUGAUCACAAACAAUUACAGAUUUCUUUGUUUCUUCUCCAUCUCACUGCUUCACUUGACUAGAGAA,AC004849.1/92263-92358,92263-92358,0,95,AC004849.1/92263-92358
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,259,AC004867.5,1,sp|AC004867.5|AC004867 Homo sapiens PAC clone RP4-728P19 from 7; complete sequence.,1,67,70782,70683,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,70782-70683,0,99,AC004867.5/70782-70683
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,268,AC004878.3,1,sp|AC004878.3|AC004878 Homo sapiens PAC clone RP4-754G14 from 7; complete sequence.,0,68,8195,8294,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,8195-8294 36220-36319,0,99,AC004878.3/8195-8294
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,268,AC004878.3,1,sp|AC004878.3|AC004878 Homo sapiens PAC clone RP4-754G14 from 7; complete sequence.,0,69,36220,36319,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,8195-8294 36220-36319,0,99,AC004878.3/36220-36319
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,272,AC004882.3,1,sp|AC004882.3|AC004882 Homo sapiens PAC clone RP1-76B20 from 22; complete sequence.,0,70,105364,105463,35.39,GGCUAGUCCAAGUGCAGCAGUGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCUUUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC,AC005529.7/286625-286724 AC004882.3/105364-105463,105364-105463,0,99,AC004882.3/105364-105463
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,285,AC004895.2,1,sp|AC004895.2|AC004895 Homo sapiens PAC clone RP4-810E6 from 7; complete sequence.,0,71,20977,21068,33.26,GGCUGGCCGGGCAUGGUGGUGUUCAUAGCUAAUCAUCAGUUACAGAUUCCUUGGUUCCUUCCCCACUCCCACUGCUUCACUUGACUAGCCUG,AC004895.2/20977-21068,20977-21068,0,91,AC004895.2/20977-21068
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,294,AC004904.1,1,sp|AC004904.1|AC004904 Homo sapiens PAC clone RP5-828F13 from 1; complete sequence.,0,72,117302,117405,34.18,GCCUUCUCAGUGCAGUGGUAUUGACAUUAACAACUAAUUGAUCACAAGCAGUUACAGAUUUAUUUGUUCCUUCUCCACUCCCACUCCUUCACUUGACUAUCCUU,AL390066.5/22135-22238 AC004904.1/117302-117405,117302-117405,0,103,AC004904.1/117302-117405
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,353,AC004966.2,1,sp|AC004966.2|AC004966 Homo sapiens PAC clone RP5-1107K15 from 7; complete sequence.,0,73,60153,60263,46.72,GGCUGGUCCAGAUGGAGUGAGUUAUCUCAAUUGAUUGUUCACAAGCAGUUACUGAUGGAACUGCUGGUUCUGUUCUUUUCCCACUUCUCACUACUGCAUUUGUCUAGUUAA,AC092355.2/35788-35678 AC004966.2/60153-60263,60153-60263,0,110,AC004966.2/60153-60263
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,364,AC004977.2,1,sp|AC004977.2|AC004977 Homo sapiens PAC clone RP5-1152C17 from 7; complete sequence.,1,74,41723,41624,42.15,GGCUGGUCAAAGUGCAGUGCUGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCUUUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA,AC004522.3/96353-96254 AC004977.2/41723-41624,41723-41624,0,99,AC004977.2/41723-41624
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,366,AC004980.5,1,sp|AC004980.5|AC004980 Homo sapiens PAC clone RP5-1158B1 from 7q11.2-q22; complete sequence.,0,75,9646,9745,45.60,GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA,AC004980.5/9646-9745 AC005088.3/128945-129044 AC006480.3/63240-63141 AF030453.1/97393-97492 AC142303.1/110627-110528 AC091390.1/52337-52238 AC093135.2/10087-9988,9646-9745,0,99,AC004980.5/9646-9745
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,419,AC005037.2,1,sp|AC005037.2|AC005037 Homo sapiens BAC clone RP11-469M7 from 2; complete sequence.,0,76,151239,151332,31.31,GGCUGGUCCAAUGGUAGUGGGUUAUCAGAACUUAAUAGUUAUUAGUGUCACGAAAAUUAGUAUACAACCCCUACCGCUAAAUUUGACUGGCGUU,AC005037.2/151239-151332,151239-151332,0,93,AC005037.2/151239-151332
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,425,AC005043.2,1,sp|AC005043.2|AC005043 Homo sapiens BAC clone RP11-576N21 from 1; complete sequence.,0,77,153390,153483,34.14,GGCUGGCCCAAUGGUAGUGGGUUAUCAGAACUUAUCAACAUUAGUGUUGCUAAAGUUGGUAUACAACCCCCCACUGCGAAAUUUGGCUGGCUUU,AC005043.2/153390-153483 AL359839.4/22859-22766,153390-153483,0,93,AC005043.2/153390-153483
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,430,AC005049.2,1,sp|AC005049.2|AC005049 Homo sapiens BAC clone CTB-23I15 from 7; complete sequence.,0,78,32828,32927,47.30,AGCUGGCCCGAAUGCAGCGGUGGUUACAGUUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCGA,AC005049.2/32828-32927,32828-32927,0,99,AC005049.2/32828-32927
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,440,AC005064.3,1,sp|AC005064.3|AC005064 Homo sapiens clone CTB-107G13; complete sequence.,1,79,33168,33072,49.83,UCCUGGUCCAAGUCCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACUGAUUUCUUUGUUCCUUCAUUUCCACUGCUUCACUUGACUAGCCUA,AC005064.3/33168-33072,33168-33072 31637-31539,0,96,AC005064.3/33168-33072
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,440,AC005064.3,1,sp|AC005064.3|AC005064 Homo sapiens clone CTB-107G13; complete sequence.,1,80,31637,31539,49.56,UCCUGGUCCAAGUGCAGUGGUAUUUACAACUGAUUUAUACAACCAGUUACUGAUUUCUUUGUUCCUUCUACAUUCCCACUGCUUCACUUGACUAGCCUA,AC005064.3/31637-31539,33168-33072 31637-31539,0,98,AC005064.3/31637-31539
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,446,AC005071.2,1,sp|AC005071.2|AC005071 Homo sapiens clone RG161A02; complete sequence.,1,81,128183,128084,47.00,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGCAUA,AC005071.2/128183-128084,128183-128084,0,99,AC005071.2/128183-128084
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,450,AC005076.2,1,sp|AC005076.2|AC005076 Homo sapiens BAC clone CTA-227L24 from 7q21.1-q21.2; complete sequence.,1,82,68673,68574,53.34,GGCUGGUCCCAGUGCAGUGGUGUUGACAACUAAUUGAUCAUAGCCCGUUACAGAUUUCUUUGCUCCUUCUCCAAUCUCCCUGCUUCACUUGACUGGCCUA,AC005076.2/68673-68574,68673-68574,0,99,AC005076.2/68673-68574
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,461,AC005088.3,1,sp|AC005088.3|AC005088 Homo sapiens BAC clone CTA-313A17 from 7q22-q31.1; complete sequence.,0,83,128945,129044,45.60,GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA,AC004980.5/9646-9745 AC005088.3/128945-129044 AC006480.3/63240-63141 AF030453.1/97393-97492 AC142303.1/110627-110528 AC091390.1/52337-52238 AC093135.2/10087-9988,128945-129044,0,99,AC005088.3/128945-129044
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,469,AC005098.2,1,sp|AC005098.2|AC005098 Homo sapiens BAC clone CTA-350L10 from 7q11.2; complete sequence.,0,84,170871,170970,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,170871-170970,0,99,AC005098.2/170871-170970
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,641,AC005346.1,1,sp|AC005346.1|AC005346 Homo sapiens chromosome 16; cosmid clone 2H2 (LANL); complete sequence.,1,85,36901,36804,36.02,AGCUGGUCCAAGCACAGUGGUGUUCACAACGAAUUGAUCACAGCCAGGUAGAAUUCUUCAUUCUUUCUCCAGUCCUACUGCUUUGCUUGACCAGCCUU,AC009065.8/145561-145464 L39891.1/7488-7391 U24498.1/4924-4827 AC005346.1/36901-36804,36901-36804,0,97,AC005346.1/36901-36804
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,693,AC005409.1,1,sp|AC005409.1|AC005409 Homo sapiens chromosome 10 clone 14951 map 10; complete sequence.,0,86,5761,5869,59.06,GGCUGGUCCAAUGGUAGUCAGUUAUCUCAAUUGAUUGCUCACAGUCAGUUACAGGUCAAACUCCUUGUUCUUCUCUUUUCCCCCCUCACUACUGUACUUGGCUAGUCUA,AC010205.6/47313-47421 AC005409.1/5761-5869,5761-5869,0,108,AC005409.1/5761-5869
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,699,AC005477.1,1,sp|AC005477.1|AC005477 Homo sapiens PAC clone RP1-283M22 from 14; complete sequence.,0,87,29987,30094,37.87,AACUGGUCCAAAGGUAAGAGGUAUCUCCAUUGAUUGUUCAGUCAGUUACAGAUCAAACUCCUUGCUCUACUUUUUUCUCCCUUCUCACUAGUGUACUUGACUAGUCUU,AC005477.1/29987-30094,29987-30094,0,107,AC005477.1/29987-30094
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,709,AC005488.2,1,sp|AC005488.2|AC005488 Homo sapiens BAC clone RP11-313P13 from 7; complete sequence.,0,88,148923,149022,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,176899-176998 148923-149022 121249-121150,0,99,AC005488.2/148923-149022
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,709,AC005488.2,1,sp|AC005488.2|AC005488 Homo sapiens BAC clone RP11-313P13 from 7; complete sequence.,0,89,176899,176998,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,176899-176998 148923-149022 121249-121150,0,99,AC005488.2/176899-176998
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,709,AC005488.2,1,sp|AC005488.2|AC005488 Homo sapiens BAC clone RP11-313P13 from 7; complete sequence.,1,90,121249,121150,45.62,AGCUGGCCCGAGUGCAGUGGUGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA,AC105418.5/18271-18172 AC115106.2/61464-61563 AC115108.2/57544-57643 AC115107.3/91583-91682 AC006014.3/64093-64192 AC005488.2/121249-121150,176899-176998 148923-149022 121249-121150,0,99,AC005488.2/121249-121150
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,718,AC005500.2,1,sp|AC005500.2|AC005500 Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region; complete sequence.,0,91,132562,132670,40.57,GGCUGGGCCAAAGUUAGCUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCAAACUCAUUCGUCUCUGUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA,AC005500.2/132562-132670 AC007731.16/137623-137731 AC004033.3/20213-20321,132562-132670 126715-126609,0,108,AC005500.2/132562-132670
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,718,AC005500.2,1,sp|AC005500.2|AC005500 Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region; complete sequence.,1,92,126715,126609,36.52,GGUUGGUCCGAAGGUAGUGUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACUCCAGGUUCUACUUUUUCACCUUCUCACUACUGCAGUUGACUAGACUU,AC004033.3/14366-14260 AC007731.16/131776-131670 AC005500.2/126715-126609,132562-132670 126715-126609,0,106,AC005500.2/126715-126609
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,731,AC005520.2,1,sp|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 14q24.3; complete sequence.,0,93,8812,8921,45.59,GGCUGGUCUGAAGGUAGUGAGUUAUCUCAACUGAUGUUCACAGUCAGUUACAGAUCAAGUGCCUUGUUUUACUUUUUCCCCUCUUCUCACUACUGCAUUUGACUAAUUAA,AC005520.2/8812-8921,57074-57180 8812-8921,0,109,AC005520.2/8812-8921
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,731,AC005520.2,1,sp|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 14q24.3; complete sequence.,0,94,57074,57180,28.86,GGCUGGUCCAAAGGUAGUGAGUUAUAUCACCUGAUUGUUCAGUCAGUUACAGGCCAAACCCCUUGUUCUACUCUUUUCCCUUCUCAAUACUGCACUUGUUUUUAAAU,AC005520.2/57074-57180,57074-57180 8812-8921,0,106,AC005520.2/57074-57180
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,738,AC005529.7,1,sp|AC005529.7|AC005529 Homo sapiens chromosome 22 clone bk256d12 map 22q12; complete sequence.,0,95,286625,286724,35.39,GGCUAGUCCAAGUGCAGCAGUGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCUUUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC,AC005529.7/286625-286724 AC004882.3/105364-105463,286625-286724,0,99,AC005529.7/286625-286724
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,746,AC005537.2,1,sp|AC005537.2|AC005537 Homo sapiens BAC clone GS1-308H5 from 7p13-p11.2; complete sequence.,1,96,47507,47397,39.23,GGCUGGUCUGAAGGUAGCAGGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAUAGAGCAAACUGCUUGCUCUACUCUUUCACCCCUUCUCACUACUGCACUUGACUAGUUGA,AC005537.2/47507-47397,47507-47397,0,110,AC005537.2/47507-47397
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,830,AC005631.4,1,sp|AC005631.4|AC005631 Homo sapiens PAC clone RP5-1129J21 from 7; complete sequence.,1,97,127031,126920,36.33,UACUGAUAACUGGUAGUGAGUUAUCCCAAUUGAUGGUUCACUGUCAGUUACCGAUCAAAUUCCUUGUUCUAUACUCUUUACUCCCCUUUCACUACUGCACUUAACUGGUCUU,AC005631.4/127031-126920,127031-126920,0,111,AC005631.4/127031-126920
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,841,AC005669.1,1,sp|AC005669.1|AC005669 Homo sapiens chromosome 3; clone hRPK.165_I_16; complete sequence.,1,98,3654,3545,53.90,GGCUGGUCUGAAGGUAGUGAGCUAUCUCAAUCGGAUUGUUCACACUCAGUUACAGAUUGAACUCCUUGUUCUACUUUCCCUGCUUCUCUCUACUGCAAUUGACUAGUCUU,AC005669.1/3654-3545 AC099782.2/89112-89221,3654-3545,0,109,AC005669.1/3654-3545
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,934,AC005821.1,1,sp|AC005821.1|AC005821 Homo sapiens chromosome 17; clone hRPK.156_L_14; complete sequence.,0,99,145009,145111,37.41,GGCUGGUCCAAAGAUGGUGAGUUAUCUCAAUUGGUUGUUCAUAGUCAGUUACAGACCAAAGUCUUUGUUCUACUCUUUCCUCCUUUCUGACUUUACUAGUCUU,AC005821.1/145009-145111 AC080038.5/55484-55586,145009-145111,0,102,AC005821.1/145009-145111
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,940,AC005829.1,1,sp|AC005829.1|AC005829 Homo sapiens chromosome 17; clone hRPK.259_G_18; complete sequence.,0,100,85717,85816,60.32,GGCUGGUCCAAGUAUAUUGGUGUUUACUAUUAAUUGAUCACAGCCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGAUUAGCCUU,AC005829.1/85717-85816 AC090419.7/96929-97028 AC127032.8/111639-111738,85717-85816,0,99,AC005829.1/85717-85816
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,945,AC005837.1,1,sp|AC005837.1|AC005837 Homo sapiens chromosome 17; clone hRPK.318_A_15; complete sequence.,0,101,59763,59856,30.83,AGCUGGUCCAAUGGUGUUGGGUUAUCAGAACUUGUUAACAUUAGUGUCACUAAACUUGAUAUACAACCCCCUACUGCUAAAGUUAACUGGCUUU,AC005837.1/59763-59856,59763-59856,0,93,AC005837.1/59763-59856
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,986,AC005899.1,1,sp|AC005899.1|AC005899 Homo sapiens chromosome 17; clone  hRPK.227_G_15; complete sequence.,1,102,173122,173016,41.58,AGCUGGUCUGAAGGUAAUGAGUAAUCUCGAUUGUUCACAGUCAGUUACAGAUUGAGCUCCUGAUCUACUCUUUCCCUGCUUCUCACUACUGCACUUUGACUAGUCUU,AC005899.1/173122-173016 AC079336.5/41507-41401,173122-173016,0,106,AC005899.1/173122-173016
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1039,AC005995.3,1,sp|AC005995.3|AC005995 Homo sapiens PAC clone RP1-42M2 from 7; complete sequence.,0,103,39168,39268,34.44,GGAUGGUCAAAGUGCAACGCGGUUUACAGCUAAUUGAUCACCACCAGUUACAGAUUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUCACUAGCCUA,AC005995.3/39168-39268,39168-39268,0,100,AC005995.3/39168-39268
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1055,AC006011.2,1,sp|AC006011.2|AC006011 Homo sapiens PAC clone RP5-935K16 from 2; complete sequence.,1,104,129533,129430,44.64,GGCUGGGCCAAGUGCAGUGGUGUUUACAACUGGUUGAUUGAUUAUAACCACUUACAGAUUUCUUUGUUCCUUCUCCAUUCCCAUUGCUUCACUUGAUUAGCCUA,AC006011.2/129533-129430,98679-98586 129533-129430,0,103,AC006011.2/129533-129430
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1055,AC006011.2,1,sp|AC006011.2|AC006011 Homo sapiens PAC clone RP5-935K16 from 2; complete sequence.,1,105,98679,98586,41.27,GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUCAUUAACAUUAGUGUCACUGAAGUUGAUAUACAACCCCCAACUGCUAAAUUUGACUGGCUUA,AC006011.2/98679-98586,98679-98586 129533-129430,0,93,AC006011.2/98679-98586
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1058,AC006014.3,1,sp|AC006014.3|AC006014 Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1; complete sequence.,0,106,64093,64192,45.62,AGCUGGCCCGAGUGCAGUGGUGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA,AC105418.5/18271-18172 AC115106.2/61464-61563 AC115108.2/57544-57643 AC115107.3/91583-91682 AC006014.3/64093-64192 AC005488.2/121249-121150,8437-8338 36405-36306 64093-64192,0,99,AC006014.3/64093-64192
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1058,AC006014.3,1,sp|AC006014.3|AC006014 Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1; complete sequence.,1,107,36405,36306,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,8437-8338 36405-36306 64093-64192,0,99,AC006014.3/36405-36306
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1058,AC006014.3,1,sp|AC006014.3|AC006014 Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1; complete sequence.,1,108,8437,8338,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,8437-8338 36405-36306 64093-64192,0,99,AC006014.3/8437-8338
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1066,AC006023.2,1,sp|AC006023.2|AC006023 Homo sapiens PAC clone RP5-1147A1 from 7p14-p12; complete sequence.,1,109,94159,94050,53.41,GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCAGUCAGUUACAGAUCGAACUCUUUGUUCUCGUCUUCCCCCCGCUUCUCACUGCUGCACUUGACUAGUCUG,AC006023.2/94159-94050,94159-94050,0,109,AC006023.2/94159-94050
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1089,AC006046.1,1,sp|AC006046.1|AC006046 Homo sapiens clone UWGC:r9a from 6p21; complete sequence.,0,110,40568,40667,59.37,GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGUUUUUGUUUCAUCUUCACUCCCACUGUUUCACUUGACUAGCCUU,AB000878.1/14612-14711 AB000882.1/67188-67287 AL663061.8/4461-4362 AC006046.1/40568-40667 AP000506.1/47207-47306 AL662866.7/78597-78498 BX001040.14/26222-26123,40568-40667,0,99,AC006046.1/40568-40667
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1098,AC006057.5,1,sp|AC006057.5|AC006057 Homo sapiens 12 PAC RP1-96H9 (Roswell Park Cancer Institute Human PAC Library) complete sequence.,0,111,130589,130697,46.23,GGCUGGGCUAAAAGUAGUGAGUUAUCUCAAUGGAUUGCUCACGUCAGUUACAGAUGGAAGUCCUUGUUCUACUCUUCCCUGUUUCUCACUACCGCGCUUGACUAGUCUC,AC006057.5/130589-130697,130589-130697,0,108,AC006057.5/130589-130697
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1121,AC006116.1,1,sp|AC006116.1|AC006116 Homo sapiens chromosome 19; BAC CIT-B-393i15 (BC301323); complete sequence.,1,112,40974,40864,46.41,GGCUGGCUCAAAGGUAGUGAGUUCUACCAAUGUAUUGUCCACAGUCAGUUACAGACCAAAUUCCUUGGUCUACUCUUUCCCCCCUCCUCACUAAUGCACUUGACUAGUCUU,AC006116.1/40974-40864,40974-40864,0,110,AC006116.1/40974-40864
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1166,AC006165.1,1,sp|AC006165.1|AC006165 Homo sapiens clone UWGC:y54c125 from 6p21; complete sequence.,0,113,22709,22817,52.53,GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU,AC006165.1/22709-22817 AL845353.7/119651-119543 AL662848.6/44590-44482 BX248307.7/38675-38567 AB088101.1/9930-10038 AB023051.1/68790-68898 AP000512.1/105775-105883 AL662797.7/59499-59391,22709-22817,0,108,AC006165.1/22709-22817
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1272,AC006360.2,1,sp|AC006360.2|AC006360 Homo sapiens PAC clone RP5-1140N14 from 14q24.3; complete sequence.,0,114,1845,1950,55.60,GGCUAGUCUGAGGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUUACAGAUUGAACUCCUUGUUCUUUCCUUCCCCCUUUCUCACUGCUGCUCUUGACUAGUCUU,AC006360.2/1845-1950,1845-1950,0,105,AC006360.2/1845-1950
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1327,AC006452.5,1,sp|AC006452.5|AC006452 Homo sapiens PAC clone RP4-592P3 from 7; complete sequence.,0,115,48117,48226,31.41,GACUGGUCUGAAGGCAGUGAGUCAACUGAAUUGAUUAUUCACAGUCAGUUACGCAUCCAACUCUUUAUUCUACUCUUCCCCCCUUCUCACUACUGCAUUUGACACUUGUG,AC006452.5/48117-48226,48117-48226,0,109,AC006452.5/48117-48226
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1350,AC006480.3,1,sp|AC006480.3|AC006480 Homo sapiens BAC clone RP11-166O4 from 7p11.2-q11.2; complete sequence.,1,116,63240,63141,45.60,GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA,AC004980.5/9646-9745 AC005088.3/128945-129044 AC006480.3/63240-63141 AF030453.1/97393-97492 AC142303.1/110627-110528 AC091390.1/52337-52238 AC093135.2/10087-9988,63240-63141,0,99,AC006480.3/63240-63141
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1367,AC006511.5,1,sp|AC006511.5|AC006511 Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,117,154160,154061,36.53,GGCUGGUCUGAGUACAGUGGCAUUUACAACUAACUGAUCACAACCAGUUAUGAAUUUCUUCAUUACUUUUCCACUCACACUGCUUCACUUGACCAGCUUU,AC006511.5/154160-154061,154160-154061,0,99,AC006511.5/154160-154061
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1372,AC006517.46,1,sp|AC006517.46|AC006517 Homo sapiens 12 BAC RP11-277J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,118,14909,15008,45.04,AGCUGGUCUAAAUGCAGUGGUCCUUACAACCAACUGAUCACAACCAGUAACAAUUUUCUUUGUUCCUUCUCCACUCUCACAGCUUCACUUGACUAGCCUU,AC006517.46/14909-15008,65260-65369 14909-15008 81215-81322,0,99,AC006517.46/14909-15008
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1372,AC006517.46,1,sp|AC006517.46|AC006517 Homo sapiens 12 BAC RP11-277J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,119,65260,65369,36.48,GCCUCGUCUGAAGGUAGUCAGUUACCUCAAUUGUUUGUUCACAGUGAAUUACAGAUCGAACUCCUUGUUCUACUCUUCCCCACUUCUCACUACUGCACUUGUCUUAAAGA,AC006517.46/65260-65369,65260-65369 14909-15008 81215-81322,0,109,AC006517.46/65260-65369
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1372,AC006517.46,1,sp|AC006517.46|AC006517 Homo sapiens 12 BAC RP11-277J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,120,81215,81322,34.99,GAAUUAUCUAGGCAGUGAGUUAUCCCAAUUGAUUGUUCAGGAUCAGUUACAGAUCAUACUCCUUGCUCUACUUCCCCCCCCCCCUCACUACUGCAGUUGAGUAGUAUU,AC006517.46/81215-81322,65260-65369 14909-15008 81215-81322,0,107,AC006517.46/81215-81322
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1409,AC006583.31,1,sp|AC006583.31|AC006583 Homo sapiens 3 BAC RP11-491D6 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,121,26792,26891,55.89,GGCUAGUCUGAGUGCAGUAAUGUUUACAAGUAAUUGAUCACAAGCGGUUACAGAUUUAUUUGUUCCUUCUCCACCUUCAUUGCUUCACUUGACUAGCCUU,AC006583.31/26792-26891,26792-26891,0,99,AC006583.31/26792-26891
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1432,AC006960.1,1,sp|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15; complete sequence.,1,122,34043,33934,48.65,GGCCAGUCAGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAUCAGUUACAGGUCAAACUCCUUGCUCUACUCUUUUCCCUUUUCUCACUGCUGCACUGGACUAGUCUA,AC008266.3/96067-95958 AC006960.1/34043-33934,34043-33934,0,109,AC006960.1/34043-33934
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1435,AC006963.4,1,sp|AC006963.4|AC006963 Homo sapiens PAC clone RP1-278D1 from X; complete sequence.,1,123,55748,55649,55.06,GGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUUCACUUUGACUGCUUCACUCGGCUAGCCAG,AC006963.4/55748-55649,55748-55649,0,99,AC006963.4/55748-55649
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1465,AC006995.5,1,sp|AC006995.5|AC006995 Homo sapiens BAC clone RP11-396K3 from 7; complete sequence.,1,124,207245,207146,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,207245-207146 179291-179192,0,99,AC006995.5/207245-207146
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1465,AC006995.5,1,sp|AC006995.5|AC006995 Homo sapiens BAC clone RP11-396K3 from 7; complete sequence.,1,125,179291,179192,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,207245-207146 179291-179192,0,99,AC006995.5/179291-179192
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1470,AC007000.2,1,sp|AC007000.2|AC007000 Homo sapiens BAC clone RP11-467H10 from 7; complete sequence.,0,126,18245,18344,47.22,GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA,AC006014.3/8437-8338 AC105418.5/45946-46045 AC005488.2/176899-176998 AC115108.2/1882-1783 AC004878.3/8195-8294 AC007000.2/18245-18344 AC115106.2/5808-5709 AC118138.2/161432-161333 AC005488.2/148923-149022 AC006995.5/207245-207146 AC005098.2/170871-170970 AC006995.5/179291-179192 AC115107.3/35927-35828 AC004166.12/158851-158950 AC115106.2/33776-33677 AC006014.3/36405-36306 AC115108.2/29853-29754 AC004867.5/70782-70683 AC004878.3/36220-36319 AC114737.3/87408-87507 AC105418.5/73922-74021 AC115107.3/7941-7842 AC115107.3/63895-63796 AC138783.10/173365-173266,18245-18344,0,99,AC007000.2/18245-18344
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1480,AC007011.1,1,sp|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7; complete sequence.,0,127,132225,132341,31.87,AGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGUCUCAACCCGUUGCAGAUGUGUUUGUUUUGUUUUGUUUUGUUUUGUUUUCUCCACUCCCACUGCUUCACCUGAUUAGCCUU,AC007011.1/132225-132341 AC027687.7/144472-144356,132225-132341,0,116,AC007011.1/132225-132341
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1486,AC007021.3,1,sp|AC007021.3|AC007021 Homo sapiens PAC clone RP6-155F9 from Xq23; complete sequence.,0,128,17538,17646,49.56,GGCUGGCCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAAUUACAUAUUGAACUUUUUGUUCUACUCUUUCUCCCCUUGUCACUACUGUACUUGACUACACUU,AC007021.3/17538-17646,17538-17646,0,108,AC007021.3/17538-17646
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1494,AC007029.3,1,sp|AC007029.3|AC007029 Homo sapiens clone RP5-855F16; complete sequence.,1,129,92177,92083,49.29,GACUGGUCCAAGUGGUGUUUAUAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCAUUCUCACUGCUUCACUUGACUAGCCUU,AC007029.3/92177-92083,92177-92083,0,94,AC007029.3/92177-92083
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1519,AC007066.4,1,sp|AC007066.4|AC007066 Homo sapiens chromosome 9; clone hRPK.355_O_1; complete sequence.,0,130,98741,98845,36.75,AGCUGGUCCAAAGACAGUGAGUUAUCUCGAUUGUUCAGUCAGUUACAGAACAAACUCCUUGUUCUACUCUUUUCCCCGUUCUCACUACUGCACUUUAGUAGUCUU,AC007066.4/98741-98845,98741-98845,0,104,AC007066.4/98741-98845
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1600,AC007242.3,1,sp|AC007242.3|AC007242 Homo sapiens BAC clone RP11-182H9 from 2; complete sequence.,1,131,69448,69349,56.43,AGCUGAUCCGAGUGCAGUGGUGUUUACAACUACUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUAACUGGCCAA,AC007242.3/69448-69349,69448-69349,0,99,AC007242.3/69448-69349
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1631,AC007284.4,1,sp|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y; complete sequence.,0,132,35629,35738,40.63,GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUAUUCACAGUUAGCUACCAGUUGAACUCCUUACUCUGCUUUUUCUCCCCUUAUCACUUCUGUGCUUGAUUAGUCUU,AC007284.4/35629-35738,35629-35738,0,109,AC007284.4/35629-35738
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1725,AC007435.12,1,sp|AC007435.12|AC007435 Homo sapiens; clone 6_C_10; complete sequence.,0,133,33251,33343,32.47,GGCUGCUCCAAUGGUAGUGGGUUAUCAAAAUUUAUUAACAUUAGUUCACUAAAGUUGAUAUAUAACCCCCCAUUGCUAAAUCUGACUGGCUUU,AC020596.8/106049-106141 AC007435.12/33251-33343,33251-33343,0,92,AC007435.12/33251-33343
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1769,AC007536.10,1,sp|AC007536.10|AC007536 Homo sapiens 12 BAC RP11-277E18 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,134,10244,10138,29.96,AUUAUCUACGUAGUGAGUUAUCCCAAUUGAUUGUUCAGGGUCAGUUACAGAUCAAACUCCUUGUUCCACUCUUCCCCAUCCCCCCACUACGGCACUUCACUAGUAUU,AC007536.10/10244-10138,10244-10138,0,106,AC007536.10/10244-10138
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1811,AC007610.9,1,sp|AC007610.9|AC007610 Homo sapiens chromosome 16 clone RP11-429P3; complete sequence.,1,135,110781,110689,36.69,AGCUGGUCUGAUGGUAGUGGGUUAUCAGGACUUAUUAACAUUAGUGUCACUGAAGUUGGUAUACAACCCCCCACGCUAAGUUUGACUGGCUUU,AC007610.9/110781-110689 M77132.1/116-208,110781-110689,0,92,AC007610.9/110781-110689
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1846,AC007679.4,1,sp|AC007679.4|AC007679 Homo sapiens BAC clone RP11-273D4 from 2; complete sequence.,0,136,134611,134713,54.80,GGCUGGUCCAUAUGCAGUGGUUUUACAAGUAAUUUAUCACAACCAGUUAGUUACAGAUUUCUUUGCUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU,AC007679.4/134611-134713,134611-134713,0,102,AC007679.4/134611-134713
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1852,AC007685.2,1,sp|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y; complete sequence.,0,137,78902,79012,46.61,GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUUUCACAGUCAGCUACAGAUUGAACUCCUUGCUCUACUCUUUUCCCCCCUUAUCACUUCUGCGCUUGUUUAGUCUU,AC007685.2/78902-79012,78902-79012,0,110,AC007685.2/78902-79012
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1866,AC007731.16,1,sp|AC007731.16|AC007731 Homo sapiens chromosome 22 clone b562f10 map 22q11; complete sequence.,0,138,137623,137731,40.57,GGCUGGGCCAAAGUUAGCUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCAAACUCAUUCGUCUCUGUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA,AC005500.2/132562-132670 AC007731.16/137623-137731 AC004033.3/20213-20321,137623-137731 131776-131670,0,108,AC007731.16/137623-137731
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1866,AC007731.16,1,sp|AC007731.16|AC007731 Homo sapiens chromosome 22 clone b562f10 map 22q11; complete sequence.,1,139,131776,131670,36.52,GGUUGGUCCGAAGGUAGUGUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACUCCAGGUUCUACUUUUUCACCUUCUCACUACUGCAGUUGACUAGACUU,AC004033.3/14366-14260 AC007731.16/131776-131670 AC005500.2/126715-126609,137623-137731 131776-131670,0,106,AC007731.16/131776-131670
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1923,AC007880.2,1,sp|AC007880.2|AC007880 Homo sapiens BAC clone RP11-323F11 from 2; complete sequence.,0,140,67670,67769,61.17,GGCUGGCUGGAAUGUAGUGAUGUUUACAACUAAUUGAUCACAAGCAGUUACCGAUUCCUUUGUUCCUGCUCCACUCUCACUGCUUCACUUGACUAGCCUU,AC007880.2/67670-67769,67670-67769,0,99,AC007880.2/67670-67769
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1939,AC007922.13,1,sp|AC007922.13|AC007922 Homo sapiens chromosome 18; clone RP11-178F10; complete sequence.,1,141,107779,107681,29.78,GAUUGUAGACCAGUGAUUGGUUUAUAACCAGUAAUUGAUCACAACUGGUUAGAUUUCUUUGUUUCUUCUUCACUCCCACUGCUUCACUUAAUUAGCCUU,AC007922.13/107779-107681 AF232229.1/4627-4725,107779-107681,0,98,AC007922.13/107779-107681
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1962,AC007982.2,1,sp|AC007982.2|AC007982 Homo sapiens chromosome 17; clone RP11-44H5; complete sequence.,0,142,33188,33296,41.92,GGCUGGUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCAGUCACUUGCAGAUCAAACUCCUUAUUCUACUCUUUACCCCCUUCUCACUACUGCACUUGACUAUUCGA,AC007982.2/33188-33296,33188-33296,0,108,AC007982.2/33188-33296
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1971,AC008006.10,1,sp|AC008006.10|AC008006 Homo sapiens chromosome 18; clone RP11-233K20; complete sequence.,1,143,66239,66141,58.22,GGCUGGUCCAAGUGUAGUGGUGUUUAGAACUAAUUGGUCCAACCAGUUACAGAUUUCUUUGUUCCCUCUCCACUCCCACUGCUUCACUUGACUAGCCUU,AC008006.10/66239-66141,66239-66141,0,98,AC008006.10/66239-66141
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2030,AC008121.43,1,sp|AC008121.43|AC008121 Homo sapiens 12 BAC RP11-407N8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,144,34705,34802,46.62,GGUUGGUUUGAGUGCAGUGGUGUUUACAGUGAACUGAUCACAGCCAGUUAUAGAUUUUUGUUCCUCCUCCACUCCCACUGCUUCAAUUGACUAGGCUA,AC008121.43/34705-34802,34705-34802,0,97,AC008121.43/34705-34802
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2037,AC008128.19,1,sp|AC008128.19|AC008128 Homo sapiens 12 BAC RP11-410A13 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,145,72138,72043,47.32,AGCUGGUCCAAAGGUACUGUACUAUUUCAACCGAUUGUUCACAGUCAGUUACAGAUUGUCUUUUCCUCCUUCUCACUACUGCACUUGACUAGUCUU,AC008128.19/72138-72043,72138-72043,0,95,AC008128.19/72138-72043
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2049,AC008158.16,1,sp|AC008158.16|AC008158 Homo sapiens chromosome 17; clone RP11-42F20; complete sequence.,0,146,19688,19798,31.72,GGCUAGUCUGAAGGUAGUGAGUUACCUCAGUUGACUGUUCAGUUAGUUGCAGAUCAAACUCCUUGUUCUACUCUUUCCCCUCUUUCCACUACUGCAUAUGUGACUAGUCUA,AC008158.16/19688-19798 AC018628.13/4386-4276,105175-105274 19688-19798,0,110,AC008158.16/19688-19798
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2049,AC008158.16,1,sp|AC008158.16|AC008158 Homo sapiens chromosome 17; clone RP11-42F20; complete sequence.,0,147,105175,105274,62.92,GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCGGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCAAUUGAUCAGCCUU,AC008158.16/105175-105274,105175-105274 19688-19798,0,99,AC008158.16/105175-105274
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2074,AC008265.15,1,sp|AC008265.15|AC008265 Homo sapiens chromosome 7 clone RP11-256C24; complete sequence.,0,148,5480,5572,29.21,GGCUGGUCCAAUGAUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUAACUAAAGUUGGUAGAUAAUCCCCCCUGCUAAAUUUGACUGGCUAA,AC008265.15/5480-5572 AC025593.5/61512-61420,5480-5572,0,92,AC008265.15/5480-5572
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2075,AC008266.3,1,sp|AC008266.3|AC008266 Homo sapiens PAC clone RP5-1145A24 from 7p11.2-p21; complete sequence.,1,149,96067,95958,48.65,GGCCAGUCAGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAUCAGUUACAGGUCAAACUCCUUGCUCUACUCUUUUCCCUUUUCUCACUGCUGCACUGGACUAGUCUA,AC008266.3/96067-95958 AC006960.1/34043-33934,96067-95958,0,109,AC008266.3/96067-95958
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2092,AC008372.6,1,sp|AC008372.6|AC008372 Homo sapiens chromosome 14 clones RP11-111O16 and RP11-61F4 containing genes for nuclear receptor coactivator NCoA-62 (nuclear receptor coactivator NCoA-62) gene; complete cds; and unknown gene; complete sequence.,1,150,112253,112143,52.34,GGCUGGCCUGAAGGUAUUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUCACAGAUCAAACUCCUUGCUCUACUCUUUCUCCCCUUCUCACUAUUGCACUUGACUAGUCUA,AC008372.6/112253-112143,112253-112143,0,110,AC008372.6/112253-112143
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2095,AC008378.6,1,sp|AC008378.6|AC008378 Homo sapiens chromosome 5 clone CTC-209H22; complete sequence.,0,151,143638,143739,40.58,GGCUGGUCCAAAGGCAAUGAAUUAUCUCAAUUGUUCAUAGUUAGUUACAGGUGGAACUCCUUGUUCUGCUCUUUUGCCUGACUACUGCACUUGACUAAUGUU,AC008378.6/143638-143739,143638-143739,0,101,AC008378.6/143638-143739
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2110,AC008393.7,1,sp|AC008393.7|AC008393 Homo sapiens chromosome 5 clone CTC-241N9; complete sequence.,1,152,106478,106385,33.68,AGCGGGUCUGAUGGUGGUGGGUUAUGAGAACUGAUUAACAUUAGUGUCACUAACGUUGGUAUACAACUCUCCACUGCUAAGUUUAACUGGCUUA,AC008393.7/106478-106385,106478-106385,0,93,AC008393.7/106478-106385
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2124,AC008412.8,1,sp|AC008412.8|AC008412 Homo sapiens chromosome 5 clone CTC-281H14; complete sequence.,1,153,62543,62444,56.78,UGGUGGUCCGAGUGCAAUGGUGUUUACAACUAAUUGGUCACAACCAGUUACAGGUUUCUUUAUUCCUUCUCCAUUCCCACUGCUUCACUUGACUAGCCUU,AC008412.8/62543-62444,62543-62444,0,99,AC008412.8/62543-62444
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2134,AC008427.9,1,sp|AC008427.9|AC008427 Homo sapiens chromosome 5 clone CTC-307M15; complete sequence.,1,154,125398,125299,37.62,GGCUGGUUCAAGUACACAGGUGUUUAUAACUAAUUGAUCACAGCCAGUUAUAGAUUUCUUUGUUCCCCCUCCACUCCUACUGCUUCACUCGACUAGCCUA,AC008427.9/125398-125299,125398-125299,0,99,AC008427.9/125398-125299
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2174,AC008482.5,1,sp|AC008482.5|AC008482 Homo sapiens chromosome 5 clone CTC-402A15; complete sequence.,0,155,139198,139297,29.84,GGUCUCUCUUGUAAACAGUGAUGUUUACAAGUAAUUGAUCACAACCUAUUACAGAUUUCUUUGUUCCUUCUCCACUCCCCUGCUUCACUUGACUAGCCUA,AC093270.3/15144-15243 AC008482.5/139198-139297,167198-167099 139198-139297,0,99,AC008482.5/139198-139297
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2174,AC008482.5,1,sp|AC008482.5|AC008482 Homo sapiens chromosome 5 clone CTC-402A15; complete sequence.,1,156,167198,167099,47.46,GGCUAGCCCAAGUGCAGUGGUGUCUACAACAAAUUGAUCACAACCAGUGGCAGAUUUCUUUGUUCCUUCUCUACUUCCAUUGCUUCACUUGACUAGCCUU,AC093270.3/43137-43038 AC008482.5/167198-167099,167198-167099 139198-139297,0,99,AC008482.5/167198-167099
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2238,AC008558.7,1,sp|AC008558.7|AC008558 Homo sapiens chromosome 5 clone CTC-531G16; complete sequence.,0,157,133189,133293,37.59,AGAUAAUCCAUGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCUUUUCUACUCUUUUUCCAUGCUCACUACUUCACUGGACUAGUCUU,AC008558.7/133189-133293,133189-133293,0,104,AC008558.7/133189-133293
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2313,AC008654.5,1,sp|AC008654.5|AC008654 Homo sapiens chromosome 5 clone CTB-191B18; complete sequence.,1,158,55274,55164,49.27,GGCUGGUUCAAAGGUAGAGAGUUAUCUCAAUGAUUUGUUGACUGUCAGUUACUGAUCAAACUCCUUGUUCUACCCUUUCCCCUCUUCUCACUACUGUAGUUGACUAGUCUU,AC022217.5/100070-99960 AC008654.5/55274-55164,55274-55164,0,110,AC008654.5/55274-55164
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2374,AC008733.9,1,sp|AC008733.9|AC008733 Homo sapiens chromosome 19 clone CTD-2525J15; complete sequence.,1,159,30801,30701,49.02,GGCUAGUCCAAGUGCAAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCAUUCUCACUGCUUUGCUUGAUUAGUCUU,AC009194.9/177772-177872 AC008733.9/30801-30701,30801-30701,0,100,AC008733.9/30801-30701
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2400,AC008760.7,1,sp|AC008760.7|AC008760 Homo sapiens chromosome 19 clone CTD-3128G10; complete sequence.,1,160,8733,8634,65.77,GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUGUUCACAACCAGUUACAUAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAUCCUA,AC008760.7/8733-8634 AC010503.8/136747-136648,8733-8634,0,99,AC008760.7/8733-8634
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2445,AC008819.7,1,sp|AC008819.7|AC008819 Homo sapiens chromosome 5 clone CTD-2126M20; complete sequence.,1,161,31353,31257,47.74,GGCUGGUCUGAGUGCAAUGGUGUUUAAACUAAUUGAUCACAAUGUUAUGGAUUUCUUUGUUCCUCCUCCACUCCCAUUGCUUCACUUGACUAGCCUU,AC034238.4/60537-60633 AC008819.7/31353-31257,31353-31257,0,96,AC008819.7/31353-31257
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2468,AC008847.7,1,sp|AC008847.7|AC008847 Homo sapiens chromosome 5 clone CTD-2168H23; complete sequence.,0,162,26156,26259,42.25,GGUUGGUCUGAAGGUAGCCAGUGAUCUCAAUGAAUUGUACAGUUACAGAUUGAACUCCUUGUUCUAUCCUUUCCCCCUUCUCACUACUGCACUUGACCAGAUUU,AC008847.7/26156-26259,26156-26259,0,103,AC008847.7/26156-26259
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2469,AC008848.9,1,sp|AC008848.9|AC008848 Homo sapiens chromosome 19 clone CTD-2168K3; complete sequence.,1,163,40171,40061,51.21,AGAUGGUCGGAAGGUAGUGAGUUAUCUCCAUUGAUUGUUCACAGUCAGUUAUGAAUUGAACUCCUUGUUCUAUUCUUCCCCCUCUUCUCACUACUGUACUUGUCUUUUUUU,AC008848.9/40171-40061,40171-40061,0,110,AC008848.9/40171-40061
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2470,AC008850.7,1,sp|AC008850.7|AC008850 Homo sapiens chromosome 5 clone CTD-2172I6; complete sequence.,0,164,84629,84728,48.07,AGUUGGUCCCAGUGCAGUGGUAUUUACAACUAAUGGAUCACAACCAGUUACAGGCUUAUUUGUUCCUUCUCCACCCUCAUUGCUUCACUUGACUAGCCUG,AC008850.7/84629-84728,84629-84728,0,99,AC008850.7/84629-84728
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2627,AC009053.7,1,sp|AC009053.7|AC009053 Homo sapiens chromosome 16 clone RP11-252A24; complete sequence.,0,165,321,419,46.77,GGCUGGUCCAAGUGCGGUGCUGUUUACAACUAAUUGAUCACAGCUACUUACAGAUUUAUUUGUUCUUCUACAUUCCUGUUGCUUCACUUGACUAGCCUU,AC009053.7/321-419 AC009153.10/89300-89398,321-419,0,98,AC009053.7/321-419
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2636,AC009065.8,1,sp|AC009065.8|AC009065 Homo sapiens chromosome 16 clone RP11-304L19; complete sequence.,1,166,145561,145464,36.02,AGCUGGUCCAAGCACAGUGGUGUUCACAACGAAUUGAUCACAGCCAGGUAGAAUUCUUCAUUCUUUCUCCAGUCCUACUGCUUUGCUUGACCAGCCUU,AC009065.8/145561-145464 L39891.1/7488-7391 U24498.1/4924-4827 AC005346.1/36901-36804,145561-145464,0,97,AC009065.8/145561-145464
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2647,AC009082.7,1,sp|AC009082.7|AC009082 Homo sapiens chromosome 16 clone RP11-354N7; complete sequence.,1,167,158555,158457,36.28,UCAUGCUCCAGUGCAGUGGUAUUUACAACUAAUUAAUCACAACCAGUUACAGAUUUCUUUGACCCCUUUCCGCUCCGACUGCUUCACUUGACUAGACUU,AC009082.7/158555-158457 AC009137.8/22767-22669,158555-158457,0,98,AC009082.7/158555-158457
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2673,AC009121.8,1,sp|AC009121.8|AC009121 Homo sapiens chromosome 16 clone RP11-485G7; complete sequence.,1,168,48936,48827,42.51,GUCUGGUCUGAAGGUAGUAAGUUAUCUCAGUCAAUUGUUCACAGGCAGUUACAGAUCCAACUCCUCAUUUUACUCUUUCCCCUUUCUCAUGACUGCACUUGACUAGUCUA,AC009121.8/48936-48827,48936-48827,0,109,AC009121.8/48936-48827
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2679,AC009131.6,1,sp|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10; complete sequence.,1,169,33568,33470,67.35,CGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACUAGUUACAGAUUAUUUGUUCCUUCUCCACUCUCACUGCUUCACUUGACUAGCUUU,AK022467.1/1744-1842 AC009131.6/33568-33470,33568-33470,0,98,AC009131.6/33568-33470
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2685,AC009137.8,1,sp|AC009137.8|AC009137 Homo sapiens chromosome 16 clone RP11-521L9; complete sequence.,1,170,22767,22669,36.28,UCAUGCUCCAGUGCAGUGGUAUUUACAACUAAUUAAUCACAACCAGUUACAGAUUUCUUUGACCCCUUUCCGCUCCGACUGCUUCACUUGACUAGACUU,AC009082.7/158555-158457 AC009137.8/22767-22669,22767-22669,0,98,AC009137.8/22767-22669
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2695,AC009153.10,1,sp|AC009153.10|AC009153 Homo sapiens chromosome 16 clone RP11-572F4; complete sequence.,0,171,89300,89398,46.77,GGCUGGUCCAAGUGCGGUGCUGUUUACAACUAAUUGAUCACAGCUACUUACAGAUUUAUUUGUUCUUCUACAUUCCUGUUGCUUCACUUGACUAGCCUU,AC009053.7/321-419 AC009153.10/89300-89398,89300-89398,0,98,AC009153.10/89300-89398
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2702,AC009162.11,1,sp|AC009162.11|AC009162 Homo sapiens chromosome 16 clone RP11-76H6; complete sequence.,0,172,68279,68388,44.73,GGCUGGUUCGAAGGUAGUGUGUUAUUUCAGUUGAUUGCUCACUGUCAGUUACAGGUUGAACUCCUUGUUCUACUCUGUCCCCCUUCUUGCCACUGCACUUGACUAGUUUA,AC099521.2/154824-154715 AC024903.17/154818-154709 AC009162.11/68279-68388,68279-68388,0,109,AC009162.11/68279-68388
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2720,AC009194.9,1,sp|AC009194.9|AC009194 Homo sapiens; clone RP11-44B13; complete sequence.,0,173,177772,177872,49.02,GGCUAGUCCAAGUGCAAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCAUUCUCACUGCUUUGCUUGAUUAGUCUU,AC009194.9/177772-177872 AC008733.9/30801-30701,177772-177872,0,100,AC009194.9/177772-177872
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2782,AC009309.4,1,sp|AC009309.4|AC009309 Homo sapiens BAC clone RP11-301O19 from 2; complete sequence.,0,174,60508,60616,36.88,UGCUCGUCCAAAGGUAGUGAGUUAGCUCAGUUGAUUGUUCACAGUCAGUUACGGAUCGAACAGUCUCGUUCUAGUCUUUCCUCCCUUACUAUUGCACUUGACUAGUCUU,AC009309.4/60508-60616,60508-60616,0,108,AC009309.4/60508-60616
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2822,AC009413.2,1,sp|AC009413.2|AC009413 Homo sapiens BAC clone RP11-459K11 from 2; complete sequence.,0,175,34105,34204,45.95,GGUUGGGCCGAGUGCAGUGGUGUUUACAAAUAAUUGAUCACAACCAGCUAUAGACUUCUUUGUUUCUUCUCUAUCUCCUUUGCUUCACUUGACUAGCCUU,AC009413.2/34105-34204,34105-34204,0,99,AC009413.2/34105-34204
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2855,AC009481.4,1,sp|AC009481.4|AC009481 Homo sapiens BAC clone RP11-303D3 from 1; complete sequence.,0,176,108478,108586,46.63,GGCUGGUCUGAGGGUAAUGAGUUAUUUCAAUUGAUUGUUCAGUCAGUUACAGAUCAAACUCCUUGUUCUACUCUUUGCCUGCUUCUCACUACUGCACAUGACUAGUAAA,AL158011.13/116659-116551 AC009481.4/108478-108586,108478-108586,0,108,AC009481.4/108478-108586
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2878,AC009506.5,1,sp|AC009506.5|AC009506 Homo sapiens BAC clone RP11-542H1 from 2; complete sequence.,1,177,89955,89855,48.34,GGCUGAUCUGAGAGCCCUGGUGUUUACACCUAAUUGUUCACAACCAGUGACAGAUUUCUUUGUUUUUUUCUCCACUCCCACUACUUUGCUUGACUAGCCUU,AC009506.5/89955-89855,89955-89855,0,100,AC009506.5/89955-89855
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2881,AC009509.7,1,sp|AC009509.7|AC009509 Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,178,166778,166888,41.20,GGCUGGUCUAAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUUCAGUUACAGAUUGAAUGCCUUGUUCUGCUCUUACCCCGUUCUCACUACUCGACUAGCCUA,AC009509.7/166778-166888,166778-166888,0,110,AC009509.7/166778-166888
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2890,AC009530.5,1,sp|AC009530.5|AC009530 Homo sapiens chromosome 7 clone RP11-302L6; complete sequence.,1,179,156180,156081,53.68,GUUUGGUCCAAGUGCCGAGGUGUUUACAACUAAUUGAUCUUAACCAUUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUACUUCACUUGACUAGCCUU,AC009530.5/156180-156081 AC078843.2/40953-40854,156180-156081,0,99,AC009530.5/156180-156081
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2912,AC009634.9,1,sp|AC009634.9|AC009634 Homo sapiens chromosome 8; clone RP11-413C18; complete sequence.,0,180,66449,66554,44.49,GACUGGUCUAAAGGUAGUGAGUUAUCACAAUUGACUGUUCACAGUUACAGAUGGAACUCCUUGUUCUACUACUUCCCCCUUCUCACUAAGUCACUUGACCGGUCAA,AC009634.9/66449-66554 AC110275.13/51693-51588,66449-66554,0,105,AC009634.9/66449-66554
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2948,AC009753.5,1,sp|AC009753.5|AC009753 Homo sapiens chromosome 15 clone RP11-416K5 map 15q21.1; complete sequence.,0,181,128802,128908,56.14,GGCUGGUCUGAAGGUAGUGAGUUACCUCAAUUGAUUGUUCACAGUUAUAGAUCAAACUUCUUGUUCUACUCUUUCCCCUCUUCUCACUACUGUACUUGACUAGUCUU,AC009753.5/128802-128908,128802-128908,0,106,AC009753.5/128802-128908
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2976,AC009812.17,1,sp|AC009812.17|AC009812 Homo sapiens chromosome 8; clone RP11-48B3; complete sequence.,0,182,89378,89470,28.49,GGCUGGUCCCAAGGUAGUGAAUUGUCUCAAUUGGUUAUUCACAGUUGGUUGCCCGUUGUACCACUCUUUCCCCACUUCCACUUGACUAGUCUU,AC009812.17/89378-89470 AJ507398.1/277-185,89378-89470,0,92,AC009812.17/89378-89470
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2980,AC009852.9,1,sp|AC009852.9|AC009852 Homo sapiens chromosome 15 clone RP11-402F9 map 15q15; complete sequence.,0,183,81472,81571,52.42,CACGGGUCCAAGUGCAGUGGUGUUUACAACUAAUUCAUCACAACAAGUUACAGAUUUCUUUGUUCCUUUUCCAUUCCCACUGCUUCACUUGACUAGCCCU,AC009852.9/81472-81571 AC068724.7/187216-187315,81472-81571,0,99,AC009852.9/81472-81571
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2992,AC009898.6,1,sp|AC009898.6|AC009898 Homo sapiens chromosome 8; clone RP11-138H14; complete sequence.,0,184,133396,133502,56.98,GGCUGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGCUACAGAUCAAAAUCCUUCUACUCUUUUCCCCUUCUCACUACGGUACUUGAAUAGCCUU,AC009898.6/133396-133502 AC107965.4/82139-82033,133396-133502,0,106,AC009898.6/133396-133502
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3069,AC010127.12,1,sp|AC010127.12|AC010127 Homo sapiens BAC clone RP11-2I8 from 2; complete sequence.,1,185,178264,178154,44.53,AACUGAUCCAAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUACGCUUUCCCCUCUUCUCACUACUGCUCUUGUCUAAAAAC,AC010127.12/178264-178154,178264-178154,0,110,AC010127.12/178264-178154
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3091,AC010150.3,1,sp|AC010150.3|AC010150 Homo sapiens BAC clone RP11-404P12 from 2; complete sequence.,0,186,97299,97409,36.43,GGCUGGUCCAAAGGCAGCUAGUUAUCUCAGCUGAUUGUUCACAGUCAGUCACGGAUCGAAGUCUUUGUUGAACUCUUUCCCUCCUUCUCAUUACUGUACUUGACCAGUCUA,AC010150.3/97299-97409,97299-97409,0,110,AC010150.3/97299-97409
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3104,AC010177.48,1,sp|AC010177.48|AC010177 Homo sapiens 12 BAC RP11-162N7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,187,10524,10635,48.91,GGCUGGUCAGAAGUUAGUGAGUUAUCUCAAUUGAUUGUUCACAGAUCAGUUCCAGACUGAACUCCUUAUUCUAUUCCUUCUCCUUUUCUCACUACUGUAUUUGACUAGUCUU,AC010177.48/10524-10635,10524-10635,0,111,AC010177.48/10524-10635
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3122,AC010205.6,1,sp|AC010205.6|AC010205 Homo sapiens 12 BAC RP11-285E23 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,188,47313,47421,59.06,GGCUGGUCCAAUGGUAGUCAGUUAUCUCAAUUGAUUGCUCACAGUCAGUUACAGGUCAAACUCCUUGUUCUUCUCUUUUCCCCCCUCACUACUGUACUUGGCUAGUCUA,AC010205.6/47313-47421 AC005409.1/5761-5869,47313-47421,0,108,AC010205.6/47313-47421
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3145,AC010240.7,1,sp|AC010240.7|AC010240 Homo sapiens chromosome 5 clone CTC-350I8; complete sequence.,0,189,49821,49931,39.82,GGCUGGUUCGAAGGUAGUCAGUUAUCUCAACUGAUUGUUCACAGUCAAGUUAUAGACUGAACCCCUUGCUCUAGUCUUUGACCCCUUCUCACUCCCACACUUGACUGCCUA,AC010240.7/49821-49931,49821-49931 97683-97584,0,110,AC010240.7/49821-49931
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3145,AC010240.7,1,sp|AC010240.7|AC010240 Homo sapiens chromosome 5 clone CTC-350I8; complete sequence.,1,190,97683,97584,56.13,GGCUGGUCCAAGUCCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCAUUGUUUCAUUUGGCUAGCCUA,AC113410.2/122105-122204 AC010240.7/97683-97584,49821-49931 97683-97584,0,99,AC010240.7/97683-97584
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3169,AC010271.8,1,sp|AC010271.8|AC010271 Homo sapiens chromosome 19 clone CTC-492K19; complete sequence.,0,191,37709,37819,56.56,GGCUGGUCCGAAGGUAGUGAAUUAUCUCAAUUGACUGUUCAUAGUCCUUUACAGAUGGAACUCCUUAUUCUACUCUUUCUCCUUUUCUCACUACUGCAGUUGACUAGUCUU,AC118344.2/26126-26016 AC010271.8/37709-37819,37709-37819 34543-34440,0,110,AC010271.8/37709-37819
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3169,AC010271.8,1,sp|AC010271.8|AC010271 Homo sapiens chromosome 19 clone CTC-492K19; complete sequence.,1,192,34543,34440,48.10,GCCUGGUCCCUAGGAACUGAUUGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCCUUCCUACUGCUUCACUUGACUAGCCUU,AC118344.2/29291-29394 AC010271.8/34543-34440,37709-37819 34543-34440,0,103,AC010271.8/34543-34440
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3185,AC010292.8,1,sp|AC010292.8|AC010292 Homo sapiens chromosome 5 clone CTB-131H22; complete sequence.,1,193,6520,6422,46.03,GGCUGCUCCGAGUGCAGUGGUGUUUACAACUAAUGCAUCACAACCAGUUACAGAAUUCUUUAUCCCUUCUCCAUGCCACUGCUUUCCUUGGCCAGCCUU,AC010292.8/6520-6422 AC094080.4/104198-104100,6520-6422,0,98,AC010292.8/6520-6422
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3206,AC010320.10,1,sp|AC010320.10|AC010320 Homo sapiens chromosome 19 clone CTD-2525I3; complete sequence.,1,194,102614,102505,57.02,GCCAGGUCCGAAGAUAGUCAGUUAUCUCAAUGGAUUGUUCACAGUCAGUUACAGAUGGAACUCCUUAUUCUACUCUUUCCCCCUUGUCACUACUGCACUUGAUUAGUCUU,AC010320.10/102614-102505,102614-102505,0,109,AC010320.10/102614-102505
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3252,AC010378.6,1,sp|AC010378.6|AC010378 Homo sapiens chromosome 5 clone CTD-2062A1; complete sequence.,0,195,77882,77981,40.16,GGCUAAUAUGAAUGAUGUGAUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUCCCUUUUCCGUGCCCACUGCUUCACCUGACUAGCCUU,AC010378.6/77882-77981,77882-77981,0,99,AC010378.6/77882-77981
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3268,AC010408.6,1,sp|AC010408.6|AC010408 Homo sapiens chromosome 5 clone CTD-2156G10; complete sequence.,0,196,9498,9597,41.27,GACUGCUCUGAGUGCAAUGGUGUUUACAACUAACCGAUCACAACCAGUUGCAGAUUUAUUUGUUCUUUUUCCACACUCACUGCUUCAGUUGACUAGCCUU,AC010408.6/9498-9597,9498-9597,0,99,AC010408.6/9498-9597
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3295,AC010443.8,1,sp|AC010443.8|AC010443 Homo sapiens chromosome 5 clone CTD-2231H16; complete sequence.,0,197,7637,7745,49.48,AGCUGGUCUGAAGGUAGUGAGUUAUCUCAUUUGAUUGUUCACACACAUUACAGAUCAAACACCUUAUUCUAUUCUUUCCCCCUUCUCACUACUACACUUGACUAGUCUU,AC010443.8/7637-7745,7637-7745,0,108,AC010443.8/7637-7745
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3307,AC010460.7,1,sp|AC010460.7|AC010460 Homo sapiens chromosome 5 clone CTD-2272G21; complete sequence.,0,198,73681,73786,33.19,GGCUUGUCCAGAGAUAACGCAUUAUCUCAAUUGAUUGUUCACAGUCACAGAUCGAACUUCUGUUCUACUCUUUUCCUCCUUCUCAUUAUUGCACUUGACUAGUCUU,AC010460.7/73681-73786 AC113422.2/70829-70724,73681-73786,0,105,AC010460.7/73681-73786
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3328,AC010488.7,1,sp|AC010488.7|AC010488 Homo sapiens chromosome 16 clone CTD-2332D4; complete sequence.,0,199,38265,38362,38.09,AGCUGGUCCAAGCACAGUGGUGUUCACAACGAAUUGAUCACAGCCAGGUAGAAUUCUUCAUUCUUUCUCCAGUUCCACUGCUUUGCUUGACCAGCCUU,AC138932.4/123611-123708 AC092137.3/112401-112498 AC138969.2/75195-75292 AC139256.5/3929-3832 AC010488.7/38265-38362 AC126755.3/38550-38453 AC136427.3/88784-88881 AC002039.1/20252-20155,38265-38362,0,97,AC010488.7/38265-38362
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3340,AC010503.8,1,sp|AC010503.8|AC010503 Homo sapiens chromosome 19 clone CTD-2396E7; complete sequence.,1,200,136747,136648,65.77,GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUGUUCACAACCAGUUACAUAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAUCCUA,AC008760.7/8733-8634 AC010503.8/136747-136648,136747-136648,0,99,AC010503.8/136747-136648
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3409,AC010619.7,1,sp|AC010619.7|AC010619 Homo sapiens chromosome 19 clone CTD-3148I10; complete sequence.,0,201,153843,153941,44.36,GGCUGGGCUGAGUGCAGCAAUGUUUACAACUAAUUGAUCACAACCAGCUACAGAUUUCUUUGUUCCUUUCCACUUCCACUCCUUCACUUGACCAGCCUU,AC010619.7/153843-153941,153843-153941,0,98,AC010619.7/153843-153941
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3440,AC010674.11,1,sp|AC010674.11|AC010674 Homo sapiens chromosome 15 clone RP11-430B1 map 15q21.1; complete sequence.,0,202,32974,33073,62.48,GGCUGAUCCGAGUGCAAUGGUGUUUACUACUAAUUGAUUACAACCAGUUACAGAUUUCUUUGUUUCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU,AC010674.11/32974-33073,32974-33073,0,99,AC010674.11/32974-33073
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3462,AC010731.3,1,sp|AC010731.3|AC010731 Homo sapiens BAC clone RP11-363B11 from 2; complete sequence.,1,203,110757,110639,44.03,GGCUUGUCCAAAGGUAGUGAGUUAUCUCAGUAGAUUGUUUAGUCAGUUACAGAUUGAAUACAGAUUGAACUUCUUGAUCUACUCUUUCCUGCUUCUCACUACUGCACUUGAAUAGUCUU,AC010731.3/110757-110639,110757-110639,0,118,AC010731.3/110757-110639
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3487,AC010799.15,1,sp|AC010799.15|AC010799 Homo sapiens chromosome 15; clone RP11-40J8; complete sequence.,0,204,101882,101984,45.20,GGCUGGUCUGAGUGCAGUGGGGUGUACAAGGAAUUGAUUACAAGCAGUUACAGGUUUCUUUGCUCCUUUUCCAUUUCCACUGCUGCUUCACUUCACUAGCCUU,AC019322.8/52850-52952 AC068448.10/115148-115046 AC111169.7/65905-66007 AC010799.15/101882-101984 AC021413.16/41842-41740,101882-101984,0,102,AC010799.15/101882-101984
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3493,AC010853.11,1,sp|AC010853.11|AC010853 Homo sapiens chromosome 18; clone RP11-349D12; complete sequence.,0,205,89287,89390,49.68,GGCUGGUCCUAAGGUAGUGUGUUAUCAAUUGAUCAAAGUCAGUUACAGAUCGAACUCCUUGAUCUACUCUUUCCUCCUGCUCACUACUGCACUUGACUAGUCCA,AF338230.1/7264-7367 AC010853.11/89287-89390,89287-89390,0,103,AC010853.11/89287-89390
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3552,AC010980.8,1,sp|AC010980.8|AC010980 Homo sapiens BAC clone RP11-384O8 from 2; complete sequence.,0,206,162137,162247,49.56,GUAGGGUCCAAAGGUAGUGAGUUAAGGCAAUUGAUUGUUCAUAGUCAGUUACAGAUUUAACUCCUUGUUCUACUCUUUCCUUUCUUCUCACUACUACGCAUGACUAGUUUU,AC010980.8/162137-162247,162137-162247,0,110,AC010980.8/162137-162247
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3566,AC011005.7,1,sp|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14; complete sequence.,0,207,90365,90475,59.51,GGCUGGUCCAAAGGGAGUGAGUUAUCUCAUUUGAUUGUUCACAGUCAGCUACAGAUCCAACUCCUUGUUCUACUCUUUCCCCCCUUCUCACUGCUGCACUUGACUAGACUA,AC011005.7/90365-90475 AC083866.2/14241-14351,90365-90475,0,110,AC011005.7/90365-90475
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3609,AC011230.3,1,sp|AC011230.3|AC011230 Homo sapiens BAC clone CTD-2324K8 from 7; complete sequence.,1,208,23513,23407,45.50,GGCUGGUCUGAAGGCAGUGAGUUAUCUCAAUUGAUUGUUCAUAGUUACAGAUUGAACUUGUUGUUCCACUCUUCCCUGCCUUCUCUCUACUGCACUUGACUAGUCUA,AF265342.4/25724-25830 AC011230.3/23513-23407,23513-23407,0,106,AC011230.3/23513-23407
./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00019.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3693,AC011365.5,1,sp|AC011365.5|AC011365 Homo sapiens chromosome 5 clone CTC-558O2; complete sequence.,1,209,2501,2391,55.08,GGCUGGUUCAAAGGUAGUGAGUUCUCUCAAUGGAUUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUACUCUUUCCUCCUUUUUCACUACUGUACUCAACUAGUCUU,AL122074.1/845-735 AC