Params: ./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: xmen.cs.washington.edu pid: 16041 ----cmFile: Rfam/cm/RF00019.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43618,sp|L41730.1|CECSCR Caenorhabditis elegans ceY small cytoplasmic RNA gene. ----isReversed: 0 ----hitSequence: GCUCGGUCCGAGUUUCAUGGUCUCCAAUGUGUGUGUGUGUGUGUUUUCUUUAGGAACCUCGGUUCCAACCUCAUCUUGACCUUGAAACUACUUUGACCGCUCCU hit 0 : 373 476 (fwd) 27.91 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G::::GUCCG ::::U::+ +++++CAA U+ UG+ U ++ U+ UUUC UA 373 GCUCGGUCCG---AGUUUCAUGGUCUCCAA-UGUGUGUGUGUGUGUGUUUUCUUUAGgaa 428 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + C ++U C+ +UCU+ +CC ::A:::: + UUGAC::::C U 429 cCUCGGUUCCAaccucAUCUUGACCUUGAAACUACU--UUGACCGCUCCU 476 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44221,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1, complete sequence. ----isReversed: 0 ----hitSequence: GCUCGGUCCGAGUUUCAUGGUCUCCAAUGUGUGUGUGUGUGUGUUUUCUUUAGGAACCUCGGUUCCAACCUCAUCUUGACCUUGAAACUACUUUGACCGCUCCU hit 1 : 35336 35439 (fwd) 27.91 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G::::GUCCG ::::U::+ +++++CAA U+ UG+ U ++ U+ UUUC UA 35336 GCUCGGUCCG---AGUUUCAUGGUCUCCAA-UGUGUGUGUGUGUGUGUUUUCUUUAGgaa 35391 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + C ++U C+ +UCU+ +CC ::A:::: + UUGAC::::C U 35392 cCUCGGUUCCAaccucAUCUUGACCUUGAAACUACU--UUGACCGCUCCU 35439 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #2599,sp|AB054536.1|AB054536 Pan troglodytes LTB, TNF alpha, LTA, IKBL, ATP6G, BAT1, Patr-MIC and Patr-B genes, complete cds. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGUUUACAGCUAAUUGAUCACAACCAGUUAUAGAUGUCUUUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 2 : 92601 92697 (fwd) 46.47 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA :AGUG UUA+ C UAAUUGAU+ACA +AGUU+ AG++ UC 92601 GGCUGGUCUGAGUGCAGUGU-UUACAGC---UAAUUGAUCACAACCAGUUAUAGAUGUCU 92656 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCU+C+C+C CACU: U CACUUGACUAGCCUU 92657 UUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 92697 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #5706,sp|AB100082.1|AB100082 Pan troglodytes DNA, major histocompatibility complex class I region, section 1/6. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGUUUACAGCUAAUUGAUCACAACCAGUUAUAGAUGUCUUUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 3 : 92601 92697 (fwd) 46.47 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA :AGUG UUA+ C UAAUUGAU+ACA +AGUU+ AG++ UC 92601 GGCUGGUCUGAGUGCAGUGU-UUACAGC---UAAUUGAUCACAACCAGUUAUAGAUGUCU 92656 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCU+C+C+C CACU: U CACUUGACUAGCCUU 92657 UUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 92697 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #5708,sp|AB100084.1|AB100084 Pan troglodytes DNA, major histocompatibility complex class I region, section 3/6. ----isReversed: 0 ----hitSequence: GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGACUAGUCUU hit 4 : 179116 179224 (fwd) 56.58 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU GUCC AAG :AGUG:GUUAUC CAAUU+AUUG+U+A GU+AGUU+CAG+++ 179116 GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAGUUACAGAUUgaa 179173 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU: UGCACUUGAC AG:CUU 179174 cUCCUUGUUCUacucuuUACCUACUUCUCACUAUUGCACUUGACUAGUCUU 179224 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #5711,sp|AB100087.1|AB100087 Pan troglodytes DNA, major histocompatibility complex class I region, section 6/6. ----isReversed: 1 ----hitSequence: GGCUGGUCAGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCUUUUUUCCUUCUCCGCUCCCACUGCUUCACUUGACUAGCCUU hit 5 : 210616 210517 (rev) 69.21 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA GUAGUGG U++U+ACAA+UAAUUGAU+ACA +A UU+CAG+++UC 39986 GGCUGGUCAGAGUGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCU 40044 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+UUC UUCUCC C+CCCACUGCU CACUUGACUAGCCUU 40045 UUUUUCCUUCUCCGCUCCCACUGCUUCACUUGACUAGCCUU 40085 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7095,sp|AC091754.4|AC091754 Papio anubis clone RP41-384C24, complete sequence. ----isReversed: 1 ----hitSequence: AACUGGCCCGAGUGCAGUGGUGGUUACACUUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCCUCUCCACUUCCACUGCUUCACUGUAAGAGCCUA hit 6 : 85527 85428 (rev) 38.01 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 ::CU : CGA G:AGUGG U+ U+ACA UUAAUUGAU+ACA +AGUU+CAG+++U 106747 AACUGGCCCGAGUGCAGUGG-UGGUUACACUUAAUUGAUCACAACCAGUUACAGAUUUUU 106805 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UCUCC+C+ CCACU:CU CACU : AG::U 106806 UUGUUCCCUCUCCACUUCCACUGCUUCACUGUAAGAGCCUA 106846 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7128,sp|AC093135.2|AC093135 Pan troglodytes clone RP43-100O17, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 7 : 10087 9988 (rev) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 162019 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 162077 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 162078 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 162118 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7176,sp|AC099742.2|AC099742 Papio anubis clone RP41-167P22, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCCAAGUGCAGUGCUGUUUACAGCUAAUUGAUUACAACCAGUUACAGAUUUCUUCCUUCUCCAUUCCCACUACUUCCCUUGAUUAGUCUU hit 8 : 102210 102305 (fwd) 43.65 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUG :CC A G AGUG U++U+ACA +UAAUUGAUUACA +AGUU+CAG+++ C 102210 GGCUGGCCCAAGUGCAGUGC-UGUUUACAGCUAAUUGAUUACAACCAGUUACAGAUU-UC 102267 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU C UUCUCC+ +C CACU CU C+CUUG: UAG:CUU 102268 UU--CC-UUCUCCAUUCCCACUACUUCCCUUGAUUAGUCUU 102305 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7202,sp|AC120838.9|AC120838 Pan troglodytes clone ch251-239a19, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAGUGGGGUGUACAAGGAAUUGAUUACAACCAGUUACAGGUUUCUUUGCUCCUUUUCCAUUUCCACUGCUGCUUCACUUGACUAGCCUU hit 9 : 99869 99767 (rev) 48.48 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA G:AGUGGG U U ACAA AAUUGAUUACA +AGUU+CAG ++UC 50424 GGCUGGUCUGAGUGCAGUGGGGUGU-ACAAGGAAUUGAUUACAACCAGUUACAGGUUUCU 50482 _________________>>>>>>>---...---->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 UUG UC UU UCC+ + CCACU:CUGC ACUUGACUAGCCUU 50483 UUGCUCCUUUUCCAUUUCCACUGCUGCuucACUUGACUAGCCUU 50526 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7256,sp|AC128639.13|AC128639 Papio anubis clone rp41-2d18, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAAGGUAGUUAGUUGAGUUAUCUCAGUUGGUUGUUCAUAGGCAGUAACAGAUCAAACUCCUUAUUCUUCUCUGUCCCCUCUUCUCAAUACUGCACUUGACUAGUCUA hit 10 : 157491 157376 (rev) 35.13 bits <<<<<<<<-----<<<.....<<<<___________________________________ 1 ggcugGUcCGAAggua.....gUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAgu 55 G:CUGGUCC AAGG:A :UG:GUUAUC CA UU+ UUG+U+A+AG +AGU +CAG+ 15841 GGCUGGUCCAAAGGUAguuagUUGAGUUAUCUCAGUUGGUUGUUCAUAGGCAGUAACAGA 15900 __....__________......__________>>>>>>>------->>>>>>>>:: 56 Aa....UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + UCCUU UUCU U C+C C +C:CA:U:CUGCACUUGACUAG:CU 15901 UCaaacUCCUUAUUCUucucugUCCCCUCUUCUCAAUACUGCACUUGACUAGUCUA 15956 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7290,sp|AC140949.1|AC140949 Pan troglodytes BAC clone RP43-168N2 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUAUUCUUCCCCCCGCUUCUCACUGCUGCACUUGACUAGUCUG hit 11 : 15072 14961 (rev) 63.74 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU: GAAGGUAGUG:GUUAUC AAUU+AUUG+U+ACAGU+AGUU+CAG++ 178706 GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCACAGUCAGUUACAGAUCgaa 178765 .__________.__________......>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.UUCUccCCCC......ccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUCU+CCCCC :CACUGCUGCACUU:ACUAG:CU 178766 cUCCUUGUUCUaUUCUUCCCCCcgcuucUCACUGCUGCACUUGACUAGUCUG 178817 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7315,sp|AC142303.1|AC142303 Pan troglodytes chromosome 7 clone RP43-129L21, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 12 : 110627 110528 (rev) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 89044 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 89102 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 89103 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 89143 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7339,sp|AC142329.1|AC142329 Pan troglodytes chromosome UNK clone RP43-25D8, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUAAUCACAACCAUUUACAGAUUUAGUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 13 : 23506 23605 (fwd) 65.85 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:AGUGG U++U+ACAA+UAAUU AU+ACA +A UU+CAG+++U 23506 GGCUGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUAAUCACAACCAUUUACAGAUUUAG 23564 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUGACUAGCCUU 23565 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 23605 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7339,sp|AC142329.1|AC142329 Pan troglodytes chromosome UNK clone RP43-25D8, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCUGAGUGCAGUGGUGUUUACAACGAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCCU hit 14 : 168852 168753 (rev) 65.69 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG:C GA G:AGUGG U++U+ACAA+ AAUUGAU+ACA +AGUU+CAG+++UC 19792 GGCUGGCCUGAGUGCAGUGG-UGUUUACAACGAAUUGAUCACAACCAGUUACAGAUUUCU 19850 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUG:CUAGCC U 19851 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCCU 19891 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7372,sp|AC144428.1|AC144428 Pan troglodytes chromosome 7 clone RP43-2C19, complete sequence. ----isReversed: 1 ----hitSequence: GGUUAGCCCGAGUGCUAUAGUAUUUACAAUGAAUUGAUCACAACCAGUUACAGAUUUCUUUAUCACAUCUUCACUCCCACUGCUUCACUUGACUAGCCUU hit 15 : 155286 155187 (rev) 51.52 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:U:G:CCGA G:+:U:G U +U+ACAAU AAUUGAU+ACA +AGUU+CAG+++ C 52898 GGUUAGCCCGAGUGCUAUAG-UAUUUACAAUGAAUUGAUCACAACCAGUUACAGAUU-UC 52955 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+ UC+ +UCU+C+C+CC:A:+:CU CACUUG:C:A:CCUU 52956 UUUAUCAcAUCUUCACUCCCACUGCUUCACUUGACUAGCCUU 52997 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #41220,sp|U94704.1|GSU94704 Galago senegalensis Y5 small cytoplasmic RNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AGUUGGUCCGAAGGUUGUGGGUUAUCGUUAUUGAUUUAACAUUGUCUCCCCCCACACCCCCUCUUGACUAGCUUU hit 16 : 1 75 (fwd) 35.31 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G:UGGUCCGAAGG::GUGGGUUAUC UUA+ U+ UUU AA C 1 AGUUGGUCCGAAGGUUGUGGGUUAUCG-----------UUAU---UGAUUU----AA-CA 41 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +UCU CCCCCCAC::C +C CUUGACUA:C:UU 42 UU-GUCU------CCCCCCACACCCCCUCUUGACUAGCUUU 75 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #41221,sp|U94705.1|GSU94705 Galago senegalensis Y5 small cytoplasmic RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AGUUGGUCCGAAGGUUGUGGGUUAUCGUUAUUGAUUUAAUAUUGUCUCCCCCCACACCCCCUCUUGACUAGCUUU hit 17 : 86 160 (fwd) 34.05 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G:UGGUCCGAAGG::GUGGGUUAUC UUA+ U+ UUU AA 86 AGUUGGUCCGAAGGUUGUGGGUUAUCG-----------UUAU---UGAUUU----AA-UA 126 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +UCU CCCCCCAC::C +C CUUGACUA:C:UU 127 UU-GUCU------CCCCCCACACCCCCUCUUGACUAGCUUU 160 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6760,sp|AC124787.5|AC124787 Mus musculus, clone RP24-395J18, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUACAAAGGGAGUGAGUUUUCUCAAUUGCUUGUUCACAGUCAGCUAUAGAUCGAACUGCUGGUCUGUGCUUUCCCCUCUUCUCACUACUGCACUUGACUACAGAU hit 18 : 105946 106055 (fwd) 37.00 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + UGGU:C AAGG AGUG:GUU+UC CAAUU+ UUG+U+ACAGU+AG U+ AG++ 105946 GGCUGGUACAAAGGGAGUGAGUUUUCUCAAUUGCUUGUUCACAGUCAGCUAUAGAUCgaa 106005 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CU+ +UCU U C+C C +C:CACU CUGCACUU:ACUA + U 106006 cUGCUG-GUCUgugcuuUCCCCUCUUCUCACUACUGCACUUGACUACAGAU 106055 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7305,sp|AC130205.3|AC130205 Mus musculus chromosome 1 clone RP24-430C1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUUGUCUAAAGAUAGUGAGUUAUAUCACCUGAUUGUUCACAGUCACUCACAGAUUGAAUUCCUAUUCUAUACAUUCCCUCCUUCUCACUACUCCAGUUGAUUAGAGAU hit 19 : 150414 150305 (rev) 28.06 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + CU UC AAG::AGUG:GUUAU CA +U+AUUG+U+ACAGU+A U +CAG+++ 15514 GGCUUGUCUAAAGAUAGUGAGUUAUAUCACCUGAUUGUUCACAGUCACUCACAGAUUgaa 15573 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU UUCU U C++CC +C:CACU::U+CA UUGA AG + U 15574 uUCCUA-UUCUauacauUCCCUCCUUCUCACUACUCCAGUUGAUUAGAGAU 15623 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24162,sp|AL606480.11|AL606480 Mouse DNA sequence from clone RP23-112C19 on chromosome 11 ----isReversed: 0 ----hitSequence: GGUUGAUCUGAAGAUAGUGAGUUAUCUCAACUGAUUGUUCAAAGUCAGUUCCAGAUUGCAUCCCUAUUCUACACUCCACACCCCCCUUUCCUGUUACUGUACUUAACCAGCCGU hit 20 : 12698 12811 (fwd) 29.02 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 GG:U::U GAAG:UAG :GUUAUC CAA+U+AUUG+U+A AGU+AGUU CAG+++ 12698 GGUUGAUCUGAAGAUAGUGAGUUAUCUCAACUGAUUGUUCAAAGUCAGUUCCAGAUUgca 12757 __________.......__________>>>>>>>---...---->>>>>>>>:: 58 UCcUUgUUCU.......UUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 UCC U UUCU + +CCCCC : CUG:U C ACUU A::A:CC U 12758 UCCCUAUUCUacacuccACACCCCCCUUUCCUGUUACuguACUUAACCAGCCGU 12811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24838,sp|AL669834.10|AL669834 Mouse DNA sequence from clone RP23-114O4 on chromosome 4 ----isReversed: 0 ----hitSequence: GGCUGGGCUGAGUACAGUGGCUGUUUCCAGCUAAUUGUUCACAACUAAUUACAGAUUUUUUUUUGUUCCUUCUCCAUUCCCACUGUUUCACCAGAACAGGUUG hit 21 : 21203 21305 (fwd) 35.92 bits <<<<<<<<-----<<<<<<<_____________________________________.._ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa..U 58 ++CU: :C GA ::AGUGG U++U++CA +UAAUUG+U+ACA UA UU+CAG+++ U 21203 GGCUGGGCUGAGUACAGUGGCUGUUUCCAGCUAAUUGUUCACAACUAAUUACAGAUUuuU 21262 ___________________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +CCCACU::U CAC G: :AG++U 21263 UUUUGUUCCUUCUCCAUUCCCACUGUUUCACCAGAACAGGUUG 21305 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24939,sp|AL670035.15|AL670035 Mouse DNA sequence from clone RP23-295C20 on chromosome 4 ----isReversed: 0 ----hitSequence: AGCUGAUCCAAAGGUAGUGAGUUAUCUCAAUGGAUGGUUCACAAUCAGUUACAGAUUAAACUUCCUUCCUCCUCACUGCUGCACUUGACUAGAGAU hit 22 : 96985 97080 (fwd) 46.46 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : CUG:UCC AAGGUAGUG:GUUAUC CAAU +AU G+U+ACA U+AGUU+CAG+++ 96985 AGCUGAUCCAAAGGUAGUGAGUUAUCUCAAUGGAUGGUUCACAAUCAGUUACAGAUU-AA 97043 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUC U+CC CC:CACUGCUGCACUUGA:UAG : U 97044 AC-UUCC---UUCCUCCUCACUGCUGCACUUGACUAGAGAU 97080 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25009,sp|AL671140.12|AL671140 Mouse DNA sequence from clone RP23-80N18 on chromosome 4 ----isReversed: 0 ----hitSequence: AGCUGGUCCUAAGGUAGUGCGUUGUCUCAAUUGAUUGCUCAGUCAGUUACACAUUGAACUCCUUCCUACUCUAUGCUUUCCCUCCUUCUCACUACUGCGCUUGACUAGAGCU hit 23 : 20804 20915 (fwd) 39.98 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 : CUGGUCC AAGG:AGUG GUU UC CAAUU+AUUG U+A GU+AGUU+CA++++ 20804 AGCUGGUCCUAAGGUAGUGCGUUGUCUCAAUUGAUUGCUCA--GUCAGUUACACAUUgaa 20861 .....__________......__________>>>>>>>------->>>>>>>>:: 58 .....UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU UCU U C++CC +C CACU:CUGC CUUGACUAG : U 20862 cuccuUCCUA-CUCUaugcuuUCCCUCCUUCUCACUACUGCGCUUGACUAGAGCU 20915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #54168,sp|U34825.1|MM34825 Mus musculus Y1 scRNA (mY1) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUGUUCUACACUUUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU hit 24 : 325 434 (fwd) 75.45 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGAAGG:AGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG+++ 325 GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUgaa 384 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+ UUCU U C+CCC +C:CACU:CUGCACUUGACUAG:CUU 385 cUCCUG-UUCUacacuuUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU 434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #54169,sp|U34826.1|MM34826 Mus musculus Y3 scRNA (mY3) gene. ----isReversed: 0 ----hitSequence: GGUUGGUCCGAGAGUAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU hit 25 : 282 381 (fwd) 73.46 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:U:GUCCGA +GUAGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 282 GGUUGGUCCGAGAGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 340 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC C+CCCACUGCU CACUUGAC:A:CCUU 341 UUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU 381 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #54170,sp|U34827.1|MM34827 Mus musculus Y3 scRNA (mY3) RNA, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGUCCGAGAGUAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU hit 26 : 1 100 (fwd) 73.46 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:U:GUCCGA +GUAGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 1 GGUUGGUCCGAGAGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 59 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC C+CCCACUGCU CACUUGAC:A:CCUU 60 UUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU 100 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #54171,sp|U34828.1|MM34828 Mus musculus Y1 scRNA (mY1) RNA, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUGUUCUACACUUUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU hit 27 : 1 110 (fwd) 75.45 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGAAGG:AGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG+++ 1 GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUgaa 60 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+ UUCU U C+CCC +C:CACU:CUGCACUUGACUAG:CUU 61 cUCCUG-UUCUacacuuUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU 110 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #68868,sp|X13624.1|MMROMY1P Mouse my1 pseudogene for small cytoplasmic Ro RNA ----isReversed: 0 ----hitSequence: GGCUGGCCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUGUUUUACGCUUUGCCCCCUCUCACUCCUGCACUUGAACUCGUCUA hit 28 : 135 244 (fwd) 57.22 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C GG:CCGAAGG:AGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG+++ 135 GGCUGGCCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUgaa 194 .__________....__________>>>>>>>------->>.>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgA.CuagccUU 101 UCCU++UU + UU +CCCC+C:CACU:CUGCACUUG: CU G:CU 195 cUCCUGUUUUAcgcuUUGCCCCCUCUCACUCCUGCACUUGAaCUCGUCUA 244 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21713,sp|X69719.1|RNY1A R.norvegicus gene for Y1 small cytoplasmic RNA ----isReversed: 0 ----hitSequence: GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUGAACUCCUGUUCUAUACUUUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU hit 29 : 5 114 (fwd) 50.76 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +++UGGU: GAAGG+AGUG:GUUAUC CAAUU+AUU +U+ACAGU+ G U+CAG+++ 5 GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUgaa 64 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+ UUCU UU +C C +C:CACU+CUGCAC U:ACUA+++ U 65 cUCCUG-UUCUauacuuUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU 114 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21714,sp|L07871.1|RNY1RNAX Rat rinucleoprotein (Y1) gene. ----isReversed: 0 ----hitSequence: GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUGAACUCCUGUUCUAUACUUUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU hit 30 : 5 114 (fwd) 50.76 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +++UGGU: GAAGG+AGUG:GUUAUC CAAUU+AUU +U+ACAGU+ G U+CAG+++ 5 GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUgaa 64 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+ UUCU UU +C C +C:CACU+CUGCAC U:ACUA+++ U 65 cUCCUG-UUCUauacuuUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU 114 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43762,sp|L27530.1|IIY3A Iguana small cytoplasmic RNA (Y3). ----isReversed: 0 ----hitSequence: GGCUGGUCCGAUUGCAGUGGUACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCUUUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCU hit 31 : 1 99 (fwd) 69.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCCGA G:AGUGG U U+A AAUUAAUUGAU+ACAGU+AGUU+CAG ++UC 1 GGCUGGUCCGAUUGCAGUGG-UACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCU 59 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUUCUCC+C+CCCACU:CU CACUUGACUAG:CU 60 UUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCU- 99 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43763,sp|L27532.1|IIY3C Iguana small cytoplasmic RNA (Y3) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAUUGCAGUGGUACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCUUUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCUU hit 32 : 94 193 (fwd) 74.04 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCCGA G:AGUGG U U+A AAUUAAUUGAU+ACAGU+AGUU+CAG ++UC 94 GGCUGGUCCGAUUGCAGUGG-UACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCU 152 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUUCUCC+C+CCCACU:CU CACUUGACUAG:CUU 153 UUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCUU 193 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43764,sp|L27534.1|IIY4A Iguana small cytoplasmic RNA (Y4) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAAGUAGUGGGUUAUCACAGAAAUUAUUACAGUUAGUUUCACUAACCUUUCUAAGUUCCACCCCACUGCUAACCUUGACUGGUCUU hit 33 : 95 190 (fwd) 69.91 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:C:GGUCCGAA+GUAGUGGGUUAUCACA AA U AUUACAGUUAGUUUCA+UAA CC 95 GGCUGGUCCGAAAGUAGUGGGUUAUCACA--GAAAUUAUUACAGUUAGUUUCACUAA-CC 151 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+ U++ U+CC CCCCACUGCU ++CUUGACU:G:CUU 152 UUUCUAAg---UUCCACCCCACUGCUAACCUUGACUGGUCUU 190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43765,sp|L27536.1|IIY4C Iguana small cytoplasmic RNA (Y4) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAAGUAGUGGGUUAUCACAGAAAUUAUUACAGUUAGUUUCACUAACCUUUCUAAGUUCCACCCCACUGCUAACCUUGACUGGUCUU hit 34 : 95 190 (fwd) 69.91 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:C:GGUCCGAA+GUAGUGGGUUAUCACA AA U AUUACAGUUAGUUUCA+UAA CC 95 GGCUGGUCCGAAAGUAGUGGGUUAUCACA--GAAAUUAUUACAGUUAGUUUCACUAA-CC 151 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+ U++ U+CC CCCCACUGCU ++CUUGACU:G:CUU 152 UUUCUAAg---UUCCACCCCACUGCUAACCUUGACUGGUCUU 190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43766,sp|L27537.1|IIY4D Iguana small cytoplasmic RNA (Y4). ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAAGUAGUGGGUUAUCACAGAAAUUAUUACAGUUAGUUUCACUAACCUUUCUAAGUUCCACCCCACUGCUAACCUUGACUGGUCUU hit 35 : 1 96 (fwd) 69.91 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:C:GGUCCGAA+GUAGUGGGUUAUCACA AA U AUUACAGUUAGUUUCA+UAA CC 1 GGCUGGUCCGAAAGUAGUGGGUUAUCACA--GAAAUUAUUACAGUUAGUUUCACUAA-CC 57 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+ U++ U+CC CCCCACUGCU ++CUUGACU:G:CUU 58 UUUCUAAg---UUCCACCCCACUGCUAACCUUGACUGGUCUU 96 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #51910,sp|L15431.1|XLSCRNAY3 Xenopus laevis (clone pB1) small cytoplasmic RNA (Y3) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGCAGUGGUUGCCACCAUUAAUUGAUUACAGACAGUUACAGACUUCUUUGUUCUUCUCCCCUCCCACUGCUUCCCUUGACUAGCCUU hit 36 : 36 134 (fwd) 76.39 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCCGAAGG:AGUGG UU +CAC AUUAAUUGAUUACAG +AGUU+CAG+ +UC 36 GGCUGGUCCGAAGGCAGUGG-UUGCCACCAUUAAUUGAUUACAGACAGUUACAGACUUCU 94 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCCCC+CCCACU:CU C+CUUGACUAGCCUU 95 UUGUUC-UUCUCCCCUCCCACUGCUUCCCUUGACUAGCCUU 134 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #51911,sp|L15432.1|XLSCRNAY4 Xenopus laevis (clone pB2) small cytoplasmic RNA (xY4) gene. ----isReversed: 0 ----hitSequence: GGUUGGUCCGAAAGUUGUGGGUUAUCCAAAUCAUUCAGUUAGUAUCACUAACCUUCUAUUUCACCCCACUGCUGACCUUGACUGGCCAA hit 37 : 36 124 (fwd) 47.34 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG::GGUCCGAA+GU+GUGGGUUAUC+ AA U AUU GUUAGU UCA+UAA CC 36 GGUUGGUCCGAAAGUUGUGGGUUAUCC-----AAAUCAUUCA-GUUAGUAUCACUAA-CC 88 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU U+ U+ C CCCCAC+GCUG++CUUGACU::CC 89 UU-CUA----UUUCACCCCACUGCUGACCUUGACUGGCCAA 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #20,sp|AB000878.1|AB000878 Homo sapiens genomic DNA for centromeric end of MHC class I region on chromosome 6, cosmid clone: TY2A9. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGUUUUUGUUUCAUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 38 : 14612 14711 (fwd) 59.37 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GGCUGGUC GA :AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+ AG++ U 14612 GGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGuUU 14670 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC +UCU+C+C+CCCACU: U CACUUGACUAGCCUU 14671 UUGUUUC-AUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 14711 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #23,sp|AB000882.1|AB000882 Homo sapiens genomic DNA for centromeric end of MHC class I region on chromosome 6. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGUUUUUGUUUCAUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 39 : 67188 67287 (fwd) 59.37 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GGCUGGUC GA :AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+ AG++ U 67188 GGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGuUU 67246 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC +UCU+C+C+CCCACU: U CACUUGACUAGCCUU 67247 UUGUUUC-AUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 67287 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2352,sp|AB023051.1|AB023051 Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:876L4. ----isReversed: 0 ----hitSequence: GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU hit 40 : 68790 68898 (fwd) 52.53 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU UCC AAG :AGUG:GUUAUC CAAUU+AUUG+U+A GU+AGUU+CAG+++ 68790 GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAGUUACAGAUUgaa 68847 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU: UGCACUUGA AG:CUU 68848 cUCCUUGUUCUacucuuUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU 68898 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2359,sp|AB023058.1|AB023058 Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:950A3. ----isReversed: 1 ----hitSequence: GGCUGGUCAGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCUUUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU hit 41 : 74394 74295 (rev) 68.06 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA GUAGUGG U++U+ACAA+UAAUUGAU+ACA +A UU+CAG+++UC 40057 GGCUGGUCAGAGUGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCU 40115 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+UUC UUCUCC C+CCCACUGCU ACUUGACUAGCCUU 40116 UUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU 40156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2766,sp|AB026898.1|AB026898 Homo sapiens DNA, DLEC1 to ORCTL4 gene region, section 1/2 (DLEC1, ORCTL3, ORCTL4 genes, complete cds). ----isReversed: 1 ----hitSequence: GGCUGGUCCAGAGGUAGUGAGUUAUCUUGAUUGUUCAGUUACAGAUCAAACUCCAUGUUCUACUCUUUACCCCCUUCUUACUUCUACACUUGACUAGUCAA hit 42 : 73128 73028 (rev) 30.80 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCC AGG+AGU :GUUAUC U+AUUG+U +AGUU+CAG++ 196873 GGCUGGUCCAGAGGUAGUGAGUUAUCU----UGAUUGUU------CAGUUACAGAUCaaa 196922 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCC UGUUCU U C+CCC +C: ACU+CU CACUUGACUAG:C 196923 cUCCAUGUUCUacucuuUACCCCCUUCUUACUUCUACACUUGACUAGUCAA 196973 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #4334,sp|AB043547.1|AB043547 Homo sapiens gene for SMAD4, partial cds. ----isReversed: 1 ----hitSequence: UACUGGUCCAAAGGUAAUGAUUAACCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUCAGCUCCUUGUUCUACUCUUUACCCCCUUCUCACUAUUGUGCUUGACUAGUCAA hit 43 : 48716 48606 (rev) 44.05 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAG :A:UG:+U A+C CAAU +AUUG+U+ACAGU+AGUU+CAG+++ 112105 UACUGGUCCAAAGGUAAUGAUUAACCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUcag 112164 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CA:U: UG CUUGACUAG:: 112165 cUCCUUGUUCUacucuuUACCCCCUUCUCACUAUUGUGCUUGACUAGUCAA 112215 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #5908,sp|AB063285.1|AB063285 Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds. ----isReversed: 0 ----hitSequence: GGCUAGUCUGAAGGUAGCAAGUUAUCUCAAUUGAUUGUUCAUGGUCAGUUACAGAUUGAACUCUUUGUUUUAUUCUUUUCCCCCUUCUCACUACUGCAUUUGACUAAUCAU hit 44 : 8335 8445 (fwd) 52.65 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:+U:GUC GAAGG:AG:::GUUAUC CAAUU+AUUG+U+A++GU+AGUU+CAG+++ 8335 GGCUAGUCUGAAGGUAGCAAGUUAUCUCAAUUGAUUGUUCAUGGUCAGUUACAGAUUgaa 8394 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUU U UUC+CCC +C:::CU:CUGCA UUGAC:A+:C U 8395 cUCUUUGUUUUauucuuUUCCCCCUUCUCACUACUGCAUUUGACUAAUCAU 8445 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #8359,sp|AB088101.1|AB088101 Homo sapiens PRG1, FLOT1 genes for immediate early response 3, flotillin 1, complete cds. ----isReversed: 0 ----hitSequence: GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU hit 45 : 9930 10038 (fwd) 52.53 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU UCC AAG :AGUG:GUUAUC CAAUU+AUUG+U+A GU+AGUU+CAG+++ 9930 GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAGUUACAGAUUgaa 9987 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU: UGCACUUGA AG:CUU 9988 cUCCUUGUUCUacucuuUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU 10038 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9462,sp|AC002407.1|AC002407 Human Chromosome X, complete sequence. ----isReversed: 1 ----hitSequence: UGCUGGCCCUAAGGUAGUGAGUUACCUCAAUUGCUUGUUCACCAUCAGUUACAGGUCAAACUCCUUGUUCUACUCUUUCCACCCUUCUCACUACUGCACUGGACUAGGAAA hit 46 : 28932 28822 (rev) 43.70 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 :+CUGG:CC AAGG:AGUG:GUUA+C CAAUU+ UUG+U+AC U+AGUU+CAG + 66575 UGCUGGCCCUAAGGUAGUGAGUUACCUCAAUUGCUUGUUCACCAUCAGUUACAGGUCaaa 66634 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C CCC +C:CACU:CUGCACU G:CUAG+: 66635 cUCCUUGUUCUacucuuUCCACCCUUCUCACUACUGCACUGGACUAGGAAA 66685 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9491,sp|AC002461.2|AC002461 Homo sapiens BAC clone CTA-204I16 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GAAUGGUCCAAGUGCAGUAGUGUUUACAACUAAAUUGAUCACAAGCAGUUACAGAUUUCCUUGUUCCUUCUCCGCUUCCACUGUUGCAUUUGACUAGACUU hit 47 : 37862 37762 (rev) 49.67 bits <<<<<<<<-----<<<<<<<____________.___________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUU.aAuUGaUUAcAgUUAGUUUCAguAaUC 59 G::UGGUCC A :AGU:G U++U+ACAA+U AAUUGAU+ACA +AGUU+CAG+++UC 159412 GAAUGGUCCAAGUGCAGUAG-UGUUUACAACUaAAUUGAUCACAAGCAGUUACAGAUUUC 159470 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUC UUCUCC C+ C:ACU: UGCA UUGACUA::CUU 159471 CUUGUUCCUUCUCCGCUUCCACUGUUGCAUUUGACUAGACUU 159512 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9533,sp|AC002522.2|AC002522 Homo sapiens Chromosome 22 Cosmid Clone 46a9 In DGCR Region, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCAAACUCCUUGUUGUACUCUUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU hit 48 : 28728 28837 (fwd) 50.05 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C GGUC GAAGG: GUG:GU AUC C AUU+AUUG+U+ACAGU+AGU +CAG++ 28728 GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCaaa 28787 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUU U UU +CC +C:CAC :CUGCACUUGACU G:CUU 28788 cUCCUUGUUGUacucuUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU 28837 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9544,sp|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence. ----isReversed: 0 ----hitSequence: GGCCGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUGGAACACCUCGUUCUACUCUUUCCCGCCUUCUCACUGCUGCACUUGAACAGUCUU hit 49 : 126515 126625 (fwd) 56.95 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C:: UC GAAGGUAGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG++ 126515 GGCCGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUGgaa 126574 .__________.....________.__>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCC.CCccAcugcUgcaCUUgACuagccUU 101 CCU GUUCU UUC+C CC +C:CACUGCUGCACUUGA ::G:CUU 126575 cACCUCGUUCUacucuUUCCCGCCuUCUCACUGCUGCACUUGAACAGUCUU 126625 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9567,sp|AC002980.1|AC002980 Homo sapiens Xp22 BAC 620F15 (Genome Systems BAC library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCCAAAGGUAAUGAAUUAUCUCAAUUGACUGUUCACAGAUUAAACUCCUUGUUCUACCCUUUCCCCGCUUCUCACCACUGAAUUUGACUAGUCUU hit 50 : 131345 131245 (rev) 35.92 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 G:CUGG:CC AAGG: :UG: UUAUC CAAUU+A UG+U+AC + UU+ AA UC 10131 GGCUGGCCCAAAGGUAAUGAAUUAUCUCAAUUGACUGUUCAC---AGAUUA----AAcUC 10183 ________......__________>>>>>>>------->>>>>>>>:: 60 cUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUCU U C+C C +C:CA: :CUG+A UUG:CUAG:CUU 10184 CUUGUUCUacccuuUCCCCGCUUCUCACCACUGAAUUUGACUAGUCUU 10231 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9568,sp|AC002981.1|AC002981 Homo sapiens Xp22 BAC GS279A12 (Genome Systems) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAGAGAUUGAAUUUCUUGUUCUACUCUUUUCCACAUUCUCAGUACUACACUUGACUAGUUUU hit 51 : 29919 30029 (fwd) 57.87 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUG:UC GAAGG:A UG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+ AG+++ 29919 GGCUGAUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAGAGAUUgaa 29978 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CUUGUUCU UUC+ C+ +C:CA U:CU CACUUGA:UAG:+UU 29979 uUUCUUGUUCUacucuuUUCCACAUUCUCAGUACUACACUUGACUAGUUUU 30029 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9657,sp|AC003657.1|AC003657 Homo sapiens Xp22 BAC GS-602M16 (Genome Systems Human BAC library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUACAGUAGUGUUUACGACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCUCUCCCACUGCUUCAGUUGGCUAGCCUU hit 52 : 30085 29986 (rev) 51.36 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG C GA ::AGU:G U++U+AC A+UAAUUGAU+ACA +AGUU+CAG+++UC 35632 GGCUGGUCUGAGUACAGUAG-UGUUUACGACUAAUUGAUCACAACCAGUUACAGAUUUCU 35690 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC C+CC:ACU::U CA UUG CUAGCCUU 35691 UUGUUCCUUCUCCUCUCCCACUGCUUCAGUUGGCUAGCCUU 35731 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9680,sp|AC003688.1|AC003688 Homo sapiens chromosome 17, clone hRPC.4_G_17, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAAGGUAGUGAAUUAUUUCAAUUGAUUGUUCACAGUCAGUUACAGACGGAACUUCUUUUUCCACUCUCACUGCUUUCUCACUACUGCAUCUGACUAGUCUU hit 53 : 68562 68453 (rev) 46.38 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUC GAAGG:AGUG: UUAU+ CAAUU+AUUG+U+ACAGU+AGUU+CAG+ 29556 AGCUGGUCUGAAGGUAGUGAAUUAUUUCAAUUGAUUGUUCACAGUCAGUUACAGACGgaa 29615 ..__________________....__>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCUUUCUccCC....CCccAcugcUgcaCUUgACuagccUU 101 UC UU+U C+ UCUC C +C:CACU:CUGCA UGACUAG::UU 29616 cuUCUUUUUCCACUCUCACUgcuuUCUCACUACUGCAUCUGACUAGUCUU 29665 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9695,sp|AC003959.1|AC003959 Homo sapiens chromosome 5, P1 clone 1029A7 (LBNL H15), complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCUGAAGGUAGUGAAUUAUCUCAAUUGACUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUACUCUUUUCCCCCUUCUCACUACUGCCCUUGACUAGUCUU hit 54 : 67501 67609 (fwd) 58.27 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:UC GAAGG:AGUG: UUAUC CAAUU+A U U+ACAGU+AGUU+CAG++ 67501 GGCUGAUCUGAAGGUAGUGAAUUAUCUCAAUUGACU--UCACAGUCAGUUACAGAUCgaa 67558 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCC +C:CACU:CUGC+CUUGA:UAG:CUU 67559 cUCCUUGUUCUacucuuUUCCCCCUUCUCACUACUGCCCUUGACUAGUCUU 67609 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9726,sp|AC004000.1|AC004000 Human PAC clone RP3-404F18 from Xq23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAGUGGUGUUUACAAGUAAUUGACCACAAUCAGCUACAGAUUUCUUUGUUCCUUCCCACUCCCACUGCUUCACUUGACUUGCCCU hit 55 : 35676 35774 (fwd) 51.79 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC GGUC A G:AGUGG U++U+ACAA UAAUUGA +ACA U+AG U+CAG+++UC 35676 GGCUGGUCAAAGUGCAGUGG-UGUUUACAAGUAAUUGACCACAAUCAGCUACAGAUUUCU 35734 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U +CC+C+CCCACU:CU CACUUGACU GCC U 35735 UUGUUC-CUUCCCACUCCCACUGCUUCACUUGACUUGCCCU 35774 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9757,sp|AC004033.3|AC004033 Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCCAAAGUUAGCUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCAAACUCAUUCGUCUCUGUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA hit 56 : 20213 20321 (fwd) 40.57 bits <<<<<<<<-----<<<<.<<<_____________________________________.. 1 ggcugGUcCGAAgguag.UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUGG: C AAG::AG UG:GUUAU+ CA UU+AUUG+U+A+AGU+AGU +CAG++ 20213 GGCUGGGCCAAAGUUAGcUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCaa 20272 ..__________...__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UU +UCU U C+CCC +C:CACU::UGCACUU :CUAG:CU 20273 acUCAUUCGUCUcugUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA 20321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9757,sp|AC004033.3|AC004033 Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCCGAAGGUAGUGUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACUCCAGGUUCUACUUUUUCACCUUCUCACUACUGCAGUUGACUAGACUU hit 57 : 14366 14260 (rev) 36.52 bits <<<<<<<<-----<<<<..<<<______________________________________ 1 ggcugGUcCGAAgguag..UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaU 58 G :UGGUCCGAAGG:AG UG:GUUA+C CA UU+AUUG+U+ACAGU+A + ++A U 130991 GGUUGGUCCGAAGGUAGugUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACU 131050 _________....__________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CC +GUUCU UU + CC +C:CACU:CUGCA UUGACUA: CUU 131051 CCAGGUUCUacuuUUUCACCUUCUCACUACUGCAGUUGACUAGACUU 131097 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9853,sp|AC004166.12|AC004166 Homo sapiens Chromosome 7 BAC Clone 239c10, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 58 : 158851 158950 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 158851 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 158909 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 158910 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 158950 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9857,sp|AC004170.1|AC004170 Homo sapiens clone UWGC: y19x012 from 6p21, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCUUUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU hit 59 : 11802 11703 (rev) 68.06 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA GUAGUGG U++U+ACAA+UAAUUGAU+ACA +A UU+CAG+++UC 27898 GGCUGGUCAGAGUGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCU 27956 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+UUC UUCUCC C+CCCACUGCU ACUUGACUAGCCUU 27957 UUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU 27997 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9865,sp|AC004180.1|AC004180 Homo sapiens clone UWGC:M32A from 6p21, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGUGUACAACUAAUUGAUCACAACCAGUUAUAGAUGUCUUUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 60 : 15616 15712 (fwd) 47.84 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA :AGUG GU ACAA+UAAUUGAU+ACA +AGUU+ AG++ UC 15616 GGCUGGUCUGAGUGCAGUGUGU----ACAACUAAUUGAUCACAACCAGUUAUAGAUGUCU 15671 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCU+C+C+C CACU: U CACUUGACUAGCCUU 15672 UUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 15712 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9968,sp|AC004461.3|AC004461 Homo sapiens Chromosome 22q11.2 Cosmid Clone 119f4 In DGCR Region, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCAAACUCCUUGUUGUACUCUUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU hit 61 : 15929 16038 (fwd) 50.05 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C GGUC GAAGG: GUG:GU AUC C AUU+AUUG+U+ACAGU+AGU +CAG++ 15929 GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCaaa 15988 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUU U UU +CC +C:CAC :CUGCACUUGACU G:CUU 15989 cUCCUUGUUGUacucuUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU 16038 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #14,sp|AC004522.3|AC004522 Homo sapiens PAC clone RP4-604G5 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAGUGCUGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCUUUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA hit 62 : 96353 96254 (rev) 42.15 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU A G:AGUG U++U+ CAA AAUU AU+ACA +AGUU+CA ++ UC 3745 GGCUGGUCAAAGUGCAGUGC-UGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCU 3803 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC +C+C CACU:CU CACU ACUAGCCU 3804 UUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA 3844 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #45,sp|AC004562.1|AC004562 Homo sapiens chromosome 17, clone hRPC.34_M_24, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGAUAGCGAAGUAUCUCAACUGAUUGUUCACAGUUCGUUAAGGAUCUUACUCUUUGUUCUACAAUUCCCCCCUUCUCACUACUGCACUUGACUAAUAAA hit 63 : 71580 71689 (fwd) 41.10 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 :+UGGUC GAAG::AG:G: UAUC CAA+U+AUUG+U+ACAGUU GUU+ AG A+ 71580 GGCUGGUCUGAAGAUAGCGAAGUAUCUCAACUGAUUGUUCACAGUUCGUUA-AGGAUcuu 71638 ..__________.....__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU U C+CCC +C:C:CU::UGCACUUGACUA+: 71639 acUCUUUGUUCUacaauUCCCCCCUUCUCACUACUGCACUUGACUAAUAAA 71689 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #108,sp|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence. ----isReversed: 0 ----hitSequence: AAUUGGUCUAAGUAUAGUGGUGUUUAUAACUAAUUGAUCACAAGUGGUAACAGAUUUCUUUGUUCCUUUAGCAGUCCCACUGCUUCACCUGAAUAGUAAA hit 64 : 130374 130473 (fwd) 29.56 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :::UG UC A :UAGUGG U++U+A AA+UAAUUGAU+ACA U+GU +CAG+++UC 130374 AAUUGGUCUAAGUAUAGUGG-UGUUUAUAACUAAUUGAUCACAAGUGGUAACAGAUUUCU 130432 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UU C+ +CCCACUG:U CAC UGA UA::: 130433 UUGUUCCUUUAGCAGUCCCACUGCUUCACCUGAAUAGUAAA 130473 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #137,sp|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.117_B_12, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCUAGUGCAGUGGUGUUUACAACUAAUUCAUCACAACCAGUUAGAGAUUUCUUUCUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 65 : 55444 55543 (fwd) 63.66 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:AGUGG U++U+ACAA+UAAUU AU+ACA +AGUU+ AG+++UC 55444 GGCUGGUCCUAGUGCAGUGG-UGUUUACAACUAAUUCAUCACAACCAGUUAGAGAUUUCU 55502 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC UUCUCC+C+CCCACU:CU CACUUGACUAGCCUU 55503 UUCUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 55543 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #241,sp|AC004849.1|AC004849 Homo sapiens PAC clone RP4-659J6 from 7q33-q35, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUAUGGUGUUUAUAACUAUUUGAUCACAAACAAUUACAGAUUUCUUUGUUUCUUCUCCAUCUCACUGCUUCACUUGACUAGAGAA hit 66 : 92263 92358 (fwd) 32.98 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 + CUGGUC GA GUA UG GU++U+A AA+UA UUGAU+ACA +A UU+CAG+++UC 92263 GGCUGGUCUGA--GUA-UG-GUGUUUAUAACUAUUUGAUCACAAACAAUUACAGAUUUCU 92318 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUCC+ C CACUGCU CACUUGACUAG + 92319 UUGUUUCUUCUCCAUCU-CACUGCUUCACUUGACUAGAGAA 92358 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #259,sp|AC004867.5|AC004867 Homo sapiens PAC clone RP4-728P19 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 67 : 70782 70683 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 72956 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 73014 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 73015 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 73055 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #268,sp|AC004878.3|AC004878 Homo sapiens PAC clone RP4-754G14 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 68 : 8195 8294 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 8195 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 8253 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 8254 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 8294 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #268,sp|AC004878.3|AC004878 Homo sapiens PAC clone RP4-754G14 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 69 : 36220 36319 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 36220 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 36278 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 36279 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 36319 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #272,sp|AC004882.3|AC004882 Homo sapiens PAC clone RP1-76B20 from 22, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCCAAGUGCAGCAGUGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCUUUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC hit 70 : 105364 105463 (fwd) 35.39 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUCC A G:AG::G U++U A+UAA UGAU+ACA +AG U+CAG+++UC 105364 GGCUAGUCCAAGUGCAGCAG-UGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCU 105422 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+C+CC::CU:C C CUUGAC:AGCCU 105423 UUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC 105463 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #285,sp|AC004895.2|AC004895 Homo sapiens PAC clone RP4-810E6 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCGGGCAUGGUGGUGUUCAUAGCUAAUCAUCAGUUACAGAUUCCUUGGUUCCUUCCCCACUCCCACUGCUUCACUUGACUAGCCUG hit 71 : 20977 21068 (fwd) 33.26 bits <<<<<<<<-----<<<..<<<<______________________________________ 1 ggcugGUcCGAAggua..gUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaU 58 GGCUGG:C G G:A GUGG U++UCA UA U AU+A+ +AGUU+CAG++++ 20977 GGCUGGCCGG---GCAugGUGG-UGUUCA----UAGCUAAUCAU---CAGUUACAGAUUC 21025 ___________________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 C U+GUUC UUC+CC+C+CCCACU:CU CACUUG:CUAGCCU 21026 CUUGGUUCCUUCCCCACUCCCACUGCUUCACUUGACUAGCCUG 21068 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #294,sp|AC004904.1|AC004904 Homo sapiens PAC clone RP5-828F13 from 1, complete sequence. ----isReversed: 0 ----hitSequence: GCCUUCUCAGUGCAGUGGUAUUGACAUUAACAACUAAUUGAUCACAAGCAGUUACAGAUUUAUUUGUUCCUUCUCCACUCCCACUCCUUCACUUGACUAUCCUU hit 72 : 117302 117405 (fwd) 34.18 bits <<<<<<<<-----<<<<<<<_.__...____.____________________________ 1 ggcugGUcCGAAgguagUggG.UU...AUCa.CAAUUaAuUGaUUAcAgUUAGUUUCAgu 55 G U UC A G AGUGG+ UU AU+A CAA+UAAUUGAU+ACA +AGUU+CAG+ 117302 GCCUUCUC--AGUGCAGUGGUaUUgacAUUAaCAACUAAUUGAUCACAAGCAGUUACAGA 117359 ______________________>>>>>>>------->>>>>>>>:: 56 AaUCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 ++U UUGUUC UUCUCC+C+CCCACU CU CACUUGA A CUU 117360 UUUAUUUGUUCCUUCUCCACUCCCACUCCUUCACUUGACUAUCCUU 117405 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #353,sp|AC004966.2|AC004966 Homo sapiens PAC clone RP5-1107K15 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAGAUGGAGUGAGUUAUCUCAAUUGAUUGUUCACAAGCAGUUACUGAUGGAACUGCUGGUUCUGUUCUUUUCCCACUUCUCACUACUGCAUUUGUCUAGUUAA hit 73 : 60153 60263 (fwd) 46.72 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGG CC A G AGUG:GUUAUC CAAUU+AUUG+U+ACA +AGUU+C G++ 60153 GGCUGGUCCAGAUGGAGUGAGUUAUCUCAAUUGAUUGUUCACAAGCAGUUACUGAUGgaa 60212 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CU+GUUCU UUC+C C +C:CACU CUGCA UUG CUAG:+ 60213 cUGCUGGUUCUguucuuUUCCCACUUCUCACUACUGCAUUUGUCUAGUUAA 60263 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #364,sp|AC004977.2|AC004977 Homo sapiens PAC clone RP5-1152C17 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAGUGCUGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCUUUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA hit 74 : 41723 41624 (rev) 42.15 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU A G:AGUG U++U+ CAA AAUU AU+ACA +AGUU+CA ++ UC 64751 GGCUGGUCAAAGUGCAGUGC-UGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCU 64809 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC +C+C CACU:CU CACU ACUAGCCU 64810 UUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA 64850 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #366,sp|AC004980.5|AC004980 Homo sapiens PAC clone RP5-1158B1 from 7q11.2-q22, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 75 : 9646 9745 (fwd) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 9646 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 9704 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 9705 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 9745 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #419,sp|AC005037.2|AC005037 Homo sapiens BAC clone RP11-469M7 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAUGGUAGUGGGUUAUCAGAACUUAAUAGUUAUUAGUGUCACGAAAAUUAGUAUACAACCCCUACCGCUAAAUUUGACUGGCGUU hit 76 : 151239 151332 (fwd) 31.31 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUCC A GGU GU GGUUAUCA AA+U A U UUA+ UAGU UCA+ AA 151239 GGCUGGUCCAAUGGUAGUGGGUUAUCAGAACUUAAUAGUUAU---UAGUGUCACGAA-AA 151294 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +U+U C +CCCC AC GCU +A UUGACU:GC+UU 151295 UUAGUAU---ACAACCCCUACCGCUAAAUUUGACUGGCGUU 151332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #425,sp|AC005043.2|AC005043 Homo sapiens BAC clone RP11-576N21 from 1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCCAAUGGUAGUGGGUUAUCAGAACUUAUCAACAUUAGUGUUGCUAAAGUUGGUAUACAACCCCCCACUGCGAAAUUUGGCUGGCUUU hit 77 : 153390 153483 (fwd) 34.14 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GG:CC A GGUAGUGGGUUAUCA AA U AU+A UUAGU U +UAA 153390 GGCUGGCCCAAUGGUAGUGGGUUAUCA----GAACUUAUCAACAUUAGUGUUGCUAA-AG 153444 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCCCCACUGC +A UUG:CU:GC+UU 153445 UUGGUAUa---CAACCCCCCACUGCGAAAUUUGGCUGGCUUU 153483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #430,sp|AC005049.2|AC005049 Homo sapiens BAC clone CTB-23I15 from 7, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGCCCGAAUGCAGCGGUGGUUACAGUUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCGA hit 78 : 32828 32927 (fwd) 47.30 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU G:CCGAA G:AG:GG U+ U+ACA UUAAUUGAU+ACA +AGUU+CAG+++U 32828 AGCUGGCCCGAAUGCAGCGG-UGGUUACAGUUAAUUGAUCACAACCAGUUACAGAUUUUU 32886 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCC:CU:CU CACU G:C AGC: 32887 UUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCGA 32927 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #440,sp|AC005064.3|AC005064 Homo sapiens clone CTB-107G13, complete sequence. ----isReversed: 1 ----hitSequence: UCCUGGUCCAAGUCCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACUGAUUUCUUUGUUCCUUCAUUUCCACUGCUUCACUUGACUAGCCUA hit 79 : 33168 33072 (rev) 49.83 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : CUGGUCC A :AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+C G+++UC 86317 UCCUGGUCCAAGUCCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACUGAUUUCU 86375 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U+C+ + CCACU: U CACUUGACUAG :U 86376 UUGUUCC---UUCAUUUCCACUGCUUCACUUGACUAGCCUA 86413 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #440,sp|AC005064.3|AC005064 Homo sapiens clone CTB-107G13, complete sequence. ----isReversed: 1 ----hitSequence: UCCUGGUCCAAGUGCAGUGGUAUUUACAACUGAUUUAUACAACCAGUUACUGAUUUCUUUGUUCCUUCUACAUUCCCACUGCUUCACUUGACUAGCCUA hit 80 : 31637 31539 (rev) 49.56 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : CUGGUCC A G:AGUGG U +U+ACAA+U+AUU AU ACA +AGUU+C G+++UC 87848 UCCUGGUCCAAGUGCAGUGG-UAUUUACAACUGAUUUAU-ACAACCAGUUACUGAUUUCU 87905 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+ +CCCACU:CU CACUUGACUAG :U 87906 UUGUUCCUUCUACAUUCCCACUGCUUCACUUGACUAGCCUA 87946 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #446,sp|AC005071.2|AC005071 Homo sapiens clone RG161A02, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGCAUA hit 81 : 128183 128084 (rev) 47.00 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GCUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 81200 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 81258 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAGC U 81259 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGCAUA 81299 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #450,sp|AC005076.2|AC005076 Homo sapiens BAC clone CTA-227L24 from 7q21.1-q21.2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCCAGUGCAGUGGUGUUGACAACUAAUUGAUCAUAGCCCGUUACAGAUUUCUUUGCUCCUUCUCCAAUCUCCCUGCUUCACUUGACUGGCCUA hit 82 : 68673 68574 (rev) 53.34 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC:GGUCC A G:AG G U++U ACAA+UAAUUGAU+A+AG + GUU+CAG+++UC 89474 GGCUGGUCCCAGUGCAGUGG-UGUUGACAACUAAUUGAUCAUAGCCCGUUACAGAUUUCU 89532 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG UC UUCUCC+ +C C CU:CU CACUUGACU:GCCU 89533 UUGCUCCUUCUCCAAUCUCCCUGCUUCACUUGACUGGCCUA 89573 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #461,sp|AC005088.3|AC005088 Homo sapiens BAC clone CTA-313A17 from 7q22-q31.1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 83 : 128945 129044 (fwd) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 128945 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 129003 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 129004 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 129044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #469,sp|AC005098.2|AC005098 Homo sapiens BAC clone CTA-350L10 from 7q11.2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 84 : 170871 170970 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 170871 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 170929 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 170930 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 170970 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #641,sp|AC005346.1|AC005346 Homo sapiens chromosome 16, cosmid clone 2H2 (LANL), complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAGCACAGUGGUGUUCACAACGAAUUGAUCACAGCCAGGUAGAAUUCUUCAUUCUUUCUCCAGUCCUACUGCUUUGCUUGACCAGCCUU hit 85 : 36901 36804 (rev) 36.02 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GUCC A ::AGU G U++UCACAA+ AAUUGAU+ACAG +AG U+ G+A+UC 1949 AGCUGGUCCAAGCACAGUGG-UGUUCACAACGAAUUGAUCACAGCCAGGUA--GAAUUCU 2005 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UUCUUUCUCC+ +CC ACU::U CUUGAC:AGC:UU 2006 UCAUUCUUUCUCCAGUCCUACUGCUUUGCUUGACCAGCCUU 2046 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #693,sp|AC005409.1|AC005409 Homo sapiens chromosome 10 clone 14951 map 10, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAUGGUAGUCAGUUAUCUCAAUUGAUUGCUCACAGUCAGUUACAGGUCAAACUCCUUGUUCUUCUCUUUUCCCCCCUCACUACUGUACUUGGCUAGUCUA hit 86 : 5761 5869 (fwd) 59.06 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG CC A GG:AGU :GUUAUC CAAUU+AUUG U+ACAGU+AGUU+CAG + 5761 GGCUGGUCCAAUGGUAGUCAGUUAUCUCAAUUGAUUGCUCACAGUCAGUUACAGGUCaaa 5820 .__________....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UU UCCCCCC: ACU:CUG ACUUG CUAG:CU 5821 cUCCUUGUUCUucucUUUUCCCCCCUCACUACUGUACUUGGCUAGUCUA 5869 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #699,sp|AC005477.1|AC005477 Homo sapiens PAC clone RP1-283M22 from 14, complete sequence. ----isReversed: 0 ----hitSequence: AACUGGUCCAAAGGUAAGAGGUAUCUCCAUUGAUUGUUCAGUCAGUUACAGAUCAAACUCCUUGCUCUACUUUUUUCUCCCUUCUCACUAGUGUACUUGACUAGUCUU hit 87 : 29987 30094 (fwd) 37.87 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAG :A G:G UAUC C AUU+AUUG+U+A GU+AGUU+CAG++ 29987 AACUGGUCCAAAGGUA-AGAGGUAUCUCCAUUGAUUGUUCA--GUCAGUUACAGAUCaaa 30043 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU UUCUCCC +C:C CU: UG ACUUGACUAG::UU 30044 cUCCUUGCUCUacuuuuUUCUCCCUUCUCACUAGUGUACUUGACUAGUCUU 30094 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #709,sp|AC005488.2|AC005488 Homo sapiens BAC clone RP11-313P13 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 88 : 148923 149022 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 148923 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 148981 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 148982 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 149022 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #709,sp|AC005488.2|AC005488 Homo sapiens BAC clone RP11-313P13 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 89 : 176899 176998 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 176899 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 176957 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 176958 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 176998 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #709,sp|AC005488.2|AC005488 Homo sapiens BAC clone RP11-313P13 from 7, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGCCCGAGUGCAGUGGUGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA hit 90 : 121249 121150 (rev) 45.62 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU G:CCGA G:AGUGG U+ U+ACA UUAAUUGAU+ACA A UU+CAG+++U 64489 AGCUGGCCCGAGUGCAGUGG-UGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUU 64547 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACU G:C AGC: 64548 UUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA 64588 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #718,sp|AC005500.2|AC005500 Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCCAAAGUUAGCUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCAAACUCAUUCGUCUCUGUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA hit 91 : 132562 132670 (fwd) 40.57 bits <<<<<<<<-----<<<<.<<<_____________________________________.. 1 ggcugGUcCGAAgguag.UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUGG: C AAG::AG UG:GUUAU+ CA UU+AUUG+U+A+AGU+AGU +CAG++ 132562 GGCUGGGCCAAAGUUAGcUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCaa 132621 ..__________...__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UU +UCU U C+CCC +C:CACU::UGCACUU :CUAG:CU 132622 acUCAUUCGUCUcugUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA 132670 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #718,sp|AC005500.2|AC005500 Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCCGAAGGUAGUGUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACUCCAGGUUCUACUUUUUCACCUUCUCACUACUGCAGUUGACUAGACUU hit 92 : 126715 126609 (rev) 36.52 bits <<<<<<<<-----<<<<..<<<______________________________________ 1 ggcugGUcCGAAgguag..UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaU 58 G :UGGUCCGAAGG:AG UG:GUUA+C CA UU+AUUG+U+ACAGU+A + ++A U 65878 GGUUGGUCCGAAGGUAGugUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACU 65937 _________....__________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CC +GUUCU UU + CC +C:CACU:CUGCA UUGACUA: CUU 65938 CCAGGUUCUacuuUUUCACCUUCUCACUACUGCAGUUGACUAGACUU 65984 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #731,sp|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 14q24.3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUAUCUCAACUGAUGUUCACAGUCAGUUACAGAUCAAGUGCCUUGUUUUACUUUUUCCCCUCUUCUCACUACUGCAUUUGACUAAUUAA hit 93 : 8812 8921 (fwd) 45.59 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:+UGGUC GAAGG:AGUG:GUUAUC CAA+U+A UG+U+ACAGU+AGUU+CAG++ 8812 GGCUGGUCUGAAGGUAGUGAGUUAUCUCAACUGA-UGUUCACAGUCAGUUACAGAUCaag 8870 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CCUUGUU U U C+C C +C:CACU:CUGCA UUGACUA+:+ 8871 uGCCUUGUUUUacuuuuUCCCCUCUUCUCACUACUGCAUUUGACUAAUUAA 8921 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #731,sp|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 14q24.3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGGUAGUGAGUUAUAUCACCUGAUUGUUCAGUCAGUUACAGGCCAAACCCCUUGUUCUACUCUUUUCCCUUCUCAAUACUGCACUUGUUUUUAAAU hit 94 : 57074 57180 (fwd) 28.86 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G CC AAGG:A UG:GUUAU CA +U+AUUG+U+A GU+AGUU+CAG 57074 GGCUGGUCCAAAGGUAGUGAGUUAUAUCACCUGAUUGUUCA--GUCAGUUACAGGCCaaa 57131 .__________....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +CCUUGUUCU UU UCCC +C:CA U:CUGCACUUG U U 57132 cCCCUUGUUCUacucUUUUCCCUUCUCAAUACUGCACUUGUUUUUAAAU 57180 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #738,sp|AC005529.7|AC005529 Homo sapiens chromosome 22 clone bk256d12 map 22q12, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCCAAGUGCAGCAGUGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCUUUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC hit 95 : 286625 286724 (fwd) 35.39 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUCC A G:AG::G U++U A+UAA UGAU+ACA +AG U+CAG+++UC 286625 GGCUAGUCCAAGUGCAGCAG-UGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCU 286683 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+C+CC::CU:C C CUUGAC:AGCCU 286684 UUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC 286724 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #746,sp|AC005537.2|AC005537 Homo sapiens BAC clone GS1-308H5 from 7p13-p11.2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGCAGGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAUAGAGCAAACUGCUUGCUCUACUCUUUCACCCCUUCUCACUACUGCACUUGACUAGUUGA hit 96 : 47507 47397 (rev) 39.23 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGGUC GAAGG:AG:: GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+ AG+ 129244 GGCUGGUCUGAAGGUAGCAGGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAUAGAGCaaa 129303 .__________.....___._______>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUC.UccCCCCccAcugcUgcaCUUgACuagccUU 101 U CUUG UCU UUC +CCC +C ::CU:CUGCACUUGACUAG:+ 129304 cUGCUUGCUCUacucuUUCaCCCCUUCUCACUACUGCACUUGACUAGUUGA 129354 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #830,sp|AC005631.4|AC005631 Homo sapiens PAC clone RP5-1129J21 from 7, complete sequence. ----isReversed: 1 ----hitSequence: UACUGAUAACUGGUAGUGAGUUAUCCCAAUUGAUGGUUCACUGUCAGUUACCGAUCAAAUUCCUUGUUCUAUACUCUUUACUCCCCUUUCACUACUGCACUUAACUGGUCUU hit 97 : 127031 126920 (rev) 36.33 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::C:G:U: GG:AGUG:GUUAUC+CAAUU+AU G+U+AC GU+AGUU+C G++ 16743 UACUGAUA-ACUGGUAGUGAGUUAUCCCAAUUGAUGGUUCACUGUCAGUUACCGAUCaaa 16801 .__________........__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU........UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CUCCCC+ :CACU:CUGCACUU:A:U:G::UU 16802 uUCCUUGUUCUauacucuuUACUCCCCUUUCACUACUGCACUUAACUGGUCUU 16854 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #841,sp|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165_I_16, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGCUAUCUCAAUCGGAUUGUUCACACUCAGUUACAGAUUGAACUCCUUGUUCUACUUUCCCUGCUUCUCUCUACUGCAAUUGACUAGUCUU hit 98 : 3654 3545 (rev) 53.90 bits <<<<<<<<-----<<<<<<<___________.__________________________.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAU.UaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUGGUC GAAGG:AG G:G UAUC CAAU +AUUG+U+ACA U+AGUU+CAG+++ 173315 GGCUGGUCUGAAGGUAGUGAGCUAUCUCAAUcGGAUUGUUCACACUCAGUUACAGAUUga 173374 ..__________....__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:C CU:CUGCA UUGACUAG:CUU 173375 acUCCUUGUUCUacuuUCCCUGCUUCUCUCUACUGCAAUUGACUAGUCUU 173424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #934,sp|AC005821.1|AC005821 Homo sapiens chromosome 17, clone hRPK.156_L_14, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGAUGGUGAGUUAUCUCAAUUGGUUGUUCAUAGUCAGUUACAGACCAAAGUCUUUGUUCUACUCUUUCCUCCUUUCUGACUUUACUAGUCUU hit 99 : 145009 145111 (fwd) 37.41 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU C AAG:U:G :GUUAUC CAAUU+ UUG+U+A+AGU+AGUU+CAG+ 145009 GGCUGGUCCAAAGAUGGUGAGUUAUCUCAAUUGGUUGUUCAUAGUCAGUUACAGACCaaa 145068 .__________..__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU..UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU U U+CC CC: C:G: UU ACUAG:CUU 145069 gUCUUUGUUCUacUCUUUCCUCCUUUCUGAC----UUUACUAGUCUU 145111 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #940,sp|AC005829.1|AC005829 Homo sapiens chromosome 17, clone hRPK.259_G_18, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUAUAUUGGUGUUUACUAUUAAUUGAUCACAGCCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGAUUAGCCUU hit 100 : 85717 85816 (fwd) 60.32 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG UCC A :UA:UGG U++U+AC AUUAAUUGAU+ACAG +AGUU+CAG+++UC 85717 GGCUGGUCCAAGUAUAUUGG-UGUUUACUAUUAAUUGAUCACAGCCAGUUACAGAUUUCU 85775 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCA:UG:U CACUUGA UAGCCUU 85776 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGAUUAGCCUU 85816 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #945,sp|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.318_A_15, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCCAAUGGUGUUGGGUUAUCAGAACUUGUUAACAUUAGUGUCACUAAACUUGAUAUACAACCCCCUACUGCUAAAGUUAACUGGCUUU hit 101 : 59763 59856 (fwd) 30.83 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC:GGU C A GGU::U GGUUAUCA AA U UUA UUAGU UCA+UAA C 59763 AGCUGGUCCAAUGGUGUUGGGUUAUCA----GAACUUGUUAACAUUAGUGUCACUAA-AC 59817 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+U + CCCCC A::GCU +A UU ACU:GC:UU 59818 UUGAUAUa---CAACCCCCUACUGCUAAAGUUAACUGGCUUU 59856 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #986,sp|AC005899.1|AC005899 Homo sapiens chromosome 17, clone hRPK.227_G_15, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAAGGUAAUGAGUAAUCUCGAUUGUUCACAGUCAGUUACAGAUUGAGCUCCUGAUCUACUCUUUCCCUGCUUCUCACUACUGCACUUUGACUAGUCUU hit 102 : 173122 173016 (rev) 41.58 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUC GAAGG:A:UG:GU AUC +AUUG+U+ACAGU+AGUU+CAG+++ 10706 AGCUGGUCUGAAGGUAAUGAGUAAUCU----CGAUUGUUCACAGUCAGUUACAGAUUgag 10761 .__________......__________>>>>>>>-----.-->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaC.UUgACuagccUU 101 UCCU+ UCU U C++ C +C:CA:U:CUGCAC UUGACUAG::UU 10762 cUCCUG-AUCUacucuuUCCCUGCUUCUCACUACUGCACuUUGACUAGUCUU 10812 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1039,sp|AC005995.3|AC005995 Homo sapiens PAC clone RP1-42M2 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGAUGGUCAAAGUGCAACGCGGUUUACAGCUAAUUGAUCACCACCAGUUACAGAUUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUCACUAGCCUA hit 103 : 39168 39268 (fwd) 34.44 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GG:UGGU A G:A:: ++U+ACA +UAAUUGAU+AC +AGUU+CAG+++ U 39168 GGAUGGUCAAAGUGCAACGC-GGUUUACAGCUAAUUGAUCACCACCAGUUACAGAUUuUU 39226 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C ::U:CU CACUU ACUA:CCU 39227 UUUGUUCCUUCUCCACUCCAACUGCUUCACUUCACUAGCCUA 39268 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1055,sp|AC006011.2|AC006011 Homo sapiens PAC clone RP5-935K16 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGGCCAAGUGCAGUGGUGUUUACAACUGGUUGAUUGAUUAUAACCACUUACAGAUUUCUUUGUUCCUUCUCCAUUCCCAUUGCUUCACUUGAUUAGCCUA hit 104 : 129533 129430 (rev) 44.64 bits <<<<<<<<-----<<<<<<<__________....__________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAA....UUaAuUGaUUAcAgUUAGUUUCAguA 56 GGCUG :CC A G:A UGG U++U+ACAA UU+AUUGAUUA+A +A UU+CAG++ 21149 GGCUGGGCCAAGUGCAGUGG-UGUUUACAAcuggUUGAUUGAUUAUAACCACUUACAGAU 21207 _____________________>>>>>>>------->>>>>>>>:: 57 aUCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +UC UUGUUC UUCUCC+ +CCCA U:CU CACUUG: UAGCCU 21208 UUCUUUGUUCCUUCUCCAUUCCCAUUGCUUCACUUGAUUAGCCUA 21252 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1055,sp|AC006011.2|AC006011 Homo sapiens PAC clone RP5-935K16 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUCAUUAACAUUAGUGUCACUGAAGUUGAUAUACAACCCCCAACUGCUAAAUUUGACUGGCUUA hit 105 : 98679 98586 (rev) 41.27 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUCCGA GGUAGU GGUUAUCA AA U AUUA UUAGU UCA+U A 52003 GGCUGGUCCGAUGGUAGUGGGUUAUCA----GAACUCAUUAACAUUAGUGUCACUGA-AG 52057 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+U + CCCCC ACUGCU +A UUGACU:GC+U 52058 UUGAUAUa---CAACCCCCAACUGCUAAAUUUGACUGGCUUA 52096 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1058,sp|AC006014.3|AC006014 Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGCCCGAGUGCAGUGGUGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA hit 106 : 64093 64192 (fwd) 45.62 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU G:CCGA G:AGUGG U+ U+ACA UUAAUUGAU+ACA A UU+CAG+++U 64093 AGCUGGCCCGAGUGCAGUGG-UGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUU 64151 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACU G:C AGC: 64152 UUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA 64192 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1058,sp|AC006014.3|AC006014 Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 107 : 36405 36306 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 91357 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 91415 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 91416 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 91456 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1058,sp|AC006014.3|AC006014 Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 108 : 8437 8338 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 119325 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 119383 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 119384 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 119424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1066,sp|AC006023.2|AC006023 Homo sapiens PAC clone RP5-1147A1 from 7p14-p12, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCAGUCAGUUACAGAUCGAACUCUUUGUUCUCGUCUUCCCCCCGCUUCUCACUGCUGCACUUGACUAGUCUG hit 109 : 94159 94050 (rev) 53.41 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU: GAAGGUAGUG:GUUAUC AAUU+AUUG+U+A GU+AGUU+CAG++ 63227 GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCA--GUCAGUUACAGAUCgaa 63284 .__________.......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU C+C C +C:CACUGCUGCACUU:ACUAG:CU 63285 cUCUUUGUUCUcgucuucCCCCCGCUUCUCACUGCUGCACUUGACUAGUCUG 63336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1089,sp|AC006046.1|AC006046 Homo sapiens clone UWGC:r9a from 6p21, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGUUUUUGUUUCAUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 110 : 40568 40667 (fwd) 59.37 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GGCUGGUC GA :AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+ AG++ U 40568 GGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGuUU 40626 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC +UCU+C+C+CCCACU: U CACUUGACUAGCCUU 40627 UUGUUUC-AUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 40667 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1098,sp|AC006057.5|AC006057 Homo sapiens 12 PAC RP1-96H9 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCUAAAAGUAGUGAGUUAUCUCAAUGGAUUGCUCACGUCAGUUACAGAUGGAAGUCCUUGUUCUACUCUUCCCUGUUUCUCACUACCGCGCUUGACUAGUCUC hit 111 : 130589 130697 (fwd) 46.23 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG:C AA+G:AGUG:GUUAUC CAAU +AUUG U+AC GU+AGUU+CAG++ 130589 GGCUGGGCUAAAAGUAGUGAGUUAUCUCAAUGGAUUGCUCAC-GUCAGUUACAGAUGgaa 130647 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ +C:CACU:C GC CUUG:CUAG:CU 130648 gUCCUUGUUCUacucuUCCCUGUUUCUCACUACCGCGCUUGACUAGUCUC 130697 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1121,sp|AC006116.1|AC006116 Homo sapiens chromosome 19, BAC CIT-B-393i15 (BC301323), complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCUCAAAGGUAGUGAGUUCUACCAAUGUAUUGUCCACAGUCAGUUACAGACCAAAUUCCUUGGUCUACUCUUUCCCCCCUCCUCACUAAUGCACUUGACUAGUCUU hit 112 : 40974 40864 (rev) 46.41 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG::C AAG :AGUG:GUU U +CAAU AUUG+ +ACAGU+AGUU+CAG+ 125738 GGCUGGCUCAAAGGUAGUGAGUUCUACCAAUGUAUUGUCCACAGUCAGUUACAGACCaaa 125797 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG+UCU U C+CCC CC:CACU: UGCACUU::CUAG:CUU 125798 uUCCUUGGUCUacucuuUCCCCCCUCCUCACUAAUGCACUUGACUAGUCUU 125848 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1166,sp|AC006165.1|AC006165 Homo sapiens clone UWGC:y54c125 from 6p21, complete sequence. ----isReversed: 0 ----hitSequence: GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU hit 113 : 22709 22817 (fwd) 52.53 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU UCC AAG :AGUG:GUUAUC CAAUU+AUUG+U+A GU+AGUU+CAG+++ 22709 GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAGUUACAGAUUgaa 22766 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU: UGCACUUGA AG:CUU 22767 cUCCUUGUUCUacucuuUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU 22817 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1272,sp|AC006360.2|AC006360 Homo sapiens PAC clone RP5-1140N14 from 14q24.3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCUGAGGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUUACAGAUUGAACUCCUUGUUCUUUCCUUCCCCCUUUCUCACUGCUGCUCUUGACUAGUCUU hit 114 : 1845 1950 (fwd) 55.60 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU:GUC GA GGUAGUG:GUUAUC CAAUU+AUUG+U+AC AGUU+CAG+++ 1845 GGCUAGUCUGAGGGUAGUGAGUUAUCUCAAUUGAUUGUUCAC----AGUUACAGAUUgaa 1900 .__________.__________....>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.UUCUccCCCC....ccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CU+CCCCC :CACUGCUGC CUUGAC:AG:CUU 1901 cUCCUUGUUCUuUCCUUCCCCCuuucUCACUGCUGCUCUUGACUAGUCUU 1950 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1327,sp|AC006452.5|AC006452 Homo sapiens PAC clone RP4-592P3 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GACUGGUCUGAAGGCAGUGAGUCAACUGAAUUGAUUAUUCACAGUCAGUUACGCAUCCAACUCUUUAUUCUACUCUUCCCCCCUUCUCACUACUGCAUUUGACACUUGUG hit 115 : 48117 48226 (fwd) 31.41 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +: GUC GAAGG AGUG:GU A C AAUU+AUU +U+ACAGU+AGUU+C +++ 48117 GACUGGUCUGAAGGCAGUGAGUCAACUGAAUUGAUUAUUCACAGUCAGUUACGCAUCcaa 48176 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UU UUCU U C+CCC +C:CACU CUGCA UUGAC :+U 48177 cUCUUUAUUCUacucuUCCCCCCUUCUCACUACUGCAUUUGACACUUGUG 48226 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1350,sp|AC006480.3|AC006480 Homo sapiens BAC clone RP11-166O4 from 7p11.2-q11.2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 116 : 63240 63141 (rev) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 96513 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 96571 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 96572 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 96612 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1367,sp|AC006511.5|AC006511 Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUACAGUGGCAUUUACAACUAACUGAUCACAACCAGUUAUGAAUUUCUUCAUUACUUUUCCACUCACACUGCUUCACUUGACCAGCUUU hit 117 : 154160 154061 (rev) 36.53 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 +GCU:GUC GA ::AGUG +U+ACAA+UAA UGAU+ACA +AGUU+ G+A+ UC 32162 GGCUGGUCUGAGUACAGUGG-CAUUUACAACUAACUGAUCACAACCAGUUA-UGAAUuUC 32219 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UU+ UU UCC+C+C CACU::U CACUUGAC:AGC+UU 32220 UUCAUUACUUUUCCACUCACACUGCUUCACUUGACCAGCUUU 32261 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1372,sp|AC006517.46|AC006517 Homo sapiens 12 BAC RP11-277J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCUAAAUGCAGUGGUCCUUACAACCAACUGAUCACAACCAGUAACAAUUUUCUUUGUUCCUUCUCCACUCUCACAGCUUCACUUGACUAGCCUU hit 118 : 14909 15008 (fwd) 45.04 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUGGUC AA G: GUG U U+ACAA+ AA UGAU+ACA +AGU +CA U++UC 14909 AGCUGGUCUAAAUGCAGUGG-UCCUUACAACCAACUGAUCACAACCAGUAACAAUUUUCU 14967 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C CAC :CU CACUUGACUAGC:UU 14968 UUGUUCCUUCUCCACUCUCACAGCUUCACUUGACUAGCCUU 15008 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1372,sp|AC006517.46|AC006517 Homo sapiens 12 BAC RP11-277J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GCCUCGUCUGAAGGUAGUCAGUUACCUCAAUUGUUUGUUCACAGUGAAUUACAGAUCGAACUCCUUGUUCUACUCUUCCCCACUUCUCACUACUGCACUUGUCUUAAAGA hit 119 : 65260 65369 (fwd) 36.48 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + :G C GAAGG:AGU :GUUA+C CAAUU+ UUG+U+ACAGU A UU+CAG++ 65260 GCCUCGUCUGAAGGUAGUCAGUUACCUCAAUUGUUUGUUCACAGUGAAUUACAGAUCgaa 65319 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C: ACU:CUGCACUUG C: + 65320 cUCCUUGUUCUacucuUCCCCACUUCUCACUACUGCACUUGUCUUAAAGA 65369 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1372,sp|AC006517.46|AC006517 Homo sapiens 12 BAC RP11-277J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GAAUUAUCUAGGCAGUGAGUUAUCCCAAUUGAUUGUUCAGGAUCAGUUACAGAUCAUACUCCUUGCUCUACUUCCCCCCCCCCCUCACUACUGCAGUUGAGUAGUAUU hit 120 : 81215 81322 (fwd) 34.99 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::U :UC AGG AGUG:GUUAUC+CAAUU+AUUG+U+A + U+AGUU+CAG++ 81215 GAAUUAUC--UAGGCAGUGAGUUAUCCCAAUUGAUUGUUCAGGAUCAGUUACAGAUCaua 81272 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU C+CCCCCC:CACU CUGCA UUGA: A:: UU 81273 cUCCUUGCUCUacuucCCCCCCCCCCUCACUACUGCAGUUGAGUAGUAUU 81322 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1409,sp|AC006583.31|AC006583 Homo sapiens 3 BAC RP11-491D6 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCUGAGUGCAGUAAUGUUUACAAGUAAUUGAUCACAAGCGGUUACAGAUUUAUUUGUUCCUUCUCCACCUUCAUUGCUUCACUUGACUAGCCUU hit 121 : 26792 26891 (fwd) 55.89 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUC GA G:A U:: U++U+ACAA UAAUUGAU+ACA ++GUU+CAG+++U 26792 GGCUAGUCUGAGUGCAGUAA-UGUUUACAAGUAAUUGAUCACAAGCGGUUACAGAUUUAU 26850 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+CC ::A U:CU CACUUGAC:AGCCUU 26851 UUGUUCCUUCUCCACCUUCAUUGCUUCACUUGACUAGCCUU 26891 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1432,sp|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence. ----isReversed: 1 ----hitSequence: GGCCAGUCAGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAUCAGUUACAGGUCAAACUCCUUGCUCUACUCUUUUCCCUUUUCUCACUGCUGCACUGGACUAGUCUA hit 122 : 34043 33934 (rev) 48.65 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C::GUC GAAGGUAGUG:GUUAUC CAAUU+AUUG+U+AC U+AGUU+CAG + 145715 GGCCAGUCAGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAC-AUCAGUUACAGGUCaaa 145773 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU UUC+C +C:CACUGCUGCACU GAC::G:CU 145774 cUCCUUGCUCUacucuuUUCCCUUUUCUCACUGCUGCACUGGACUAGUCUA 145824 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1435,sp|AC006963.4|AC006963 Homo sapiens PAC clone RP1-278D1 from X, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUUCACUUUGACUGCUUCACUCGGCUAGCCAG hit 123 : 55748 55649 (rev) 55.06 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG CCGA G:AGU U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 32468 GGCUGGUCCGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 32526 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+C+C+ ACU:CU CACU G CUAGCC 32527 UUGUUCCUUCUUCACUUUGACUGCUUCACUCGGCUAGCCAG 32567 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1465,sp|AC006995.5|AC006995 Homo sapiens BAC clone RP11-396K3 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 124 : 207245 207146 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 4287 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 4345 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 4346 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 4386 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1465,sp|AC006995.5|AC006995 Homo sapiens BAC clone RP11-396K3 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 125 : 179291 179192 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 32241 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 32299 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 32300 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 32340 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1470,sp|AC007000.2|AC007000 Homo sapiens BAC clone RP11-467H10 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 126 : 18245 18344 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 18245 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 18303 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 18304 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 18344 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1480,sp|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGUCUCAACCCGUUGCAGAUGUGUUUGUUUUGUUUUGUUUUGUUUUGUUUUCUCCACUCCCACUGCUUCACCUGAUUAGCCUU hit 127 : 132225 132341 (fwd) 31.87 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUG UC GA G:AGUGG U++U+ACAA+UAAUUG U+ CA + GUU CAG++ U 132225 AGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUG-UCUCAACCCGUUGCAGAUGUGU 132282 _______..................__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU..................UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU U UUCUCC+C+CCCACU:CU CAC UGA UAGC:UU 132283 UUGUUUUguuuuguuuuguuuuguuUUCUCCACUCCCACUGCUUCACCUGAUUAGCCUU 132341 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1486,sp|AC007021.3|AC007021 Homo sapiens PAC clone RP6-155F9 from Xq23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAAUUACAUAUUGAACUUUUUGUUCUACUCUUUCUCCCCUUGUCACUACUGUACUUGACUACACUU hit 128 : 17538 17646 (fwd) 49.56 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G UGG:CC AAGG:AGUG:GUUAUC CAAUU+AUUG+U+A GU+A UU+CA +++ 17538 GGCUGGCCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAAUUACAUAUUgaa 17595 .__________.....__________.>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCC.ccAcugcUgcaCUUgACuagccUU 101 U UUGUUCU UUCUCCCC+ :CACU:CUG ACUUG:CUA CUU 17596 cUUUUUGUUCUacucuUUCUCCCCUUgUCACUACUGUACUUGACUACACUU 17646 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1494,sp|AC007029.3|AC007029 Homo sapiens clone RP5-855F16, complete sequence. ----isReversed: 1 ----hitSequence: GACUGGUCCAAGUGGUGUUUAUAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCAUUCUCACUGCUUCACUUGACUAGCCUU hit 129 : 92177 92083 (rev) 49.29 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCC A GU:GUG UUAU AC UAAUUGAU+ACA +AGUU+CAG+++UC 3169 GACUGGUCCAA--GUGGUGU-UUAUAAC---UAAUUGAUCACAACCAGUUACAGAUUUCU 3222 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +C CAC:GCU CACUUGACUAG:CUU 3223 UUGUUCCUUCUCCAUUCUCACUGCUUCACUUGACUAGCCUU 3263 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1519,sp|AC007066.4|AC007066 Homo sapiens chromosome 9, clone hRPK.355_O_1, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCCAAAGACAGUGAGUUAUCUCGAUUGUUCAGUCAGUUACAGAACAAACUCCUUGUUCUACUCUUUUCCCCGUUCUCACUACUGCACUUUAGUAGUCUU hit 130 : 98741 98845 (fwd) 36.75 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUG U C AAG: AGUG:GUUAUC +AUUG+U+A GU+AGUU+CAG+A 98741 AGCUGGUCCAAAGACAGUGAGUUAUCU----CGAUUGUUCA--GUCAGUUACAGAACaaa 98794 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CC +C:CACU :UGCACUU A UAG::UU 98795 cUCCUUGUUCUacucuuUUCCCCGUUCUCACUACUGCACUUUAGUAGUCUU 98845 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1600,sp|AC007242.3|AC007242 Homo sapiens BAC clone RP11-182H9 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGAUCCGAGUGCAGUGGUGUUUACAACUACUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUAACUGGCCAA hit 131 : 69448 69349 (rev) 56.43 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC:G:U CGA G:AGUGG U++U+ACAA+UA UUGAU+ACA +AGUU+CAG+++UC 43301 AGCUGAUCCGAGUGCAGUGG-UGUUUACAACUACUUGAUCACAACCAGUUACAGAUUUCU 43359 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUU A:U:GC: 43360 UUGUUCCUUCUCCACUCCCACUGCUUCACUUAACUGGCCAA 43400 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1631,sp|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUAUUCACAGUUAGCUACCAGUUGAACUCCUUACUCUGCUUUUUCUCCCCUUAUCACUUCUGUGCUUGAUUAGUCUU hit 132 : 35629 35738 (fwd) 40.63 bits <<<<<<<<-----<<<<<<<________________________________._____.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUC.AguAa.. 57 G:CUG UC GAAGG+AGUG:GUUAUC CA UU+A U +U+ACAGUUAG U+C AGU+ 35629 GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGA-UAUUCACAGUUAGCUACcAGUUGaa 35687 .__________.....__________.>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCC.ccAcugcUgcaCUUgACuagccUU 101 UCCUU UCU UUCUCCCC+ :CACU+CUG CUUGA UAG:CUU 35688 cUCCUUACUCUgcuuuUUCUCCCCUUaUCACUUCUGUGCUUGAUUAGUCUU 35738 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1725,sp|AC007435.12|AC007435 Homo sapiens, clone 6_C_10, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCUCCAAUGGUAGUGGGUUAUCAAAAUUUAUUAACAUUAGUUCACUAAAGUUGAUAUAUAACCCCCCAUUGCUAAAUCUGACUGGCUUU hit 133 : 33251 33343 (fwd) 32.47 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:G UCC A GGUA UGGGUUAUCA AAUU AUUA UUAGUU CA+UAA 33251 GGCUGCUCCAAUGGUAGUGGGUUAUCA----AAAUUUAUUAACAUUAGUU-CACUAA-AG 33304 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+U U CCCCCCA UGCU +A UGA U:GC+UU 33305 UUGAUAUa---UAACCCCCCAUUGCUAAAUCUGACUGGCUUU 33343 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1769,sp|AC007536.10|AC007536 Homo sapiens 12 BAC RP11-277E18 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AUUAUCUACGUAGUGAGUUAUCCCAAUUGAUUGUUCAGGGUCAGUUACAGAUCAAACUCCUUGUUCCACUCUUCCCCAUCCCCCCACUACGGCACUUCACUAGUAUU hit 134 : 10244 10138 (rev) 29.96 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 : : U:C G:AGUG GUUAUC+CAAUU+AUUG+U+A +GU+AGUU+CAG++ 61576 AUUAUCUAC----GUAGUGAGUUAUCCCAAUUGAUUGUUCAGGGUCAGUUACAGAUCaaa 61631 .__________....______..____>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUcc..CCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUC UUC+CC CCCC CACU:C GCACUU:A : :UU 61632 cUCCUUGUUCCacucUUCCCCauCCCCCCACUACGGCACUUCACUAGUAUU 61682 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1811,sp|AC007610.9|AC007610 Homo sapiens chromosome 16 clone RP11-429P3, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAUGGUAGUGGGUUAUCAGGACUUAUUAACAUUAGUGUCACUGAAGUUGGUAUACAACCCCCCACGCUAAGUUUGACUGGCUUU hit 135 : 110781 110689 (rev) 36.69 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC:GGUC GA GGUAGUGGGUUAUCA +A U AUUA UUAGU UCA+U A 104011 AGCUGGUCUGAUGGUAGUGGGUUAUCA----GGACUUAUUAACAUUAGUGUCACUGA-AG 104065 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCCCCAC GCU + UUGACU:GC:UU 104066 UUGGUAUa---CAACCCCCCAC-GCUAAGUUUGACUGGCUUU 104103 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1846,sp|AC007679.4|AC007679 Homo sapiens BAC clone RP11-273D4 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAUAUGCAGUGGUUUUACAAGUAAUUUAUCACAACCAGUUAGUUACAGAUUUCUUUGCUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 136 : 134611 134713 (fwd) 54.80 bits <<<<<<<<-----<<<<<<<_______________________...._____________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcA....gUUAGUUUCAguA 56 GGCUGGUCC A G:AGUGG U+U+ACAA UAAUU AU+ACA GUUAGUU+CAG++ 134611 GGCUGGUCCAUAUGCAGUGG--UUUUACAAGUAAUUUAUCACAaccaGUUAGUUACAGAU 134668 _____________________>>>>>>>------->>>>>>>>:: 57 aUCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +UC UUG UC UUCUCC+C+CCCACU:CU CACUUGACUAGCCUU 134669 UUCUUUGCUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 134713 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1852,sp|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUUUCACAGUCAGCUACAGAUUGAACUCCUUGCUCUACUCUUUUCCCCCCUUAUCACUUCUGCGCUUGUUUAGUCUU hit 137 : 78902 79012 (fwd) 46.61 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG C GAAGG+AGUG:GUUAUC CA UU+AUU U+ACAGU+AG U+CAG+++ 78902 GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUU-UCACAGUCAGCUACAGAUUgaa 78960 .__________....__________...>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCC...ccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU UU UCCCCCC :CACU+CUGC CUUG UAG:CUU 78961 cUCCUUGCUCUacucUUUUCCCCCCuuaUCACUUCUGCGCUUGUUUAGUCUU 79012 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1866,sp|AC007731.16|AC007731 Homo sapiens chromosome 22 clone b562f10 map 22q11, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCCAAAGUUAGCUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCAAACUCAUUCGUCUCUGUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA hit 138 : 137623 137731 (fwd) 40.57 bits <<<<<<<<-----<<<<.<<<_____________________________________.. 1 ggcugGUcCGAAgguag.UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUGG: C AAG::AG UG:GUUAU+ CA UU+AUUG+U+A+AGU+AGU +CAG++ 137623 GGCUGGGCCAAAGUUAGcUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCaa 137682 ..__________...__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UU +UCU U C+CCC +C:CACU::UGCACUU :CUAG:CU 137683 acUCAUUCGUCUcugUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA 137731 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1866,sp|AC007731.16|AC007731 Homo sapiens chromosome 22 clone b562f10 map 22q11, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCCGAAGGUAGUGUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACUCCAGGUUCUACUUUUUCACCUUCUCACUACUGCAGUUGACUAGACUU hit 139 : 131776 131670 (rev) 36.52 bits <<<<<<<<-----<<<<..<<<______________________________________ 1 ggcugGUcCGAAgguag..UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaU 58 G :UGGUCCGAAGG:AG UG:GUUA+C CA UU+AUUG+U+ACAGU+A + ++A U 50842 GGUUGGUCCGAAGGUAGugUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACU 50901 _________....__________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CC +GUUCU UU + CC +C:CACU:CUGCA UUGACUA: CUU 50902 CCAGGUUCUacuuUUUCACCUUCUCACUACUGCAGUUGACUAGACUU 50948 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1923,sp|AC007880.2|AC007880 Homo sapiens BAC clone RP11-323F11 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCUGGAAUGUAGUGAUGUUUACAACUAAUUGAUCACAAGCAGUUACCGAUUCCUUUGUUCCUGCUCCACUCUCACUGCUUCACUUGACUAGCCUU hit 140 : 67670 67769 (fwd) 61.17 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG:: GAA GUAGUG: U++U+ACAA+UAAUUGAU+ACA +AGUU+C G++++C 67670 GGCUGGCUGGAAUGUAGUGA-UGUUUACAACUAAUUGAUCACAAGCAGUUACCGAUUCCU 67728 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U CUCC+C+C:CACUGCU CACUU::CUAGCCUU 67729 UUGUUCCUGCUCCACUCUCACUGCUUCACUUGACUAGCCUU 67769 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1939,sp|AC007922.13|AC007922 Homo sapiens chromosome 18, clone RP11-178F10, complete sequence. ----isReversed: 1 ----hitSequence: GAUUGUAGACCAGUGAUUGGUUUAUAACCAGUAAUUGAUCACAACUGGUUAGAUUUCUUUGUUUCUUCUUCACUCCCACUGCUUCACUUAAUUAGCCUU hit 141 : 107779 107681 (rev) 29.78 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G::UG: AG: A:UGG+UUAU AC A UAAUUGAU+ACA U+GUU+ A U+ 32777 GAUUGUAGACCAGUGAUUGGUUUAUAACCAGUAAUUGAUCACAACUGGUUAGAUUUC-UU 32835 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC UUCU+C+C+CCCA:U :U CACUU :UA::CUU 32836 UGUUUC-UUCUUCACUCCCACUGCUUCACUUAAUUAGCCUU 32875 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1962,sp|AC007982.2|AC007982 Homo sapiens chromosome 17, clone RP11-44H5, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCAGUCACUUGCAGAUCAAACUCCUUAUUCUACUCUUUACCCCCUUCUCACUACUGCACUUGACUAUUCGA hit 142 : 33188 33296 (fwd) 41.92 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G: UGGUC GAAGG:AGUG:GUUAUC CA UU+AUUG+U+A GU+A UU CAG++ 33188 GGCUGGUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCA--GUCACUUGCAGAUCaaa 33245 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU UUCU U C+CCC +C:CACU:CUGCACUUGACUA :C 33246 cUCCUUAUUCUacucuuUACCCCCUUCUCACUACUGCACUUGACUAUUCGA 33296 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1971,sp|AC008006.10|AC008006 Homo sapiens chromosome 18, clone RP11-233K20, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUGUAGUGGUGUUUAGAACUAAUUGGUCCAACCAGUUACAGAUUUCUUUGUUCCCUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 143 : 66239 66141 (rev) 58.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A GUAGUGG U++U+A AA+UAAUUG U CA +AGUU+CAG+++UC 97838 GGCUGGUCCAAGUGUAGUGG-UGUUUAGAACUAAUUG-GUCCAACCAGUUACAGAUUUCU 97895 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UCUCC+C+CCCACUGCU CACUUGACUAGCCUU 97896 UUGUUCCCUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 97936 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2030,sp|AC008121.43|AC008121 Homo sapiens 12 BAC RP11-407N8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGUUUGAGUGCAGUGGUGUUUACAGUGAACUGAUCACAGCCAGUUAUAGAUUUUUGUUCCUCCUCCACUCCCACUGCUUCAAUUGACUAGGCUA hit 144 : 34705 34802 (fwd) 46.62 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G+:UGGU: GA G:AGUGG U++U+ACA U AA UGAU+ACAG +AGUU+ AG+++ 34705 GGUUGGUUUGAGUGCAGUGG-UGUUUACAGUGAACUGAUCACAGCCAGUUAUAGAUU-UU 34762 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U+ UUC U CUCC+C+CCCACU:CU CA UU:ACUA:+CU 34763 UG-UUCCUCCUCCACUCCCACUGCUUCAAUUGACUAGGCUA 34802 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2037,sp|AC008128.19|AC008128 Homo sapiens 12 BAC RP11-410A13 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAAGGUACUGUACUAUUUCAACCGAUUGUUCACAGUCAGUUACAGAUUGUCUUUUCCUCCUUCUCACUACUGCACUUGACUAGUCUU hit 145 : 72138 72043 (rev) 47.32 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 ::CUGGUCC AAGG:A UG UAU+ CAA+ +AUUG+U+ACAGU+AGUU+CAG+++ C 54404 AGCUGGUCCAAAGGUACUGUACUAUUUCAACCGAUUGUUCACAGUCAGUUACAGAUUGUC 54463 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC ++CC +C CA U:CUGCACUUGACUAG::UU 54464 UU-UUC----CUCCUUCUCACUACUGCACUUGACUAGUCUU 54499 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2049,sp|AC008158.16|AC008158 Homo sapiens chromosome 17, clone RP11-42F20, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCUGAAGGUAGUGAGUUACCUCAGUUGACUGUUCAGUUAGUUGCAGAUCAAACUCCUUGUUCUACUCUUUCCCCUCUUUCCACUACUGCAUAUGUGACUAGUCUA hit 146 : 19688 19798 (fwd) 31.72 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU:GUC GAAGG:AGUG GUUA+C CA UU+A UG+U+A GUUAGUU CAG++ 19688 GGCUAGUCUGAAGGUAGUGAGUUACCUCAGUUGACUGUUCA--GUUAGUUGCAGAUCaaa 19745 .__________......__________>>>>>>>-------..>>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUU..gACuagccUU 101 UCCUUGUUCU U C+C C + CACU:CUGCA U GAC:AG:CU 19746 cUCCUUGUUCUacucuuUCCCCUCUUUCCACUACUGCAUAUguGACUAGUCUA 19798 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2049,sp|AC008158.16|AC008158 Homo sapiens chromosome 17, clone RP11-42F20, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCGGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCAAUUGAUCAGCCUU hit 147 : 105175 105274 (fwd) 62.92 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU: UC GA G:AGUGG U++U+ACAA+UAAUUGAU+ACA ++GUU+CAG+++UC 105175 GGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCGGUUACAGAUUUCU 105233 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CA UUGA :AGCCUU 105234 UUGUUCCUUCUCCACUCCCACUGCUUCAAUUGAUCAGCCUU 105274 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2074,sp|AC008265.15|AC008265 Homo sapiens chromosome 7 clone RP11-256C24, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAUGAUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUAACUAAAGUUGGUAGAUAAUCCCCCCUGCUAAAUUUGACUGGCUAA hit 148 : 5480 5572 (fwd) 29.21 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUCC A G:UAG GGGUUAUCA AA U AUUA UUAGU U A+UAA 5480 GGCUGGUCCAAUGAUAGUGGGUUAUCA----GAACUUAUUAACAUUAGUGUAACUAA-AG 5534 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+ + + CCCC CUG:U +A UUGACU:GC+ 5535 UUGGUAG---AUAAUCCCCCCUGCUAAAUUUGACUGGCUAA 5572 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2075,sp|AC008266.3|AC008266 Homo sapiens PAC clone RP5-1145A24 from 7p11.2-p21, complete sequence. ----isReversed: 1 ----hitSequence: GGCCAGUCAGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAUCAGUUACAGGUCAAACUCCUUGCUCUACUCUUUUCCCUUUUCUCACUGCUGCACUGGACUAGUCUA hit 149 : 96067 95958 (rev) 48.65 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C::GUC GAAGGUAGUG:GUUAUC CAAUU+AUUG+U+AC U+AGUU+CAG + 81609 GGCCAGUCAGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAC-AUCAGUUACAGGUCaaa 81667 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU UUC+C +C:CACUGCUGCACU GAC::G:CU 81668 cUCCUUGCUCUacucuuUUCCCUUUUCUCACUGCUGCACUGGACUAGUCUA 81718 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2092,sp|AC008372.6|AC008372 Homo sapiens chromosome 14 clones RP11-111O16 and RP11-61F4 containing genes for nuclear receptor coactivator NCoA-62 (nuclear receptor coactivator NCoA-62) gene, complete cds; and unknown gene, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCUGAAGGUAUUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUCACAGAUCAAACUCCUUGCUCUACUCUUUCUCCCCUUCUCACUAUUGCACUUGACUAGUCUA hit 150 : 112253 112143 (rev) 52.34 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG:C GAAG :A:UG:GUUAUC CAAUU+AUUG+U+ACAGU+AGU +CAG++ 155986 GGCUGGCCUGAAGGUAUUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUCACAGAUCaaa 156045 .__________.....________.__>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCC.CCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU UUCUCCCC +C:CA:U: UGCACUUG:CUAG:CU 156046 cUCCUUGCUCUacucuUUCUCCCCuUCUCACUAUUGCACUUGACUAGUCUA 156096 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2095,sp|AC008378.6|AC008378 Homo sapiens chromosome 5 clone CTC-209H22, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGGCAAUGAAUUAUCUCAAUUGUUCAUAGUUAGUUACAGGUGGAACUCCUUGUUCUGCUCUUUUGCCUGACUACUGCACUUGACUAAUGUU hit 151 : 143638 143739 (fwd) 40.58 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:+UGGUCC AAGG A:U : UUAUC CAA UUG+U+A+AGUUAGUU+CAG + 143638 GGCUGGUCCAAAGGCAAUGAAUUAUCUCAA----UUGUUCAUAGUUAGUUACAGGUGgaa 143693 .__________.__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UCU+ CC: A:U CUGCACUUGACUA+:+UU 143694 cUCCUUGUUCUgCUCUUUUGCCUGACUACUGCACUUGACUAAUGUU 143739 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2110,sp|AC008393.7|AC008393 Homo sapiens chromosome 5 clone CTC-241N9, complete sequence. ----isReversed: 1 ----hitSequence: AGCGGGUCUGAUGGUGGUGGGUUAUGAGAACUGAUUAACAUUAGUGUCACUAACGUUGGUAUACAACUCUCCACUGCUAAGUUUAACUGGCUUA hit 152 : 106478 106385 (rev) 33.68 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC GGU GA GGU:GUGGGUUAU A AA UGAUUA UUAGU UCA+UAA C 60370 AGCGGGUCUGAUGGUGGUGGGUUAUGA----GAACUGAUUAACAUUAGUGUCACUAA-CG 60424 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + C C CCAC:GCU + UU ACU GC:U 60425 UUGGUAUa---CAACUCUCCACUGCUAAGUUUAACUGGCUUA 60463 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2124,sp|AC008412.8|AC008412 Homo sapiens chromosome 5 clone CTC-281H14, complete sequence. ----isReversed: 1 ----hitSequence: UGGUGGUCCGAGUGCAAUGGUGUUUACAACUAAUUGGUCACAACCAGUUACAGGUUUCUUUAUUCCUUCUCCAUUCCCACUGCUUCACUUGACUAGCCUU hit 153 : 62543 62444 (rev) 56.78 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G UGGUCCGA G:A:UGG U++U+ACAA+UAAUUG U+ACA +AGUU+CAG ++UC 18970 UGGUGGUCCGAGUGCAAUGG-UGUUUACAACUAAUUGGUCACAACCAGUUACAGGUUUCU 19028 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC UUCUCC+ +CCCA:U:CU CACUUGACUA C:UU 19029 UUAUUCCUUCUCCAUUCCCACUGCUUCACUUGACUAGCCUU 19069 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2134,sp|AC008427.9|AC008427 Homo sapiens chromosome 5 clone CTC-307M15, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUCAAGUACACAGGUGUUUAUAACUAAUUGAUCACAGCCAGUUAUAGAUUUCUUUGUUCCCCCUCCACUCCUACUGCUUCACUCGACUAGCCUA hit 154 : 125398 125299 (rev) 37.62 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU:C A ::A G U++U+A AA+UAAUUGAU+ACAG +AGUU+ AG+++UC 50104 GGCUGGUUCAAGUACACAGG-UGUUUAUAACUAAUUGAUCACAGCCAGUUAUAGAUUUCU 50162 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC CUCC+C+CC U::U CACU :ACUAGCCU 50163 UUGUUCCCCCUCCACUCCUACUGCUUCACUCGACUAGCCUA 50203 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2174,sp|AC008482.5|AC008482 Homo sapiens chromosome 5 clone CTC-402A15, complete sequence. ----isReversed: 0 ----hitSequence: GGUCUCUCUUGUAAACAGUGAUGUUUACAAGUAAUUGAUCACAACCUAUUACAGAUUUCUUUGUUCCUUCUCCACUCCCCUGCUUCACUUGACUAGCCUA hit 155 : 139198 139297 (fwd) 29.84 bits <<<<<<<<-.----<<<<<<<_______________________________________ 1 ggcugGUcC.GAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUC 59 GG:: UC G A+::AG G U++U+ACAA UAAUUGAU+ACA + UU+CAG+++UC 139198 GGUCUCUCUuGUAAACAGUGA-UGUUUACAAGUAAUUGAUCACAACCUAUUACAGAUUUC 139256 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C C CU::U CACUUGA ::CCU 139257 UUUGUUCCUUCUCCACUC-CCCUGCUUCACUUGACUAGCCUA 139297 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2174,sp|AC008482.5|AC008482 Homo sapiens chromosome 5 clone CTC-402A15, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGCCCAAGUGCAGUGGUGUCUACAACAAAUUGAUCACAACCAGUGGCAGAUUUCUUUGUUCCUUCUCUACUUCCAUUGCUUCACUUGACUAGCCUU hit 156 : 167198 167099 (rev) 47.46 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:G:CC A G:A UGG U++++ACAA+ AAUUGAU+ACA +AGU CAG+++UC 4807 GGCUAGCCCAAGUGCAGUGG-UGUCUACAACAAAUUGAUCACAACCAGUGGCAGAUUUCU 4865 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC +C+ CCA U:CU CACUUG:C:AGCCUU 4866 UUGUUCCUUCUCUACUUCCAUUGCUUCACUUGACUAGCCUU 4906 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2238,sp|AC008558.7|AC008558 Homo sapiens chromosome 5 clone CTC-531G16, complete sequence. ----isReversed: 0 ----hitSequence: AGAUAAUCCAUGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCUUUUCUACUCUUUUUCCAUGCUCACUACUUCACUGGACUAGUCUU hit 157 : 133189 133293 (fwd) 37.59 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 :::U::UCC A GG:AGUG:GUUAUC CAAUU+AUUG+U+A GU+AGUU+CAG+++ 133189 AGAUAAUCC-AUGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAGUUACAGAUUgaa 133245 __________.....__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + CUU UUCU UU UCC+ C:CACU:CU CACU GA::A:::UU 133246 CUCUU-UUCUacucuUUUUCCAUGCUCACUACUUCACUGGACUAGUCUU 133293 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2313,sp|AC008654.5|AC008654 Homo sapiens chromosome 5 clone CTB-191B18, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUCAAAGGUAGAGAGUUAUCUCAAUGAUUUGUUGACUGUCAGUUACUGAUCAAACUCCUUGUUCUACCCUUUCCCCUCUUCUCACUACUGUAGUUGACUAGUCUU hit 158 : 55274 55164 (rev) 49.27 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU:C AAGG:AG G:GUUAUC CAAU A UUG+U AC GU+AGUU+C G++ 8487 GGCUGGUUCAAAGGUAGAGAGUUAUCUCAAUGAUUUGUUGACUGUCAGUUACUGAUCaaa 8546 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C:C CU:CUG A UU:ACUAG:CUU 8547 cUCCUUGUUCUacccuuUCCCCUCUUCUCACUACUGUAGUUGACUAGUCUU 8597 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2374,sp|AC008733.9|AC008733 Homo sapiens chromosome 19 clone CTD-2525J15, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCCAAGUGCAAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCAUUCUCACUGCUUUGCUUGAUUAGUCUU hit 159 : 30801 30701 (rev) 49.02 bits <<<<<<<<-----<<<.<<<<_______________________________________ 1 ggcugGUcCGAAggua.gUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUC 59 G:CU: UCC A G:A GUG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 158686 GGCUAGUCCAAGUGCAaGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUC 158744 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +C CACU:CU CUUGA :AG:CUU 158745 UUUGUUCCUUCUCCAUUCUCACUGCUUUGCUUGAUUAGUCUU 158786 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2400,sp|AC008760.7|AC008760 Homo sapiens chromosome 19 clone CTD-3128G10, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUGUUCACAACCAGUUACAUAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAUCCUA hit 160 : 8733 8634 (rev) 65.77 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG UGGUCC A G:AGUGG U++U+ACAA+UAAUUG+U+ACA +AGUU+CA +++UC 191435 GGCUGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUGUUCACAACCAGUUACAUAUUUCU 191493 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUGACUA CCU 191494 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAUCCUA 191534 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2445,sp|AC008819.7|AC008819 Homo sapiens chromosome 5 clone CTD-2126M20, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAAUGGUGUUUAAACUAAUUGAUCACAAUGUUAUGGAUUUCUUUGUUCCUCCUCCACUCCCAUUGCUUCACUUGACUAGCCUU hit 161 : 31353 31257 (rev) 47.74 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA G:A:UGG U++U+A AA+UAAUUGAU+ACA U GUU+ G+++UC 85493 GGCUGGUCUGAGUGCAAUGG-UGUUUA-AACUAAUUGAUCACAAU--GUUAUGGAUUUCU 85548 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U CUCC+C+CCCA:U:CU CACUUGACUAGCCUU 85549 UUGUUCCUCCUCCACUCCCAUUGCUUCACUUGACUAGCCUU 85589 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2468,sp|AC008847.7|AC008847 Homo sapiens chromosome 5 clone CTD-2168H23, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGUCUGAAGGUAGCCAGUGAUCUCAAUGAAUUGUACAGUUACAGAUUGAACUCCUUGUUCUAUCCUUUCCCCCUUCUCACUACUGCACUUGACCAGAUUU hit 162 : 26156 26259 (fwd) 42.25 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + :U:GUC GAAGG:AG: :GU+AUC CAAU AAUU UAC AGUU+CAG+++ 26156 GGUUGGUCUGAAGGUAGCCAGUGAUCUCAAUGAAUU--GUAC----AGUUACAGAUUgaa 26209 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCC +C: :CU:CUGCACUUGAC:A: +UU 26210 cUCCUUGUUCUauccuUUCCCCCUUCUCACUACUGCACUUGACCAGAUUU 26259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2469,sp|AC008848.9|AC008848 Homo sapiens chromosome 19 clone CTD-2168K3, complete sequence. ----isReversed: 1 ----hitSequence: AGAUGGUCGGAAGGUAGUGAGUUAUCUCCAUUGAUUGUUCACAGUCAGUUAUGAAUUGAACUCCUUGUUCUAUUCUUCCCCCUCUUCUCACUACUGUACUUGUCUUUUUUU hit 163 : 40171 40061 (rev) 51.21 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::: GG C GAAGG:AGUG:GUUAUC C AUU+AUUG+U+ACAGU+AGUU+ G+A+ 27226 AGAUGGUCGGAAGGUAGUGAGUUAUCUCCAUUGAUUGUUCACAGUCAGUUA-UGAAUuga 27284 ..__________.__________.....>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU.UUCUccCCCC.....ccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUCU+CCCCC :CACU:CUG ACUUG CU :::UU 27285 acUCCUUGUUCUaUUCUUCCCCCucuucUCACUACUGUACUUGUCUUUUUUU 27336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2470,sp|AC008850.7|AC008850 Homo sapiens chromosome 5 clone CTD-2172I6, complete sequence. ----isReversed: 0 ----hitSequence: AGUUGGUCCCAGUGCAGUGGUAUUUACAACUAAUGGAUCACAACCAGUUACAGGCUUAUUUGUUCCUUCUCCACCCUCAUUGCUUCACUUGACUAGCCUG hit 164 : 84629 84728 (fwd) 48.07 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G:UGGUCC A G:A UG U +U+ACAA+UAAU GAU+ACA +AGUU+CAG +U 84629 AGUUGGUCCCAGUGCAGUGG-UAUUUACAACUAAUGGAUCACAACCAGUUACAGGCUUAU 84687 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+CCC CA U:CU CACUUGACUA:C:U 84688 UUGUUCCUUCUCCACCCUCAUUGCUUCACUUGACUAGCCUG 84728 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2627,sp|AC009053.7|AC009053 Homo sapiens chromosome 16 clone RP11-252A24, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCGGUGCUGUUUACAACUAAUUGAUCACAGCUACUUACAGAUUUAUUUGUUCUUCUACAUUCCUGUUGCUUCACUUGACUAGCCUU hit 165 : 321 419 (fwd) 46.77 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:: U++U+ACAA+UAAUUGAU+ACAG UA UU+CAG+++U 321 GGCUGGUCCAAGUGCGGUGC-UGUUUACAACUAAUUGAUCACAGCUACUUACAGAUUUAU 379 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+ +C ::CU CACUUGACUAGCCUU 380 UUGUUC-UUCUACAUUCCUGUUGCUUCACUUGACUAGCCUU 419 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2636,sp|AC009065.8|AC009065 Homo sapiens chromosome 16 clone RP11-304L19, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAGCACAGUGGUGUUCACAACGAAUUGAUCACAGCCAGGUAGAAUUCUUCAUUCUUUCUCCAGUCCUACUGCUUUGCUUGACCAGCCUU hit 166 : 145561 145464 (rev) 36.02 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GUCC A ::AGU G U++UCACAA+ AAUUGAU+ACAG +AG U+ G+A+UC 54199 AGCUGGUCCAAGCACAGUGG-UGUUCACAACGAAUUGAUCACAGCCAGGUA--GAAUUCU 54255 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UUCUUUCUCC+ +CC ACU::U CUUGAC:AGC:UU 54256 UCAUUCUUUCUCCAGUCCUACUGCUUUGCUUGACCAGCCUU 54296 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2647,sp|AC009082.7|AC009082 Homo sapiens chromosome 16 clone RP11-354N7, complete sequence. ----isReversed: 1 ----hitSequence: UCAUGCUCCAGUGCAGUGGUAUUUACAACUAAUUAAUCACAACCAGUUACAGAUUUCUUUGACCCCUUUCCGCUCCGACUGCUUCACUUGACUAGACUU hit 167 : 158555 158457 (rev) 36.28 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : :UG UCC A G:AGU G U +U+ACAA+UAAUU AU+ACA +AGUU+CAG+++UC 1723 UCAUGCUCC-AGUGCAGUGG-UAUUUACAACUAAUUAAUCACAACCAGUUACAGAUUUCU 1780 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG C U UCC C+CC ACU:CU CACUUGA UA: :UU 1781 UUGACCCCUUUCCGCUCCGACUGCUUCACUUGACUAGACUU 1821 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2673,sp|AC009121.8|AC009121 Homo sapiens chromosome 16 clone RP11-485G7, complete sequence. ----isReversed: 1 ----hitSequence: GUCUGGUCUGAAGGUAGUAAGUUAUCUCAGUCAAUUGUUCACAGGCAGUUACAGAUCCAACUCCUCAUUUUACUCUUUCCCCUUUCUCAUGACUGCACUUGACUAGUCUA hit 168 : 48936 48827 (rev) 42.51 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G CUGGUC GAAGG: U::GUUAUC CA U AAUUG+U+ACAG +AGUU+CAG++ 82552 GUCUGGUCUGAAGGUAGUAAGUUAUCUCAGUCAAUUGUUCACAGGCAGUUACAGAUCcaa 82611 ....__________..__________>>>>>>>------->>>>>>>>:: 58 ....UCcUUgUUCU..UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UU+U CU UUC+CC +C::A :CUGCACUUGACUAG CU 82612 cuccUCAUUUUACUcuUUCCCCUUUCUCAUGACUGCACUUGACUAGUCUA 82661 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2679,sp|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10, complete sequence. ----isReversed: 1 ----hitSequence: CGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACUAGUUACAGAUUAUUUGUUCCUUCUCCACUCUCACUGCUUCACUUGACUAGCUUU hit 169 : 33568 33470 (rev) 67.35 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GCUGGUCCGA G:AGUG U++U+ACAA+UAAUUGAU+ACA UAGUU+CAG+++ 147268 CGCUGGUCCGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACUAGUUACAGAUU-AU 147325 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C CACU:CU CACUUGACUAGC UU 147326 UUGUUCCUUCUCCACUCUCACUGCUUCACUUGACUAGCUUU 147366 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2685,sp|AC009137.8|AC009137 Homo sapiens chromosome 16 clone RP11-521L9, complete sequence. ----isReversed: 1 ----hitSequence: UCAUGCUCCAGUGCAGUGGUAUUUACAACUAAUUAAUCACAACCAGUUACAGAUUUCUUUGACCCCUUUCCGCUCCGACUGCUUCACUUGACUAGACUU hit 170 : 22767 22669 (rev) 36.28 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : :UG UCC A G:AGU G U +U+ACAA+UAAUU AU+ACA +AGUU+CAG+++UC 151985 UCAUGCUCC-AGUGCAGUGG-UAUUUACAACUAAUUAAUCACAACCAGUUACAGAUUUCU 152042 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG C U UCC C+CC ACU:CU CACUUGA UA: :UU 152043 UUGACCCCUUUCCGCUCCGACUGCUUCACUUGACUAGACUU 152083 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2695,sp|AC009153.10|AC009153 Homo sapiens chromosome 16 clone RP11-572F4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCGGUGCUGUUUACAACUAAUUGAUCACAGCUACUUACAGAUUUAUUUGUUCUUCUACAUUCCUGUUGCUUCACUUGACUAGCCUU hit 171 : 89300 89398 (fwd) 46.77 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:: U++U+ACAA+UAAUUGAU+ACAG UA UU+CAG+++U 89300 GGCUGGUCCAAGUGCGGUGC-UGUUUACAACUAAUUGAUCACAGCUACUUACAGAUUUAU 89358 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+ +C ::CU CACUUGACUAGCCUU 89359 UUGUUC-UUCUACAUUCCUGUUGCUUCACUUGACUAGCCUU 89398 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2702,sp|AC009162.11|AC009162 Homo sapiens chromosome 16 clone RP11-76H6, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUUCGAAGGUAGUGUGUUAUUUCAGUUGAUUGCUCACUGUCAGUUACAGGUUGAACUCCUUGUUCUACUCUGUCCCCCUUCUUGCCACUGCACUUGACUAGUUUA hit 172 : 68279 68388 (fwd) 44.73 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGGU:CGAAGG: G GUUAU+ CA UU+AUUG U+AC GU+AGUU+CAG ++ 68279 GGCUGGUUCGAAGGUAGUGUGUUAUUUCAGUUGAUUGCUCACUGUCAGUUACAGGUUgaa 68338 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UC+CCC +C C :CUGCACUU:ACUAG:+U 68339 cUCCUUGUUCUacucuGUCCCCCUUCUUGCCACUGCACUUGACUAGUUUA 68388 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2720,sp|AC009194.9|AC009194 Homo sapiens, clone RP11-44B13, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCCAAGUGCAAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCAUUCUCACUGCUUUGCUUGAUUAGUCUU hit 173 : 177772 177872 (fwd) 49.02 bits <<<<<<<<-----<<<.<<<<_______________________________________ 1 ggcugGUcCGAAggua.gUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUC 59 G:CU: UCC A G:A GUG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 177772 GGCUAGUCCAAGUGCAaGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUC 177830 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +C CACU:CU CUUGA :AG:CUU 177831 UUUGUUCCUUCUCCAUUCUCACUGCUUUGCUUGAUUAGUCUU 177872 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2782,sp|AC009309.4|AC009309 Homo sapiens BAC clone RP11-301O19 from 2, complete sequence. ----isReversed: 0 ----hitSequence: UGCUCGUCCAAAGGUAGUGAGUUAGCUCAGUUGAUUGUUCACAGUCAGUUACGGAUCGAACAGUCUCGUUCUAGUCUUUCCUCCCUUACUAUUGCACUUGACUAGUCUU hit 174 : 60508 60616 (fwd) 36.88 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CU:GUCC AAG :AGU :GUUA C CA UU+AUUG+U+ACAGU+AGUU+C G++ 60508 UGCUCGUCCAAAGGUAGUGAGUUAGCUCAGUUGAUUGUUCACAGUCAGUUACGGAUCgaa 60567 ..__________...__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CU GUUCU U UCC CCC: ACU: UGCACUUGAC:AG::UU 60568 caGUCUCGUUCUaguCUUUCCUCCCUUACUAUUGCACUUGACUAGUCUU 60616 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2822,sp|AC009413.2|AC009413 Homo sapiens BAC clone RP11-459K11 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGGCCGAGUGCAGUGGUGUUUACAAAUAAUUGAUCACAACCAGCUAUAGACUUCUUUGUUUCUUCUCUAUCUCCUUUGCUUCACUUGACUAGCCUU hit 175 : 34105 34204 (fwd) 45.95 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:UGG:CCGA G:A GG U++U+ACAA UAAUUGAU+ACA +AG U+ AG+ +UC 34105 GGUUGGGCCGAGUGCAGUGG-UGUUUACAAAUAAUUGAUCACAACCAGCUAUAGACUUCU 34163 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUC + C CC U:CU CACUUG:CUA:CCUU 34164 UUGUUUCUUCUCUAUCUCCUUUGCUUCACUUGACUAGCCUU 34204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2855,sp|AC009481.4|AC009481 Homo sapiens BAC clone RP11-303D3 from 1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGGGUAAUGAGUUAUUUCAAUUGAUUGUUCAGUCAGUUACAGAUCAAACUCCUUGUUCUACUCUUUGCCUGCUUCUCACUACUGCACAUGACUAGUAAA hit 176 : 108478 108586 (fwd) 46.63 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 :CUGGUC GA GG:A:UG:GUUAU+ CAAUU+AUUG+U+A GU+AGUU+CAG++ 108478 GGCUGGUCUGAGGGUAAUGAGUUAUUUCAAUUGAUUGUUCA--GUCAGUUACAGAUCaaa 108535 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CA:U:CUGCAC UGACUAG: 108536 cUCCUUGUUCUacucuuUGCCUGCUUCUCACUACUGCACAUGACUAGUAAA 108586 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2878,sp|AC009506.5|AC009506 Homo sapiens BAC clone RP11-542H1 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGAUCUGAGAGCCCUGGUGUUUACACCUAAUUGUUCACAACCAGUGACAGAUUUCUUUGUUUUUUUCUCCACUCCCACUACUUUGCUUGACUAGCCUU hit 177 : 89955 89855 (rev) 48.34 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG:UC GA +G : UGG U++U+ACA +UAAUUG+U+ACA +AGU +CAG+++UC 101810 GGCUGAUCUGAGAGCCCUGG-UGUUUACACCUAAUUGUUCACAACCAGUGACAGAUUUCU 101868 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU U UUCUCC+C+CCCA : CU CUUGA:UAGCCUU 101869 UUGUUUUuUUCUCCACUCCCACUACUUUGCUUGACUAGCCUU 101910 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2881,sp|AC009509.7|AC009509 Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUAAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUUCAGUUACAGAUUGAAUGCCUUGUUCUGCUCUUACCCCGUUCUCACUACUCGACUAGCCUA hit 178 : 166778 166888 (fwd) 41.20 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 GGCUGGUC AAGG:AGUG:GUUAUC CA UU+AUUG+U+ACAGU+AGUUUCAGU+A 166778 GGCUGGUCUAAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUUCAGUUAcag 166837 .......__________.....__________>>>>>>>------->>>>>>>>:: 58 .......UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CCUUGUUCU U C+CC +C:CACU:CU+ GACUAGCCU 166838 auugaauGCCUUGUUCUgcucuUACCCCGUUCUCACUACUC-----GACUAGCCUA 166888 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2890,sp|AC009530.5|AC009530 Homo sapiens chromosome 7 clone RP11-302L6, complete sequence. ----isReversed: 1 ----hitSequence: GUUUGGUCCAAGUGCCGAGGUGUUUACAACUAAUUGAUCUUAACCAUUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUACUUCACUUGACUAGCCUU hit 179 : 156180 156081 (rev) 53.68 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G :UGGUCC A G :G GG U++U+ACAA+UAAUUGAU+ +A +A UU+CAG+++UC 33474 GUUUGGUCCAAGUGCCGAGG-UGUUUACAACUAAUUGAUCUUAACCAUUUACAGAUUUCU 33532 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCC C: CU CACUUGACUA: CUU 33533 UUGUUCCUUCUCCACUCCCACUACUUCACUUGACUAGCCUU 33573 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2912,sp|AC009634.9|AC009634 Homo sapiens chromosome 8, clone RP11-413C18, complete sequence. ----isReversed: 0 ----hitSequence: GACUGGUCUAAAGGUAGUGAGUUAUCACAAUUGACUGUUCACAGUUACAGAUGGAACUCCUUGUUCUACUACUUCCCCCUUCUCACUAAGUCACUUGACCGGUCAA hit 180 : 66449 66554 (fwd) 44.49 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C::GUC AAG :AGUG:GUUAUCACAAUU+A UG+U+AC AGUU+CAG++ 66449 GACUGGUCUAAAGGUAGUGAGUUAUCACAAUUGACUGUUCAC----AGUUACAGAUGgaa 66504 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCC +C:CACU: CACUUGAC::G:C 66505 cUCCUUGUUCUacuacUUCCCCCUUCUCACUAAGUCACUUGACCGGUCAA 66554 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2948,sp|AC009753.5|AC009753 Homo sapiens chromosome 15 clone RP11-416K5 map 15q21.1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUACCUCAAUUGAUUGUUCACAGUUAUAGAUCAAACUUCUUGUUCUACUCUUUCCCCUCUUCUCACUACUGUACUUGACUAGUCUU hit 181 : 128802 128908 (fwd) 56.14 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 G:CUGGUC GAAGG:AGUG:GUUA+C CAAUU+AUUG+U+ACAGUUA + ++AA U 128802 GGCUGGUCUGAAGGUAGUGAGUUACCUCAAUUGAUUGUUCACAGUUAUAGA-UCAAAcUU 128860 ________......__________>>>>>>>------->>>>>>>>:: 60 cUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUCU U C+C C +C:CACU:CUG ACUUGACUAG:CUU 128861 CUUGUUCUacucuuUCCCCUCUUCUCACUACUGUACUUGACUAGUCUU 128908 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2976,sp|AC009812.17|AC009812 Homo sapiens chromosome 8, clone RP11-48B3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCCAAGGUAGUGAAUUGUCUCAAUUGGUUAUUCACAGUUGGUUGCCCGUUGUACCACUCUUUCCCCACUUCCACUUGACUAGUCUU hit 182 : 89378 89470 (fwd) 28.49 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCC AAGG+AGUG UU UC CAAUU+ UU +U+ACAGUU+GUU C CC 89378 GGCUGGUCCCAAGGUAGUGAAUUGUCUCAAUUGGUUAUUCACAGUUGGUUGC------CC 89431 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++U+ CUC CC CACU+C C UUGACUAG:CUU 89432 GUUGUACCACUCUUUCCCCACUUCCAC--UUGACUAGUCUU 89470 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2980,sp|AC009852.9|AC009852 Homo sapiens chromosome 15 clone RP11-402F9 map 15q15, complete sequence. ----isReversed: 0 ----hitSequence: CACGGGUCCAAGUGCAGUGGUGUUUACAACUAAUUCAUCACAACAAGUUACAGAUUUCUUUGUUCCUUUUCCAUUCCCACUGCUUCACUUGACUAGCCCU hit 183 : 81472 81571 (fwd) 52.42 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :C GGUCC A G:AGUGG U++U+ACAA+UAAUU AU+ACA AGUU+CAG+++UC 81472 CACGGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUCAUCACAACAAGUUACAGAUUUCU 81530 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UU UCC+ +CCCACU:CU CACUUGACU G: U 81531 UUGUUCCUUUUCCAUUCCCACUGCUUCACUUGACUAGCCCU 81571 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2992,sp|AC009898.6|AC009898 Homo sapiens chromosome 8, clone RP11-138H14, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGCUACAGAUCAAAAUCCUUCUACUCUUUUCCCCUUCUCACUACGGUACUUGAAUAGCCUU hit 184 : 133396 133502 (fwd) 56.98 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 GGCUG UC GAAGG:AGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AG U+CAG++ 133396 GGCUGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGCUACAGAUCaaa 133455 .__________..__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU..UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU U CU UU +CCC +C:CACU:C G ACUUGA UAGCCUU 133456 aUCCUUCUACUcuUUUCCCCUUCUCACUACGGUACUUGAAUAGCCUU 133502 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3069,sp|AC010127.12|AC010127 Homo sapiens BAC clone RP11-2I8 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUCCAAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUACGCUUUCCCCUCUUCUCACUACUGCUCUUGUCUAAAAAC hit 185 : 178264 178154 (rev) 44.53 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::+UG: CC AAGG:AGUG:GUUAUC CA UU+AUUG+U+ACAGU+AGUU+CAG++ 11803 AACUGAUCCAAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUACAGAUCaaa 11862 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C:CACU:CUGC CUUG :UA+:: 11863 cUCCUUGUUCUacgcuuUCCCCUCUUCUCACUACUGCUCUUGUCUAAAAAC 11913 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3091,sp|AC010150.3|AC010150 Homo sapiens BAC clone RP11-404P12 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGGCAGCUAGUUAUCUCAGCUGAUUGUUCACAGUCAGUCACGGAUCGAAGUCUUUGUUGAACUCUUUCCCUCCUUCUCAUUACUGUACUUGACCAGUCUA hit 186 : 97299 97409 (fwd) 36.43 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU:GUCC AAGG A :::GUUAUC CA +U+AUUG+U+ACAGU+AGU +C G++ 97299 GGCUGGUCCAAAGGCAGCUAGUUAUCUCAGCUGAUUGUUCACAGUCAGUCACGGAUCgaa 97358 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUU + U C++CC +C::: U CUG ACUUGAC:AG:CU 97359 gUCUUUGUUGAacucuuUCCCUCCUUCUCAUUACUGUACUUGACCAGUCUA 97409 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3104,sp|AC010177.48|AC010177 Homo sapiens 12 BAC RP11-162N7 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAGAAGUUAGUGAGUUAUCUCAAUUGAUUGUUCACAGAUCAGUUCCAGACUGAACUCCUUAUUCUAUUCCUUCUCCUUUUCUCACUACUGUAUUUGACUAGUCUU hit 187 : 10524 10635 (fwd) 48.91 bits <<<<<<<<-----<<<<<<<________________________._____________.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAg.UUAGUUUCAguAa.. 57 G:CUGGUC GAAG::AGUG:GUUAUC CAAUU+AUUG+U+ACAG U+AGUU CAG+ + 10524 GGCUGGUCAGAAGUUAGUGAGUUAUCUCAAUUGAUUGUUCACAGaUCAGUUCCAGACUga 10583 ..__________.....______.____>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU.....UUCUcc.CCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU UUCU UUCUCC +C:CACU::UG A UUGACUAG:CUU 10584 acUCCUUAUUCUauuccUUCUCCuUUUCUCACUACUGUAUUUGACUAGUCUU 10635 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3122,sp|AC010205.6|AC010205 Homo sapiens 12 BAC RP11-285E23 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAUGGUAGUCAGUUAUCUCAAUUGAUUGCUCACAGUCAGUUACAGGUCAAACUCCUUGUUCUUCUCUUUUCCCCCCUCACUACUGUACUUGGCUAGUCUA hit 188 : 47313 47421 (fwd) 59.06 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG CC A GG:AGU :GUUAUC CAAUU+AUUG U+ACAGU+AGUU+CAG + 47313 GGCUGGUCCAAUGGUAGUCAGUUAUCUCAAUUGAUUGCUCACAGUCAGUUACAGGUCaaa 47372 .__________....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UU UCCCCCC: ACU:CUG ACUUG CUAG:CU 47373 cUCCUUGUUCUucucUUUUCCCCCCUCACUACUGUACUUGGCUAGUCUA 47421 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3145,sp|AC010240.7|AC010240 Homo sapiens chromosome 5 clone CTC-350I8, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUUCGAAGGUAGUCAGUUAUCUCAACUGAUUGUUCACAGUCAAGUUAUAGACUGAACCCCUUGCUCUAGUCUUUGACCCCUUCUCACUCCCACACUUGACUGCCUA hit 189 : 49821 49931 (fwd) 39.82 bits <<<<<<<<-----<<<<<<<__________________________.___________.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUU.AGUUUCAguAa.. 57 GGCUGGU:CGAAGG:AGU :GUUAUC CAA+U+AUUG+U+ACAGU+ AGUU+ AG+ + 49821 GGCUGGUUCGAAGGUAGUCAGUUAUCUCAACUGAUUGUUCACAGUCaAGUUAUAGACUga 49880 ..__________......__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +CCUUG UCU U +CCC +C: ACU:C CACUU:ACU GCCU 49881 acCCCUUGCUCUagucuuUGACCCCUUCUCACUCCCACACUUGACU-GCCUA 49931 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3145,sp|AC010240.7|AC010240 Homo sapiens chromosome 5 clone CTC-350I8, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUCCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCAUUGUUUCAUUUGGCUAGCCUA hit 190 : 97683 97584 (rev) 56.13 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG CC A :A UGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 14964 GGCUGGUCCAAGUCCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 15022 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCA U: U CA UUG CUAGCCU 15023 UUGUUCCUUCUCCACUCCCAUUGUUUCAUUUGGCUAGCCUA 15063 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3169,sp|AC010271.8|AC010271 Homo sapiens chromosome 19 clone CTC-492K19, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGUAGUGAAUUAUCUCAAUUGACUGUUCAUAGUCCUUUACAGAUGGAACUCCUUAUUCUACUCUUUCUCCUUUUCUCACUACUGCAGUUGACUAGUCUU hit 191 : 37709 37819 (fwd) 56.56 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGAAGG:AGUG: UUAUC CAAUU+A UG+U+A+AGU+ UU+CAG++ 37709 GGCUGGUCCGAAGGUAGUGAAUUAUCUCAAUUGACUGUUCAUAGUCCUUUACAGAUGgaa 37768 .__________.....______.____>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUcc.CCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU UUCU UUCUCC +C:CACU:CUGCA UUGACUAG:CUU 37769 cUCCUUAUUCUacucuUUCUCCuUUUCUCACUACUGCAGUUGACUAGUCUU 37819 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3169,sp|AC010271.8|AC010271 Homo sapiens chromosome 19 clone CTC-492K19, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGGUCCCUAGGAACUGAUUGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCCUUCCUACUGCUUCACUUGACUAGCCUU hit 192 : 34543 34440 (rev) 48.10 bits <<<<<<<<-...----<<<<<<<_____________________________________ 1 ggcugGUcC...GAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa 57 G CUGGUCC G A+ U::U:GGU +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++ 126101 GCCUGGUCCcuaGGAACUGAUUGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUU 126160 ____________________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUC UUCUCCC +CC:A::G U CACUUGACUAG CUU 126161 UCUUUGUUCCUUCUCCCUUCCUACUGCUUCACUUGACUAGCCUU 126204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3185,sp|AC010292.8|AC010292 Homo sapiens chromosome 5 clone CTB-131H22, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGCUCCGAGUGCAGUGGUGUUUACAACUAAUGCAUCACAACCAGUUACAGAAUUCUUUAUCCCUUCUCCAUGCCACUGCUUUCCUUGGCCAGCCUU hit 193 : 6520 6422 (rev) 46.03 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU: CCGA G:AGUG GU++U+ACAA+UAAU AU+ACA +AGUU+CAG+A+UC 50248 GGCUGCUCCGAGUGCAGUG-GUGUUUACAACUAAUGCAUCACAACCAGUUACAGAAUUCU 50306 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU U C UUCUCC+ C CACU:CU +CUUG :AGCCUU 50307 UUAUCCCUUCUCCAUGC-CACUGCUUUCCUUGGCCAGCCUU 50346 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3206,sp|AC010320.10|AC010320 Homo sapiens chromosome 19 clone CTD-2525I3, complete sequence. ----isReversed: 1 ----hitSequence: GCCAGGUCCGAAGAUAGUCAGUUAUCUCAAUGGAUUGUUCACAGUCAGUUACAGAUGGAACUCCUUAUUCUACUCUUUCCCCCUUGUCACUACUGCACUUGAUUAGUCUU hit 194 : 102614 102505 (rev) 57.02 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C G UCCGAAG::AGU :GUUAUC CAAU +AUUG+U+ACAGU+AGUU+CAG++ 117845 GCCAGGUCCGAAGAUAGUCAGUUAUCUCAAUGGAUUGUUCACAGUCAGUUACAGAUGgaa 117904 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU UUCU UUC+CCC + : ACU::UGCACUUGA U G:CUU 117905 cUCCUUAUUCUacucuUUCCCCCUUGUCACUACUGCACUUGAUUAGUCUU 117954 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3252,sp|AC010378.6|AC010378 Homo sapiens chromosome 5 clone CTD-2062A1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAAUAUGAAUGAUGUGAUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUCCCUUUUCCGUGCCCACUGCUUCACCUGACUAGCCUU hit 195 : 77882 77981 (fwd) 40.16 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU::U: GAA G:+GUG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 77882 GGCUAAUAUGAAUGAUGUGA-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 77940 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGU C UU UCC C CAC+:CU CAC U:A::AGCCUU 77941 UUGUCCCUUUUCCGUGCCCACUGCUUCACCUGACUAGCCUU 77981 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3268,sp|AC010408.6|AC010408 Homo sapiens chromosome 5 clone CTD-2156G10, complete sequence. ----isReversed: 0 ----hitSequence: GACUGCUCUGAGUGCAAUGGUGUUUACAACUAACCGAUCACAACCAGUUGCAGAUUUAUUUGUUCUUUUUCCACACUCACUGCUUCAGUUGACUAGCCUU hit 196 : 9498 9597 (fwd) 41.27 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUG UC GA G:A:UG U++U+ACAA+UAA GAU+ACA +AGUU CAG+++U 9498 GACUGCUCUGAGUGCAAUGG-UGUUUACAACUAACCGAUCACAACCAGUUGCAGAUUUAU 9556 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUU UCC+C C CA:U:CU CA UUGA UAG:CUU 9557 UUGUUCUUUUUCCACACUCACUGCUUCAGUUGACUAGCCUU 9597 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3295,sp|AC010443.8|AC010443 Homo sapiens chromosome 5 clone CTD-2231H16, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCUGAAGGUAGUGAGUUAUCUCAUUUGAUUGUUCACACACAUUACAGAUCAAACACCUUAUUCUAUUCUUUCCCCCUUCUCACUACUACACUUGACUAGUCUU hit 197 : 7637 7745 (fwd) 49.48 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUC GAAGG:AGUG:GUUAUC CA UU+AUUG+U+ACA +A UU+CAG++ 7637 AGCUGGUCUGAAGGUAGUGAGUUAUCUCAUUUGAUUGUUCACACACA-UUACAGAUCaaa 7695 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CCUU UUCU UUC+CCC +C:CACU:CU CACUUGACUAG::UU 7696 cACCUUAUUCUauucuUUCCCCCUUCUCACUACUACACUUGACUAGUCUU 7745 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3307,sp|AC010460.7|AC010460 Homo sapiens chromosome 5 clone CTD-2272G21, complete sequence. ----isReversed: 0 ----hitSequence: GGCUUGUCCAGAGAUAACGCAUUAUCUCAAUUGAUUGUUCACAGUCACAGAUCGAACUUCUGUUCUACUCUUUUCCUCCUUCUCAUUAUUGCACUUGACUAGUCUU hit 198 : 73681 73786 (fwd) 33.19 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CU GUCC AG::A::G UUAUC CAAUU+AUUG+U+ACAGU+A + G+A U C 73681 GGCUUGUCCAGAGAUAACGCAUUAUCUCAAUUGAUUGUUCACAGUCACAGAUCGAACUUC 73740 _______......__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U+ UUCU UUC++CC +C C::U::UGCACUUGAC AG:CUU 73741 UG-UUCUacucuuUUCCUCCUUCUCAUUAUUGCACUUGACUAGUCUU 73786 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3328,sp|AC010488.7|AC010488 Homo sapiens chromosome 16 clone CTD-2332D4, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCCAAGCACAGUGGUGUUCACAACGAAUUGAUCACAGCCAGGUAGAAUUCUUCAUUCUUUCUCCAGUUCCACUGCUUUGCUUGACCAGCCUU hit 199 : 38265 38362 (fwd) 38.09 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GUCC A ::AGUGG U++UCACAA+ AAUUGAU+ACAG +AG U+ G+A+UC 38265 AGCUGGUCCAAGCACAGUGG-UGUUCACAACGAAUUGAUCACAGCCAGGUA--GAAUUCU 38321 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UUCUUUCUCC+ + CCACU::U CUUGAC:AGC:UU 38322 UCAUUCUUUCUCCAGUUCCACUGCUUUGCUUGACCAGCCUU 38362 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3340,sp|AC010503.8|AC010503 Homo sapiens chromosome 19 clone CTD-2396E7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUGUUCACAACCAGUUACAUAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAUCCUA hit 200 : 136747 136648 (rev) 65.77 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG UGGUCC A G:AGUGG U++U+ACAA+UAAUUG+U+ACA +AGUU+CA +++UC 4549 GGCUGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUGUUCACAACCAGUUACAUAUUUCU 4607 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUGACUA CCU 4608 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAUCCUA 4648 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3409,sp|AC010619.7|AC010619 Homo sapiens chromosome 19 clone CTD-3148I10, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCUGAGUGCAGCAAUGUUUACAACUAAUUGAUCACAACCAGCUACAGAUUUCUUUGUUCCUUUCCACUUCCACUCCUUCACUUGACCAGCCUU hit 201 : 153843 153941 (fwd) 44.36 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:G:C GA G AG:: U++U+ACAA+UAAUUGAU+ACA +AG U+CAG+++UC 153843 GGCUGGGCUGAGUGCAGCAA-UGUUUACAACUAAUUGAUCACAACCAGCUACAGAUUUCU 153901 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U UCC+C+ ::CU CU CACUUG:C:AGCCUU 153902 UUGUUC-CUUUCCACUUCCACUCCUUCACUUGACCAGCCUU 153941 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3440,sp|AC010674.11|AC010674 Homo sapiens chromosome 15 clone RP11-430B1 map 15q21.1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCCGAGUGCAAUGGUGUUUACUACUAAUUGAUUACAACCAGUUACAGAUUUCUUUGUUUCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 202 : 32974 33073 (fwd) 62.48 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG:UCCGA G:A:UGG U++U+AC A+UAAUUGAUUACA +AGUU+CAG+++UC 32974 GGCUGAUCCGAGUGCAAUGG-UGUUUACUACUAAUUGAUUACAACCAGUUACAGAUUUCU 33032 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUCC+C+CCCA:U:CU CACUUGA:UAGCCUU 33033 UUGUUUCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 33073 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3462,sp|AC010731.3|AC010731 Homo sapiens BAC clone RP11-363B11 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUUGUCCAAAGGUAGUGAGUUAUCUCAGUAGAUUGUUUAGUCAGUUACAGAUUGAAUACAGAUUGAACUUCUUGAUCUACUCUUUCCUGCUUCUCACUACUGCACUUGAAUAGUCUU hit 203 : 110757 110639 (rev) 44.03 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU UCC AAGG:AGUG:GUUAUC CA U +AUUG+UUA GU+AGUU+CAG+++ 18061 GGCUUGUCCAAAGGUAGUGAGUUAUCUCAGUAGAUUGUUUA--GUCAGUUACAGAUUgaa 18118 ............__________.....__________>>>>>>>------->>>>>>>>: 58 ............UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccU 100 U CUUG UCU UUC++ C +C:CACU:CUGCACUUGA AG:CU 18119 uacagauugaacUUCUUGAUCUacucuUUCCUGCUUCUCACUACUGCACUUGAAUAGUCU 18178 : 101 U 101 U 18179 U 18179 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3487,sp|AC010799.15|AC010799 Homo sapiens chromosome 15, clone RP11-40J8, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGGGUGUACAAGGAAUUGAUUACAAGCAGUUACAGGUUUCUUUGCUCCUUUUCCAUUUCCACUGCUGCUUCACUUCACUAGCCUU hit 204 : 101882 101984 (fwd) 45.20 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU GA G:AGUGGG U U ACAA AAUUGAUUACA +AGUU+CAG ++UC 101882 GGCUGGUCUGAGUGCAGUGGGGUGU-ACAAGGAAUUGAUUACAAGCAGUUACAGGUUUCU 101940 _________________>>>>>>>---...---->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 UUG UC UU UCC+ + CCACU:CUGC ACUU ACUAGCCUU 101941 UUGCUCCUUUUCCAUUUCCACUGCUGCuucACUUCACUAGCCUU 101984 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3493,sp|AC010853.11|AC010853 Homo sapiens chromosome 18, clone RP11-349D12, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCUAAGGUAGUGUGUUAUCAAUUGAUCAAAGUCAGUUACAGAUCGAACUCCUUGAUCUACUCUUUCCUCCUGCUCACUACUGCACUUGACUAGUCCA hit 205 : 89287 89390 (fwd) 49.68 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCC AAGG:AGUG GUUAUCA AUUGAU+A AGU+AGUU+CAG++ 89287 GGCUGGUCCUAAGGUAGUGUGUUAUCA------AUUGAUCAAAGUCAGUUACAGAUCgaa 89340 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU UUC++CC C CACU:CUGCACUUGACUAG:C 89341 cUCCUUGAUCUacucuUUCCUCCUGCUCACUACUGCACUUGACUAGUCCA 89390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3552,sp|AC010980.8|AC010980 Homo sapiens BAC clone RP11-384O8 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GUAGGGUCCAAAGGUAGUGAGUUAAGGCAAUUGAUUGUUCAUAGUCAGUUACAGAUUUAACUCCUUGUUCUACUCUUUCCUUUCUUCUCACUACUACGCAUGACUAGUUUU hit 206 : 162137 162247 (fwd) 49.56 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + : GGUCC AAGG:AGUG:GUUA CAAUU+AUUG+U+A+AGU+AGUU+CAG+++ 162137 GUAGGGUCCAAAGGUAGUGAGUUAAGGCAAUUGAUUGUUCAUAGUCAGUUACAGAUUuaa 162196 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CU+ C +C:CACU:CU C C UGACU : +UU 162197 cUCCUUGUUCUacucuuUCCUUUCUUCUCACUACUACGCAUGACUAGUUUU 162247 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3566,sp|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGGGAGUGAGUUAUCUCAUUUGAUUGUUCACAGUCAGCUACAGAUCCAACUCCUUGUUCUACUCUUUCCCCCCUUCUCACUGCUGCACUUGACUAGACUA hit 207 : 90365 90475 (fwd) 59.51 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G CUGGUCC AAGG AGUG:GUUAUC CA UU+AUUG+U+ACAGU+AG U+CAG++ 90365 GGCUGGUCCAAAGGGAGUGAGUUAUCUCAUUUGAUUGUUCACAGUCAGCUACAGAUCcaa 90424 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CACU CUGCACUUGACUAG CU 90425 cUCCUUGUUCUacucuuUCCCCCCUUCUCACUGCUGCACUUGACUAGACUA 90475 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3609,sp|AC011230.3|AC011230 Homo sapiens BAC clone CTD-2324K8 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGCAGUGAGUUAUCUCAAUUGAUUGUUCAUAGUUACAGAUUGAACUUGUUGUUCCACUCUUCCCUGCCUUCUCUCUACUGCACUUGACUAGUCUA hit 208 : 23513 23407 (rev) 45.50 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAGG AG G:GUUAUC CAAUU+AUUG+U+A+ AGUU+CAG+++ 67799 GGCUGGUCUGAAGGCAGUGAGUUAUCUCAAUUGAUUGUUCAU----AGUUACAGAUUgaa 67854 .__________...._____.._____>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUc..cCCCCccAcugcUgcaCUUgACuagccUU 101 U UUGUUC UUC+C CC +C:C CU CUGCACUUGACUAG:CU 67855 cUUGUUGUUCCacucUUCCCugCCUUCUCUCUACUGCACUUGACUAGUCUA 67905 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3693,sp|AC011365.5|AC011365 Homo sapiens chromosome 5 clone CTC-558O2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUCAAAGGUAGUGAGUUCUCUCAAUGGAUUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUACUCUUUCCUCCUUUUUCACUACUGUACUCAACUAGUCUU hit 209 : 2501 2391 (rev) 55.08 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU:C AAGG:AGUG:GUU UC CAAU +AUUG+U+ACAGU+AGUU+CAG++ 150223 GGCUGGUUCAAAGGUAGUGAGUUCUCUCAAUGGAUUGUUCACAGUCAGUUACAGAUCaaa 150282 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CUCC + :CACU:CUG ACU :ACUAG:CUU 150283 cUCCUUGUUCUacucuuUCCUCCUUUUUCACUACUGUACUCAACUAGUCUU 150333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3707,sp|AC011382.4|AC011382 Homo sapiens chromosome 5 clone CTB-13H5, complete sequence. ----isReversed: 0 ----hitSequence: AGGCUGUCUGAGUGCAGUGGUGUUUACAACAAAUUGAUCACAACCAGUUACAGGUUUCUUUGUUCCUUCUCCACUCCCACUGUUUCACUUGGCUUACCUU hit 210 : 50738 50837 (fwd) 46.19 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G : G C GA :AGUGG U++U+ACAA+ AAUUGAU+ACA +AGUU+CAG ++UC 50738 AGGCUGUCUGAGUGCAGUGG-UGUUUACAACAAAUUGAUCACAACCAGUUACAGGUUUCU 50796 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU: U CACUUG C : C:UU 50797 UUGUUCCUUCUCCACUCCCACUGUUUCACUUGGCUUACCUU 50837 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3785,sp|AC011479.7|AC011479 Homo sapiens chromosome 19 clone CTB-102L5, complete sequence. ----isReversed: 1 ----hitSequence: UGCUGGUCCAAGUGCAGUAGUGUAACAAGUAAUUGAUCACAACCAGUUACAGAGUUCUUUGUUCCUUCUGCUGCUUUCCUUGACCAGCCUG hit 211 : 24834 24744 (rev) 29.67 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GUCC A G:AG : U U ACAA UAAUUGAU+ACA +AGUU+CAG+ +UC 144828 UGCUGGUCCAAGUGCAGU-A-GUGUAACAAGUAAUUGAUCACAACCAGUUACAGAGUUCU 144885 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC C +C: CU:CU +CUUGAC:AGC:U 144886 UUGUUC-------CUUCU-GCUGCUUUCCUUGACCAGCCUG 144918 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3876,sp|AC011603.37|AC011603 Homo sapiens 12 BAC RP11-386G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGGUGGUCCAAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUAGUAUCACUAAAAUUGAUAUGCAACCCCCACUGCUAAAAUUGACAGGCUUA hit 212 : 25971 26063 (fwd) 37.40 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +G : GUCC A GGUAGUGGGUUAUCA AA U AUUA UUAGU UCA+UAA 25971 GGGUGGUCCAAUGGUAGUGGGUUAUCA----GAACUUAUUAACAUUAGUAUCACUAA-AA 26025 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+U C +CCCCCACUGCU +A UUGAC : C+U 26026 UUGAUAU---GCAACCCCCACUGCUAAAAUUGACAGGCUUA 26063 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3936,sp|AC011841.7|AC011841 Homo sapiens chromosome 17, clone RP11-272E10, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUUUCAGUGCAAUGGUGUUUACAACUAAUUGAUCACAACCAGAAUAGAUUUCUUUAUUCUUUUUCCAGUCUCACUGGUUCACUUAGCUAGCCUU hit 213 : 81439 81537 (fwd) 30.79 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG : A :A:UG U++U+ACAA+UAAUUGAU+ACA +AG U AG+++UC 81439 GGCUGGUUUCAGUGCAAUGG-UGUUUACAACUAAUUGAUCACAACCAGAAU-AGAUUUCU 81496 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUCUUU UCC+ +C CA:U: U CACUU: CUAGCCUU 81497 UUAUUCUUUUUCCAGUCUCACUGGUUCACUUAGCUAGCCUU 81537 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3937,sp|AC011846.16|AC011846 Homo sapiens chromosome 15, clone RP11-346A8, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGACCCAAUAGUAGUGGGUUAUCGGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCCCUAACUGCUACAUUUGACUGACAUU hit 214 : 91860 91953 (fwd) 30.66 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G+:G::CC A +GUAGU GUUAUC AA U AUUA UUAGU UCA+UAA 91860 GGCUGACCCAAUAGUAGUGGGUUAUCG----GAACUUAUUAACAUUAGUGUCACUAA-AG 91914 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCC ACUGCU CA UUG::U:+C UU 91915 UUGGUAUa---CAACCCCUAACUGCUACAUUUGACUGACAUU 91953 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3945,sp|AC011893.7|AC011893 Homo sapiens BAC clone RP11-34L23 from 2, complete sequence. ----isReversed: 1 ----hitSequence: CGCUGGUCCGAGGUAAUAACUUAUCUCAGUUGACUGUUCACAACCAGUUACAGAUCAAACAGCUUCUAAUACCCUUCUCCCCCUUCUCACUACUGCACUGACUAGUCUU hit 215 : 114298 114190 (rev) 30.94 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 :CUGGUCCGA G:A:U:: UUAUC CA UU+A UG+U+ACA +AGUU+CAG++ 63604 CGCUGGUCCGAG-GUAAUAACUUAUCUCAGUUGACUGUUCACAACCAGUUACAGAUCaaa 63662 ............____________________>>>>>>>------->>>>>>>>:: 58 ............UCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +CCUU UC +CCC +C::A:U:CUGCACU GACUAG: UU 63663 cagcuucuaauaCCCUU-CUC----CCCCUUCUCACUACUGCACU-GACUAGUCUU 63712 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3988,sp|AC012046.11|AC012046 Homo sapiens chromosome 10 clone RP11-312P12, complete sequence. ----isReversed: 1 ----hitSequence: GUCUGGUCCAAAUGCAGUGGUAUUUACAACUAAUUGAUCACAGCCAGUUACAGAUUUCUUUGUUCCUUCUCCACUUCCACUGCUUUACUUGACUAGCCUU hit 216 : 126126 126027 (rev) 67.08 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G CUGGUCC AA G:AGUGG U +U+ACAA+UAAUUGAU+ACAG +AGUU+CAG+++UC 72656 GUCUGGUCCAAAUGCAGUGG-UAUUUACAACUAAUUGAUCACAGCCAGUUACAGAUUUCU 72714 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ CCACU:CU ACUUGACUAG CUU 72715 UUGUUCCUUCUCCACUUCCACUGCUUUACUUGACUAGCCUU 72755 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4050,sp|AC012182.7|AC012182 Homo sapiens chromosome 16 clone RP11-332G1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUCCAGUGGUGUUUACAACUAAUCGAUCACAACCAGUAGCAGAUUUCUUUUUCCUUCUCUACUCUCACUGCUUCACCUGACCAGCUUU hit 217 : 158377 158279 (rev) 45.00 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GCU:GUCC A :AGUG U++U+ACAA+UAAU GAU+ACA +AGU CAG+++ C 30550 GGCUGGUCCAAGUCCAGUGG-UGUUUACAACUAAUCGAUCACAACCAGUAGCAGAUU-UC 30607 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+UUC UUCUC +C+C CACU: U CAC UGAC:AGC+UU 30608 UUUUUCCUUCUCUACUCUCACUGCUUCACCUGACCAGCUUU 30648 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4101,sp|AC012358.9|AC012358 Homo sapiens BAC clone RP11-321E13 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCUGAUGGUAGUGAGUUAUCUCAACUGAUUGUUCAGUCAGUUACAGAUGGAACUCCUUGUUCCACUCUUUCCUCCCUUUCCACUACUACACUUGACUAAUCUU hit 218 : 90425 90533 (fwd) 51.52 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:+UGG:C GA GG:AGUG GUUAUC CAA+U+AUUG+U+A GU+AGUU+CAG++ 90425 GGCUGGCCUGAUGGUAGUGAGUUAUCUCAACUGAUUGUUCA--GUCAGUUACAGAUGgaa 90482 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUC U CUCCC + CACU:CU CACUUG:CUA+:CUU 90483 cUCCUUGUUCCacucuuUCCUCCCUUUCCACUACUACACUUGACUAAUCUU 90533 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4105,sp|AC012363.6|AC012363 Homo sapiens BAC clone RP11-438O12 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGCCUGAAGGUAGUGAUUCAUCUCAAAUGAUUGUUCACAGUCAGUCACAGAUUGAAAUCCUUGUUCUACUUUUUCUUCCCUUCUCACUACUGUACUUGACUAGUCUU hit 219 : 36970 37080 (fwd) 56.76 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G::UGG:C GAAGG:AGUG:+U AUC CAA U+AUUG+U+ACAGU+AGU +CAG+++ 36970 GGUUGGCCUGAAGGUAGUGAUUCAUCUCAAAUGAUUGUUCACAGUCAGUCACAGAUUgaa 37029 .__________.....________.__>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCC.CCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUCU+CCC +C:CACU:CUG ACUUG:CUA::CUU 37030 aUCCUUGUUCUacuuuUUCUUCCCuUCUCACUACUGUACUUGACUAGUCUU 37080 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4113,sp|AC012377.5|AC012377 Homo sapiens chromosome 15 clone RP11-325N19 map 15q14, complete sequence. ----isReversed: 1 ----hitSequence: GUCUGAGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACUACUUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGGCUAACCUA hit 220 : 162021 161920 (rev) 47.89 bits <<<<<.<<<-----<<<<<<<___________________________.___________ 1 ggcug.GUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUA.GUUUCAguAaU 58 G +UG G C GA G:AGUGG U++U+ACAA+UAAUUGAU+ACA UA UU+CAG+++U 35762 GUCUGaGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACUAcUUUACAGAUUU 35820 ___________________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 C UUGUUC UUCUCC+C+CCCACU:CU CACUUG CUA+ CU 35821 CUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGGCUAACCUA 35863 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4133,sp|AC012442.7|AC012442 Homo sapiens BAC clone RP11-1I24 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUGCAAUGGUGUUGCAACAAAUUGAUCACAACCACUUACAGAUUUAUUUGUUCUUUUUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 221 : 133016 132918 (rev) 52.70 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:A:UGG U U+ CAA+ AAUUGAU+ACA +A UU+CAG+++U 40025 GGCUGGUCCAAGUGCAAUGG--UGUUGCAACAAAUUGAUCACAACCACUUACAGAUUUAU 40082 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUU UCC+C+CCCA:U:CU CACUUGACUAGCCUU 40083 UUGUUCUUUUUCCACUCCCACUGCUUCACUUGACUAGCCUU 40123 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4202,sp|AC012572.17|AC012572 Homo sapiens chromosome 18, clone RP11-123I22, complete sequence. ----isReversed: 1 ----hitSequence: GGCUUGUCCAAUGUAGUGGUUAUCAGAACUGAUUAACAUUGGUGUCACUAAAGUUGGUACACGACCCCACACUGCUAAAUGUGACUGGCUUA hit 222 : 64795 64704 (rev) 27.95 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC: GUCC AA GUAGUG UUAUCA AA UGAUUA UU+GU UCA+UAA 107843 GGCUUGUCC-AAUGUAGUGG-UUAUCA----GAACUGAUUAACAUUGGUGUCACUAA-AG 107895 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+ + CCCC CACUGCU +A UGAC :GC+U 107896 UUGGUACa---CGACCCCACACUGCUAAAUGUGACUGGCUUA 107934 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4232,sp|AC012624.6|AC012624 Homo sapiens chromosome 5 clone CTD-2082I17, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGGUUGUUCAGUCAGGUCUAGAUUGAACUCUUGUUCUACUCUUUCCCUCCUUCUCACUCCUGCACUUGACUAGUCUU hit 223 : 52308 52415 (fwd) 46.35 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAGG:AGUG:GUUAUC CAAUU+ UUG+U+A GU+AG U AG+++ 52308 AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGGUUGUUCA--GUCAGGUCUAGAUUgaa 52365 __________......__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + CUUGUUCU U C++CC +C:CACU:CUGCACUUGACUAG::UU 52366 CUCUUGUUCUacucuuUCCCUCCUUCUCACUCCUGCACUUGACUAGUCUU 52415 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4240,sp|AC012640.12|AC012640 Homo sapiens chromosome 5 clone CTD-2256P15, complete sequence. ----isReversed: 0 ----hitSequence: GGCAGGCCUGAUGGCGGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAUUUACAAAUCAAAUUCCUUGUUCUACUACUCCCACUUUCGCCGCCUCAUUUCCUGCUUU hit 224 : 87618 87723 (fwd) 30.38 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +GC :G C GA GG::G G:GUUAUC CA UU+AUUG+U+ACAGU+A UU+CA ++ 87618 GGCAGGCCUGAUGGCGGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAUUUACAAAUCaaa 87677 .__________...__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU + +CC+C+ :C C::C CA UU C: GC+UU 87678 uUCCUUGUUCUacuACUCCCACUUUCGCCGCCUCAUUU--CCUGCUUU 87723 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4240,sp|AC012640.12|AC012640 Homo sapiens chromosome 5 clone CTD-2256P15, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCCCAGACAGUUACAGAUCAAACUCCUUCUACUCUUUCCCCGCUUCUCACCACUGCACUUGACUAGUUUU hit 225 : 42489 42382 (rev) 56.61 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAGG: GUG:GUUAUC CAAUU+AUUG+U+ CAG +AGUU+CAG++ 102634 AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCCCAGACAGUUACAGAUCaaa 102693 .__________...__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU U CU U C+C C +C:CAC :CUGCACUUGACUAG::UU 102694 cUCCUUCUACUcuuUCCCCGCUUCUCACCACUGCACUUGACUAGUUUU 102741 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4267,sp|AC013267.11|AC013267 Homo sapiens BAC clone RP11-284O8 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGGCCAAGAGCAGUGGUGUUUACACCUAAUUGAUAACAACUAGUUUCAGACUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 226 : 58046 57947 (rev) 62.16 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG:CC A +G:AGUGG U++U+ACA +UAAUUGAU ACA UAGUUUCAG+ +UC 112333 GGCUGGGCCAAGAGCAGUGG-UGUUUACACCUAAUUGAUAACAACUAGUUUCAGACUUCU 112391 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUG:CUAGCCUU 112392 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 112432 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4300,sp|AC013406.7|AC013406 Homo sapiens BAC clone RP11-341F20 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUUGUCCCAAGGUGGGGAGUUACCUCAAUUGAUUUUUCACAGUCAGUUAUGGAUCAAAUUCCUUGUUCGACUUUCUCCCCUUCUCACUACUGCACUUGACUAGUCUU hit 227 : 174823 174715 (rev) 48.87 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU GUCC AAGG::G:G:GUUA+C CAAUU+AUU +U+ACAGU+AGUU+ G A+ 15196 GGCUUGUCCCAAGGUGGGGAGUUACCUCAAUUGAUUUUUCACAGUCAGUUA-UGGAUcaa 15254 ..__________...________.__>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCC.CCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUC UUCUCCCC +C:C:C::CUGCACUUGAC AG:CUU 15255 auUCCUUGUUCGacuUUCUCCCCuUCUCACUACUGCACUUGACUAGUCUU 15304 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4310,sp|AC013417.4|AC013417 Homo sapiens 12q22-103.4-106.5 BAC RP11-397H6 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCAGGUCCCAGUGCAGAGGUGUUUACAACUAAUUAAUCACAACCAGUUACAGAUUGCCUUGUUUCUUCUCCUCUCCCACUGCUUCACUUGACUAGCCUA hit 228 : 31491 31392 (rev) 54.39 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GGC GGUCC A G:AG GG U++U+ACAA+UAAUU AU+ACA +AGUU+CAG+++ +C 82559 GGCAGGUCCCAGUGCAGAGG-UGUUUACAACUAAUUAAUCACAACCAGUUACAGAUUgCC 82617 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC UUCUCC C+CCC CU:CU CACUUGACU GCCU 82618 UUGUUUC-UUCUCCUCUCCCACUGCUUCACUUGACUAGCCUA 82658 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4329,sp|AC013452.9|AC013452 Homo sapiens chromosome 15 clone RP11-325E5 map 15q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGAUGUGAGUGGAGUGGUAUUUACAGCUAAUUGAGCACAACCAGUUACAGAUUACUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGAAUAGCUUU hit 229 : 100467 100368 (rev) 50.68 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GCUG:U GA G AGUGG U +U+ACA +UAAUUGA +ACA +AGUU+CAG+++ C 104279 GGCUGAUGUGAGUGGAGUGG-UAUUUACAGCUAAUUGAGCACAACCAGUUACAGAUUACU 104337 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU CU CACUU A:UAGC+UU 104338 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGAAUAGCUUU 104378 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4340,sp|AC013467.8|AC013467 Homo sapiens BAC clone RP11-451F14 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUUGUCCAAGUGCAGUGGUGUUUACAACUAAUUUGAUCACAACCAGUUAUAUGUUCCUUUUGUUCCUUCUUCACUCCCACUUCUUUACUUGACUAGCCUA hit 230 : 133392 133291 (rev) 47.76 bits <<<<<<<<-----<<<<<<<______________._______________________._ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaA.uUGaUUAcAgUUAGUUUCAguAa.U 58 GGCU GUCC A G AGUGG U++U+ACAA+UAA UUGAU+ACA +AGUU+ A ++ + 39575 GGCUUGUCCAAGUGCAGUGG-UGUUUACAACUAAuUUGAUCACAACCAGUUAUAUGUUcC 39633 ___________________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+C+C+CCCACU CU ACUUGAC AGCCU 39634 UUUUGUUCCUUCUUCACUCCCACUUCUUUACUUGACUAGCCUA 39676 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4350,sp|AC013477.7|AC013477 Homo sapiens BAC clone RP11-559F19 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAGGUAACCGAUCACAACCAGUUACAGAUUUUGUUUCUCCUUCUCCACUCCCACUGCUUCACUUGACUAGUCAA hit 231 : 8219 8120 (rev) 53.10 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCC A G:AGUGG U++U+ACA UAA GAU+ACA +AGUU+CAG+++U 173874 GGCUGGUCCAAGUGCAGUGG-UGUUUACAGGUAACCGAUCACAACCAGUUACAGAUUUUG 173932 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+ UC UUCUCC+C+CCCACU:CU CACUUGACUAG:C 173933 UUUCUCCUUCUCCACUCCCACUGCUUCACUUGACUAGUCAA 173973 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4377,sp|AC013630.12|AC013630 Homo sapiens, clone RP11-12F2, complete sequence. ----isReversed: 1 ----hitSequence: CCCUGGUCCAAAGAUAGUUGUCUCAACUGAUCGUUCACCAUCAGUUACAGAUCAGACUCCUUGUUCUACUCUUUCCCACUCUCACUACUGCACUUGACUCUUAAA hit 232 : 50835 50731 (rev) 28.92 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 : GGUCC ::AG ::GUU UC CAA+U+AU G+U+AC U+AGUU+CAG++ 89582 CCCUGGUCC----AAAGAUAGUUGUCUCAACUGAUCGUUCACCAUCAGUUACAGAUCaga 89637 .__________....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UU +CC+C+C:: CU::UGCACUUGACU : 89638 cUCCUUGUUCUacucUUUCCCACUCUCACUACUGCACUUGACUCUUAAA 89686 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4394,sp|AC013726.7|AC013726 Homo sapiens BAC clone RP11-400N9 from 2, complete sequence. ----isReversed: 0 ----hitSequence: CGCUGGCCUGAAGGCAGUGAGCUAUCUCAAACGAUGGUUCACAAUCAGUUACAGACUGAACUCCUUGCUCUAUUCUCUACCCCAUUCUCACUACUUCACUGGACUACUCUA hit 233 : 40407 40517 (fwd) 34.95 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 : UGG:C GAAGG AGUG:G UAUC CAA +AU G+U+ACA U+AGUU+CAG+ + 40407 CGCUGGCCUGAAGGCAGUGAGCUAUCUCAAACGAUGGUUCACAAUCAGUUACAGACUgaa 40466 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU U C+CC+ +C:CACU CU CACU G:CUA : U 40467 cUCCUUGCUCUauucucUACCCCAUUCUCACUACUUCACUGGACUACUCUA 40517 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4413,sp|AC013828.10|AC013828 Homo sapiens chromosome , clone RP11-23B7, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCGAAGAUAGUGAAUUAUCACAACUGAUUGUUCACAGUUAUAGACUGAACUCUUUGCUCUACUUGUUCCCUUCUUCUCACUAUUGCACUUGACUAGUCAU hit 234 : 10436 10330 (rev) 56.56 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 ::CUGGUCCGAAG::AGUG: UUAUCACAA+U+AUUG+U+ACAGUUA +C G+A UC 133142 AGCUGGUCCGAAGAUAGUGAAUUAUCACAACUGAUUGUUCACAGUUAUAGACUGAACUCU 133201 _______......__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG UCU U C++ C +C:CACU::UGCACUUGACUAG:: U 133202 UUGCUCUacuuguUCCCUUCUUCUCACUAUUGCACUUGACUAGUCAU 133248 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4428,sp|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCGGAUCUAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUAUGCUUUCCCCUCUUCCCAUUACUGCACUAAGAAUAAAUAA hit 235 : 53134 53245 (fwd) 32.57 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + + G:UC AAGG:A UG GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG++ 53134 GGCGGAUCUAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUCaaa 53193 .__________......__________>>>>>>>-------.>>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUU.gACuagccUU 101 UCCUUGUUCU U C+C C +C CA U:CUGCACU GA:U + + 53194 cUCCUUGUUCUaugcuuUCCCCUCUUCCCAUUACUGCACUAaGAAUAAAUAA 53245 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4430,sp|AC015563.11|AC015563 Homo sapiens chromosome 18, clone RP11-344B2, complete sequence. ----isReversed: 1 ----hitSequence: CCCUGGUCCAAAGAUAGUUGUCUCAACUGAUCGUUCACCAUCAGUUACAGAUCAGACUCCUUGUUCUACUCUUUCCCACUCUCACUACUGCACUUGACUCUUAAA hit 236 : 130021 129917 (rev) 28.92 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 : GGUCC ::AG ::GUU UC CAA+U+AU G+U+AC U+AGUU+CAG++ 84964 CCCUGGUCC----AAAGAUAGUUGUCUCAACUGAUCGUUCACCAUCAGUUACAGAUCaga 85019 .__________....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UU +CC+C+C:: CU::UGCACUUGACU : 85020 cUCCUUGUUCUacucUUUCCCACUCUCACUACUGCACUUGACUCUUAAA 85068 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4439,sp|AC015641.9|AC015641 Homo sapiens chromosome 8, clone RP11-45O16, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAAUGGUAUCUACAACGAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACGCCCGCUGCUUCACUUGACUAGCCUA hit 237 : 142853 142952 (fwd) 53.57 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:A: GG U +++ACAA+ AAUUGAU+ACA +AGUU+CAG+++U 142853 GGCUGGUCCAAGUGCAAUGG-UAUCUACAACGAAUUGAUCACAACCAGUUACAGAUUUUU 142911 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C CCC :U:CU CACUUGACUAGCCU 142912 UUGUUCCUUCUCCACGCCCGCUGCUUCACUUGACUAGCCUA 142952 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4441,sp|AC015656.9|AC015656 Homo sapiens, clone RP11-81K2, complete sequence. ----isReversed: 0 ----hitSequence: GGCCAGUGCGAAUGUAGUGAGUUAUCUCAAUCUCACAGUAAGUUACAGAUUGAACUCCUUGUUCUACUCUUUCCCCACUUCUCACUACUGCACUUGAGUAGUCUU hit 238 : 93224 93328 (fwd) 42.97 bits <<<<<<<<-----<<<<<<<___________.__________________________.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAU.UaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:C:: U CGAA G:AGUG:GUUAUC CAAU U+ACAGU AGUU+CAG+++ 93224 GGCCAGUGCGAAUGUAGUGAGUUAUCUCAAUc-------UCACAGUAAGUUACAGAUUga 93276 ..__________......__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C:CACU:CUGCACUU A ::G:CUU 93277 acUCCUUGUUCUacucuuUCCCCACUUCUCACUACUGCACUUGAGUAGUCUU 93328 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4454,sp|AC015720.20|AC015720 Homo sapiens chromosome 15, clone RP11-151H2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAGUGCAGUGGUGUUUACAAGUAUUUGAUUAUAACUAGUUACAGAUUUCUUUGUUUCCUUCUCCACUCCCACUGCCUCACUUGACUGGCCUA hit 239 : 55307 55207 (rev) 65.00 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC:GGUCCGA G:AGUGG U++U+ACAA UA UUGAUUA+A UAGUU+CAG+++UC 119253 GGCUGGUCCGAGUGCAGUGG-UGUUUACAAGUAUUUGAUUAUAACUAGUUACAGAUUUCU 119311 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUCC+C+CCCACU:C CACUUGACU:GCCU 119312 UUGUUUCcUUCUCCACUCCCACUGCCUCACUUGACUGGCCUA 119353 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4581,sp|AC016266.14|AC016266 Homo sapiens chromosome 15, clone RP11-2C7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAGAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUGCUGUCACUAUACAAUCCCCCCACUGCUAAAUUUUACUAGCUUU hit 240 : 94654 94569 (rev) 29.49 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GCUGGU GA GGUAGUGGGUUAUCA AA U AUUA UU+ U UCA+UA+ C 54734 GGCUGGUCAGAUGGUAGUGGGUUAUCA----GAACUUAUUAACAUUGCUGUCACUAUACA 54789 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CCCCCCACUGCU +A UU ACUAGC+UU 54790 AU-----------CCCCCCACUGCUAAAUUUUACUAGCUUU 54819 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4590,sp|AC016394.13|AC016394 Homo sapiens chromosome 10 clone RP11-152N13, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUACAGUGGUGUUUACAGCUAAUUGAUCACAACCACUUUAUGGAUUUCUUUGUUUCCUCUCCACUCCUACUGCUUCACUUGAUUAGCCUA hit 241 : 74615 74515 (rev) 38.71 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG UCC A ::AGU G U++U+ACA +UAAUUGAU+ACA +A UUU G A+U C 75112 GGCUGGUCCAAGUACAGUGG-UGUUUACAGCUAAUUGAUCACAACCACUUUAUGGAUUUC 75170 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU++U U UCUCC+C+CC ACU::U CACUUGA UAGCCU 75171 UUUGUUUcCUCUCCACUCCUACUGCUUCACUUGAUUAGCCUA 75212 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4619,sp|AC016559.3|AC016559 Homo sapiens chromosome 5 clone CTC-422A18, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAACCUU hit 242 : 97500 97599 (fwd) 67.17 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G+UGGUC GA G:AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 97500 AGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 97558 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUGACUA+C:UU 97559 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAACCUU 97599 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4650,sp|AC016597.4|AC016597 Homo sapiens chromosome 16 clone CTD-2049O4, complete sequence. ----isReversed: 0 ----hitSequence: GGUGGGUCCAAAGGUAGCAAGUUAUCUCAAUUGAUCACAGUCAGUUACAGAUCUAACUCCUUUUUCCAUUCUAUCACCCCUUCUCAUUACUGUACUUGACUAGUCUU hit 243 : 36514 36620 (fwd) 40.56 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:: GGUCC AAGG:A :::GUUAUC CAA UUGAU+ACAGU+AGUU+CAG++ 36514 GGUGGGUCCAAAGGUAGCAAGUUAUCUCAA----UUGAUCACAGUCAGUUACAGAUCuaa 36569 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU+UUC U +CCC +C::: U:CUG ACUUGACU ::CUU 36570 cUCCUUUUUCCauucuaUCACCCCUUCUCAUUACUGUACUUGACUAGUCUU 36620 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4699,sp|AC016679.9|AC016679 Homo sapiens BAC clone RP11-58C7 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCUGAAGAUGAUGAGUUAUCUCAAUUGAUUGUUCAGCCAGUUACAGAUCCAACUCCUUGCUCUAUUCUUUCCUCUCUUCUCACUACUGCACUUGGCUAGGAAA hit 244 : 64205 64313 (fwd) 32.69 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +CUG: C GAAG::::UG:GUUAUC CAAUU+AUUG+U+A G +AGUU+CAG++ 64205 GGCUGAUCUGAAGAUGAUGAGUUAUCUCAAUUGAUUGUUCA--GCCAGUUACAGAUCcaa 64262 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU U CUC C +C:CA::::UGCACUUG :UAG+ 64263 cUCCUUGCUCUauucuuUCCUCUCUUCUCACUACUGCACUUGGCUAGGAAA 64313 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4706,sp|AC016692.9|AC016692 Homo sapiens BAC clone RP11-93E22 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAUGGUAGUGGGUUAUCAGAAUUUAUUAAAAUUAUUAGUGUCACUGAAGUUAGUAUACAACCCCCCACUGCUGAAUCUAACUAGUUUU hit 245 : 25397 25493 (fwd) 31.41 bits <<<<<<<<-----<<<<<<<_______________________...______________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcA...gUUAGUUUCAguAa 57 +:CUGGU GA GGUAGUGGGUUAUCA AAUU AUUA A UUAGU UCA+U A 25397 GGCUGGUCUGAUGGUAGUGGGUUAUCA----GAAUUUAUUAAAauuAUUAGUGUCACUGA 25452 __________.__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +U+U + CCCCCCACUGCUG+A U ACUAG:+UU 25453 -AGUUAGUAUa---CAACCCCCCACUGCUGAAUCUAACUAGUUUU 25493 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4750,sp|AC016753.9|AC016753 Homo sapiens BAC clone RP11-513O19 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGGUAGUGAGUUAUCCCAACUGAUUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUACCCUUUCCCCACUUCUCACUACUGCACUUGACUAGACUU hit 246 : 1466 1576 (fwd) 68.63 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G CUGGUCC AAGG:AGUG:GUUAUC+CAA+U+AUUG+U+ACAGU+AGUU+CAG++ 1466 GGCUGGUCCAAAGGUAGUGAGUUAUCCCAACUGAUUGUUCACAGUCAGUUACAGAUCaaa 1525 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C:CACU:CUGCACUUGACUAG CUU 1526 cUCCUUGUUCUacccuuUCCCCACUUCUCACUACUGCACUUGACUAGACUU 1576 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4750,sp|AC016753.9|AC016753 Homo sapiens BAC clone RP11-513O19 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GACUGGUCUGAAGGUAGUGAGUUAUCUGAAUUGAUUGUUCACAGUCACAGAUCAAACUCCUUGUUCUACUCUUUUCUCCCUUCUCAUUACUGCACUUGACUAGUCUU hit 247 : 27211 27105 (rev) 52.35 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 G:CUGGUC GAAGG:A UG:GUUAUC AAUU+AUUG+U+ACAGU+A + ++AA UC 148484 GACUGGUCUGAAGGUAGUGAGUUAUCUGAAUUGAUUGUUCACAGUCACAGA-UCAAAcUC 148542 ________......__________>>>>>>>------->>>>>>>>:: 60 cUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUCU UUCUCCC +C:CA U:CUGCACUUGACUAG:CUU 148543 CUUGUUCUacucuuUUCUCCCUUCUCAUUACUGCACUUGACUAGUCUU 148590 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4758,sp|AC016764.8|AC016764 Homo sapiens BAC clone RP11-549G13 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGGGCAGAGGUGUUUACAACUAACUGAUCACAGCCAGUUACAGAUUUCUUUGUCCUUUUCCACUCCCACUGCUUCAUUUGACUAGCCUA hit 248 : 127205 127107 (rev) 60.58 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A GG:AG GG U++U+ACAA+UAA UGAU+ACAG +AGUU+CAG+++UC 28664 GGCUGGUCCAAGGGCAGAGG-UGUUUACAACUAACUGAUCACAGCCAGUUACAGAUUUCU 28722 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGU C UU UCC+C+CCC CU:CU CA UUGACUAGCCU 28723 UUGUCC-UUUUCCACUCCCACUGCUUCAUUUGACUAGCCUA 28762 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4764,sp|AC016773.8|AC016773 Homo sapiens BAC clone RP11-572O17 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUGCCAAGGGAGUGAGUUUUCUCUGUUGCUUGUUCAGUCCAUUACAGAUCGAACUCCUUGUUCCACUCUUUCCCCUUUCUCACUACUGCACUUGACUAGUCUU hit 249 : 59704 59597 (rev) 40.56 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU C AAGG AGUG:GUU+UC C UU+ UUG+U+A GU+ UU+CAG++ 129520 GGCUGGUGCCAAGGGAGUGAGUUUUCUCUGUUGCUUGUUCA--GUCCAUUACAGAUCgaa 129577 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUC UUC+CC +C:CACU CUGCACUU ACUAG:CUU 129578 cUCCUUGUUCCacucuUUCCCCUUUCUCACUACUGCACUUGACUAGUCUU 129627 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4767,sp|AC016813.20|AC016813 Homo sapiens chromosome 8, clone RP11-495O10, complete sequence. ----isReversed: 1 ----hitSequence: GACUGGUCCGAAGGUAGUGAGUUAUGUCAAUUGAUUGUCCACAGUCAGUUACAGAUCAGACUCCUUAUUCUACUCUAUCCCCCUUCUCACUAAUGCACUCGACAGGUCUU hit 250 : 24994 24885 (rev) 53.45 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C: GUCCGAAG :AGUG:GUUAU CAAUU+AUUG+ +ACAGU+AGUU+CAG++ 158575 GACUGGUCCGAAGGUAGUGAGUUAUGUCAAUUGAUUGUCCACAGUCAGUUACAGAUCaga 158634 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU UUCU +UC+CCC +C:CACU: UGCACU GAC :G:CUU 158635 cUCCUUAUUCUacucuAUCCCCCUUCUCACUAAUGCACUCGACAGGUCUU 158684 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4784,sp|AC016876.10|AC016876 Homo sapiens chromosome 17, clone RP11-186B7, complete sequence. ----isReversed: 0 ----hitSequence: UGCUGGUCUGAGUGCAUUGGUGUUUACAACUAAUUGAUCACAACCGGUUACAGAUUUCUUUGUACCUUCUCCACUCCCACUGCUUCACUGACCAGCCUU hit 251 : 57178 57276 (fwd) 52.87 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GUC GA G:A:UGG U++U+ACAA+UAAUUGAU+ACA ++GUU+CAG+++UC 57178 UGCUGGUCUGAGUGCAUUGG-UGUUUACAACUAAUUGAUCACAACCGGUUACAGAUUUCU 57236 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGU C UUCUCC+C+CCCA:U:CU CACU GAC:AGC:UU 57237 UUGUACCUUCUCCACUCCCACUGCUUCACU-GACCAGCCUU 57276 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4800,sp|AC016910.6|AC016910 Homo sapiens BAC clone RP11-460B1 from 2, complete sequence. ----isReversed: 0 ----hitSequence: UUCUGGUUUGAGUGUAGUAGUAUUUACAACUAAUUAAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCUUUUCCUACUGUUACAUUUGACUGAUCUU hit 252 : 61894 61993 (fwd) 41.46 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : +:GGU: GA UAGU:G U +U+ACAA+UAAUU AU+ACA +AGUU+CAG+++UC 61894 UUCUGGUUUGAGUGUAGUAG-UAUUUACAACUAAUUAAUCACAACCAGUUACAGAUUUCU 61952 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC +CC:ACUG U CA UU:ACU:+ :UU 61953 UUGUUCCUUCUCUUUUCCUACUGUUACAUUUGACUGAUCUU 61993 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4849,sp|AC017007.9|AC017007 Homo sapiens BAC clone RP11-119H12 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGGUAGUCCAAGUGCAGUGGUAUUUAUGACAAAUUGAUUAUAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUUGCUUA hit 253 : 25113 25014 (rev) 46.97 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +G :GUCC A G:AGUGG U +U+A A+ AAUUGAUUA+A +AGUU+CAG+++UC 157693 GGGUAGUCCAAGUGCAGUGG-UAUUUAUGACAAAUUGAUUAUAACCAGUUACAGAUUUCU 157751 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUGAC: C+U 157752 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUUGCUUA 157792 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4987,sp|AC018628.13|AC018628 Homo sapiens chromosome 17, clone RP11-342K2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCUGAAGGUAGUGAGUUACCUCAGUUGACUGUUCAGUUAGUUGCAGAUCAAACUCCUUGUUCUACUCUUUCCCCUCUUUCCACUACUGCAUAUGUGACUAGUCUA hit 254 : 4386 4276 (rev) 31.72 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU:GUC GAAGG:AGUG GUUA+C CA UU+A UG+U+A GUUAGUU CAG++ 99645 GGCUAGUCUGAAGGUAGUGAGUUACCUCAGUUGACUGUUCA--GUUAGUUGCAGAUCaaa 99702 .__________......__________>>>>>>>-------..>>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUU..gACuagccUU 101 UCCUUGUUCU U C+C C + CACU:CUGCA U GAC:AG:CU 99703 cUCCUUGUUCUacucuuUCCCCUCUUUCCACUACUGCAUAUguGACUAGUCUA 99755 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4988,sp|AC018629.12|AC018629 Homo sapiens chromosome 17, clone RP11-58O9, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGUUCCAAAACAGUAAGUUAUCUCUAUUGAUUGUUCAGUUACAGAUCAAACUCCUUGUUCUACUCUUUUCCCUCCUUCUCACUACUGCACUUGACUAGUCAA hit 255 : 46396 46292 (rev) 30.70 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:UCC AA+: AGU::GUUAUC C AUU+AUUG+U +AGUU+CAG++ 119839 GGCUGUUCC-AAAACAGUAAGUUAUCUCUAUUGAUUGUU------CAGUUACAGAUCaaa 119891 .__________.......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++CC +C::ACU :UGCACUUGA:UAG:C 119892 cUCCUUGUUCUacucuuuUCCCUCCUUCUCACUACUGCACUUGACUAGUCAA 119943 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5046,sp|AC018719.4|AC018719 Homo sapiens BAC clone RP11-573N21 from Xq23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUGUGCGUGCAGCGGUGUUUACAACUAAUUGAUCACAAGCAGUUAUAGAUUUCUUUGUUCCUUUUCCACUCCCACUGCUUUACUUGGCUAGCCUA hit 256 : 106713 106812 (fwd) 48.44 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG G G:AG:GG U++U+ACAA+UAAUUGAU+ACA +AGUU+ AG+++UC 106713 GGCUGGUGUGCGUGCAGCGG-UGUUUACAACUAAUUGAUCACAAGCAGUUAUAGAUUUCU 106771 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UU UCC+C+CCC:CU:CU ACUU CUAGCCU 106772 UUGUUCCUUUUCCACUCCCACUGCUUUACUUGGCUAGCCUA 106812 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5047,sp|AC018720.5|AC018720 Homo sapiens chromosome 7 clone CTD-2562F8, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUACCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 257 : 66913 67012 (fwd) 41.81 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 66913 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 66971 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGU C UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 66972 UUGUACCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 67012 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5076,sp|AC018781.9|AC018781 Homo sapiens chromosome 8, clone RP11-302J23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGUUAGUGAGUUAUCUCAAUUGAUUUUUCACAGUUACAGAUCAAACUUCCUUGUUCUACUCUUUCUCCCUUCUCACUACUGCACUUAAAUGGUCUU hit 258 : 151338 151444 (fwd) 50.81 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C:G U GAAG::AGUG:GUUAUC CAAUU+AUU +U+AC AGUU+CAG++ 151338 GGCUGGUCUGAAGUUAGUGAGUUAUCUCAAUUGAUUUUUCAC----AGUUACAGAUCaaa 151393 ..__________.....__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUCUCCC +C:CACU::UGCACUU A U:G:CUU 151394 cuUCCUUGUUCUacucuUUCUCCCUUCUCACUACUGCACUUAAAUGGUCUU 151444 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5111,sp|AC018866.9|AC018866 Homo sapiens BAC clone RP11-57J18 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GAGUGGUUUGAGUUUAGUGGUAUGUACAACUAAUUGAUCAUAAACAGUGACAGAUUUACUUGUUCCUUCUUCACUUCCACUGCUUCAUUUGGCUAGCCAU hit 259 : 72638 72737 (fwd) 40.99 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G: UGG : GA :UAGUGG U + +ACAA+UAAUUGAU+A+A +AGU +CAG+++U C 72638 GAGUGGUUUGAGUUUAGUGG-UAUGUACAACUAAUUGAUCAUAAACAGUGACAGAUUUAC 72696 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+C+C+ CCACUG:U CA UU: CUA :C U 72697 UUGUUCCUUCUUCACUUCCACUGCUUCAUUUGGCUAGCCAU 72737 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5126,sp|AC018901.8|AC018901 Homo sapiens chromosome 15 clone RP11-292P13 map 15q15, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGCAUCAUCUUAAUUGAUUGUUCAUACUCAGUUACAGAUAAUACUCCUUGUUCUACUCUUUCCCCACUUCUCACUACUGCACUUGACUAGUCUU hit 260 : 167937 168047 (fwd) 57.67 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAGG:AGUG U AUC AAUU+AUUG+U+A+A U+AGUU+CAG++A 167937 GGCUGGUCUGAAGGUAGUGCAUCAUCUUAAUUGAUUGUUCAUACUCAGUUACAGAUAaua 167996 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C CACU:CUGCACUUGACUAG:CUU 167997 cUCCUUGUUCUacucuuUCCCCACUUCUCACUACUGCACUUGACUAGUCUU 168047 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5126,sp|AC018901.8|AC018901 Homo sapiens chromosome 15 clone RP11-292P13 map 15q15, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUUCAAGUACAGUGGUGUUUACAACUAAUUCAUCACAGUCACAGAUUUCUUUGUUCCUUCUCCACUUCCACUGCUUCACUUGAUUGGUCAA hit 261 : 20767 20672 (rev) 40.00 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:::G U:C A ::AGUGG U++U+ACAA+UAAUU AU+AC AGU +CAG+++UC 178737 GGUUGGUUCAAGUACAGUGG-UGUUUACAACUAAUUCAUCAC----AGUCACAGAUUUCU 178791 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ CCACU::U CACUU:A U:::C 178792 UUGUUCCUUCUCCACUUCCACUGCUUCACUUGAUUGGUCAA 178832 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5143,sp|AC018951.8|AC018951 Homo sapiens chromosome 11, clone RP11-307P14, complete sequence. ----isReversed: 1 ----hitSequence: GACUAGUCCUAGGGUAGUCAGUUAUCUCAAUUGAUCACAGUCAGUUACAUAUUGAAUUCCUUGUUAUACUCUUCCCCCCUUUCUCACUACUAAACUUGACUACUCUU hit 262 : 49831 49725 (rev) 44.54 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G: U:GUCC A GG:AGU :GUUAUC CAA UUGAU+ACAGU+AGUU+CA +++ 144717 GACUAGUCCUAGGGUAGUCAGUUAUCUCAA----UUGAUCACAGUCAGUUACAUAUUgaa 144772 .__________....________..__>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCC..CCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUU+U UUC+CCCC +C: ACU:CU +ACUUGAC:A :CUU 144773 uUCCUUGUUAUacucUUCCCCCCuuUCUCACUACUAAACUUGACUACUCUU 144823 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5184,sp|AC019077.9|AC019077 Homo sapiens BAC clone RP11-323J4 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCUGAUGGUAGUGGGUUAUCAGAAUUUAUUAACACUGUUGUCACUAAAGUUGGUAUAUAACCCCCCAUUGCUAAAUUGGACUGGAUUU hit 263 : 63045 63138 (fwd) 34.09 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 + C::GUC GA GGUA UGGGUUAUCA AAUU AUUA U+ U UCA+UAA 63045 GGCUAGUCUGAUGGUAGUGGGUUAUCA----GAAUUUAUUAACACUGUUGUCACUAA-AG 63099 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U U CCCCCCA UGCU +A U GAC::G +UU 63100 UUGGUAUa---UAACCCCCCAUUGCUAAAUUGGACUGGAUUU 63138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5268,sp|AC019322.8|AC019322 Homo sapiens chromosome 15, clone RP11-382B18, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGGGUGUACAAGGAAUUGAUUACAAGCAGUUACAGGUUUCUUUGCUCCUUUUCCAUUUCCACUGCUGCUUCACUUCACUAGCCUU hit 264 : 52850 52952 (fwd) 45.20 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU GA G:AGUGGG U U ACAA AAUUGAUUACA +AGUU+CAG ++UC 52850 GGCUGGUCUGAGUGCAGUGGGGUGU-ACAAGGAAUUGAUUACAAGCAGUUACAGGUUUCU 52908 _________________>>>>>>>---...---->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 UUG UC UU UCC+ + CCACU:CUGC ACUU ACUAGCCUU 52909 UUGCUCCUUUUCCAUUUCCACUGCUGCuucACUUCACUAGCCUU 52952 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5293,sp|AC020596.8|AC020596 Homo sapiens BAC clone RP11-365K23 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCUCCAAUGGUAGUGGGUUAUCAAAAUUUAUUAACAUUAGUUCACUAAAGUUGAUAUAUAACCCCCCAUUGCUAAAUCUGACUGGCUUU hit 265 : 106049 106141 (fwd) 32.47 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:G UCC A GGUA UGGGUUAUCA AAUU AUUA UUAGUU CA+UAA 106049 GGCUGCUCCAAUGGUAGUGGGUUAUCA----AAAUUUAUUAACAUUAGUU-CACUAA-AG 106102 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+U U CCCCCCA UGCU +A UGA U:GC+UU 106103 UUGAUAUa---UAACCCCCCAUUGCUAAAUCUGACUGGCUUU 106141 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5354,sp|AC020754.4|AC020754 Homo sapiens chromosome 3 clone RP11-37I4 map 3p, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCCGAGUGCAAUGGUGUUUACAACUAAUCGAUCACAACCAGUUACAGAUAUCUUUGUUCCUUCUCCAUUCCCAUUGCUCUGCUUGACUAGCCUU hit 266 : 86464 86563 (fwd) 60.78 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG:UCCGA G:A:UGG U++U+ACAA+UAAU GAU+ACA +AGUU+CAG++AUC 86464 GGCUGAUCCGAGUGCAAUGG-UGUUUACAACUAAUCGAUCACAACCAGUUACAGAUAUCU 86522 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +CCCA:U:CU+ CUUGA:UAGCCUU 86523 UUGUUCCUUCUCCAUUCCCAUUGCUCUGCUUGACUAGCCUU 86563 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5412,sp|AC020942.6|AC020942 Homo sapiens chromosome 5 clone CTD-2361L15, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCCAAAGGUAGUCAGUUAUUUCAAUUGGUUGUUCACGGUUAGUUACAGAUCAAACUCUUGUUAUACUCUUUCCCCCUUCUCACUACUGCACUUGACUAAUUAA hit 267 : 34599 34707 (fwd) 51.48 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:+U:GUCC AAGG:AGU :GUUAU+ CAAUU+ UUG+U+AC+GUUAGUU+CAG++ 34599 GGCUAGUCCAAAGGUAGUCAGUUAUUUCAAUUGGUUGUUCACGGUUAGUUACAGAUCaaa 34658 __________.....__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + CUUGUU+U UUC+CCC +C: ACU:CUGCACUUGAC:A+:+ 34659 CUCUUGUUAUacucuUUCCCCCUUCUCACUACUGCACUUGACUAAUUAA 34707 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5459,sp|AC021059.25|AC021059 Homo sapiens 3 BAC RP11-464E15 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAAGUUAGUGAGUUAUCUCAAUUGAUUGUUUACAGUCAGUUACAGAUCGAACUCCUUGUUCUACUCUUUCCCUCCUUCUCACUGCAGCAAUUAAAAAAAUCU hit 268 : 125768 125658 (rev) 49.60 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + +U U CGAAG:UAGUG:GUUAUC CAAUU+AUUG+UUACAGU+AGUU+CAG++ 38309 GGCUGGUCCGAAGUUAGUGAGUUAUCUCAAUUGAUUGUUUACAGUCAGUUACAGAUCgaa 38368 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++CC +C:CACUG: GCA UU A A+ + U 38369 cUCCUUGUUCUacucuuUCCCUCCUUCUCACUGCAGCAAUUAAAAAAAUCU 38419 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5493,sp|AC021148.8|AC021148 Homo sapiens BAC clone RP11-472B18 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCUGAGUGUGGUGGUGUUUACAACUUGCUGGUUACAACCAGUUACAGAUUUCUGUUCCUUCUCUACUCCCACUGCUUCAUUUGGCUAGCCCA hit 269 : 7482 7579 (fwd) 40.15 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG: C GA GU:GUGG U++U+ACAA+U UG UUACA +AGUU+CAG+++ C 7482 GGCUGAUCUGAGUGUGGUGG-UGUUUACAACUUGCUGGUUACAACCAGUUACAGAUU-UC 7539 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U+ UUC UUCUC +C+CCCAC:GCU CA UUG :UAGCC 7540 UG-UUCCUUCUCUACUCCCACUGCUUCAUUUGGCUAGCCCA 7579 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5495,sp|AC021151.8|AC021151 Homo sapiens BAC clone RP11-483A20 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAUGGUAGCGGGUUAUCAGAACCUAUUAACAGUAGUGUCACUAAAGUUAGUAUACAACCCCCAACUGCUAAAUAUGAGUGGCUUU hit 270 : 74409 74502 (fwd) 31.44 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:G UCCGA GGUAG: GGUUAUCA AA AUUA UAGU UCA+UAA 74409 GGCUGGUCCGAUGGUAGCGGGUUAUCA----GAACCUAUUAACAGUAGUGUCACUAA-AG 74463 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +U+U + CCCCC :CUGCU +A UGA U:GC+UU 74464 UUAGUAUa---CAACCCCCAACUGCUAAAUAUGAGUGGCUUU 74502 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5500,sp|AC021192.7|AC021192 Homo sapiens BAC clone RP11-767N15 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCAACAGCCAGGACGGGGUGUUUACAACUAAUUGAUUACAACCAGUCACAGAUUUCUUUGUUUCUUCUCCACUCCCACUGCUUCCCUUAACUAGCCUU hit 271 : 75079 74981 (rev) 35.49 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC : C A G A :GGGU++U+ACAA+UAAUUGAUUACA +AGU +CAG+++UC 127485 GGCAACAGCCA--GGACGGGGUGUUUACAACUAAUUGAUUACAACCAGUCACAGAUUUCU 127542 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUCC+C+CCC: U CU C+CUU : GCCUU 127543 UUGUUUCUUCUCCACUCCCACUGCUUCCCUUAACUAGCCUU 127583 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5524,sp|AC021317.19|AC021317 Homo sapiens chromosome 17, clone RP11-678G7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCCAGUGCAGUGGUGUUUAUAACUCAUCAAUCAUAGCCAGUUACAGAUUUCUUUAUUCCUCCUUCACUCCCACUGCUUCACUUGACUGCCCUU hit 272 : 69122 69221 (fwd) 52.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG :GGUCC A G:AGUGG U++U+A AA+U AU AU+A+AG +AGUU+CAG+++UC 69122 GGCUGGUCCCAGUGCAGUGG-UGUUUAUAACUCAUCAAUCAUAGCCAGUUACAGAUUUCU 69180 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC U CU+C+C+CCCACU:CU CACUUGACU: CCUU 69181 UUAUUCCUCCUUCACUCCCACUGCUUCACUUGACUGCCCUU 69221 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5534,sp|AC021413.16|AC021413 Homo sapiens chromosome 15, clone RP11-30N16, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAGUGGGGUGUACAAGGAAUUGAUUACAAGCAGUUACAGGUUUCUUUGCUCCUUUUCCAUUUCCACUGCUGCUUCACUUCACUAGCCUU hit 273 : 41842 41740 (rev) 45.20 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU GA G:AGUGGG U U ACAA AAUUGAUUACA +AGUU+CAG ++UC 157357 GGCUGGUCUGAGUGCAGUGGGGUGU-ACAAGGAAUUGAUUACAAGCAGUUACAGGUUUCU 157415 _________________>>>>>>>---...---->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 UUG UC UU UCC+ + CCACU:CUGC ACUU ACUAGCCUU 157416 UUGCUCCUUUUCCAUUUCCACUGCUGCuucACUUCACUAGCCUU 157459 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5540,sp|AC021443.27|AC021443 Homo sapiens chromosome 11, clone RP11-692M12, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUAAUCACAACCAGUUACAGACUUUGUUUCUUCUCCAGUCCUGCUGCUUCACUUGACUAGCCUU hit 274 : 79479 79383 (rev) 56.02 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCCGA G:AG G U++U+ACAA+UAAUU AU+ACA +AGUU+CAG+ + 140805 GGCUGGUCCGAGUGCAGUGG-UGUUUACAACUAAUUAAUCACAACCAGUUACAGACU-UU 140862 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UUC UUCUCC+ +CC CU:CU CACUUGACUAGCCUU 140863 GU-UUC-UUCUCCAGUCCUGCUGCUUCACUUGACUAGCCUU 140901 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5562,sp|AC021549.9|AC021549 Homo sapiens chromosome 18, clone RP11-650P15, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAAGGUAGUGAGUUAUCUCAACUGAUUGCUCACAGCCACUUGCAGGUCAAGCUCCUUGUUCUAUUCUUUCCCCCCUGUCUCACUACUGCACUUGACUAGUCUU hit 275 : 127351 127240 (rev) 55.29 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCC AAGG:AGUG:GUUAUC CAA+U+AUUG U+ACAG +A UU CAG + 55716 GGCUGGUCCAAAGGUAGUGAGUUAUCUCAACUGAUUGCUCACAGCCACUUGCAGGUCaag 55775 .__________.....________..__>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCC..CCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCCC +C:CACU:CUGCACUUGACUAG:CUU 55776 cUCCUUGUUCUauucuUUCCCCCCugUCUCACUACUGCACUUGACUAGUCUU 55827 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5564,sp|AC021558.10|AC021558 Homo sapiens chromosome 8, clone RP11-746L20, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCAGAGUGCAGUGGUGUUUACAACUAACUGAUCACAACCAUUUACAGAUUUAUUUGUUUCUUCUCCACUCUCACUGCUUUACUUGACUAGCCUU hit 276 : 43405 43306 (rev) 55.11 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG:C GA G:AGUG U++U+ACAA+UAA UGAU+ACA +A UU+CAG+++U 128178 GGCUGGCCAGAGUGCAGUGG-UGUUUACAACUAACUGAUCACAACCAUUUACAGAUUUAU 128236 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUCC+C+C CACU:CU ACUUG:CUAGCCUU 128237 UUGUUUCUUCUCCACUCUCACUGCUUUACUUGACUAGCCUU 128277 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5580,sp|AC021646.35|AC021646 Homo sapiens 12 BAC RP11-511B23 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUCAAGGUAGUGAGAUAUCUUAAUUGAUUUUUCAGUCAGCUGCAGAUCGAAUUAUUCGUCCUACUCUUCCCUUCUCAUUACCGUACUUGACUAGACUU hit 277 : 107847 107951 (fwd) 30.88 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G CUGGUC AAGG:A UG:G UAUC AAUU+AUU +U+A GU+AG U CAG++ 107847 GGCUGGUCUCAAGGUAGUGAGAUAUCUUAAUUGAUUUUUCA--GUCAGCUGCAGAUCgaa 107904 .__________..__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU..UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U U GU CU U UCCC +C:CA U:C G ACUUGACUAG CUU 107905 uUAUUCGUCCUacUCUUCCCUUCUCAUUACCGUACUUGACUAGACUU 107951 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5619,sp|AC021822.21|AC021822 Homo sapiens chromosome 15, clone RP11-122P18, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUGAGUGCAAUGGUAUUUACAACUAACUGAUCAUAACCAGUUACAGAUUCCUUUGUUCCUUCUCUCACUCCUACUCCUUCACUUGACCAGCCUU hit 278 : 63909 64007 (fwd) 44.33 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GU GA G A:U G U +U+ACAA+UAA UGAU+A+A +AGUU+CAG++++C 63909 GGCUGGU--GAGUGCAAUGG-UAUUUACAACUAACUGAUCAUAACCAGUUACAGAUUCCU 63965 ____________._____>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUc.cCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC C+C+CC A:U CU CACUUGAC:AGCCUU 63966 UUGUUCCUUCUCuCACUCCUACUCCUUCACUUGACCAGCCUU 64007 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5649,sp|AC021999.5|AC021999 Homo sapiens chromosome 3 clone RP11-129J10 map 3p, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCCGAGUGCAAUGGUGUUUACAACUAAUCGAUCACAACCAGUUACAGAUAUCUUUGUUCCUUCUCCAUUCCCAUUGCUCUGCUUGACUAGCCUU hit 279 : 77992 78091 (fwd) 60.78 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG:UCCGA G:A:UGG U++U+ACAA+UAAU GAU+ACA +AGUU+CAG++AUC 77992 GGCUGAUCCGAGUGCAAUGG-UGUUUACAACUAAUCGAUCACAACCAGUUACAGAUAUCU 78050 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +CCCA:U:CU+ CUUGA:UAGCCUU 78051 UUGUUCCUUCUCCAUUCCCAUUGCUCUGCUUGACUAGCCUU 78091 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5683,sp|AC022080.37|AC022080 Homo sapiens 12 BAC RP11-820K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCAGGUCCGAGUGCAGUGGUGUUGAUAACUAAUUCAUUACAAUCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUGGCCUU hit 280 : 56802 56703 (rev) 68.52 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC GGUCCGA G:AGUGG U++U A AA+UAAUU AUUACA U+AGUU+CAG+++UC 121416 GGCAGGUCCGAGUGCAGUGG-UGUUGAUAACUAAUUCAUUACAAUCAGUUACAGAUUUCU 121474 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUGACU GCCUU 121475 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUGGCCUU 121515 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5703,sp|AC022113.6|AC022113 Homo sapiens chromosome 5 clone CTC-461F20, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUACCUCAACCGAUUGUUCGCAGUCAGUUACAGAUCAAACCCCUUGUUCAGCUCUUUCCACCCUUCUCACUACUGCACUCACAACAACA hit 281 : 3113 3222 (fwd) 34.56 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 U GU GAAGG:AGUG:GUUA+C CAA+ +AUUG+U+ CAGU+AGUU+CAG++ 3113 GGCUGGUCUGAAGGUAGUGAGUUACCUCAACCGAUUGUUCGCAGUCAGUUACAGAUCaaa 3172 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +CCUUGUUC+ U C CCC +C:CACU:CUGCACU AC A 3173 cCCCUUGUUCAgcucuuUCCACCCUUCUCACUACUGCACU-CACAACAACA 3222 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5709,sp|AC022121.6|AC022121 Homo sapiens chromosome 5 clone CTD-2007H13, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGGUUGUUCAGUCAGGUCUAGAUUGAACUCUUGUUCUACUCUUUCCCUCCUUCUCACUCCUGCACUUGACUAGUCUU hit 282 : 155394 155287 (rev) 46.35 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAGG:AGUG:GUUAUC CAAUU+ UUG+U+A GU+AG U AG+++ 63865 AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGGUUGUUCA--GUCAGGUCUAGAUUgaa 63922 __________......__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + CUUGUUCU U C++CC +C:CACU:CUGCACUUGACUAG::UU 63923 CUCUUGUUCUacucuuUCCCUCCUUCUCACUCCUGCACUUGACUAGUCUU 63972 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5756,sp|AC022217.5|AC022217 Homo sapiens BAC clone RP11-779O18 from 5, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUCAAAGGUAGAGAGUUAUCUCAAUGAUUUGUUGACUGUCAGUUACUGAUCAAACUCCUUGUUCUACCCUUUCCCCUCUUCUCACUACUGUAGUUGACUAGUCUU hit 283 : 100070 99960 (rev) 49.27 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU:C AAGG:AG G:GUUAUC CAAU A UUG+U AC GU+AGUU+C G++ 93891 GGCUGGUUCAAAGGUAGAGAGUUAUCUCAAUGAUUUGUUGACUGUCAGUUACUGAUCaaa 93950 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C:C CU:CUG A UU:ACUAG:CUU 93951 cUCCUUGUUCUacccuuUCCCCUCUUCUCACUACUGUAGUUGACUAGUCUU 94001 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5821,sp|AC022415.5|AC022415 Homo sapiens chromosome 19 clone CTC-359D24, complete sequence. ----isReversed: 1 ----hitSequence: UGUGGGUCCAAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUGUCUUUGUUUCUCCUCCAUUCCCACUGCUUCAAUUGACUAGUCCA hit 284 : 81193 81094 (rev) 48.83 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 ::: GGUCC A G:AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG++ UC 99318 UGUGGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUGUCU 99376 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU U CUCC+ +CCCACU:CU CA UUGACU ::: 99377 UUGUUUCUCCUCCAUUCCCACUGCUUCAAUUGACUAGUCCA 99417 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5823,sp|AC022417.5|AC022417 Homo sapiens chromosome 5 clone CTD-2008E3, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAGAGUGUAAUGGAUUUUACAAGUAAUUGAUCACAGCCAGUUACAGAUUUCUUCGUUUCUUCUCCACUCCCACUGCUUCUUCACUUGACUAGCCUU hit 285 : 121074 120972 (rev) 52.15 bits <<<<<<<<-----<<<<<<<_____________________________________.._ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa..U 58 GGCUGGUC GA GUA:UGG U+U+ACAA UAAUUGAU+ACAG +AGUU+CAG+++ U 2955 GGCUGGUCAGAGUGUAAUGG-AUUUUACAAGUAAUUGAUCACAGCCAGUUACAGAUUucU 3013 ___________________>>>>>>>---...---->>>>>>>>:: 59 CcUUgUUCUUUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 C U UUC UUCUCC+C+CCCA:UGCU C ACUUGACUAGCCUU 3014 UCGU-UUC-UUCUCCACUCCCACUGCUUCuucACUUGACUAGCCUU 3057 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5829,sp|AC022425.6|AC022425 Homo sapiens chromosome 1 clone CTD-2302K4, complete sequence. ----isReversed: 1 ----hitSequence: GUCAUGGCUAUAAACAGUGGUGUUUACAAUGAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUACCACUGCUUUACUUGACUAGCCUU hit 286 : 56742 56643 (rev) 43.08 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G C G:C A+::AGUGG U++U+ACAAU AAUUGAU+ACA +AGUU+CAG+++UC 36131 GUCAUGGCUAUAAACAGUGG-UGUUUACAAUGAAUUGAUCACAACCAGUUACAGAUUUCU 36189 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ CCACU::U ACUUG:C G CUU 36190 UUGUUCCUUCUCCACUACCACUGCUUUACUUGACUAGCCUU 36230 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5857,sp|AC022483.7|AC022483 Homo sapiens BAC clone RP11-533F5 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUUUUGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCACAGAUUUCUCUGUUCCUUUUCUAUUCCACUGCUUCGCUUGACCAGUCUU hit 287 : 135811 135717 (rev) 29.20 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CU:GU: G:AGUG GU++U+ACAA+UAAUUGAU+ACA +A CAG+++UC 69830 GGCUGGUUUUUGUGCAGUG-GUGUUUACAACUAAUUGAUCACAACCA----CAGAUUUCU 69884 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UGUUC UU UC + +C CACU:CU C CUU:AC:AG:CUU 69885 CUGUUCCUUUUCUAUUC-CACUGCUUCGCUUGACCAGUCUU 69924 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5993,sp|AC023105.7|AC023105 Homo sapiens chromosome 7 clone GS1-13M19, complete sequence. ----isReversed: 1 ----hitSequence: GGCCGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUUUCUUCGUUCCUUCUCCACUCCCACUGCUUCACUUGAUUAGCCAG hit 288 : 3830 3731 (rev) 53.68 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC:G UC GA G:AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+ AG+++UC 67047 GGCCGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUUUCU 67105 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U GUUC UUCUCC+C+CCCACU:CU CACUUGA U:GCC 67106 UCGUUCCUUCUCCACUCCCACUGCUUCACUUGAUUAGCCAG 67146 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6007,sp|AC023137.5|AC023137 Homo sapiens BAC clone RP11-513P11 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCUGAAGGUAGUGAGUUAUCGCAUUGAUUGUUCACAGUCAGUUACAGACUGAACCCCUUGUUCUACACUUUUCCCCCUUCUCGCUACUGCACUUGACUAGUCUU hit 289 : 71295 71404 (fwd) 60.38 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUC GAAGG:AG G:GUUAUC CA U+AUUG+U+ACAGU+AGUU+CAG+ + 71295 AGCUGGUCUGAAGGUAGUGAGUUAUCGCAU-UGAUUGUUCACAGUCAGUUACAGACUgaa 71353 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +CCUUGUUCU UUC+CCC +C:C CU:CUGCACUUGACUAG::UU 71354 cCCCUUGUUCUacacuuUUCCCCCUUCUCGCUACUGCACUUGACUAGUCUU 71404 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6056,sp|AC023355.5|AC023355 Homo sapiens chromosome 15 clone RP11-154J22 map 15q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCCGAAGGUAGGGAGUUAUCUCAACCGAUUGUUCACAGUCAGGAGUUUGAUCUGAAACUCCUUGUUCUACUUUCUCCCCUUCUCACUACUAUGCUUGACUAGUCUU hit 290 : 108830 108719 (rev) 46.70 bits <<<<<<<<-----<<<<<<<____________________________...___...___ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAG...UUU...CAg 54 G:CUGG:CCGAAGG:AG:G:GUUAUC CAA+ +AUUG+U+ACAGU+AG UUU C G 45909 GGCUGGCCCGAAGGUAGGGAGUUAUCUCAACCGAUUGUUCACAGUCAGgagUUUgauCUG 45968 ___.__________...________.__>>>>>>>------->>>>>>>>:: 55 uAa.UCcUUgUUCU...UUCUccCC.CCccAcugcUgcaCUUgACuagccUU 101 +AA UCCUUGUUCU UUCUCCCC +C:C:CU:CU CUUG:CUAG:CUU 45969 AAAcUCCUUGUUCUacuUUCUCCCCuUCUCACUACUAUGCUUGACUAGUCUU 46020 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6057,sp|AC023356.8|AC023356 Homo sapiens chromosome 15 clone RP11-329C22 map 15q15, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUCAAAGGUAGUAACUUAUCUUAAUUGAUUGUUCACAGUCAGUUACAGAUAAAACUCUUUGUUCUACUCUUUCCCACCUUCUCACUACUACACUUGACUAGUCUA hit 291 : 65849 65739 (rev) 56.36 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU:C AAGG:AGU:: UUAUC AAUU+AUUG+U+ACAGU+AGUU+CAG++A 116043 GGCUGGUUCAAAGGUAGUAACUUAUCUUAAUUGAUUGUUCACAGUCAGUUACAGAUAaaa 116102 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU U C+ CC +C::ACU:CU CACUU:ACUAG:CU 116103 cUCUUUGUUCUacucuuUCCCACCUUCUCACUACUACACUUGACUAGUCUA 116153 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6132,sp|AC023794.37|AC023794 Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGGUGGUCCAAAGGUAGUGCCCUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUCCAAAUCCUUGUUCUGCUCCUUCCCCCUUCUCACUACUGCAUUUGACCAGUCUU hit 292 : 66962 66853 (rev) 58.19 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G: U:GUCC AAGG:AGUG UAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG++ 131527 GGGUGGUCCAAAGGUAGUGCCCUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUCcaa 131586 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCC +C CACU:CUGCA UUGAC:A :CUU 131587 aUCCUUGUUCUgcuccUUCCCCCUUCUCACUACUGCAUUUGACCAGUCUU 131636 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6160,sp|AC023891.28|AC023891 Homo sapiens 3 BAC RP13-81O8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAGGUGCAGUGGUGUUUACAGCUAAUUGAUCACAGCCAGUUACAGAUUUCUUUGUUCCUUCCACUCCCACUGCUUCACUUGACUAGCCUA hit 293 : 143308 143405 (fwd) 57.42 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC G:AGUGG U++U+ACA +UAAUUGAU+ACAG +AGUU+CAG+++UC 143308 GGCUGGUCCAGGUGCAGUGG-UGUUUACAGCUAAUUGAUCACAGCCAGUUACAGAUUUCU 143366 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UCC+C+CCCACU:CU CACUUGACUAGCCU 143367 UUGUUCCu---UCCACUCCCACUGCUUCACUUGACUAGCCUA 143405 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6171,sp|AC023933.9|AC023933 Homo sapiens chromosome 8, clone RP11-553F15, complete sequence. ----isReversed: 0 ----hitSequence: GUCUGAUCCAAGUGAAGUGAUGUUUACAACUAAUUGAUCAUGACCAGUUACAGAUUUCUUCAUUUCUUCUCCAAUUCCACUGCUUCACUUGACUAGCCUU hit 294 : 54371 54470 (fwd) 46.95 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G CUG:UCC A G:AGUG U++U+ACAA+UAAUUGAU+A++ +AGUU+CAG+++ C 54371 GUCUGAUCCAAGUGAAGUGA-UGUUUACAACUAAUUGAUCAUGACCAGUUACAGAUU-UC 54428 __.._______________>>>>>>>------->>>>>>>>:: 61 UU..gUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +UUC UUCUCC+ + CACU:CU CACUUGA:UAG CUU 54429 UUcaUUUC-UUCUCCAAUUCCACUGCUUCACUUGACUAGCCUU 54470 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6187,sp|AC024032.5|AC024032 Homo sapiens BAC clone RP11-196J14 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGCUGGUGAGUUAUUAAUAUCUCAACUGAUUGUUCAGAGGCAGUUAUAGAUCGAACUUCUUGUUCUCCUCUCUCCCUCCUUCUCACUACUACACUUGACUAGUCUU hit 295 : 81516 81632 (fwd) 41.50 bits <<<<<<<<-----<<<<<<<_______......___________________________ 1 ggcugGUcCGAAgguagUggGUUAUCa......CAAUUaAuUGaUUAcAgUUAGUUUCAg 54 G:CUGGUCC AAG ::GUG:GUUAU+A CAA+U+AUUG+U+A AG +AGUU+ AG 81516 GGCUGGUCCAAAGCUGGUGAGUUAUUAauaucuCAACUGAUUGUUCAGAGGCAGUUAUAG 81575 ___....__________......__________>>>>>>>------->>>>>>>>:: 55 uAa....UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 ++ U CUUGUUCU U C++CC +C:CAC:: U CACUUGACUAG:CUU 81576 AUCgaacUUCUUGUUCUccucucUCCCUCCUUCUCACUACUACACUUGACUAGUCUU 81632 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6202,sp|AC024084.4|AC024084 Human Chromosome 7 clone RP11-212C18, complete sequence. ----isReversed: 1 ----hitSequence: GGUUAGCCUGAGUGCUAUAGUAUUUACAAUGAAUUGAUCACAACCAGUUACAGAUUUCUUUGCCACAUCUUCACUCCCACUGCUUCACUUGACUAGCCUU hit 296 : 100126 100027 (rev) 48.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:U:G:C GA G:+:U:G U +U+ACAAU AAUUGAU+ACA +AGUU+CAG+++ C 83584 GGUUAGCCUGAGUGCUAUAG-UAUUUACAAUGAAUUGAUCACAACCAGUUACAGAUU-UC 83641 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU++ C+ +UCU+C+C+CC:A:+:CU CACUUG:C:A:CCUU 83642 UUUGCCAcAUCUUCACUCCCACUGCUUCACUUGACUAGCCUU 83683 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6255,sp|AC024267.18|AC024267 Homo sapiens chromosome 17, clone RP11-20B24, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAGUGCAGUAGUGUUUACAAGUAAUUGAUAUAAGAAGUUACAAAUUUCUUUGUUGCUUCUUCAUUCCCACUGCUUCACUUGGCUAGCCUU hit 297 : 27870 27968 (fwd) 50.14 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG CCGA G:AGU:G U++U+ACAA UAAUUGAU A+A AGUU+CA +++UC 27870 GGCUGGUCCGAGUGCAGUAG-UGUUUACAAGUAAUUGAU-AUAAGAAGUUACAAAUUUCU 27927 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCU+C+ +CC:ACU:CU CACUUG CUAGCCUU 27928 UUGUUGCUUCUUCAUUCCCACUGCUUCACUUGGCUAGCCUU 27968 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6288,sp|AC024575.6|AC024575 Homo sapiens chromosome 19 clone CTD-2342J14, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCCAAGGUAGUGACUUAUCUCAAUUGAUUGUUCACAGUUACAGAUCGAACUCCUUGUUCUACUCUUUCCCCCCUUCUCACUACUGCACUUGACUUGUCUU hit 298 : 84053 84159 (fwd) 55.18 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C GGUCC AAGG:AGUG: UUAUC CAAUU+AUUG+U+AC AGUU+CAG++ 84053 GGCUGGUCCCAAGGUAGUGACUUAUCUCAAUUGAUUGUUCAC----AGUUACAGAUCgaa 84108 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CACU:CUGCACUUGACU G:CUU 84109 cUCCUUGUUCUacucuuUCCCCCCUUCUCACUACUGCACUUGACUUGUCUU 84159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6299,sp|AC024588.4|AC024588 Homo sapiens chromosome 5 clone RP11-260E18, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUACCUCAACCGAUUGUUCGCAGUCAGUUACAGAUCAAACCCCUUGUUCAGCUCUUUCCACCCUUCUCACUACUGCACUCACAACAACA hit 299 : 52848 52739 (rev) 34.56 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 U GU GAAGG:AGUG:GUUA+C CAA+ +AUUG+U+ CAGU+AGUU+CAG++ 99129 GGCUGGUCUGAAGGUAGUGAGUUACCUCAACCGAUUGUUCGCAGUCAGUUACAGAUCaaa 99188 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +CCUUGUUC+ U C CCC +C:CACU:CUGCACU AC A 99189 cCCCUUGUUCAgcucuuUCCACCCUUCUCACUACUGCACU-CACAACAACA 99238 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6337,sp|AC024903.17|AC024903 Homo sapiens 16 BAC RP11-71L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUCGAAGGUAGUGUGUUAUUUCAGUUGAUUGCUCACUGUCAGUUACAGGUUGAACUCCUUGUUCUACUCUGUCCCCCUUCUUGCCACUGCACUUGACUAGUUUA hit 300 : 154818 154709 (rev) 44.73 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGGU:CGAAGG: G GUUAU+ CA UU+AUUG U+AC GU+AGUU+CAG ++ 12421 GGCUGGUUCGAAGGUAGUGUGUUAUUUCAGUUGAUUGCUCACUGUCAGUUACAGGUUgaa 12480 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UC+CCC +C C :CUGCACUU:ACUAG:+U 12481 cUCCUUGUUCUacucuGUCCCCCUUCUUGCCACUGCACUUGACUAGUUUA 12530 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6392,sp|AC025164.37|AC025164 Homo sapiens 12 BAC RP11-796E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAUGGUGUCUACAACUAAUUGAUCAAAACUAGUUACAGAUUUCUUUGUUCCUCCUCCACUUCCACUGCUUCACUUGGCUAGCCUA hit 301 : 156028 155930 (rev) 51.88 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG C GA G:A UGG U++++ACAA+UAAUUGAU+A A UAGUU+CAG+++UC 60814 GGCUGGUCUGAGUGCA-UGG-UGUCUACAACUAAUUGAUCAAAACUAGUUACAGAUUUCU 60871 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U CUCC+C+ CCACU:CU CACUUG CUAGCCU 60872 UUGUUCCUCCUCCACUUCCACUGCUUCACUUGGCUAGCCUA 60912 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6396,sp|AC025168.7|AC025168 Homo sapiens chromosome 15 clone RP11-43D14 map 15q14, complete sequence. ----isReversed: 1 ----hitSequence: GUCUGAGUCUGAGUGCAGUGGUGUUGACAACUAAUUGAUCACAACUACUUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGGCUAACCUA hit 302 : 55850 55749 (rev) 44.91 bits <<<<<.<<<-----<<<<<<<___________________________.___________ 1 ggcug.GUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUA.GUUUCAguAaU 58 G +UG G C GA G:AGUGG U++U ACAA+UAAUUGAU+ACA UA UU+CAG+++U 117487 GUCUGaGUCUGAGUGCAGUGG-UGUUGACAACUAAUUGAUCACAACUAcUUUACAGAUUU 117545 ___________________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 C UUGUUC UUCUCC+C+CCCACU:CU CACUUG CUA+ CU 117546 CUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGGCUAACCUA 117588 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6397,sp|AC025169.5|AC025169 Homo sapiens chromosome 5 clone CTC-352M6, complete sequence. ----isReversed: 1 ----hitSequence: GGUCAGUAGGGAAAUAGUGAGUUAUCUCAACUGAUAGUUCACAGUAUCAGUUACAGAUAGAACUCCUUGUUCUACUUUUCCUCCCUUCUCACUGCUGCACUUUACUAGUCUU hit 303 : 137615 137504 (rev) 46.14 bits <<<<<<<<-----<<<<<<<_________________________..____________. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgU..UAGUUUCAguAa. 57 G::::GU: G A+:UAGUG:GUUAUC CAA+U+AU G+U+ACAGU +AGUU+CAG++A 24306 GGUCAGUAGGGAAAUAGUGAGUUAUCUCAACUGAUAGUUCACAGUauCAGUUACAGAUAg 24365 ...__________.....__________>>>>>>>------->>>>>>>>:: 58 ...UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CUCCC +C:CACUG:UGCACUU:AC::::CUU 24366 aacUCCUUGUUCUacuuuUCCUCCCUUCUCACUGCUGCACUUUACUAGUCUU 24417 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6427,sp|AC025252.29|AC025252 Homo sapiens 12 BAC RP11-351O2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCUAAGGUAGCGAGUUAUCUCAAUCGACUGUUCACAGUCAGUUACAGAUCAACCUCCUUGUUCUACUCUUUCCCUUCUUCCACUACUCCACUUGACUAGUCUA hit 304 : 38255 38146 (rev) 55.10 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCC AAGG:AG:G GUUAUC CAAU +A UG+U+ACAGU+AGUU+CAG++ 8202 GGCUGGUCCUAAGGUAGCGAGUUAUCUCAAUCGACUGUUCACAGUCAGUUACAGAUCaac 8261 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+C C+ C:CU:CU+CACUUGACUAG:CU 8262 cUCCUUGUUCUacucuUUCCCUUCUUCCACUACUCCACUUGACUAGUCUA 8311 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6433,sp|AC025260.29|AC025260 Homo sapiens 12 BAC RP11-356O22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUUCAAGUGCAGCGGUGUUUACAACUCAUUGAUCAUAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCGCUGCUUCACUUGACUGGCCUA hit 305 : 100945 101044 (fwd) 58.38 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC:GGU:C A G:AG:GG U++U+ACAA+U AUUGAU+A+A +AGUU+CAG+++UC 100945 GGCUGGUUCAAGUGCAGCGG-UGUUUACAACUCAUUGAUCAUAACCAGUUACAGAUUUCU 101003 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCC:CU:CU CACUU:ACU:GCCU 101004 UUGUUCCUUCUCCACUCCCGCUGCUUCACUUGACUGGCCUA 101044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6440,sp|AC025270.6|AC025270 Homo sapiens chromosome 15 clone CTD-2165P21 map 15q15, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUUCAAGUACAGUGGUGUUUACAACUAAUUCAUCACAGUCACAGAUUUCUUUGUUCCUUCUCCACUUCCACUGCUUCACUUGAUUGGUCAA hit 306 : 108002 107907 (rev) 40.00 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:::G U:C A ::AGUGG U++U+ACAA+UAAUU AU+AC AGU +CAG+++UC 20483 GGUUGGUUCAAGUACAGUGG-UGUUUACAACUAAUUCAUCAC----AGUCACAGAUUUCU 20537 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ CCACU::U CACUU:A U:::C 20538 UUGUUCCUUCUCCACUUCCACUGCUUCACUUGAUUGGUCAA 20578 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6537,sp|AC025593.5|AC025593 Homo sapiens chromosome 7 clone RP11-18L16, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAUGAUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUAACUAAAGUUGGUAGAUAAUCCCCCCUGCUAAAUUUGACUGGCUAA hit 307 : 61512 61420 (rev) 29.21 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUCC A G:UAG GGGUUAUCA AA U AUUA UUAGU U A+UAA 122914 GGCUGGUCCAAUGAUAGUGGGUUAUCA----GAACUUAUUAACAUUAGUGUAACUAA-AG 122968 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+ + + CCCC CUG:U +A UUGACU:GC+ 122969 UUGGUAG---AUAAUCCCCCCUGCUAAAUUUGACUGGCUAA 123006 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6544,sp|AC025647.9|AC025647 Homo sapiens, clone RP11-316J7, complete sequence. ----isReversed: 0 ----hitSequence: ACUUGGUCCAAAGGUAGUGAGUUCUCUCACUUGAUUGUUCAGUUAUAGAUCCACCUCCUCGUUGUACUCUUUCUCCCCUUCUCACUACUGCACUUGAUUAGUCAA hit 308 : 52555 52659 (fwd) 31.76 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 :::UG UCC AAGG:AGUG:GUU UC CA UU+AUUG+U+A UAG U CA+ + UC 52555 ACUUGGUCCAAAGGUAGUGAGUUCUCUCACUUGAUUGUUCAGUUAUAGAUCCACCUCcUC 52614 ________..________.__>>>>>>>------->>>>>>>>:: 60 cUUgUUCU..UUCUccCC.CCccAcugcUgcaCUUgACuagccUU 101 UUGU CU UUCUCCCC +C:CACU:CUGCACUUGA UA::: 52615 GUUGUACUcuUUCUCCCCuUCUCACUACUGCACUUGAUUAGUCAA 52659 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6544,sp|AC025647.9|AC025647 Homo sapiens, clone RP11-316J7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUACAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCCUUGUUCCUUCUCCACUCCCACUGUUUCACUUGACUAGCCUU hit 309 : 78824 78923 (fwd) 71.83 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA ::AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UCC 78824 GGCUGGUCUGAGUACAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCC 78882 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU::U CACUUGACUAGCCUU 78883 UUGUUCCUUCUCCACUCCCACUGUUUCACUUGACUAGCCUU 78923 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6547,sp|AC025678.7|AC025678 Homo sapiens chromosome 15, clone RP11-602M11, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUGAGUGCAAUGGUAUUUACAACUAACUGAUCAUAACCAGUUACAGAUUCCUUUGUUCCUUCUCUCACUCCUACUCCUUCACUUGACCAGCCUU hit 310 : 46330 46428 (fwd) 44.33 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GU GA G A:U G U +U+ACAA+UAA UGAU+A+A +AGUU+CAG++++C 46330 GGCUGGU--GAGUGCAAUGG-UAUUUACAACUAACUGAUCAUAACCAGUUACAGAUUCCU 46386 ____________._____>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUc.cCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC C+C+CC A:U CU CACUUGAC:AGCCUU 46387 UUGUUCCUUCUCuCACUCCUACUCCUUCACUUGACCAGCCUU 46428 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6549,sp|AC025682.6|AC025682 Homo sapiens chromosome 17, clone RP11-580I16, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCCAGUGCAGUGGUGUUUAUAACUCAUCAAUCAUAGCCAGUUACAGAUUUCUUUAUUCCUUCUUCACUCCCACUGCUUCACUUGACUACCCUU hit 311 : 99360 99261 (rev) 55.34 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG UGGUCC A G:AGUGG U++U+A AA+U AU AU+A+AG +AGUU+CAG+++UC 58776 GGCUGGUCCCAGUGCAGUGG-UGUUUAUAACUCAUCAAUCAUAGCCAGUUACAGAUUUCU 58834 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC UUCU+C+C+CCCACU:CU CACUUGACUA CCUU 58835 UUAUUCCUUCUUCACUCCCACUGCUUCACUUGACUACCCUU 58875 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6624,sp|AC026110.42|AC026110 Homo sapiens 12 BAC RP11-434E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAUGCAAUGGUGUUUACAACUAAUUGAUAACAACCAGUUAACAGAUUUCUUUGUUCCUUCUCCACUUCCACUGCUUCACUUGACUAGCCUU hit 312 : 111947 112047 (fwd) 59.96 bits <<<<<<<<-----<<<<<<<_______________________________.________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUU.CAguAaUC 59 GGCUGGUCC AA G:A:UGG U++U+ACAA+UAAUUGAU ACA +AGUU+ CAG+++UC 111947 GGCUGGUCCAAAUGCAAUGG-UGUUUACAACUAAUUGAUAACAACCAGUUAaCAGAUUUC 112005 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ CCA:U:CU CACUUGACUAGCCUU 112006 UUUGUUCCUUCUCCACUUCCACUGCUUCACUUGACUAGCCUU 112047 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6711,sp|AC026347.17|AC026347 Homo sapiens 3 BAC RP11-362A9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGCUAGACCAGAGGUAGUGAGUUAUCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUCGUUCUACUCAUUGCUGUCUUCUCACUGCUGCACUUGACUAGUCUU hit 313 : 147485 147595 (fwd) 48.11 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CU:G CC AGGUAGUG:GUUAUC CAAU +AUUG+U+ACAGU+AGUU+CAG+++ 147485 AGCUAGACCAGAGGUAGUGAGUUAUCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUgaa 147544 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU GUUCU U CU C +C:CACUGCUGCACUUG C:AG::UU 147545 cUCCUCGUUCUacucauUGCUGUCUUCUCACUGCUGCACUUGACUAGUCUU 147595 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6754,sp|AC026416.4|AC026416 Homo sapiens chromosome 5 clone CTD-2048J22, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCCAAAGGUAGUCAGUUAUUUCAAUUGGUUGUUCACGGUUAGUUACAGAUCAAACUCUUGUUAUACUCUUUCCCCCUUCUCACUACUGCACUUGACUAAUUAA hit 314 : 34598 34706 (fwd) 51.48 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:+U:GUCC AAGG:AGU :GUUAU+ CAAUU+ UUG+U+AC+GUUAGUU+CAG++ 34598 GGCUAGUCCAAAGGUAGUCAGUUAUUUCAAUUGGUUGUUCACGGUUAGUUACAGAUCaaa 34657 __________.....__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + CUUGUU+U UUC+CCC +C: ACU:CUGCACUUGAC:A+:+ 34658 CUCUUGUUAUacucuUUCCCCCUUCUCACUACUGCACUUGACUAAUUAA 34706 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6758,sp|AC026422.5|AC026422 Homo sapiens chromosome 5 clone CTD-2169H9, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUAAGUACGGUGGUACUUACAACGAAUUGCUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGUUUCACUUGACUAGUAUU hit 315 : 31654 31555 (rev) 51.17 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :CUGGUC A :::GUGG U U+ACAA+ AAUUG U+ACA +AGUU+CAG+++UC 35889 GGCUGGUCUAAGUACGGUGG-UACUUACAACGAAUUGCUCACAACCAGUUACAGAUUUCU 35947 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCAC:::U CACUUGACUAG: UU 35948 UUGUUCCUUCUCCACUCCCACUGUUUCACUUGACUAGUAUU 35988 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6764,sp|AC026428.5|AC026428 Homo sapiens chromosome 5 clone CTD-2203I6, complete sequence. ----isReversed: 0 ----hitSequence: AGCUAGUCUGAGUGCAGUCGUGUUUACAACUAAUUGAUCACAACCAGUUACAUAUUUAUUUGUUCUUUUUCUAUUCCCACUGUUUCAUUCUACUAGCCUU hit 316 : 7187 7286 (fwd) 41.14 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GU GA :AGU G U++U+ACAA+UAAUUGAU+ACA +AGUU+CA +++U 7187 AGCUAGUCUGAGUGCAGUCG-UGUUUACAACUAAUUGAUCACAACCAGUUACAUAUUUAU 7245 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUU UC + +CC ACU: U CA U AC:AGC:UU 7246 UUGUUCUUUUUCUAUUCCCACUGUUUCAUUCUACUAGCCUU 7286 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6812,sp|AC026634.11|AC026634 Homo sapiens chromosome , clone RP11-639E23, complete sequence. ----isReversed: 1 ----hitSequence: UGCUAGUCUGAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUCACUAAAGUUGAUAUACAACCUCCCCGCUGCUAAAUUUGGCUGGCUUU hit 317 : 52978 52884 (rev) 33.17 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC::G C GA GGUAG GGGUUAUCA AA U AUUA UUAGU UCA+UAA 111881 UGCUAGUCUGAUGGUAGUGGGUUAUCA----GAACUUAUUAACAUUAGUGUCACUAA-AG 111935 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+ U C CC CCCC CUGCU +A UUG C::GC:UU 111936 UUGAUA-UACAACCUCCCCGCUGCUAAAUUUGGCUGGCUUU 111975 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6881,sp|AC026778.4|AC026778 Homo sapiens chromosome 5 clone CTC-428I11, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGGUUGUUCAGUCAGGUCUAGAUUGAACUCUUGUUCUACUCUUUCCCUCCUUCUCACUCCUGCACUUGACUAGUCUU hit 318 : 95667 95560 (rev) 46.35 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAGG:AGUG:GUUAUC CAAUU+ UUG+U+A GU+AG U AG+++ 99767 AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGGUUGUUCA--GUCAGGUCUAGAUUgaa 99824 __________......__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + CUUGUUCU U C++CC +C:CACU:CUGCACUUGACUAG::UU 99825 CUCUUGUUCUacucuuUCCCUCCUUCUCACUCCUGCACUUGACUAGUCUU 99874 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6887,sp|AC026784.5|AC026784 Homo sapiens chromosome 5 clone CTD-2138O14, complete sequence. ----isReversed: 0 ----hitSequence: GGCCACUCCAAGUGUAGUGGUGUUUACAGCUAAUUGAUCAUAAUCAGUUACAGAUUUAUUUGUUCCUUCUCCACUUCCACUGCUUCACUCGACAAACCUG hit 319 : 68998 69097 (fwd) 47.75 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG+:: UCC A GUAGUGG U++U+ACA +UAAUUGAU+A+A U+AGUU+CAG+++U 68998 GGCCACUCCAAGUGUAGUGG-UGUUUACAGCUAAUUGAUCAUAAUCAGUUACAGAUUUAU 69056 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ CCACUGCU CACU GA ::+CCU 69057 UUGUUCCUUCUCCACUUCCACUGCUUCACUCGACAAACCUG 69097 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6893,sp|AC026790.5|AC026790 Homo sapiens chromosome 5 clone CTD-2228A4, complete sequence. ----isReversed: 1 ----hitSequence: GACUGGCCUGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCAGUCAGUUACAGAUUGAACUCCUGGUUCUACUCUUUCCCUCCUUCUCACUACUGCACUUGACUAGCCCU hit 320 : 26012 25904 (rev) 55.78 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG:C GAAGG:AGUG:GUUAUC CAAUU+AUU +U+A GU+AGUU+CAG+++ 76413 GACUGGCCUGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCA--GUCAGUUACAGAUUgaa 76470 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+GUUCU U C++CC +C:CACU:CUGCACUUG:CUAG:C U 76471 cUCCUGGUUCUacucuuUCCCUCCUUCUCACUACUGCACUUGACUAGCCCU 76521 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6912,sp|AC026827.6|AC026827 Homo sapiens chromosome 8, clone RP11-678C14, complete sequence. ----isReversed: 0 ----hitSequence: GUCUGAUCCAAGUGAAGUGAUGUUUACAACUAAUUGAUCAUGACCAGUUACAGAUUUCUUCAUUUCUUCUCCAAUUCCACUGCUUCACUUGACUAGCCUU hit 321 : 157392 157491 (fwd) 46.95 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G CUG:UCC A G:AGUG U++U+ACAA+UAAUUGAU+A++ +AGUU+CAG+++ C 157392 GUCUGAUCCAAGUGAAGUGA-UGUUUACAACUAAUUGAUCAUGACCAGUUACAGAUU-UC 157449 __.._______________>>>>>>>------->>>>>>>>:: 61 UU..gUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +UUC UUCUCC+ + CACU:CU CACUUGA:UAG CUU 157450 UUcaUUUC-UUCUCCAAUUCCACUGCUUCACUUGACUAGCCUU 157491 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6914,sp|AC026843.9|AC026843 Homo sapiens chromosome 11, clone RP11-261E12, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCGAAGAUAGUGAAUUAUCACAACUGAUUGUUCACAGUUAUAGACUGAACUCUUUGCUCUACUUGUUCCCUUCUUCUCACUAUUGCACUUGACUAGUCAU hit 322 : 141706 141600 (rev) 56.56 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 ::CUGGUCCGAAG::AGUG: UUAUCACAA+U+AUUG+U+ACAGUUA +C G+A UC 24582 AGCUGGUCCGAAGAUAGUGAAUUAUCACAACUGAUUGUUCACAGUUAUAGACUGAACUCU 24641 _______......__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG UCU U C++ C +C:CACU::UGCACUUGACUAG:: U 24642 UUGCUCUacuuguUCCCUUCUUCUCACUAUUGCACUUGACUAGUCAU 24688 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6924,sp|AC026894.7|AC026894 Homo sapiens chromosome , clone RP11-318C2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUUCAAGUGCAGUGAUGUUUACAACUAAUUGAUGACAACCAGUUACAGAUUUCUUUGUUCCUUCUCUGCUCCCACUGCUUCAUUUGACUAGUGUU hit 323 : 110509 110608 (fwd) 54.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGU:C A G:AGUG U++U+ACAA+UAAUUGAU ACA +AGUU+CAG+++UC 110509 GGCUGGUUCAAGUGCAGUGA-UGUUUACAACUAAUUGAUGACAACCAGUUACAGAUUUCU 110567 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC C+C CACU:CU CA UU:ACUAG:+UU 110568 UUGUUCCUUCUCUGCUCCCACUGCUUCAUUUGACUAGUGUU 110608 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6976,sp|AC027237.8|AC027237 Homo sapiens chromosome 15, clone RP11-253M7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUAGCUCAAUUGAUUGUUCGCAGUCAGUUAUAGAUCAAGCUCCUUGUUCUACUCUUCCCCUCUUCUCACUACUGCACUUGACUAGUCUU hit 324 : 93420 93311 (rev) 62.14 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAGG:AGUG:GUUA C CAAUU+AUUG+U+ CAGU+AGUU+ AG++ 64029 GGCUGGUCUGAAGGUAGUGAGUUAGCUCAAUUGAUUGUUCGCAGUCAGUUAUAGAUCaag 64088 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C:CACU:CUGCACUUGACUAG:CUU 64089 cUCCUUGUUCUacucuUCCCCUCUUCUCACUACUGCACUUGACUAGUCUU 64138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6994,sp|AC027290.31|AC027290 Homo sapiens 12 BAC RP11-463O12 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUACAGUGGUGUUUACAGCUAAAUGAUCACAACCACUUACAUAUUUCUUUGUUCCUUCUUUACUCCCACUGCUUCACUUGACUAGCCUU hit 325 : 161530 161431 (rev) 58.12 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA ::AGUGG U++U+ACA +UAA UGAU+ACA +A UU+CA +++UC 15803 GGCUGGUCUGAGUACAGUGG-UGUUUACAGCUAAAUGAUCACAACCACUUACAUAUUUCU 15861 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+ +C+CCCACU::U CACUUGACUAGCCUU 15862 UUGUUCCUUCUUUACUCCCACUGCUUCACUUGACUAGCCUU 15902 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7003,sp|AC027311.4|AC027311 Homo sapiens chromosome 5 clone CTC-229B20, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUCAAAGGUAGUGAGUUCUCUCAAUGGAUUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUACUCUUUCCUCCUUUUUCACUACUGUACUCAACUAGUCUU hit 326 : 93476 93366 (rev) 55.08 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU:C AAGG:AGUG:GUU UC CAAU +AUUG+U+ACAGU+AGUU+CAG++ 25588 GGCUGGUUCAAAGGUAGUGAGUUCUCUCAAUGGAUUGUUCACAGUCAGUUACAGAUCaaa 25647 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CUCC + :CACU:CUG ACU :ACUAG:CUU 25648 cUCCUUGUUCUacucuuUCCUCCUUUUUCACUACUGUACUCAACUAGUCUU 25698 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7074,sp|AC027687.7|AC027687 Homo sapiens chromosome 16 clone RP11-61L4, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGUCUCAACCCGUUGCAGAUGUGUUUGUUUUGUUUUGUUUUGUUUUGUUUUCUCCACUCCCACUGCUUCACCUGAUUAGCCUU hit 327 : 144472 144356 (rev) 31.87 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUG UC GA G:AGUGG U++U+ACAA+UAAUUG U+ CA + GUU CAG++ U 24695 AGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUG-UCUCAACCCGUUGCAGAUGUGU 24752 _______..................__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU..................UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU U UUCUCC+C+CCCACU:CU CAC UGA UAGC:UU 24753 UUGUUUUguuuuguuuuguuuuguuUUCUCCACUCCCACUGCUUCACCUGAUUAGCCUU 24811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7081,sp|AC027702.18|AC027702 Homo sapiens chromosome 8, clone RP11-108L9, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAGUGAUGUUUACAACUAAUUGGUCACAUUCAGUUACAGAUUUAUUUGUUCCUUCUCCAUUCCCACUGCUUCACUUGACUAGCCUU hit 328 : 97096 96997 (rev) 63.94 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA G:AGUG U++U+ACAA+UAAUUG U+ACA U+AGUU+CAG+++U 28624 GGCUGGUCUGAGUGCAGUGA-UGUUUACAACUAAUUGGUCACAUUCAGUUACAGAUUUAU 28682 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +C CACU:CU CACUUGACUAGCCUU 28683 UUGUUCCUUCUCCAUUCCCACUGCUUCACUUGACUAGCCUU 28723 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7151,sp|AC034235.5|AC034235 Homo sapiens chromosome 5 clone CTD-2262B2, complete sequence. ----isReversed: 0 ----hitSequence: GGUCAGUAGGGAAAUAGUGAGUUAUCUCAACUGAUAGUUCACAGUAUCAGUUACAGAUAGAACUCCUUGUUCUACUUUUCCUCCCUUCUCACUGCUGCACUUUACUAGUCUU hit 329 : 98352 98463 (fwd) 46.14 bits <<<<<<<<-----<<<<<<<_________________________..____________. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgU..UAGUUUCAguAa. 57 G::::GU: G A+:UAGUG:GUUAUC CAA+U+AU G+U+ACAGU +AGUU+CAG++A 98352 GGUCAGUAGGGAAAUAGUGAGUUAUCUCAACUGAUAGUUCACAGUauCAGUUACAGAUAg 98411 ...__________.....__________>>>>>>>------->>>>>>>>:: 58 ...UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CUCCC +C:CACUG:UGCACUU:AC::::CUU 98412 aacUCCUUGUUCUacuuuUCCUCCCUUCUCACUGCUGCACUUUACUAGUCUU 98463 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7153,sp|AC034238.4|AC034238 Homo sapiens chromosome 5 clone CTD-2313F11, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAAUGGUGUUUAAACUAAUUGAUCACAAUGUUAUGGAUUUCUUUGUUCCUCCUCCACUCCCAUUGCUUCACUUGACUAGCCUU hit 330 : 60537 60633 (fwd) 47.74 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA G:A:UGG U++U+A AA+UAAUUGAU+ACA U GUU+ G+++UC 60537 GGCUGGUCUGAGUGCAAUGG-UGUUUA-AACUAAUUGAUCACAAU--GUUAUGGAUUUCU 60592 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U CUCC+C+CCCA:U:CU CACUUGACUAGCCUU 60593 UUGUUCCUCCUCCACUCCCAUUGCUUCACUUGACUAGCCUU 60633 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7156,sp|AC034241.4|AC034241 Homo sapiens chromosome 5 clone CTD-2360O20, complete sequence. ----isReversed: 0 ----hitSequence: GGCAGGCCUGAUGGCGGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAUUUACAAAUCAAAUUCCUUGUUCUACUACUCCCACUUUCGCCGCCUCAUUUCCUGCUUU hit 331 : 43137 43242 (fwd) 30.38 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +GC :G C GA GG::G G:GUUAUC CA UU+AUUG+U+ACAGU+A UU+CA ++ 43137 GGCAGGCCUGAUGGCGGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAUUUACAAAUCaaa 43196 .__________...__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU + +CC+C+ :C C::C CA UU C: GC+UU 43197 uUCCUUGUUCUacuACUCCCACUUUCGCCGCCUCAUUU--CCUGCUUU 43242 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7159,sp|AC034244.6|AC034244 Homo sapiens chromosome 5 clone RP11-101B14, complete sequence. ----isReversed: 1 ----hitSequence: GGAUGGUCCGAGUGCAGUGAUGUUUUCAACUAAUUGAUGACAACUGGUUAGAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACCAGCCUU hit 332 : 139579 139480 (rev) 60.97 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:U:GUCCGA G:AGUG U++U+ CAA+UAAUUGAU ACA U+GUU+ AG+++UC 43314 GGAUGGUCCGAGUGCAGUGA-UGUUUUCAACUAAUUGAUGACAACUGGUUAGAGAUUUCU 43372 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C CACU:CU CACUUGAC:A:CCUU 43373 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACCAGCCUU 43413 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7173,sp|AC035140.7|AC035140 Homo sapiens chromosome 5 clone CTD-2631K10, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGACCUGAGAGUAGUGAGUUAUCUCAAUUGAUUAUUCAGUCAGUUACAGAUCAAACUCUUUGUUCUACUCUUUCCGCCUUCUCACUACUAUACUUAACUAGUCUU hit 333 : 61416 61309 (rev) 45.38 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:: GA +G:AGUG:GUUAUC CAAUU+AUU +U+A GU+AGUU+CAG++ 550 GGCUGACCUGAGAGUAGUGAGUUAUCUCAAUUGAUUAUUCA--GUCAGUUACAGAUCaaa 607 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU UUC+ CC +C:CACU:CU ACUU ::UAG:CUU 608 cUCUUUGUUCUacucuUUCCGCCUUCUCACUACUAUACUUAACUAGUCUU 657 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7182,sp|AC036102.8|AC036102 Homo sapiens chromosome 15 clone CTD-2297L20 map 15q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGAUGUGAGUGGAGUGGUAUUUACAGCUAAUUGAGCACAACCAGUUACAGAUUACUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGAAUAGCUUU hit 334 : 9511 9412 (rev) 50.68 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GCUG:U GA G AGUGG U +U+ACA +UAAUUGA +ACA +AGUU+CAG+++ C 118093 GGCUGAUGUGAGUGGAGUGG-UAUUUACAGCUAAUUGAGCACAACCAGUUACAGAUUACU 118151 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU CU CACUU A:UAGC+UU 118152 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGAAUAGCUUU 118192 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7195,sp|AC036222.23|AC036222 Homo sapiens chromosome 17, clone RP11-433M22, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAACUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCGCUUGACUAGCCUU hit 335 : 33124 33025 (rev) 69.15 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:AGUGG U++U+ACAA+UAA UGAU+ACA +AGUU+CAG+++UC 141842 GGCUGGUCCAAGUGCAGUGG-UGUUUACAACUAACUGAUCACAACCAGUUACAGAUUUCU 141900 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU C CUUGACUAGCCUU 141901 UUGUUCCUUCUCCACUCCCACUGCUUCGCUUGACUAGCCUU 141941 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7279,sp|AC046130.25|AC046130 Homo sapiens 12 BAC RP11-847H18 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: UGAUCGUCUGAAUGCAGUGGUGUUUAGAACUAAUUGAUAACUACCAGUUACAGAUUUCUUUGUUCCUUCUCCACCUCCACUGCGUCACUUGACUAGCCAA hit 336 : 44394 44295 (rev) 45.52 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G:U:GUC GAA G:AGUGG U++U+A AA+UAAUUGAU AC +AGUU+CAG+++UC 132207 UGAUCGUCUGAAUGCAGUGG-UGUUUAGAACUAAUUGAUAACUACCAGUUACAGAUUUCU 132265 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+CC CCACU:C CACUUGAC:A:C: 132266 UUGUUCCUUCUCCACCUCCACUGCGUCACUUGACUAGCCAA 132306 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7290,sp|AC046174.6|AC046174 Homo sapiens chromosome 8, clone RP11-621B3, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUGGUGAGUUAUUUCAAGUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUCUCCCCUUGUCUUACUACUGCACUUGACUAGUCAU hit 337 : 68759 68649 (rev) 57.11 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAGG::GU :GUUAU+ CAA U+AUUG+U+ACAGU+AGUU+CAG+++ 92861 GGCUGGUCUGAAGGUGGUGAGUUAUUUCAAGUGAUUGUUCACAGUCAGUUACAGAUUgaa 92920 .__________...__________...>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU...UUCUccCCCC...ccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UCUCCCC+ : AC::CUGCACUUGACUAG:C U 92921 cUCCUUGUUCUacuCUCUCCCCUUgucUUACUACUGCACUUGACUAGUCAU 92971 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7309,sp|AC048351.18|AC048351 Homo sapiens 3 BAC RP11-175P19 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCCAAAGGGAAUGAGUUAUCUCAAUUGAUUAAUCACAGUCAGUUACAGAUUGAACUCUUUGUUCUACUCUUUGCCCCCUUCUCACUAUUGCUCUUGACUAGUCUU hit 338 : 104745 104855 (fwd) 55.05 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:UCC AAG A:UG:GUUAUC CAAUU+AUU AU+ACAGU+AGUU+CAG+++ 104745 GGCUGAUCCAAAGGGAAUGAGUUAUCUCAAUUGAUUAAUCACAGUCAGUUACAGAUUgaa 104804 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU U C+CCC +C:CA:U UGC CUUGA:UAG:CUU 104805 cUCUUUGUUCUacucuuUGCCCCCUUCUCACUAUUGCUCUUGACUAGUCUU 104855 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7353,sp|AC055733.16|AC055733 Homo sapiens 3 BAC RP11-39E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGCAGUUGAGUUAUCUCAACUGAUUGUUCACAGUCAGUUACAGAUCCAACACCUUUCUACUCUUUCUCCCUUCUCACUGAAAUGCACUUGACUAGUUAA hit 339 : 129546 129656 (fwd) 41.80 bits <<<<<<<<-----<<<<<.<<_____________________________________.. 1 ggcugGUcCGAAgguagU.ggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.. 57 +:CUGGUC GAAG :AGU G:GUUAUC CAA+U+AUUG+U+ACAGU+AGUU+CAG++ 129546 GGCUGGUCUGAAGGCAGUuGAGUUAUCUCAACUGAUUGUUCACAGUCAGUUACAGAUCca 129605 ..__________...__________>>>>>>>-..------>>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcU..gcaCUUgACuagccUU 101 CCUU+ U+ UUCUCCC +C:CACU: GCACUUGACUAG:+ 129606 acACCUUUCUACucuUUCUCCCUUCUCACUGAAauGCACUUGACUAGUUAA 129656 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7382,sp|AC055866.19|AC055866 Homo sapiens chromosome 17, clone RP11-376M2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAUAGUAGUGGGUUAUCAGAACUUAUCAACGUUAGGGUCACUAAAGUUGGUAUACAACCCCCCACUGCUAAAUUUGGUUUU hit 340 : 182298 182209 (rev) 28.65 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUCCGA +GUAGUGGGUUAUCA AA U AU+A GUUAG UCA+UAA 22449 GGCUGGUCCGAUAGUAGUGGGUUAUCA----GAACUUAUCAACGUUAGGGUCACUAA-AG 22503 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCCCCACUGCU +A UUG G:+UU 22504 UUGGUAUa---CAACCCCCCACUGCUAAAUUUG----GUUUU 22538 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7382,sp|AC055866.19|AC055866 Homo sapiens chromosome 17, clone RP11-376M2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAUGGUAGUGGGUCAUCAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCCCCCAUUGCUAAAUUUCACUGGAUUA hit 341 : 117233 117140 (rev) 37.28 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 + C:GGU CGA GGUA UGGGU AUCA AA U AUUA UUAGU UCA+UAA 87514 GGCUGGUCCGAUGGUAGUGGGUCAUCA----GAACUUAUUAACAUUAGUGUCACUAA-AG 87568 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCCCCA UGCU +A UU ACU:G +U 87569 UUGGUAUa---CAACCCCCCAUUGCUAAAUUUCACUGGAUUA 87607 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7390,sp|AC058784.17|AC058784 Homo sapiens chromosome 13 clone RP11-288O16, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAAUAGUGUUUAUAGCUAAUUGGUCCCAACCAGUUACAGAUUUUCUUGUUCCUGCUCCACUCCCACUGCUUCACUUGACCAGCCUU hit 342 : 109437 109338 (rev) 48.58 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUC GA G:A:U:G U++U+A A +UAAUUG U+ CA +AGUU+CAG+++U C 54345 GGCUGGUCUGAGUGCAAUAG-UGUUUAUAGCUAAUUGGUCCCAACCAGUUACAGAUUUUC 54403 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U CUCC+C+CC:A:U:CU CACUUGAC:AGCCUU 54404 UUGUUCCUGCUCCACUCCCACUGCUUCACUUGACCAGCCUU 54444 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7411,sp|AC060798.10|AC060798 Homo sapiens chromosome 17, clone RP11-615P24, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUCGAGUGCAGUGGUAUUUACAACUGAUUGAUCAUAAUCAGGUACAGAUUUCUUUGUUCCCUCUUCACUCCCACUGCUUUAUUUAAACUU hit 343 : 59792 59697 (rev) 42.71 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G +UG :CGA G:AGUGG U +U+ACAA+U+AUUGAU+A+A U+AG U+CAG+++UC 112203 GGCUGGUUCGAGUGCAGUGG-UAUUUACAACUGAUUGAUCAUAAUCAGGUACAGAUUUCU 112261 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UCU+C+C+CCCACU:CU UU: UA+ CUU 112262 UUGUUCCCUCUUCACUCCCACUGCU----UUAUUUAAACUU 112298 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7414,sp|AC060812.15|AC060812 Homo sapiens chromosome 11, clone RP11-120E20, complete sequence. ----isReversed: 0 ----hitSequence: UGCUGGUGUCCAUGGUGGUGGGUUAUCAGAACUUAUUAAUGUCACUGUCACUAAAGUUGGUAUAUAACCCCCCACUGCUAAAUUUGACUAGCUUA hit 344 : 114936 115030 (fwd) 31.16 bits <<<<<<<.<-----<<<<<<<_______________________________________ 1 ggcugGU.cCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUC 59 :GCUGGU :C A GGU:GUGGGUUAUCA AA U AUUA GU+A U UCA+UAA 114936 UGCUGGUgUCCAUGGUGGUGGGUUAUCA----GAACUUAUUAAUGUCACUGUCACUAA-A 114990 ________.__________>>>>>>>------->>>>>>>>:: 60 cUUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U U CCCCCCAC:GCU +A UU:ACUAGC:U 114991 GUUGGUAUa---UAACCCCCCACUGCUAAAUUUGACUAGCUUA 115030 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7414,sp|AC060812.15|AC060812 Homo sapiens chromosome 11, clone RP11-120E20, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCCAAUGGUAAUGGGUUAUCAGAACUUAUUAACACCAGUGUCACUAAAGUUGAUGUACAGUCCCCCCACUGCUAAAUUUGACUGGCUUA hit 345 : 116284 116378 (fwd) 34.18 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC:GGUCC A GGUA:UGGGUUAUCA AA U AUUA +AGU UCA+UAA 116284 AGCUGGUCCAAUGGUAAUGGGUUAUCA----GAACUUAUUAACACCAGUGUCACUAA-AG 116338 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U U C CCCCCCA:UGCU +A UUGACU:GC:U 116339 UUGAUG-UACAGUCCCCCCACUGCUAAAUUUGACUGGCUUA 116378 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7445,sp|AC062037.5|AC062037 Homo sapiens BAC clone RP11-717A5 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAGUAGAAUGAUUUUUACAACGAAUUGAUCACAACCAGUUACAGAUGUCUUUGUUCCUUCUCCACUCCCACUGCUUCACCUGACUAGCCUU hit 346 : 19931 20030 (fwd) 58.47 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCCGA : A:UG UU+U+ACAA+ AAUUGAU+ACA +AGUU+CAG++ UC 19931 GGCUGGUCCGAGUAGAAUGA-UUUUUACAACGAAUUGAUCACAACCAGUUACAGAUGUCU 19989 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C CA:U :U CAC UGACUAGCCUU 19990 UUGUUCCUUCUCCACUCCCACUGCUUCACCUGACUAGCCUU 20030 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7445,sp|AC062037.5|AC062037 Homo sapiens BAC clone RP11-717A5 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGGUAGUGAGUUAUCCCAACUGAUUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUACCCUUUCCCCACUUCUCACUACUGCACUUGACUAGACUU hit 347 : 86853 86963 (fwd) 68.63 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G CUGGUCC AAGG:AGUG:GUUAUC+CAA+U+AUUG+U+ACAGU+AGUU+CAG++ 86853 GGCUGGUCCAAAGGUAGUGAGUUAUCCCAACUGAUUGUUCACAGUCAGUUACAGAUCaaa 86912 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C:CACU:CUGCACUUGACUAG CUU 86913 cUCCUUGUUCUacccuuUCCCCACUUCUCACUACUGCACUUGACUAGACUU 86963 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7479,sp|AC063979.4|AC063979 Homo sapiens chromosome 5 clone RP11-474H20, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGACCUGAGAGUAGUGAGUUAUCUCAAUUGAUUAUUCAGUCAGUUACAGAUCAAACUCUUUGUUCUACUCUUUCCGCCUUCUCACUACUAUACUUAACUAGUCUU hit 348 : 8453 8346 (rev) 45.38 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:: GA +G:AGUG:GUUAUC CAAUU+AUU +U+A GU+AGUU+CAG++ 165208 GGCUGACCUGAGAGUAGUGAGUUAUCUCAAUUGAUUAUUCA--GUCAGUUACAGAUCaaa 165265 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU UUC+ CC +C:CACU:CU ACUU ::UAG:CUU 165266 cUCUUUGUUCUacucuUUCCGCCUUCUCACUACUAUACUUAACUAGUCUU 165315 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7514,sp|AC064871.6|AC064871 Homo sapiens BAC clone RP11-598C21 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAAAAUAGUGAGUUAUCUCAAUUGAUUGUUCUGCGUCAGUUACAGAUCCAGCUCCUUGUUCUACUCUUUGCCCCCUUCUCACUACUGCACUUGACUGGUUUA hit 349 : 67406 67296 (rev) 52.90 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::C:GGUCC AA+::AGUG:GUUAUC CAAUU+AUUG+U+ GU+AGUU+CAG++ 126792 AGCUGGUCCAAAAAUAGUGAGUUAUCUCAAUUGAUUGUUCUGCGUCAGUUACAGAUCcag 126851 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CACU::UGCACUUGACU:G::U 126852 cUCCUUGUUCUacucuuUGCCCCCUUCUCACUACUGCACUUGACUGGUUUA 126902 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7589,sp|AC067902.6|AC067902 Homo sapiens chromosome 11, clone RP11-72C9, complete sequence. ----isReversed: 1 ----hitSequence: GGAUGGUCCAAGUGCAGUGGUGUUUACAACUAACUGAUCACAACCAGUUACAGACUUCUUUGUCUUUUCCACUCUCACUGCUUCAUCUGACUAGCCUU hit 350 : 117945 117848 (rev) 52.51 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:UGGUCC A G:AGUG U++U+ACAA+UAA UGAU+ACA +AGUU+CAG+ + C 71127 GGAUGGUCCAAGUGCAGUGG-UGUUUACAACUAACUGAUCACAACCAGUUACAGACU-UC 71184 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU++UC UU UCC+C+C CACU:CU CA UGACUA:CCUU 71185 UUUGUC-UUUUCCACUCUCACUGCUUCAUCUGACUAGCCUU 71224 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7720,sp|AC068448.10|AC068448 Homo sapiens chromosome 15, clone RP11-624A21, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAGUGGGGUGUACAAGGAAUUGAUUACAAGCAGUUACAGGUUUCUUUGCUCCUUUUCCAUUUCCACUGCUGCUUCACUUCACUAGCCUU hit 351 : 115148 115046 (rev) 45.20 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU GA G:AGUGGG U U ACAA AAUUGAUUACA +AGUU+CAG ++UC 50061 GGCUGGUCUGAGUGCAGUGGGGUGU-ACAAGGAAUUGAUUACAAGCAGUUACAGGUUUCU 50119 _________________>>>>>>>---...---->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 UUG UC UU UCC+ + CCACU:CUGC ACUU ACUAGCCUU 50120 UUGCUCCUUUUCCAUUUCCACUGCUGCuucACUUCACUAGCCUU 50163 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7785,sp|AC068657.6|AC068657 Homo sapiens chromosome 5 clone CTB-67I13, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGUCUGAGUGCAGUGGUGUUUACAACUAACUGAUCACAACCAGUUACAGAUCUUUUUGUUUCUUCUCCACUCCCACUGUUUGACUUGGCUAGCCCU hit 352 : 89169 89268 (fwd) 52.18 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GG:UGG C GA :AGUGG U++U+ACAA+UAA UGAU+ACA +AGUU+CAG++ U 89169 GGUUGGUCUGAGUGCAGUGG-UGUUUACAACUAACUGAUCACAACCAGUUACAGAUCuUU 89227 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC UUCUCC+C+CCCACU: U ACUUG CUA:CC U 89228 UUGUUUC-UUCUCCACUCCCACUGUUUGACUUGGCUAGCCCU 89268 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7789,sp|AC068669.21|AC068669 Homo sapiens chromosome 17, clone RP11-749I16, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAUGGUAGUGGGUUAUCAGAGCUUAUUAACAUUAGUGUCACUGCAGUUGGUAUACAAACCCCCCACUGCUAAAUUUGACUGGCUUU hit 353 : 188193 188287 (fwd) 40.10 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUC GA GGUAGUGGGUUAUCA A U AUUA UUAGU UCA+U 188193 GGCUGGUCUGAUGGUAGUGGGUUAUCA----GAGCUUAUUAACAUUAGUGUCACUGC-AG 188247 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+ U C CCCCCCACUGCU +A UUGACU:GC+UU 188248 UUGGUA-UACAAACCCCCCACUGCUAAAUUUGACUGGCUUU 188287 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7810,sp|AC068724.7|AC068724 Homo sapiens chromosome 15 clone RP11-473C18 map 15q15, complete sequence. ----isReversed: 0 ----hitSequence: CACGGGUCCAAGUGCAGUGGUGUUUACAACUAAUUCAUCACAACAAGUUACAGAUUUCUUUGUUCCUUUUCCAUUCCCACUGCUUCACUUGACUAGCCCU hit 354 : 187216 187315 (fwd) 52.42 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :C GGUCC A G:AGUGG U++U+ACAA+UAAUU AU+ACA AGUU+CAG+++UC 187216 CACGGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUCAUCACAACAAGUUACAGAUUUCU 187274 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UU UCC+ +CCCACU:CU CACUUGACU G: U 187275 UUGUUCCUUUUCCAUUCCCACUGCUUCACUUGACUAGCCCU 187315 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7826,sp|AC068768.31|AC068768 Homo sapiens 12 BAC RP11-282O18 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GCUCGGCCUGGUAGUGAGUUAUCUUAAUUAAUUGUUCACAGUCACAGAUCAAACUUCUUGUUCUACUCUUUCCCCCUUCUCUACUGUACUUGACUAGUCUU hit 355 : 87603 87503 (rev) 35.89 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 G:::GG:C G G:AG G:GUUAUC AAUUAAUUG+U+ACAGU+A + ++AA U 156 GCUCGGCCUG---GUAGUGAGUUAUCUUAAUUAAUUGUUCACAGUCACAGA-UCAAAcUU 211 ________...__________>>>>>>>------->>>>>>>>:: 60 cUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUCU U UCCCCC :C CU:CUG ACUUG:CU:::CUU 212 CUUGUUCUacuCUUUCCCCCUUCUCUACUGUACUUGACUAGUCUU 256 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7849,sp|AC068831.17|AC068831 Homo sapiens chromosome 15, clone RP11-2O19, complete sequence. ----isReversed: 1 ----hitSequence: UGCUGGUCCGAGUGUAGUGGUGUUUAUAAGUCAGUGAUCACAGCCAGUUACAGAUUUGUUCCUCUCCCACUCCCACUGCAUUACUUGACUAGAAAG hit 356 : 66144 66049 (rev) 46.42 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : CUGGUCCGA GUAGUGG U++U+A AA U A UGAU+ACAG +AGUU+CAG+++ 70832 UGCUGGUCCGAGUGUAGUGG-UGUUUAUAAGUCAGUGAUCACAGCCAGUUACAGAUU-UG 70889 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UCU +CC+C+CCCACUGC ACUUGACUAG : 70890 UUCCUCU---CCCACUCCCACUGCAUUACUUGACUAGAAAG 70927 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7861,sp|AC068896.9|AC068896 Homo sapiens chromosome 10 clone RP11-464O2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUCGAUCAAAACCAGUUACAAAUUUAUUCCUUCCUUCUCUAUUAUCACUGCUUCACUUGACCAGCCUU hit 357 : 73196 73295 (fwd) 44.37 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUC GA G:AGUG U++U+ACAA+UAAU GAU+A A +AGUU+CA +++U 73196 GGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUCGAUCAAAACCAGUUACAAAUUUAU 73254 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UUC UUCUC + + CACU:CU CACUUGAC:AGCCUU 73255 UCCUUCCUUCUCUAUUAUCACUGCUUCACUUGACCAGCCUU 73295 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7861,sp|AC068896.9|AC068896 Homo sapiens chromosome 10 clone RP11-464O2, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCUGCAGGUAGAGUUAUCUCAAUUGAUUGUUUAUGGUUACAGACUAAACCCUUGUUCUACUCUUUCCCCCUUCUCACUACUGCACUUGACUAGUCUU hit 358 : 122062 121960 (rev) 47.29 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G::UGGUC G AGG:AG G UUAUC CAAUU+AUUG+UUA+ +GUU+CAG+ + 72844 GGUUGGUCUGCAGGUAGAG--UUAUCUCAAUUGAUUGUUUAU----GGUUACAGACUaaa 72897 __________.....__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +CCUUGUUCU UUC+CCC +C C CU:CUGCACUUGACUA::CUU 72898 CCCUUGUUCUacucuUUCCCCCUUCUCACUACUGCACUUGACUAGUCUU 72946 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7929,sp|AC069200.6|AC069200 Homo sapiens BAC clone RP11-177J6 from 4, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCCAAGUGCAAUGGUGUAUACAACUAAUCGAUGACAAACCAGUUACAGAUUUCUUUCUUCCUUGUCCACCCCCACUGCUUCACUUUAUGAGCCUA hit 359 : 45327 45427 (fwd) 29.98 bits <<<<<<<<-----<<<<<<<______________________._________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAc.AgUUAGUUUCAguAaUC 59 :GCU U C A G:A:UGG U++ +ACAA+UAAU GAU AC A +AGUU+CAG+++UC 45327 AGCUGGUCCAAGUGCAAUGG-UGUAUACAACUAAUCGAUGACaAACCAGUUACAGAUUUC 45385 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC UU UCC+CCCCCA:U:CU CACUU A AGC:U 45386 UUUCUUCCUUGUCCACCCCCACUGCUUCACUUUAUGAGCCUA 45427 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7929,sp|AC069200.6|AC069200 Homo sapiens BAC clone RP11-177J6 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GACUAGUCUAAAGGUAAUGGGUUAUUUCAUUUGAUUGUUCACAGUCCGUUACAGAUUGAACUCCUUGUUCUACUCUUUCACCCUCUUCUCACUACUGCACUUGACAAAUUUA hit 360 : 134399 134288 (rev) 39.19 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:+U:GUC AAGG:A:UG GUUAU+ CA UU+AUUG+U+ACAGU+ GUU+CAG+++ 14532 GACUAGUCUAAAGGUAAUGGGUUAUUUCAUUUGAUUGUUCACAGUCCGUUACAGAUUgaa 14591 .__________.....___.._______>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUC..UccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC +C C +C CA:U:CUGCACUUGAC:A+:+U 14592 cUCCUUGUUCUacucuUUCacCCUCUUCUCACUACUGCACUUGACAAAUUUA 14643 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7953,sp|AC069242.13|AC069242 Homo sapiens 3 BAC RP11-554J1 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUAGACCAGAGGUAGUGAGUUAUCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUCGUUCUACUCAUUGCUGUCUUCUCACUGCUGCACUUGACUAGUCUU hit 361 : 139034 138924 (rev) 48.11 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CU:G CC AGGUAGUG:GUUAUC CAAU +AUUG+U+ACAGU+AGUU+CAG+++ 45631 AGCUAGACCAGAGGUAGUGAGUUAUCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUgaa 45690 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU GUUCU U CU C +C:CACUGCUGCACUUG C:AG::UU 45691 cUCCUCGUUCUacucauUGCUGUCUUCUCACUGCUGCACUUGACUAGUCUU 45741 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8031,sp|AC069483.6|AC069483 Homo sapiens, clone RP11-29M5, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUGAUUAAAACCAGUCACAGGUUUCUUCAUUUCUUCUUCACUCACACUCUUUCACUUUGACUAGUCUU hit 362 : 18203 18303 (fwd) 43.70 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCC A AGUG U++U+ACAA+UAAUUGAUUA A +AGU +CAG ++ C 18203 GGCUGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUGAUUAAAACCAGUCACAGGUU-UC 18260 __.._______________>>>>>>>-----.-->>>>>>>>:: 61 UU..gUUCUUUCUccCCCCccAcugcUgcaC.UUgACuagccUU 101 UU +UUC UUCU+C+C+C CACU U CAC UUGACUAG:CUU 18261 UUcaUUUC-UUCUUCACUCACACUCUUUCACuUUGACUAGUCUU 18303 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8037,sp|AC069509.16|AC069509 Homo sapiens 3 BAC RP11-406M8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAAUGGUGUUUGCAACUAAGUGAUUACAAACAGUUGUGGAUCUCUUUGUUUCUUCUCCACUCCCACUGCUUUAUUUGACUAAGUUU hit 363 : 50904 51003 (fwd) 41.81 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +++UGGUCC A G:A:UGG U++U+ CAA+UAA UGAUUACA +AGUU G++ UC 50904 GGCUGGUCCAAGUGCAAUGG-UGUUUGCAACUAAGUGAUUACAAACAGUUGUGGAUCUCU 50962 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUCC+C+CCCA:U:CU A UUGACUA+++UU 50963 UUGUUUCUUCUCCACUCCCACUGCUUUAUUUGACUAAGUUU 51003 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8066,sp|AC072023.9|AC072023 Homo sapiens 3 BAC RP11-3J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GUCUCCUCCAAAUGCAGUCGUGUUUACAACUGAUUAGUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCUCACUGCUUCACUUGAUGAGCAUU hit 364 : 43742 43841 (fwd) 46.35 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 CU: UCC AA G:AGU U++U+ACAA+U+AUU U+ACA +AGUU+CAG+++UC 43742 GUCUCCUCCAAAUGCAGUCG-UGUUUACAACUGAUUAGUCACAACCAGUUACAGAUUUCU 43800 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C ACU:CU CACUUGA :AG UU 43801 UUGUUCCUUCUCCACUCUCACUGCUUCACUUGAUGAGCAUU 43841 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8066,sp|AC072023.9|AC072023 Homo sapiens 3 BAC RP11-3J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GUCUAGUCCAAGUGUGGUGGUGUUUCCAACUGAUUAGUCACAACAAGUUACAGAUUUCUUUGUUCCUUCUCCACUCUCAAUGCUUCACUUGAUAUUAUAU hit 365 : 44030 43931 (rev) 32.47 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 + : UCC A GU: UG U++U++CAA+U+AUU U+ACA AGUU+CAG+++UC 68376 GUCUAGUCCAAGUGUGGUGG-UGUUUCCAACUGAUUAGUCACAACAAGUUACAGAUUUCU 68434 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C CA :GCU CACUUGA : + U 68435 UUGUUCCUUCUCCACUCUCAAUGCUUCACUUGAUAUUAUAU 68475 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8137,sp|AC073140.5|AC073140 Homo sapiens BAC clone RP11-731B4 from 7, complete sequence. ----isReversed: 0 ----hitSequence: AGUUGGUCCGAGUGUUGUGGGUUAUUGUUAAGUUGAUUUAACAUUGUCUCCCCCCACAACCGCGCUUGACUAGCUUG hit 366 : 96128 96204 (fwd) 34.84 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G:UGGUCCGA G::GUGGGUUAU+ UUA GUU+ UUU AA C 96128 AGUUGGUCCGAGUGUUGUGGGUUAUUG-----------UUAA-GUUGAUUU----AA-CA 96170 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +UCU CCCCCCAC::C GC CUUGACUA:C:U 96171 UU-GUCU------CCCCCCACAACCGCGCUUGACUAGCUUG 96204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8137,sp|AC073140.5|AC073140 Homo sapiens BAC clone RP11-731B4 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCCCCCACUGCUAAAUUUGACUGGCUUU hit 367 : 117955 118048 (fwd) 54.07 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUCCGA GGUAGUGGGUUAUCA AA U AUUA UUAGU UCA+UAA 117955 GGCUGGUCCGAUGGUAGUGGGUUAUCA----GAACUUAUUAACAUUAGUGUCACUAA-AG 118009 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCCCCACUGCU +A UUGACU:GC+UU 118010 UUGGUAUa---CAACCCCCCACUGCUAAAUUUGACUGGCUUU 118048 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8161,sp|AC073195.5|AC073195 Homo sapiens BAC clone RP11-214N9 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGUAAGGAGUUAUCUUGAUUGUUCAUUCAGUUACCAAAUCAAACUCCUUGUUCUACUCUUCCCCCUUUCUCACUACUGCACUUGACUAGUCUU hit 368 : 84572 84676 (fwd) 47.07 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGAAGG:A::G:GUUAUC U+AUUG+U+A+ U+AGUU+C +A+ 84572 GGCUGGUCCGAAGGUAAGGAGUUAUCU----UGAUUGUUCAU--UCAGUUACCAAAUcaa 84625 ..__________...._______.___>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU....UUCUccC.CCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCC +C:C::U:CUGCACUUGACUAG:CUU 84626 acUCCUUGUUCUacucUUCCCCCuUUCUCACUACUGCACUUGACUAGUCUU 84676 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8201,sp|AC073288.27|AC073288 Homo sapiens 3 BAC RP11-543D10 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAGGUGCAGUGGUGUUUACAGCUAAUUGAUCACAGCCAGUUACAGAUUUCUUUGUUCCUUCCACUCCCACUGCUUCACUUGACUAGCCUA hit 369 : 1119 1216 (fwd) 57.42 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC G:AGUGG U++U+ACA +UAAUUGAU+ACAG +AGUU+CAG+++UC 1119 GGCUGGUCCAGGUGCAGUGG-UGUUUACAGCUAAUUGAUCACAGCCAGUUACAGAUUUCU 1177 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UCC+C+CCCACU:CU CACUUGACUAGCCU 1178 UUGUUCCu---UCCACUCCCACUGCUUCACUUGACUAGCCUA 1216 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8211,sp|AC073319.4|AC073319 Homo sapiens BAC clone RP11-279M2 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCCAAAGGUAAUGAGUUAACUCAACUGACUCUUCACACUUAGUUACAAAUCAAACUCCUUGUUCUACUCCUUCCUUCUUUUUAAUUAUUGCACUUGACUGAUUAG hit 370 : 3264 3374 (fwd) 29.28 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:+:GG:CC AAG :A:U :GUUA C CAA+U+A U +U+ACA UUAGUU+CA ++ 3264 GGCUGGCCCAAAGGUAAUGAGUUAACUCAACUGACUCUUCACACUUAGUUACAAAUCaaa 3323 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CU+C + : A:U: UGCACUUG:CU:+:+ 3324 cUCCUUGUUCUacuccuUCCUUCUUUUUAAUUAUUGCACUUGACUGAUUAG 3374 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8212,sp|AC073320.8|AC073320 Homo sapiens BAC clone RP11-306G20 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGUUUACAACUCUUGAUUACAGAUUUCUUUGUUCCUUCUCCAUCCCCACUGCUUCACUUGACUAGUCUU hit 371 : 150402 150487 (fwd) 33.95 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUC GA G:AGUG UUA+ A U + U+ UU+CAG+++UC 150402 GGCUGGUCUGAGUGCAGUGU-UUACAA-----------CUCU---UGAUUACAGAUUUCU 150446 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ CC CACU:CU CACUUGACUAG:CUU 150447 UUGUUCCUUCUCCAUCCCCACUGCUUCACUUGACUAGUCUU 150487 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8212,sp|AC073320.8|AC073320 Homo sapiens BAC clone RP11-306G20 from 7, complete sequence. ----isReversed: 1 ----hitSequence: UGCUGGUCCAGGUGCAGUGGUGUUUAAAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUACACGCCCACUGCUUCACUUGACUAGCUUU hit 372 : 157785 157686 (rev) 57.34 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUGGUCC G:AGUGG U++U+A AA+UAAUUGAU+ACA +AGUU+CAG+++UC 27489 UGCUGGUCCAGGUGCAGUGG-UGUUUAAAACUAAUUGAUCACAACCAGUUACAGAUUUCU 27547 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+C CCCACU:CU CACUUGACUAGC:UU 27548 UUGUUCCUUCUACACGCCCACUGCUUCACUUGACUAGCUUU 27588 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8322,sp|AC073575.30|AC073575 Homo sapiens 12 PAC RP1-267L14 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AACUGGUCCCAAGAUAGCGGGUUAUCUCAACUACUUGUUCAGUUACAGACUGAACUCAUUGUUCUACUCUUUCCCCCUUUUCACCACUGCACCUGACUAGUCUU hit 373 : 111979 111876 (rev) 28.76 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 ::CUGGUCC AAG:: G:G GUUAUC CAA+UA UUG+U+A GUUA +C G+A UC 61740 AACUGGUCCCAAGAUAGCGGGUUAUCUCAACUACUUGUUCA--GUUACAGACUGAACUCA 61797 _______.....__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCU UUC+CCC + C:C ::UGCAC UGACUAG::UU 61798 UUGUUCUacucuUUCCCCCUUUUCACCACUGCACCUGACUAGUCUU 61843 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8322,sp|AC073575.30|AC073575 Homo sapiens 12 PAC RP1-267L14 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUUCCCCGUUCUCACUAUUGCACUUGAAUAGUCUU hit 374 : 31723 31613 (rev) 58.64 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUG UC GAAG :AGUG:GUUAUC CA UU+AUUG+U+ACAGU+AGUU+CAG+++ 141996 AGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUACAGAUUgaa 142055 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CC +C:CACU: UGCACUUGA UAG::UU 142056 cUCCUUGUUCUacucuuUUCCCCGUUCUCACUAUUGCACUUGAAUAGUCUU 142106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8341,sp|AC073610.17|AC073610 Homo sapiens 12 BAC RP11-302B13 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAAGAUAGGCAUCUCAAUUGUUCACGGCCAGUUACAGAUUGAACUACUCUUUCCCCCUUCUCACUACUGCACUUGACUAGUCUU hit 375 : 46105 46013 (rev) 28.59 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 ::CUGGUC GAAG::AG: : U UCA AUUG+U+AC+G +AGUU+CAG+++ 58489 AGCUGGUCUGAAGAUAGGCA--UCUCA------AUUGUUCACGGCCAGUUACAGAUUgAA 58540 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CU UCUUUC+CCC +C: :CU::UGCACUUGACUAG::UU 58541 CUA-CUCUUUCCCCCUUCUCACUACUGCACUUGACUAGUCUU 58581 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8349,sp|AC073621.20|AC073621 Homo sapiens chromosome 17, clone CTD-3073J20, complete sequence. ----isReversed: 1 ----hitSequence: UUUAUUUUUAAACGCAGUAGCAUUUACAACUAAUUGAUCACAAGCAGUUACAGAUCUCUUUGUUCCUUCUCCACUUCCACUGCUUCACUCGACUUGCCUA hit 376 : 38921 38822 (rev) 28.06 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : : :U: AA G:AGU:G +U+ACAA+UAAUUGAU+ACA +AGUU+CAG++ UC 102128 UUUAUUUUUAAACGCAGUAG-CAUUUACAACUAAUUGAUCACAAGCAGUUACAGAUCUCU 102186 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ C:ACU:CU CACU :A: : :U 102187 UUGUUCCUUCUCCACUUCCACUGCUUCACUCGACUUGCCUA 102227 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8382,sp|AC073857.30|AC073857 Homo sapiens 12 BAC RP11-546D6 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GCUCGGCCUGGUAGUGAGUUAUCUUAAUUAAUUGUUCACAGUCACAGAUCAAACUUCUUGUUCUACUCUUUCCCCCUUCUCUACUGUACUUGACUAGUCUU hit 377 : 1849 1749 (rev) 35.89 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 G:::GG:C G G:AG G:GUUAUC AAUUAAUUG+U+ACAGU+A + ++AA U 146963 GCUCGGCCUG---GUAGUGAGUUAUCUUAAUUAAUUGUUCACAGUCACAGA-UCAAAcUU 147018 ________...__________>>>>>>>------->>>>>>>>:: 60 cUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUCU U UCCCCC :C CU:CUG ACUUG:CU:::CUU 147019 CUUGUUCUacuCUUUCCCCCUUCUCUACUGUACUUGACUAGUCUU 147063 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8417,sp|AC073912.38|AC073912 Homo sapiens 12 BAC RP11-989F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGUCCAAAAGUAGUGCGUUAUCUCAAUUGAUUGUUCAAGGUCAGUUACAGAUCAAAGUCCUCGUUCUUCCCUUCCCUCCUUCUCACUACUGCACUUGACUAGUCUU hit 378 : 206377 206486 (fwd) 63.16 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G::UGGUCC AA+G:AGUG GUUAUC CAAUU+AUUG+U+A +GU+AGUU+CAG++ 206377 GGUUGGUCCAAAAGUAGUGCGUUAUCUCAAUUGAUUGUUCAAGGUCAGUUACAGAUCaaa 206436 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU GUUCU U C++CC +C CACU:CUGCACUUGACUA::CUU 206437 gUCCUCGUUCUucccuUCCCUCCUUCUCACUACUGCACUUGACUAGUCUU 206486 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8594,sp|AC078799.28|AC078799 Homo sapiens 3 BAC RP11-499P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCGAAGGUAGUGAGUUAACUCAAUUGAUUAUGUAGUCAGUAACAGAUCGAACUUGUUCUAUUCUGUUGCCCCCCUUUUCACUAUUGCACUCGACUAGUCUA hit 379 : 5124 5017 (rev) 36.45 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 ::CUGGUCCGAAG :AGUG:GUUA C CAAUU+AUU + UA GU+AGU +CAG++ 83078 AGCUGGUCCGAAGGUAGUGAGUUAACUCAAUUGAUUAUGUA--GUCAGUAACAGAUCgAA 83135 ________........__________>>>>>>>------->>>>>>>>:: 60 cUUgUUCU........UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUCU C+CCC + :CACU: UGCACU GACUAG::U 83136 CUUGUUCUauucuguuGCCCCCCUUUUCACUAUUGCACUCGACUAGUCUA 83185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8602,sp|AC078814.23|AC078814 Homo sapiens 12 BAC RP11-848D3 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGGGCAGUGGUAUUUACAAUUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCUUUCUCCACUCCCGCUGCUUCACUUGACUAGCCUA hit 380 : 153582 153483 (rev) 68.53 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA GG:AG GG U +U+ACAAUUAAUUGAU+ACA +AGUU+CAG+++UC 37882 GGCUGGUCUGAGGGCAGUGG-UAUUUACAAUUAAUUGAUCACAACCAGUUACAGAUUUCU 37940 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUUCUCC+C+CCC CU:CU CACUUGACUAGCCU 37941 UUGUUCUUUCUCCACUCCCGCUGCUUCACUUGACUAGCCUA 37981 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8606,sp|AC078818.19|AC078818 Homo sapiens 12 BAC RP11-189H16 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGGUGGUCUGAAGGUAGUGAGUUAAUUUAAUUGAUUGUUAAUAGUCAAUUACAAAUCAAUCAAACUAUUCGUUCUACUCUUUCCCUCUUUCUCACUACUGCACUUGACUAGUCUA hit 381 : 129757 129871 (fwd) 40.25 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G: UGGUC GAAGG:AGUG:GUUA + AAUU+AUUG+U A+AGU+A UU+CA ++ 129757 GGGUGGUCUGAAGGUAGUGAGUUAAUUUAAUUGAUUGUUAAUAGUCAAUUACAAAUCaau 129816 .....__________......__________>>>>>>>------->>>>>>>>:: 58 .....UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U U GUUCU U C++C +C:CACU:CUGCACUUGACUA :CU 129817 caaacUAUUCGUUCUacucuuUCCCUCUUUCUCACUACUGCACUUGACUAGUCUA 129871 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8617,sp|AC078843.2|AC078843 Homo sapiens chromosome 7 clone RP11-59F6, complete sequence. ----isReversed: 1 ----hitSequence: GUUUGGUCCAAGUGCCGAGGUGUUUACAACUAAUUGAUCUUAACCAUUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUACUUCACUUGACUAGCCUU hit 382 : 40953 40854 (rev) 53.68 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G :UGGUCC A G :G GG U++U+ACAA+UAAUUGAU+ +A +A UU+CAG+++UC 138464 GUUUGGUCCAAGUGCCGAGG-UGUUUACAACUAAUUGAUCUUAACCAUUUACAGAUUUCU 138522 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCC C: CU CACUUGACUA: CUU 138523 UUGUUCCUUCUCCACUCCCACUACUUCACUUGACUAGCCUU 138563 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8658,sp|AC078909.7|AC078909 Homo sapiens chromosome 15, clone RP11-128A17, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUGAUUAAAACCAGUCACAGGUUUCUUCAUUUCUUCUUCACUCACACUCUUUCACUUUGACUAGUCUU hit 383 : 116521 116621 (fwd) 43.70 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCC A AGUG U++U+ACAA+UAAUUGAUUA A +AGU +CAG ++ C 116521 GGCUGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUGAUUAAAACCAGUCACAGGUU-UC 116578 __.._______________>>>>>>>-----.-->>>>>>>>:: 61 UU..gUUCUUUCUccCCCCccAcugcUgcaC.UUgACuagccUU 101 UU +UUC UUCU+C+C+C CACU U CAC UUGACUAG:CUU 116579 UUcaUUUC-UUCUUCACUCACACUCUUUCACuUUGACUAGUCUU 116621 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8683,sp|AC078961.23|AC078961 Homo sapiens 4 BAC RP11-486H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCUGAUGGUAGUGGGUUAUCAGAAUUUAUUAACACUGUUGUCACUAAAGUUGGUAUAUAACCCCCCAUUGCUAAAUUGGACUGGAUUU hit 384 : 161072 160979 (rev) 34.09 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 + C::GUC GA GGUA UGGGUUAUCA AAUU AUUA U+ U UCA+UAA 18691 GGCUAGUCUGAUGGUAGUGGGUUAUCA----GAAUUUAUUAACACUGUUGUCACUAA-AG 18745 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U U CCCCCCA UGCU +A U GAC::G +UU 18746 UUGGUAUa---UAACCCCCCAUUGCUAAAUUGGACUGGAUUU 18784 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8703,sp|AC079005.9|AC079005 Homo sapiens chromosome 17, clone RP11-153K8, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCUCCGAAGGUAGUGAGUUCUUGAUUGUUUACAGUCAGUUACUGAUGGAACUCCUUGUUCUACUUUUUCCCCCCUUCUCACUACUGCACUCGACUAGUCUU hit 385 : 155790 155894 (fwd) 53.63 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG UCCGAAGG:AGUG:GUU U+ AUUG+UUACAGU+AGUU+C G++ 155790 GGCUGCUCCGAAGGUAGUGAGUUCUUG------AUUGUUUACAGUCAGUUACUGAUGgaa 155843 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CACU:CUGCACU GA UAG:CUU 155844 cUCCUUGUUCUacuuuuUCCCCCCUUCUCACUACUGCACUCGACUAGUCUU 155894 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8708,sp|AC079033.12|AC079033 Homo sapiens 12 BAC RP11-453L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGCUUACAACUAAUUGGUCACAACCAAUUACAGAUUUAUUUGUUCAUUUUCCACUCCUACUGCUUCAGUUGACUAGCCAA hit 386 : 14665 14566 (rev) 51.69 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA G:AGU G U+ U+ACAA+UAAUUG U+ACA +A UU+CAG+++U 135459 GGCUGGUCUGAGUGCAGUGG-UGCUUACAACUAAUUGGUCACAACCAAUUACAGAUUUAU 135517 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC+UU UCC+C+CC ACU:CU CA UUGACUAGCC 135518 UUGUUCAUUUUCCACUCCUACUGCUUCAGUUGACUAGCCAA 135558 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8728,sp|AC079093.16|AC079093 Homo sapiens chromosome 8, clone RP11-265H5, complete sequence. ----isReversed: 1 ----hitSequence: GUAAACACCAAGUGCAGUGGUGUUUACAACUAAUUUAUCACAACCAGCUACUGAUUCCUUUGUUCCUUCUCCACUCCCACUGCUUUGCUUGACUAGCCUU hit 387 : 34860 34761 (rev) 42.04 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G : : CC A G:AGUGG U++U+ACAA+UAAUU AU+ACA +AG U+C G++++C 106753 GUAAACACCAAGUGCAGUGG-UGUUUACAACUAAUUUAUCACAACCAGCUACUGAUUCCU 106811 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CUUG : : CUU 106812 UUGUUCCUUCUCCACUCCCACUGCUUUGCUUGACUAGCCUU 106852 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8737,sp|AC079118.5|AC079118 Homo sapiens BAC clone RP11-260K18 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GGGUGGUCCUAGCACAGUAGUGUUUACUACUAAUUGAUGACAACCAGUUACAGAUUUCUUUUUUCCUUCUCUACUCCCACUGCGUCACUUGAUUAGCCUU hit 388 : 62239 62338 (fwd) 44.27 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG UG UCC A ::AGU:G U++U+AC A+UAAUUGAU ACA +AGUU+CAG+++UC 62239 GGGUGGUCCUAGCACAGUAG-UGUUUACUACUAAUUGAUGACAACCAGUUACAGAUUUCU 62297 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+UUC UUCUC +C+CC:ACU:: CACUUGA UA CCUU 62298 UUUUUCCUUCUCUACUCCCACUGCGUCACUUGAUUAGCCUU 62338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8744,sp|AC079135.6|AC079135 Homo sapiens BAC clone RP11-122C15 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGGUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAAUGAGUUACAGAUUAUUUUGUUCCUUCUCCAUUAUGACUGCUUCCCUUGACUAGCCUU hit 389 : 20916 20817 (rev) 51.01 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG UGGUC GA G:AGU U++U+ACAA+UAAUUGAU+ACA U AGUU+CAG+++ 67740 GGGUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAAUGAGUUACAGAUUAUU 67798 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ + ACU:CU C+CUUGACUA CCUU 67799 UUGUUCCUUCUCCAUUAUGACUGCUUCCCUUGACUAGCCUU 67839 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8816,sp|AC079305.6|AC079305 Homo sapiens BAC clone RP11-483K11 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGAAGUGAGUUACCUCAGUUGAUGGGUCACAGUCAGUUACAGAUCAACCUCCUUGUUCUACUCUUUCCCCUCAUCUGACUAUUGUAUUUCACUAGUCUU hit 390 : 89084 89194 (fwd) 46.62 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU CGAAG :AGU :GUUA+C CA UU+AU G U+ACAGU+AGUU+CAG++ 89084 GGCUGGUCCGAAGGAAGUGAGUUACCUCAGUUGAUGGGUCACAGUCAGUUACAGAUCaac 89143 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C: ACU: UG A UU ACUAG:CUU 89144 cUCCUUGUUCUacucuuUCCCCUCAUCUGACUAUUGUAUUUCACUAGUCUU 89194 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8825,sp|AC079320.9|AC079320 Homo sapiens chromosome 5, clone RP11-729C24, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCUGAAGGUAGUGAAUUAUCUCAAUUGACUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUACUCUUUUCCCCCUUCUCACUACUGCCCUUGACUAGUCUU hit 391 : 14741 14849 (fwd) 58.27 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:UC GAAGG:AGUG: UUAUC CAAUU+A U U+ACAGU+AGUU+CAG++ 14741 GGCUGAUCUGAAGGUAGUGAAUUAUCUCAAUUGACU--UCACAGUCAGUUACAGAUCgaa 14798 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCC +C:CACU:CUGC+CUUGA:UAG:CUU 14799 cUCCUUGUUCUacucuuUUCCCCCUUCUCACUACUGCCCUUGACUAGUCUU 14849 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8833,sp|AC079336.5|AC079336 Homo sapiens chromosome 17, clone RP11-466A19, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAAGGUAAUGAGUAAUCUCGAUUGUUCACAGUCAGUUACAGAUUGAGCUCCUGAUCUACUCUUUCCCUGCUUCUCACUACUGCACUUUGACUAGUCUU hit 392 : 41507 41401 (rev) 41.58 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUC GAAGG:A:UG:GU AUC +AUUG+U+ACAGU+AGUU+CAG+++ 127345 AGCUGGUCUGAAGGUAAUGAGUAAUCU----CGAUUGUUCACAGUCAGUUACAGAUUgag 127400 .__________......__________>>>>>>>-----.-->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaC.UUgACuagccUU 101 UCCU+ UCU U C++ C +C:CA:U:CUGCAC UUGACUAG::UU 127401 cUCCUG-AUCUacucuuUCCCUGCUUCUCACUACUGCACuUUGACUAGUCUU 127451 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8841,sp|AC079347.6|AC079347 Homo sapiens BAC clone RP11-352J13 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCGCUUUCAGUUACAGAUUAAGCUCCUUUUUCUACUCUUUCUCCCCUUCUCAUACUGCAUUUGACUAGUCUU hit 393 : 71456 71348 (rev) 47.76 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGG CCGAAGG:AG G:GUUAUC CAAUU+AUUG+U+ C U+AGUU+CAG+++ 25104 AGCUGG-CCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCGCUUUCAGUUACAGAUUaag 25162 .__________....__________>>>>.>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAc.ugcUgcaCUUgACuagccUU 101 UCCUU+UUCU UU ++CCCC :C C U:CUGCA UUGACUAG::UU 25163 cUCCUUUUUCUacucUUUCUCCCCUUCUCaUACUGCAUUUGACUAGUCUU 25212 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8869,sp|AC079403.3|AC079403 Homo sapiens BAC clone RP11-704A20 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUAGUAUUUGCAACUAAUUAAUUACAACUAGUUACAGUUUUCUUUGUUCCUUCUCCAGUCCCAUUGCUGGAGAAAAUUUAAUUAACCUA hit 394 : 45111 45215 (fwd) 31.61 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG+UG U GA G:A U:G U +U+ CAA+UAAUU AUUACA UAGUU+CAGU++UC 45111 GGCUGGUCUGAGUGCAGUAG-UAUUUGCAACUAAUUAAUUACAACUAGUUACAGUUUUCU 45169 _________________>>>>>>>--.....----->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUg.....caCUUgACuagccUU 101 UUGUUC UUCUCC+ +CC:A U:CUG +A UU A UA+CCU 45170 UUGUUCCUUCUCCAGUCCCAUUGCUGgagaaAAUUUAAUUAACCUA 45215 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8911,sp|AC079601.25|AC079601 Homo sapiens 12 BAC RP11-328C8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGCUUCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 395 : 31831 31732 (rev) 69.62 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG U:CGA G:AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 64371 GGCUGCUUCGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 64429 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUU:A UAGCCUU 64430 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 64470 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8983,sp|AC079835.5|AC079835 Homo sapiens BAC clone RP11-15O17 from 4, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCUGAAGGUAAUGAGUUAUCUCAACUGAUUGGUCAUGGCCAAUUACAGACAGAACUCCUUAUUUUACUUCCCCACCCCCCGACUACUGCACUUGACUAGUCAA hit 396 : 148713 148821 (fwd) 39.72 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUC GAAGG:A:UG GUUAUC CAA+U+AUUG U+A++G +A UU+CAG+ A 148713 AGCUGGUCUGAAGGUAAUGAGUUAUCUCAACUGAUUGGUCAUGGCCAAUUACAGACAgaa 148772 .__________..__________>>..>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU..UUCUccCCCCcc..AcugcUgcaCUUgACuagccUU 101 UCCUU UU U UUC+CC+CCC C A:U:CUGCACUUGACUAG:: 148773 cUCCUUAUUUUacUUCCCCACCCCCcgACUACUGCACUUGACUAGUCAA 148821 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9042,sp|AC079946.11|AC079946 Homo sapiens 3q BAC RP11-482E8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGUUUGUCUGAAGGUACUGAUUCAUCUCAACUGAUUCAUAGUCAGUUGCCGAUCAAAGUCCUUGUUCUACUCUUUCUCAGUACUGCACUUGACUAGUGUC hit 397 : 152819 152720 (rev) 31.72 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +::U GUC GAAGG:A UG:+U AUC CAA+U+AU U+A+AGU+AGUU C G++ 47970 GGUUUGUCUGAAGGUACUGAUUCAUCUCAACUGAU---UCAUAGUCAGUUGCCGAUCaaa 48026 .__________.__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU ++C +C:CA U:CUGCACUUGAC A::+U 48027 gUCCUUGUUCUa---CUCUUUCUCAGUACUGCACUUGACUAGUGUC 48069 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9075,sp|AC080038.5|AC080038 Homo sapiens chromosome 17, clone CTD-3035K23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGAUGGUGAGUUAUCUCAAUUGGUUGUUCAUAGUCAGUUACAGACCAAAGUCUUUGUUCUACUCUUUCCUCCUUUCUGACUUUACUAGUCUU hit 398 : 55484 55586 (fwd) 37.41 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU C AAG:U:G :GUUAUC CAAUU+ UUG+U+A+AGU+AGUU+CAG+ 55484 GGCUGGUCCAAAGAUGGUGAGUUAUCUCAAUUGGUUGUUCAUAGUCAGUUACAGACCaaa 55543 .__________..__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU..UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU U U+CC CC: C:G: UU ACUAG:CUU 55544 gUCUUUGUUCUacUCUUUCCUCCUUUCUGAC----UUUACUAGUCUU 55586 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9096,sp|AC080097.20|AC080097 Homo sapiens 3 NOVECTOR RP11-784F16 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCUCGUGCAGUGGUGUUUACAACUAAUUGAUCAUAACCGGUUACAGAUUUCUUUGAUCCUUUUCCACUCCCACUGCUUUAUUUGACUAGCCUU hit 399 : 21961 22060 (fwd) 59.21 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC G:AGUGG U++U+ACAA+UAAUUGAU+A+A ++GUU+CAG+++UC 21961 GGCUGGUCCUCGUGCAGUGG-UGUUUACAACUAAUUGAUCAUAACCGGUUACAGAUUUCU 22019 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG UC UU UCC+C+CCCACU:CU A UUGACUAGCCUU 22020 UUGAUCCUUUUCCACUCCCACUGCUUUAUUUGACUAGCCUU 22060 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9097,sp|AC080098.8|AC080098 Homo sapiens 3q BAC RP11-284O3 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGCUAGUUUGAGCGUAGUGAGUUAUCUCAAUUGGUUAUUCCCAGUCAGCUACAGAUGGAACUCCUUGUUGUCUUUCCCCCAUUCUCACUAGCACAUUUAGCUAGCAUU hit 400 : 19420 19527 (fwd) 33.01 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 :GCU:G : GA :AGUG:GUUAUC CAAUU+ UU +U+ CAGU+AG U+CAG++ 19420 AGCUAGUUUGAGCGUAGUGAGUUAUCUCAAUUGGUUAUUCCCAGUCAGCUACAGAUGgaa 19479 .__________...__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUU U U C+CC+ +C:CACU: CA UU: C:AGC:UU 19480 cUCCUUGUUGUcuuUCCCCCAUUCUCACUAGCACAUUUAGCUAGCAUU 19527 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9100,sp|AC080112.15|AC080112 Homo sapiens chromosome 17, clone CTD-2267D19, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGUUCCAAAACAGUAAGUUAUCUCUAUUGAUUGUUCAGUUACAGAUCAAACUCCUUGUUCUACUCUUUUCCCUCCUUCUCACUACUGCACUUGACUAGUCAA hit 401 : 32360 32464 (fwd) 30.70 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:UCC AA+: AGU::GUUAUC C AUU+AUUG+U +AGUU+CAG++ 32360 GGCUGUUCC-AAAACAGUAAGUUAUCUCUAUUGAUUGUU------CAGUUACAGAUCaaa 32412 .__________.......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++CC +C::ACU :UGCACUUGA:UAG:C 32413 cUCCUUGUUCUacucuuuUCCCUCCUUCUCACUACUGCACUUGACUAGUCAA 32464 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9130,sp|AC083799.17|AC083799 Homo sapiens 3 BAC RP11-332M2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAGUAAUGCUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCAGGCCAAACAGUUCACUUGACUAGCCUA hit 402 : 134202 134301 (fwd) 41.81 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A U: U+ U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 134202 GGCUGGUCCAAGUGCAGUAA-UGCUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 134260 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ C :A U CACUUGACUAGCCU 134261 UUGUUCCUUCUCCAGGCCAAACAGUUCACUUGACUAGCCUA 134301 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9162,sp|AC083866.2|AC083866 Homo sapiens chromosome 7 clone RP11-702D16, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGGGAGUGAGUUAUCUCAUUUGAUUGUUCACAGUCAGCUACAGAUCCAACUCCUUGUUCUACUCUUUCCCCCCUUCUCACUGCUGCACUUGACUAGACUA hit 403 : 14241 14351 (fwd) 59.51 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G CUGGUCC AAGG AGUG:GUUAUC CA UU+AUUG+U+ACAGU+AG U+CAG++ 14241 GGCUGGUCCAAAGGGAGUGAGUUAUCUCAUUUGAUUGUUCACAGUCAGCUACAGAUCcaa 14300 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CACU CUGCACUUGACUAG CU 14301 cUCCUUGUUCUacucuuUCCCCCCUUCUCACUGCUGCACUUGACUAGACUA 14351 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9235,sp|AC084198.31|AC084198 Homo sapiens 3 BAC RP11-454H13 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUAAGAUUGCAGUGGUAUUUAUAACUCAUUGGUCACAACUAGUUACAGAUUUCUUUGUUCCUUCUCCAUUCCCACUGCUUCACUUGACUAGCCAA hit 404 : 50268 50367 (fwd) 52.80 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU: GA G:AGUGG U +U+A AA+U AUUG U+ACA UAGUU+CAG+++UC 50268 GGCUGGUAAGAUUGCAGUGG-UAUUUAUAACUCAUUGGUCACAACUAGUUACAGAUUUCU 50326 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +CCCACU:CU CACUU:ACUAGCC 50327 UUGUUCCUUCUCCAUUCCCACUGCUUCACUUGACUAGCCAA 50367 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9235,sp|AC084198.31|AC084198 Homo sapiens 3 BAC RP11-454H13 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCCGAAGUUAGUUAUCUCAAUUGACUGUUCACAGUUACAGAUCGAACUCCUUGUUCUACUCUUUACCCCCUUCUCACUACUGCACUUGACUAGUGUA hit 405 : 65011 64909 (rev) 36.93 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGG:CC G:AGU::GUUAUC CAAUU+A UG+U+AC AGUU+CAG++ 129945 GGCUGGCCC----GAAGUUAGUUAUCUCAAUUGACUGUUCAC----AGUUACAGAUCgaa 129996 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C::ACU:CUGCACUUG:CUAG:+U 129997 cUCCUUGUUCUacucuuUACCCCCUUCUCACUACUGCACUUGACUAGUGUA 130047 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9249,sp|AC084253.6|AC084253 Homo sapiens chromosome 8, clone RP11-498C11, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCUCAAGUGCCGUGGUGUUCACAACUAAUUGAUCACAACCAGUUACAGAUUUGUUUCUUCUCCAUUCACACUGCUUCACUUGACCAGUCUA hit 406 : 30487 30392 (rev) 43.86 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CU:G::C A G::GUG U++UCACAA+UAAUUGAU+ACA +AGUU+CAG+++ 61206 GGCUGGCUCAAGUGCCGUGG-UGUUCACAACUAAUUGAUCACAACCAGUUACAGAUU--- 61261 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC UUCUCC+ +C CAC::CU CACUU::C:AG:CU 61262 UGUUUC-UUCUCCAUUCACACUGCUUCACUUGACCAGUCUA 61301 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9253,sp|AC084264.7|AC084264 Homo sapiens chromosome 2, clone CTB-2122H5, complete sequence. ----isReversed: 0 ----hitSequence: GGCUUGUCUGAAGAUAAUGACUUAUCUCAACUGAUUAUUCACAGUUACAGAUGAAACUCCUUGUUUUACUUUCCCCACUUUUCACUAUUACACUUGACUAGUCUU hit 407 : 118677 118781 (fwd) 41.40 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU GUC GAAG::A:UG: UUAUC CAA+U+AUU +U+AC AGUU+CAG++ 118677 GGCUUGUCUGAAGAUAAUGACUUAUCUCAACUGAUUAUUCAC----AGUUACAGAUGaaa 118732 .__________....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUU U U C+C C + :CA:U::U CACUUGAC AG:CUU 118733 cUCCUUGUUUUacuuUCCCCACUUUUCACUAUUACACUUGACUAGUCUU 118781 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9314,sp|AC084758.3|AC084758 Homo sapiens chromosome 15 clone RP11-348A14 map 15q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCCGAAGGUAGGGAGUUAUCUCAACCGAUUGUUCACAGUCAGGAGUUUGAUCUGAAACUCCUUGUUCUACUUUCUCCCCUUCUCACUACUAUGCUUGACUAGUCUU hit 408 : 55167 55056 (rev) 46.70 bits <<<<<<<<-----<<<<<<<____________________________...___...___ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAG...UUU...CAg 54 G:CUGG:CCGAAGG:AG:G:GUUAUC CAA+ +AUUG+U+ACAGU+AG UUU C G 136908 GGCUGGCCCGAAGGUAGGGAGUUAUCUCAACCGAUUGUUCACAGUCAGgagUUUgauCUG 136967 ___.__________...________.__>>>>>>>------->>>>>>>>:: 55 uAa.UCcUUgUUCU...UUCUccCC.CCccAcugcUgcaCUUgACuagccUU 101 +AA UCCUUGUUCU UUCUCCCC +C:C:CU:CU CUUG:CUAG:CUU 136968 AAAcUCCUUGUUCUacuUUCUCCCCuUCUCACUACUAUGCUUGACUAGUCUU 137019 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9323,sp|AC084794.3|AC084794 Homo sapiens chromosome 16 clone CTA-154B9, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCCAAAGGUACUGAGUUAUCUCACUGGACUGUUUGCAGUCAGUUACAGAUCCAACUCCUUGUUCUACUCUUUCCCCCGUUCUCACUACUACACUUCACUAGUUUA hit 409 : 211073 210963 (rev) 45.08 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGG: C AAGG:A UG:GUUAUC CA U +A UG+UU CAGU+AGUU+CAG++ 19438 GGCUGGCCCAAAGGUACUGAGUUAUCUCACUGGACUGUUUGCAGUCAGUUACAGAUCcaa 19497 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CC +C:CA U:CU CACUU :CUAG:+U 19498 cUCCUUGUUCUacucuuUCCCCCGUUCUCACUACUACACUUCACUAGUUUA 19548 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9330,sp|AC084824.20|AC084824 Homo sapiens 12 BAC RP11-278C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUUGUCUGAAGGUAGUUAUCUCAAUUGACUGUUCAGUCAGUUACAGAUGGAACUCCUUGUUCUACUCUUUCCCGCCUUACUACUGCACUUGACUAGUCUA hit 410 : 64148 64047 (rev) 40.85 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU GUC GAAGG:AGU UAUC CAAUU+A UG+U+A GU+AGUU+CAG++ 34089 GGCUUGUCUGAAGGUAGU----UAUCUCAAUUGACUGUUCA--GUCAGUUACAGAUGgaa 34142 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+C CC+ ACU:CUGCACUUGAC AG:CU 34143 cUCCUUGUUCUacucuUUCCCGCCUU--ACUACUGCACUUGACUAGUCUA 34190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9342,sp|AC084865.3|AC084865 Homo sapiens chromosome 7 clone RP11-437L1, complete sequence. ----isReversed: 0 ----hitSequence: UGCUGGUCCAGGUGCAGUGGUGUUUAAAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUACACGCCCACUGCUUCACUUGACUAGCUUU hit 411 : 167445 167544 (fwd) 57.34 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUGGUCC G:AGUGG U++U+A AA+UAAUUGAU+ACA +AGUU+CAG+++UC 167445 UGCUGGUCCAGGUGCAGUGG-UGUUUAAAACUAAUUGAUCACAACCAGUUACAGAUUUCU 167503 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+C CCCACU:CU CACUUGACUAGC:UU 167504 UUGUUCCUUCUACACGCCCACUGCUUCACUUGACUAGCUUU 167544 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9342,sp|AC084865.3|AC084865 Homo sapiens chromosome 7 clone RP11-437L1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAGUGUUUACAACUCUUGAUUACAGAUUUCUUUGUUCCUUCUCCAUCCCCACUGCUUCACUUGACUAGUCUU hit 412 : 174828 174743 (rev) 33.95 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUC GA G:AGUG UUA+ A U + U+ UU+CAG+++UC 39335 GGCUGGUCUGAGUGCAGUGU-UUACAA-----------CUCU---UGAUUACAGAUUUCU 39379 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ CC CACU:CU CACUUGACUAG:CUU 39380 UUGUUCCUUCUCCAUCCCCACUGCUUCACUUGACUAGUCUU 39420 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9347,sp|AC084877.18|AC084877 Homo sapiens 12 BAC RP11-158O11 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCCAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUGCGGAUUUCUUUGUUCCUUCUCCACUCCUACUCCUUCAAUUGACUAGCCUU hit 413 : 85826 85727 (rev) 56.83 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G AGU G U++U+ACAA+UAAUUGAU+ACA +AGUU C G+++UC 93387 GGCUGGUCCCAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUGCGGAUUUCU 93445 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ACU CU CA UUGACUAGCCUU 93446 UUGUUCCUUCUCCACUCCUACUCCUUCAAUUGACUAGCCUU 93486 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9349,sp|AC084879.23|AC084879 Homo sapiens 12q BAC RP11-167N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCCCAGUGAGGUUGUAUUUUACAACGAAUUGAUCACAACCAGUUAUAGAUUUCUUUGUUCCUUCUUCACUCCCGCUGCUUCAUUUGACUAGCCUA hit 414 : 138768 138668 (rev) 44.56 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUCC A G::G :G+ U+U+ACAA+ AAUUGAU+ACA +AGUU+ AG+++UC 16822 GGCUAGUCCCAGUGAGGUUGUAUUUUACAACGAAUUGAUCACAACCAGUUAUAGAUUUCU 16881 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+C+C+CC: C::CU CA UUGAC:AGCCU 16882 UUGUUCCUUCUUCACUCCCGCUGCUUCAUUUGACUAGCCUA 16922 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9361,sp|AC087073.6|AC087073 Homo sapiens BAC clone RP11-752H12 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGUGCUGGUGUCUAUAACUAAUUGAUCACGACUAGUUACAAAUGUCUUUGUUCUUUUUGCACUGUCACUGUUUCAAUUAACUAGCUUA hit 415 : 32930 33029 (fwd) 31.80 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GCUGGU C A U: UG U++++A AA+UAAUUGAU+AC+ UAGUU+CA ++ UC 32930 GGCUGGUCCAAGUGUGCUGG-UGUCUAUAACUAAUUGAUCACGACUAGUUACAAAUGUCU 32988 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUU U C+C+ CA :G U CA UU ACUAGC+U 32989 UUGUUCUUUUUGCACUGUCACUGUUUCAAUUAACUAGCUUA 33029 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9366,sp|AC087163.10|AC087163 Homo sapiens chromosome 17, clone RP11-384M20, complete sequence. ----isReversed: 0 ----hitSequence: GUCUGGUCUGAUGGUAGUAGGUUAUGAGAACUUAUUAAAUUUGGUGUCACUGAAGUUGGUAUACAGUCUCCCACUGCUAAAUUUGACUAGCUAA hit 416 : 38139 38232 (fwd) 30.40 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 + CUGGUC GA GGUAGU:GGUUAU A AA U AUUA A UU+GU UCA+U A 38139 GUCUGGUCUGAUGGUAGUAGGUUAUGA----GAACUUAUUAAAUUUGGUGUCACUGA-AG 38193 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + C+CC:ACUGCU +A UUGACUAG + 38194 UUGGUAUa---CAGUCUCCCACUGCUAAAUUUGACUAGCUAA 38232 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9393,sp|AC087245.29|AC087245 Homo sapiens 12 BAC RP11-208B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAUGCAGUGAUGUUUACAACAGACUGAUCACAACCAGUUACCGAUUUGUUUCUUCUCCACUCCCACUGCUUUCAAUAACUAGCCUU hit 417 : 37177 37082 (rev) 40.68 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU GAA G:AGUG U++U+ACAA+ +A UGAU+ACA +AGUU+C G+++ 56166 GGCUGGUCUGAAUGCAGUGA-UGUUUACAACAGACUGAUCACAACCAGUUACCGAUU--- 56221 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC UUCUCC+C+C CACU:CU + U ACUAGCCUU 56222 UGUUUC-UUCUCCACUCCCACUGCUUUCAAUAACUAGCCUU 56261 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9411,sp|AC087292.14|AC087292 Homo sapiens chromosome 17, clone RP11-810M2, complete sequence. ----isReversed: 0 ----hitSequence: AGCAAGAUCCCUGGCGGUGAUGUUUACAACUAACUGAUCACAACCAGUUACAGAUUCAUUUGUUCCUUCACUCCCACUGCCUCACUUGGCUAGCCUA hit 418 : 173378 173474 (fwd) 32.66 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC :G :C GG::GUG U++U+ACAA+UAA UGAU+ACA +AGUU+CAG++++ 173378 AGCAAGAUCCCUGGCGGUGA-UGUUUACAACUAACUGAUCACAACCAGUUACAGAUUCAU 173436 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U+C+C+C CAC::C CACUU: C: GC:U 173437 UUGUUCC---UUCACUCCCACUGCCUCACUUGGCUAGCCUA 173474 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9411,sp|AC087292.14|AC087292 Homo sapiens chromosome 17, clone RP11-810M2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGGGUGCAGUGGUGUUUAAAACUCAUCAAAACCAGUUACAGAUUUCUUUGUUCCUUCUUCACUCCCACUGCUUCACCUGACUAGCCUU hit 419 : 179820 179915 (fwd) 55.02 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCCG G:AGUGG U++U+A AA U AU+A A +AGUU+CAG+++UC 179820 GGCUGGUCCGGGUGCAGUGG-UGUUUA----AAACUCAUCAAAACCAGUUACAGAUUUCU 179874 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+C+C+CCCACU:CU CAC UGACUAGCCUU 179875 UUGUUCCUUCUUCACUCCCACUGCUUCACCUGACUAGCCUU 179915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9428,sp|AC087321.20|AC087321 Homo sapiens 12 BAC RP11-606D9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAACAUACUGAGUUACCUCAAAUGACUAUUCAAAAACAUUAACAGACAGAAUUUCUUGUCAUACUCUUUCCUCCCUUCUCACUACUGUACUUGACUAGUCUU hit 420 : 6475 6365 (rev) 46.35 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGAA ::A UG:GUUA+C CAA U+A U +U+A A +A U +CAG+ A 116536 GGCUGGUCCGAACAUACUGAGUUACCUCAAAUGACUAUUCAAAAACAUUAACAGACAgaa 116595 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CUUGU +U U CUCCC +C:CA U::UG ACUUGACUAG:CUU 116596 uUUCUUGUCAUacucuuUCCUCCCUUCUCACUACUGUACUUGACUAGUCUU 116646 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9462,sp|AC087397.10|AC087397 Homo sapiens chromosome 18, clone RP11-594P16, complete sequence. ----isReversed: 0 ----hitSequence: GUCUGGUCUGAGUGCAGUGGUGUUUACAAUUAAUUGAUCACACACAGUUACAGAUUUCUUUAUUCCUUGUCCAUUCCCAUUGCUUCACUUGACAGGCCUA hit 421 : 114231 114330 (fwd) 49.57 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G C: GUC GA G:A UGG U++U+ACAAUUAAUUGAU+ACA +AGUU+CAG+++UC 114231 GUCUGGUCUGAGUGCAGUGG-UGUUUACAAUUAAUUGAUCACACACAGUUACAGAUUUCU 114289 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC UU UCC+ +CCCA U:CU CACUUGAC :G CU 114290 UUAUUCCUUGUCCAUUCCCAUUGCUUCACUUGACAGGCCUA 114330 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9537,sp|AC087638.7|AC087638 Homo sapiens chromosome 15, clone RP11-655F8, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUUCAAGUGCAGUGAGUGGGGUUUAUAACUAACUGACCACAAUCAGUUACAGAUGUCUUAGUUCCUUCUCCACUCCCACUGCCCACUUGACUGGCCUA hit 422 : 148834 148936 (fwd) 40.32 bits <<<<<<<<-----<<<<<<<__...___________________________________ 1 ggcugGUcCGAAgguagUggGU...UAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa 57 GGC:GGU:C A G:AGUG GU ++U+A AA+UAA UGA +ACA U+AGUU+CAG++ 148834 GGCUGGUUCAAGUGCAGUGAGUgggGUUUAUAACUAACUGACCACAAUCAGUUACAGAUG 148893 ____________________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC U GUUC UUCUCC+C+C CACU:C CACUU:ACU:GCCU 148894 UCUUAGUUCCUUCUCCACUCCCACUGCC-CACUUGACUGGCCUA 148936 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9553,sp|AC087687.4|AC087687 Homo sapiens chromosome 18, clone RP11-729L2, complete sequence. ----isReversed: 1 ----hitSequence: UACUGGUCCAAAGGUAAUGAUUAACCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUCAGCUCCUUGUUCUACUCUUUACCCCCUUCUCACUAUUGUGCUUGACUAGUCAA hit 423 : 79941 79831 (rev) 44.05 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAG :A:UG:+U A+C CAAU +AUUG+U+ACAGU+AGUU+CAG+++ 47622 UACUGGUCCAAAGGUAAUGAUUAACCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUcag 47681 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CA:U: UG CUUGACUAG:: 47682 cUCCUUGUUCUacucuuUACCCCCUUCUCACUAUUGUGCUUGACUAGUCAA 47732 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9567,sp|AC087742.9|AC087742 Homo sapiens chromosome 17, clone RP11-104O19, complete sequence. ----isReversed: 1 ----hitSequence: AGCAAGAUCCCUGGCGGUGAUGUUUACAACUAACUGAUCACAACCAGUUACAGAUUCAUUUGUUCCUUCACUCCCACUGCCUCACUUGGCUAGCCUA hit 424 : 133544 133448 (rev) 32.66 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC :G :C GG::GUG U++U+ACAA+UAA UGAU+ACA +AGUU+CAG++++ 35291 AGCAAGAUCCCUGGCGGUGA-UGUUUACAACUAACUGAUCACAACCAGUUACAGAUUCAU 35349 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U+C+C+C CAC::C CACUU: C: GC:U 35350 UUGUUCC---UUCACUCCCACUGCCUCACUUGGCUAGCCUA 35387 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9567,sp|AC087742.9|AC087742 Homo sapiens chromosome 17, clone RP11-104O19, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGGGUGCAGUGGUGUUUAAAACUCAUCAAAACCAGUUACAGAUUUCUUUGUUCCUUCUUCACUCCCACUGCUUCACCUGACUAGCCUU hit 425 : 127102 127007 (rev) 55.02 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCCG G:AGUGG U++U+A AA U AU+A A +AGUU+CAG+++UC 41733 GGCUGGUCCGGGUGCAGUGG-UGUUUA----AAACUCAUCAAAACCAGUUACAGAUUUCU 41787 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+C+C+CCCACU:CU CAC UGACUAGCCUU 41788 UUGUUCCUUCUUCACUCCCACUGCUUCACCUGACUAGCCUU 41828 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9584,sp|AC087828.6|AC087828 Homo sapiens chromosome 15, clone RP11-292P13, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGCAUCAUCUUAAUUGAUUGUUCAUACUCAGUUACAGAUAAUACUCCUUGUUCUACUCUUUCCCCACUUCUCACUACUGCACUUGACUAGUCUU hit 426 : 153756 153866 (fwd) 57.67 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAGG:AGUG U AUC AAUU+AUUG+U+A+A U+AGUU+CAG++A 153756 GGCUGGUCUGAAGGUAGUGCAUCAUCUUAAUUGAUUGUUCAUACUCAGUUACAGAUAaua 153815 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C CACU:CUGCACUUGACUAG:CUU 153816 cUCCUUGUUCUacucuuUCCCCACUUCUCACUACUGCACUUGACUAGUCUU 153866 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9584,sp|AC087828.6|AC087828 Homo sapiens chromosome 15, clone RP11-292P13, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUUCAAGUACAGUGGUGUUUACAACUAAUUCAUCACAGUCACAGAUUUCUUUGUUCCUUCUCCACUUCCACUGCUUCACUUGAUUGGUCAA hit 427 : 6614 6519 (rev) 40.00 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:::G U:C A ::AGUGG U++U+ACAA+UAAUU AU+AC AGU +CAG+++UC 178711 GGUUGGUUCAAGUACAGUGG-UGUUUACAACUAAUUCAUCAC----AGUCACAGAUUUCU 178765 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ CCACU::U CACUU:A U:::C 178766 UUGUUCCUUCUCCACUUCCACUGCUUCACUUGAUUGGUCAA 178806 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9601,sp|AC087884.18|AC087884 Homo sapiens 12 BAC RP11-416A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGGAGAUAGUGAAUUGUCUUAAUUGAUUGUUGACAGUCAGUUACAGAUAGAACUUGUUCUACUCUUUCCCCUAUCCUUACUACUGCACUUGACUAGUUUU hit 428 : 12492 12599 (fwd) 44.56 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 +:CUGGUC G AG::AGU : UU UC AAUU+AUUG+U ACAGU+AGUU+CAG++A 12492 GGCUGGUCUGGAGAUAGUGAAUUGUCUUAAUUGAUUGUUGACAGUCAGUUACAGAUAgAA 12551 ________......__________>>>>>>>------->>>>>>>>:: 60 cUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUCU U C+C + CC: ACU::UGCACUUGACUAG:+UU 12552 CUUGUUCUacucuuUCCCCUAUCCUUACUACUGCACUUGACUAGUUUU 12599 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9607,sp|AC087893.15|AC087893 Homo sapiens 12 BAC RP11-423G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAAGUAGUGAGUUAUCUCAAUGGACUUUUUACAGUCAGUUACAGAUCAAACUCCAUGUACUACUCUUCCCCUCUCCCCCCACUUCUCACUACUGCACUUGAUUAUUCUU hit 429 : 6344 6462 (fwd) 45.96 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G: UG UC GAA+G:AGUG:GUUAUC CAAU +A U +UUACAGU+AGUU+CAG++ 6344 GGCUGGUCUGAAAGUAGUGAGUUAUCUCAAUGGACUUUUUACAGUCAGUUACAGAUCaaa 6403 .__________..............__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU..............UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCC UGU CU C+C C +C:CACU:CUGCACUUGA UA :CUU 6404 cUCCAUGUACUacucuuccccucucCCCCCACUUCUCACUACUGCACUUGAUUAUUCUU 6462 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9619,sp|AC089999.20|AC089999 Homo sapiens 12 BAC RP11-545P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GUCUGGUCCUAGUGCAGUGGUGUUUACAACGAAUUAAUUACAACCGGUUACAGAUUUUGUUUCUUCUUAAUUUCCACUACUCCAGUUGGACUAAAAGA hit 430 : 94154 94251 (fwd) 34.26 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +UGGUCC A G AGUGG U++U+ACAA+ AAUU AUUACA ++GUU+CAG+++ 94154 GUCUGGUCCUAGUGCAGUGG-UGUUUACAACGAAUUAAUUACAACCGGUUACAGAUU-UU 94211 _________________>>>>>>>-------.>>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUU.gACuagccUU 101 U UUC UUCU+ + + CCACU CU+CA UU GACUA+ 94212 GU-UUC-UUCUUAAUUUCCACUACUCCAGUUgGACUAAAAGA 94251 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9697,sp|AC090154.19|AC090154 Homo sapiens chromosome 8, clone RP11-705C3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUAAAGGUAGUGAGUUAUCUCAACUGACUGUUCAGUUACAGUUGGAACUGCUUAUUCUACCAUUUCUCCCCUUCUCACUACCUGCACUUGACUAGUCCA hit 431 : 34983 35088 (fwd) 33.89 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC AAGG:AGUG:GUUAUC CAA+U+A UG+U +AGUU+CAGU+ 34983 GGCUGGUCUAAAGGUAGUGAGUUAUCUCAACUGACUGUU------CAGUUACAGUUGgaa 35036 .__________.....________.__>>>>>>.>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCC.CCccAcug.cUgcaCUUgACuagccUU 101 U CUU UUCU UUCUCCCC +C:CACU: CUGCACUUGACUAG:C 35037 cUGCUUAUUCUaccauUUCUCCCCuUCUCACUAcCUGCACUUGACUAGUCCA 35088 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9780,sp|AC090419.7|AC090419 Homo sapiens chromosome 17, clone CTD-2107B16, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUAUAUUGGUGUUUACUAUUAAUUGAUCACAGCCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGAUUAGCCUU hit 432 : 96929 97028 (fwd) 60.32 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG UCC A :UA:UGG U++U+AC AUUAAUUGAU+ACAG +AGUU+CAG+++UC 96929 GGCUGGUCCAAGUAUAUUGG-UGUUUACUAUUAAUUGAUCACAGCCAGUUACAGAUUUCU 96987 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCA:UG:U CACUUGA UAGCCUU 96988 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGAUUAGCCUU 97028 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9787,sp|AC090426.1|AC090426 Homo sapiens chromosome 17 clone 205m17 map 17q21.1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGUUCCAAAACAGUAAGUUAUCUCUAUUGAUUGUUCAGUUACAGAUCAAACUCCUUGUUCUACUCUUUUCCCUCCUUCUCACUACUGCACUUGACUAGUCAA hit 433 : 48434 48538 (fwd) 30.70 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:UCC AA+: AGU::GUUAUC C AUU+AUUG+U +AGUU+CAG++ 48434 GGCUGUUCC-AAAACAGUAAGUUAUCUCUAUUGAUUGUU------CAGUUACAGAUCaaa 48486 .__________.......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++CC +C::ACU :UGCACUUGA:UAG:C 48487 cUCCUUGUUCUacucuuuUCCCUCCUUCUCACUACUGCACUUGACUAGUCAA 48538 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9803,sp|AC090469.9|AC090469 Homo sapiens chromosome 11, clone RP11-734J23, complete sequence. ----isReversed: 1 ----hitSequence: UGCUGGUCUGAGUGCAGUGGUUUCUACAAUUAAUCGAUCACAACCAGUUACAGAUUUCCUUGUUCCUUCGCCACUCCCACUGUUUCACUUGACUAGCCAA hit 434 : 47164 47065 (rev) 55.61 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUGGUC GA :AGUGG UU+++ACAAUUAAU GAU+ACA +AGUU+CAG+++UCC 168145 UGCUGGUCUGAGUGCAGUGG-UUUCUACAAUUAAUCGAUCACAACCAGUUACAGAUUUCC 168203 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUC CC+C+CCCACU: U CACUUGACUAGC: 168204 UUGUUCCUUCGCCACUCCCACUGUUUCACUUGACUAGCCAA 168244 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9827,sp|AC090527.3|AC090527 Homo sapiens chromosome 15 clone RP11-96O20 map 15q21.1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCUAAUCCCACUGCUUCAGUUGACCAGCCUA hit 435 : 71908 72007 (fwd) 61.59 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUC GA G:AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 71908 GGCUGGUCAGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 71966 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC + +CCCACU:CU CA UUGAC:AGCCU 71967 UUGUUCCUUCUCUAAUCCCACUGCUUCAGUUGACCAGCCUA 72007 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9834,sp|AC090543.12|AC090543 Homo sapiens chromosome 15, clone RP11-330L19, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAGUUGAUCACAACCAAUUACAGAUUUCUUUGUUCCAUCUCUAAUCCCAUUGCUUCACUUAACUAACCUU hit 436 : 171158 171257 (fwd) 53.43 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG+UGGU GA G:A UGG U++U+ACAA+UA UUGAU+ACA +A UU+CAG+++UC 171158 GGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAGUUGAUCACAACCAAUUACAGAUUUCU 171216 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC +UCUC + +CCCA U:CU CACUU ACUA+CCUU 171217 UUGUUCCAUCUCUAAUCCCAUUGCUUCACUUAACUAACCUU 171257 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9897,sp|AC090685.8|AC090685 Homo sapiens chromosome 17, clone RP11-252O24, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUGCAAGUGCAGUGGUGUUUACAACGAAUCGAUCACUACCAGUUACAGAUUUCUUUGUUCCUUCCCUAUUCCCAUUGAUUCACUUGACUGGCCUU hit 437 : 76376 76277 (rev) 47.19 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC:GGU C A :A UGG U++U+ACAA+ AAU GAU+AC +AGUU+CAG+++UC 94765 GGCUGGUGCAAGUGCAGUGG-UGUUUACAACGAAUCGAUCACUACCAGUUACAGAUUUCU 94823 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUC+C + +CCCA U: U CACUU ACU:GCCUU 94824 UUGUUCCUUCCCUAUUCCCAUUGAUUCACUUGACUGGCCUU 94864 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #7,sp|AC090955.3|AC090955 Homo sapiens chromosome 3 clone RP11-622A14 map 3p, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCCGAGUGCAAUGGUGUUUACAACUAAUCGAUCACAACCAGUUACAGAUAUCUUUGUUCCUUCUCCAUUCCCAUUGCUCUGCUUGACUAGCCUU hit 438 : 22798 22897 (fwd) 60.78 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG:UCCGA G:A:UGG U++U+ACAA+UAAU GAU+ACA +AGUU+CAG++AUC 22798 GGCUGAUCCGAGUGCAAUGG-UGUUUACAACUAAUCGAUCACAACCAGUUACAGAUAUCU 22856 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +CCCA:U:CU+ CUUGA:UAGCCUU 22857 UUGUUCCUUCUCCAUUCCCAUUGCUCUGCUUGACUAGCCUU 22897 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #13,sp|AC090970.3|AC090970 Homo sapiens chromosome 15 clone CTD-2650P22 map 15q21, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAGCUAAUUGAUCACAGUUACAGAUUUCUUUGUUCCAUCUCUACUCCCACUGCUUCACUUGACUAGCCUU hit 439 : 14134 14229 (fwd) 58.87 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:AGUGG U++U+ACA +UAAUUGAU+AC AGUU+CAG+++UC 14134 GGCUGGUCCAAGUGCAGUGG-UGUUUACAGCUAAUUGAUCAC----AGUUACAGAUUUCU 14188 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC +UCUC +C+CCCACU:CU CACUUGACUAGCCUU 14189 UUGUUCCAUCUCUACUCCCACUGCUUCACUUGACUAGCCUU 14229 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #14,sp|AC090971.3|AC090971 Homo sapiens chromosome 15 clone RP11-56B16 map 15q21.3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAGCUAAUUGAUCACAGUUACAGAUUUCUUUGUUCCAUCUCUACUCCCACUGCUUCACUUGACUAGCCUU hit 440 : 90324 90419 (fwd) 58.87 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:AGUGG U++U+ACA +UAAUUGAU+AC AGUU+CAG+++UC 90324 GGCUGGUCCAAGUGCAGUGG-UGUUUACAGCUAAUUGAUCAC----AGUUACAGAUUUCU 90378 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC +UCUC +C+CCCACU:CU CACUUGACUAGCCUU 90379 UUGUUCCAUCUCUACUCCCACUGCUUCACUUGACUAGCCUU 90419 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #26,sp|AC091012.8|AC091012 Homo sapiens chromosome 11, clone RP11-113A6, complete sequence. ----isReversed: 0 ----hitSequence: GGCCGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUGGAACACCUCGUUCUACUCUUUCCCGCCUUCUCACUGCUGCACUUGAACAGUCUU hit 441 : 88406 88516 (fwd) 56.95 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C:: UC GAAGGUAGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG++ 88406 GGCCGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUGgaa 88465 .__________.....________.__>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCC.CCccAcugcUgcaCUUgACuagccUU 101 CCU GUUCU UUC+C CC +C:CACUGCUGCACUUGA ::G:CUU 88466 cACCUCGUUCUacucuUUCCCGCCuUCUCACUGCUGCACUUGAACAGUCUU 88516 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #33,sp|AC091038.9|AC091038 Homo sapiens chromosome 18, clone RP11-1015N5, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGAUCUGAGUACAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACGGAAGAAACAGAUUUCUUUGUUUCUUCUUUACUCCCACUGCUUCACUUGACUAACCUU hit 442 : 93098 92990 (rev) 48.55 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 GG+UG:UC GA ::AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+C G+A 109324 GGCUGAUCUGAGUACAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACGGAAGaaa 109382 .....__________.__________>>>>>>>------->>>>>>>>:: 58 .....UCcUUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CUU++U U UUCU+ +C+CCCACU::U CACUUGA:UA+CCUU 109383 cagauUUCUUUGUUUcUUCUUUACUCCCACUGCUUCACUUGACUAACCUU 109432 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #44,sp|AC091057.6|AC091057 Homo sapiens chromosome 15, clone RP11-736I24, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAAUCAUAGUGCGGUGGUGUUUACACCUGAUUGCAACUAGUUACAGAUUUGUUUCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 443 : 85753 85662 (rev) 34.59 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU::UC A G::GUGG U++U+ACA UGAUU CA UAGUU+CAG+++ 58800 GGCUAAUCAUAGUGCGGUGG-UGUUUACAC----CUGAUUGCAACUAGUUACAGAUU--- 58851 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC UUCUCC+C+CCCAC::CU CACUUGA::AGCCUU 58852 UGUUUC-UUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 58891 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #50,sp|AC091073.3|AC091073 Homo sapiens chromosome 15 clone RP11-138E16 map 15q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUAUCUAAUUUGUUCACAGUCAGUUAUAGAUCAAUCUCUUUGUUCUGCUCUUUCCCCCCUUUUCACUACUGCACUUGACUAUAGUCUU hit 444 : 109496 109388 (rev) 45.74 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAGG:AGUG:GUUAUC A UUG+U+ACAGU+AGUU+ AG++ 84855 GGCUGGUCUGAAGGUAGUGAGUUAUCU----AAUUUGUUCACAGUCAGUUAUAGAUCaau 84910 .__________......__________>>>>>>>------->>>>>..>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACua..gccUU 101 UC UUGUUCU U C+CCC + :CACU:CUGCACUUGACUA G:CUU 84911 cUCUUUGUUCUgcucuuUCCCCCCUUUUCACUACUGCACUUGACUAuaGUCUU 84963 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #63,sp|AC091117.5|AC091117 Homo sapiens chromosome 15 clone RP11-109D20 map 15q15, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGUGCAUCAUCUUAAUUGGUUGUUCAUACUCAGUUACAGAUAAUACUCCUUGUUCUACUCUUUCCCCACUUCUCACUACUGCACUUGACUAGUCUU hit 445 : 97883 97773 (rev) 54.16 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAGG:AGUG U AUC AAUU+ UUG+U+A+A U+AGUU+CAG++A 83430 GGCUGGUCUGAAGGUAGUGCAUCAUCUUAAUUGGUUGUUCAUACUCAGUUACAGAUAaua 83489 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C CACU:CUGCACUUGACUAG:CUU 83490 cUCCUUGUUCUacucuuUCCCCACUUCUCACUACUGCACUUGACUAGUCUU 83540 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #97,sp|AC091180.20|AC091180 Homo sapiens chromosome 17, clone RP11-1079K10, complete sequence. ----isReversed: 1 ----hitSequence: GGCCAGUGCGAAUGUAGUGAGUUAUCUCAAUCUCACAGUAAGUUACAGAUUGAACUCCUUGUUCUACUCUUUCCCCACUUCUCACUACUGCACUUGAGUAGUCUU hit 446 : 123936 123832 (rev) 42.97 bits <<<<<<<<-----<<<<<<<___________.__________________________.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAU.UaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:C:: U CGAA G:AGUG:GUUAUC CAAU U+ACAGU AGUU+CAG+++ 59755 GGCCAGUGCGAAUGUAGUGAGUUAUCUCAAUc-------UCACAGUAAGUUACAGAUUga 59807 ..__________......__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C:CACU:CUGCACUU A ::G:CUU 59808 acUCCUUGUUCUacucuuUCCCCACUUCUCACUACUGCACUUGAGUAGUCUU 59859 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #113,sp|AC091231.10|AC091231 Homo sapiens chromosome 15, clone RP11-702L15, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCCAAAGGUAGUGGGUUACCUCAACUGAUUGUUCACAGUCAGUUAUAGAUUGAACUCCUUGUUCUACUUUUUUCCCCAUUCCUUACUACUGCACUUGACUAGUCUU hit 447 : 86905 87016 (fwd) 55.51 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:UCC AAGG:AGU GGUUA+C CAA+U+AUUG+U+ACAGU+AGUU+ AG+++ 86905 GGCUGAUCCAAAGGUAGUGGGUUACCUCAACUGAUUGUUCACAGUCAGUUAUAGAUUgaa 86964 .__________......__________>.>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCc.cAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CC+ +CC ACU:CUGCACUUGA:UAG:CUU 86965 cUCCUUGUUCUacuuuuUUCCCCAUUCCuUACUACUGCACUUGACUAGUCUU 87016 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #114,sp|AC091245.2|AC091245 Homo sapiens chromosome 15 clone RP11-456H13 map 15q15, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGCAUCAUCUUAAUUGAUUGUUCAUACUCAGUUACAGAUAAUACUCCUUGUUCUACUCUUUCCCCACUUCUCACUACUGCACUUGACUAGUCUU hit 448 : 108611 108721 (fwd) 57.67 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAGG:AGUG U AUC AAUU+AUUG+U+A+A U+AGUU+CAG++A 108611 GGCUGGUCUGAAGGUAGUGCAUCAUCUUAAUUGAUUGUUCAUACUCAGUUACAGAUAaua 108670 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C CACU:CUGCACUUGACUAG:CUU 108671 cUCCUUGUUCUacucuuUCCCCACUUCUCACUACUGCACUUGACUAGUCUU 108721 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #125,sp|AC091390.1|AC091390 Homo sapiens chromosome 7q22, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 449 : 52337 52238 (rev) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 67830 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 67888 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 67889 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 67929 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #153,sp|AC091551.14|AC091551 Homo sapiens chromosome 18, clone RP11-729G3, complete sequence. ----isReversed: 1 ----hitSequence: UACUGGUCCAAAGGUAAUGAUUAACCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUCAGCUCCUUGUUCUACUCUUUACCCCCUUCUCACUAUUGUGCUUGACUAGUCAA hit 450 : 7464 7354 (rev) 44.05 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAG :A:UG:+U A+C CAAU +AUUG+U+ACAGU+AGUU+CAG+++ 148748 UACUGGUCCAAAGGUAAUGAUUAACCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUcag 148807 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CA:U: UG CUUGACUAG:: 148808 cUCCUUGUUCUacucuuUACCCCCUUCUCACUAUUGUGCUUGACUAGUCAA 148858 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #181,sp|AC091633.22|AC091633 Homo sapiens 3 BAC RP11-506F8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGUCAGUGAUCUCAGUUGAUUGUUCAGUCAGUUACAGAUUGAUCUCCUUGUUCUGCUCCUUCCCCUCUUCUCACUACUGCAUUUAACUAGUCUU hit 451 : 6892 6784 (rev) 50.67 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU GAAGG:AGU :GU+AUC CA UU+AUUG+U+A GU+AGUU+CAG+++ 147005 GGCUGGUCUGAAGGUAGUCAGUGAUCUCAGUUGAUUGUUCA--GUCAGUUACAGAUUgau 147062 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C: ACU:CUGCA UU ACUAG:CUU 147063 cUCCUUGUUCUgcuccuUCCCCUCUUCUCACUACUGCAUUUAACUAGUCUU 147113 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #209,sp|AC091748.3|AC091748 Homo sapiens chromosome 15 clone RP11-99L18 map 15q21.3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGCAGUGAGUUAUCUCACUUUGAUUGUUCACAGUCAGUUACAGAUAAAACACCUUGUUCUCUUUCCCUACUUCUUGCUACUGUACUUGACUAAUCUU hit 452 : 115231 115339 (fwd) 51.52 bits <<<<<<<<-----<<<<<<<___________.__________________________.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAU.UaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:+UGGUC GAAGG AG :GUUAUC CA U U+AUUG+U+ACAGU+AGUU+CAG++A 115231 GGCUGGUCUGAAGGCAGUGAGUUAUCUCACUuUGAUUGUUCACAGUCAGUUACAGAUAaa 115290 ..__________...__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CCUUGUUCU U C++ C +C: CU CUG ACUUGACUA+:CUU 115291 acACCUUGUUCUcuuUCCCUACUUCUUGCUACUGUACUUGACUAAUCUU 115339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #225,sp|AC091807.3|AC091807 Homo sapiens chromosome X clone RP6-186E3 map Xp11.4 complete sequence. ----isReversed: 0 ----hitSequence: CACAGUCCUGAGUGUGGUGGUGUUUACAACUAAUCGAUCACAACCAGUUACAGAUUCCUUUGUUCUGUCUCCACUCUCACUGCUUCACUUGACUAGCUAA hit 453 : 171512 171611 (fwd) 38.88 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :C G::C GA GU:GUG U++U+ACAA+UAAU GAU+ACA +AGUU+CAG++++C 171512 CACAGUCCUGAGUGUGGUGG-UGUUUACAACUAAUCGAUCACAACCAGUUACAGAUUCCU 171570 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCU UCUCC+C+C CAC:GCU CACUUG::U G: 171571 UUGUUCUGUCUCCACUCUCACUGCUUCACUUGACUAGCUAA 171611 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #274,sp|AC091878.2|AC091878 Homo sapiens chromosome 5 clone CTD-3065A13, complete sequence. ----isReversed: 1 ----hitSequence: GACUGGCCUGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCAGUCAGUUACAGAUUGAACUCCUGGUUCUACUCUUUCCCUCCUUCUCACUACUGCACUUGACUAGCCCU hit 454 : 5784 5676 (rev) 55.78 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG:C GAAGG:AGUG:GUUAUC CAAUU+AUU +U+A GU+AGUU+CAG+++ 126661 GACUGGCCUGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCA--GUCAGUUACAGAUUgaa 126718 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+GUUCU U C++CC +C:CACU:CUGCACUUG:CUAG:C U 126719 cUCCUGGUUCUacucuuUCCCUCCUUCUCACUACUGCACUUGACUAGCCCU 126769 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #321,sp|AC091934.2|AC091934 Homo sapiens chromosome 5 clone RP11-31J6, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUUAUCACAACAGGUUACAGAUUGCUUUCUUCCUUCUCCACUCAAACUGCUUCACUUGACUAGCCUU hit 455 : 106464 106365 (rev) 54.67 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:AGU U++U+ACAA+UAAUU AU+ACA +GUU+CAG+++ C 26369 GGCUGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUUAUCACAACAGGUUACAGAUUGCU 26427 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC UUCUCC+C+C ACU:CU CACUUGACUAGCCUU 26428 UUCUUCCUUCUCCACUCAAACUGCUUCACUUGACUAGCCUU 26468 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #471,sp|AC092137.3|AC092137 Homo sapiens chromosome 16 clone RP11-344H15, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCCAAGCACAGUGGUGUUCACAACGAAUUGAUCACAGCCAGGUAGAAUUCUUCAUUCUUUCUCCAGUUCCACUGCUUUGCUUGACCAGCCUU hit 456 : 112401 112498 (fwd) 38.09 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GUCC A ::AGUGG U++UCACAA+ AAUUGAU+ACAG +AG U+ G+A+UC 112401 AGCUGGUCCAAGCACAGUGG-UGUUCACAACGAAUUGAUCACAGCCAGGUA--GAAUUCU 112457 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UUCUUUCUCC+ + CCACU::U CUUGAC:AGC:UU 112458 UCAUUCUUUCUCCAGUUCCACUGCUUUGCUUGACCAGCCUU 112498 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #508,sp|AC092184.7|AC092184 Homo sapiens 12 BAC RP11-438L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGAUCCAAAGGUAGCAAGUUACCUCAAUUGACUGUUCACAGUUGCAGAUGAAACUCCUUGUUCUAUUCUUUCCCUACCUUCCCACUGCUGCACUUGACUAGUCUU hit 457 : 55360 55253 (rev) 39.54 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:UCC AAGGUAG:: GUUA+C CAAUU+A UG+U+AC AGUU CAG++ 15773 GGCUGAUCCAAAGGUAGCAAGUUACCUCAAUUGACUGUUCAC----AGUUGCAGAUGaaa 15828 .__________.......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU CU CC +C ::CUGCUGCACUUGA:UAG:CUU 15829 cUCCUUGUUCUauucuuuCCCUACCUUCCCACUGCUGCACUUGACUAGUCUU 15880 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #584,sp|AC092355.2|AC092355 Homo sapiens chromosome 7 clone RP11-310D24, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAGAUGGAGUGAGUUAUCUCAAUUGAUUGUUCACAAGCAGUUACUGAUGGAACUGCUGGUUCUGUUCUUUUCCCACUUCUCACUACUGCAUUUGUCUAGUUAA hit 458 : 35788 35678 (rev) 46.72 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGG CC A G AGUG:GUUAUC CAAUU+AUUG+U+ACA +AGUU+C G++ 56005 GGCUGGUCCAGAUGGAGUGAGUUAUCUCAAUUGAUUGUUCACAAGCAGUUACUGAUGgaa 56064 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CU+GUUCU UUC+C C +C:CACU CUGCA UUG CUAG:+ 56065 cUGCUGGUUCUguucuuUUCCCACUUCUCACUACUGCAUUUGUCUAGUUAA 56115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #594,sp|AC092372.3|AC092372 Homo sapiens chromosome 5 clone RP11-58M12, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGGUUGUUCAGUCAGGUCUAGAUUGAACUCUUGUUCUACUCUUUCCCUCCUUCUCACUCCUGCACUUGACUAGUCUU hit 459 : 92880 92773 (rev) 46.35 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAGG:AGUG:GUUAUC CAAUU+ UUG+U+A GU+AG U AG+++ 8341 AGCUGGUCCAAAGGUAGUGAGUUAUCUCAAUUGGUUGUUCA--GUCAGGUCUAGAUUgaa 8398 __________......__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + CUUGUUCU U C++CC +C:CACU:CUGCACUUGACUAG::UU 8399 CUCUUGUUCUacucuuUCCCUCCUUCUCACUCCUGCACUUGACUAGUCUU 8448 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #606,sp|AC092391.2|AC092391 Homo sapiens chromosome 1 clone RP1-86A18, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAAUGCAGUGGUGUUUACAGCUAAUUGACCACAACCAGUAACAAAUUUCUUUGUUCUUUCUCCACUCCCACUGCGUCACUUGACUAGAAAA hit 460 : 25183 25084 (rev) 48.54 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 CUGGUCC AA G:AGUGG U++U+ACA +UAAUUGA +ACA +AGU +CA +++UC 64993 GGCUGGUCCAAAUGCAGUGG-UGUUUACAGCUAAUUGACCACAACCAGUAACAAAUUUCU 65051 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUUCUCC+C+CCCACU:C CACUUGACUAG 65052 UUGUUCUUUCUCCACUCCCACUGCGUCACUUGACUAGAAAA 65092 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #627,sp|AC092439.4|AC092439 Homo sapiens BAC clone RP11-385C9 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAAGGUAGUGAGUUAUAUCGAUUGUUCAGUUACAGGUCUAACUCCUUAUUCUACUCUUUCCUCCCUUCUCACUACUGCAUUUGACUAAUCUU hit 461 : 18460 18360 (rev) 39.74 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:+UGGUCCGAAGG:AGUG:GUUAU C A UU + U+AGUU+CAG + 17091 GGCUGGUCCGAAGGUAGUGAGUUAUAUCGA--------UUGU--UCAGUUACAGGUCuaa 17140 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU UUCU U CUCCC +C:CACU:CUGCA UUGACUA+:CUU 17141 cUCCUUAUUCUacucuuUCCUCCCUUCUCACUACUGCAUUUGACUAAUCUU 17191 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #715,sp|AC092596.3|AC092596 Homo sapiens BAC clone RP11-100J5 from 4, complete sequence. ----isReversed: 0 ----hitSequence: AGCUAGUCCGAGUGCAGUGGUGAUUACAACUGAUUGAUCACAACCAGUUACAGAUAUCUUUGUUCCUUCUUCACUCUCACCACUUCAUUUGACUAGUCUU hit 462 : 24696 24795 (fwd) 58.03 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 ::CU:GUCCGA G GUG U+AU+ACAA+U+AUUGAU+ACA +AGUU+CAG++AUC 24696 AGCUAGUCCGAGUGCAGUGG-UGAUUACAACUGAUUGAUCACAACCAGUUACAGAUAUCU 24754 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+C+C+C CAC CU CA UUGAC:AG::UU 24755 UUGUUCCUUCUUCACUCUCACCACUUCAUUUGACUAGUCUU 24795 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #729,sp|AC092610.1|AC092610 Homo sapiens BAC clone RP11-160E17 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAGUGUAUUGGUGUUUAGAACUAAUUCAUCACAACCAGUUACAGAUUUUGUUGUUUCUUCUCCACUCGCAUUGCUUCACUUGACUAGCCUU hit 463 : 66446 66347 (rev) 58.66 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCCGA GUA:UG U++U+A AA+UAAUU AU+ACA +AGUU+CAG+++U 95573 GGCUGGUCCGAGUGUAUUGG-UGUUUAGAACUAAUUCAUCACAACCAGUUACAGAUUUUG 95631 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUCC+C+C CA:UGCU CACUUGACUAGCCUU 95632 UUGUUUCUUCUCCACUCGCAUUGCUUCACUUGACUAGCCUU 95672 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #791,sp|AC092672.3|AC092672 Homo sapiens BAC clone RP11-603F24 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUAUACAACUAAUUGAUUACAACUAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACCUGACUAGCUUA hit 464 : 23860 23761 (rev) 61.52 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GCUGGUC GA G:AGUGG U++ +ACAA+UAAUUGAUUACA UAGUU+CAG+++UC 56662 GGCUGGUCUGAGUGCAGUGG-UGUAUACAACUAAUUGAUUACAACUAGUUACAGAUUUCU 56720 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CAC UGACUAGC+U 56721 UUGUUCCUUCUCCACUCCCACUGCUUCACCUGACUAGCUUA 56761 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #818,sp|AC092705.3|AC092705 Homo sapiens chromosome 18, clone RP11-886H22, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGUCUGAAGGUAGUGAGUUAUUUCAAUGGACUGUUCACAGUCUGUUACAGAUCGAACUCCUUGUUCUAUUCCUUCCCCUGUCUUACUGCUGCACUUGACUUGUCAA hit 465 : 92433 92542 (fwd) 51.83 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:: GGUC GAAGGUAGU :GUUAU+ CAAU +A UG+U+ACAGU+ GUU+CAG++ 92433 GGUUGGUCUGAAGGUAGUGAGUUAUUUCAAUGGACUGUUCACAGUCUGUUACAGAUCgaa 92492 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CC +C: ACUGCUGCACUUGACU ::C 92493 cUCCUUGUUCUauuccUUCCCCUGUCUUACUGCUGCACUUGACUUGUCAA 92542 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #862,sp|AC092802.2|AC092802 Homo sapiens chromosome 1 clone RP11-57H12, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCUGAAGGUAGUGAGUUGUCUCCAUUGAUUGUUCACAGUUACAAAUGGAACUCCUUGAUCUACUCUUUCCCUCCUCCUCUUGACUAGUCUU hit 466 : 531 435 (rev) 36.44 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU:GUC GAAGG:AG G:GUU UC C AUU+AUUG+U+AC AGUU+CA ++ 162801 GGCUAGUCUGAAGGUAGUGAGUUGUCUCCAUUGAUUGUUCAC----AGUUACAAAUGgaa 162856 .____________________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UC U C C+ :C CU:CU+C CUUGAC:AG:CUU 162857 cUCCUUGAUC----UACUCUUUCCCUCCUCCUCUUGACUAGUCUU 162897 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #893,sp|AC092836.4|AC092836 Homo sapiens BAC clone RP11-50B16 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUUGAUGGUAGUGGGCUAUCAGAACUUAUUAACAUUAGUGUCAUUGAAGUUGGUAUACAACACCCCACUGCUAAAUUUGACUGGCUUG hit 467 : 162849 162756 (rev) 35.54 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGU: GA GGUAGUGGG UAUCA AA U AUUA UUAGU UCA U A 2920 GGCUGGUUUGAUGGUAGUGGGCUAUCA----GAACUUAUUAACAUUAGUGUCAUUGA-AG 2974 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + C CCCCACUGCU +A UU:ACU:GC+U 2975 UUGGUAUa---CAACACCCCACUGCUAAAUUUGACUGGCUUG 3013 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #914,sp|AC092868.2|AC092868 Homo sapiens chromosome 15 clone RP11-356M20 map 15q21.3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGCAGUGAGUUAUCUCACUUUGAUUGUUCACAGUCAGUUACAGAUAAAACACCUUGUUCUCUUUCCCUACUUCUUGCUACUGUACUUGACUAAUCUU hit 468 : 143552 143660 (fwd) 51.52 bits <<<<<<<<-----<<<<<<<___________.__________________________.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAU.UaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:+UGGUC GAAGG AG :GUUAUC CA U U+AUUG+U+ACAGU+AGUU+CAG++A 143552 GGCUGGUCUGAAGGCAGUGAGUUAUCUCACUuUGAUUGUUCACAGUCAGUUACAGAUAaa 143611 ..__________...__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CCUUGUUCU U C++ C +C: CU CUG ACUUGACUA+:CUU 143612 acACCUUGUUCUcuuUCCCUACUUCUUGCUACUGUACUUGACUAAUCUU 143660 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #924,sp|AC092897.6|AC092897 Homo sapiens 3 BAC RP11-292P2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUUGUCUGAAGUCAGUAGUGUCUACAAUUAAUUGAUCACAACCAGUUACAGAUUUCUGUGUUCCUUCUCCAUUCCCACUGCUUCACUUGACUAGCCUU hit 469 : 69866 69965 (fwd) 59.90 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU GUC GAAG::AGU:G U++++ACAAUUAAUUGAU+ACA +AGUU+CAG+++UC 69866 GGCUUGUCUGAAGUCAGUAG-UGUCUACAAUUAAUUGAUCACAACCAGUUACAGAUUUCU 69924 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UGUUC UUCUCC+ +CC:ACU::U CACUUGAC AGCCUU 69925 GUGUUCCUUCUCCAUUCCCACUGCUUCACUUGACUAGCCUU 69965 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #933,sp|AC092909.6|AC092909 Homo sapiens 3q BAC RP11-620O17 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUUGAAGUGCAAGGGUGUUUACAACUAAUUUACCACAACCAGUUACAGAUUCUUUGUUCCUUCCCCACUCCCAAUGCUCCACUUGACUAGCAAA hit 470 : 132138 132040 (rev) 45.03 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUGGU: A G:A::GG U++U+ACAA+UAAUU A +ACA +AGUU+CAG+++ C 33452 AGCUGGUUGAAGUGCAAGGG-UGUUUACAACUAAUUUACCACAACCAGUUACAGAUU-CU 33509 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUC+CC+C+CCC::U:CU+CACUU:ACUAGC: 33510 UUGUUCCUUCCCCACUCCCAAUGCUCCACUUGACUAGCAAA 33550 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1017,sp|AC093024.7|AC093024 Homo sapiens 12 BAC RP11-12L19 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUAUUCCGAAGGUAGUGAGUGACCUCAAUUGAUUGUUCGCAGUCAAAGAUUGAAAUCCUUAUUCUCCUCUUUUCCCCCUUUCACUACUGCACUUGACUAGUCUU hit 471 : 11537 11642 (fwd) 54.70 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CU::UCCGAAGG:AGUG:GU+A+C CAAUU+AUUG+U+ CAGU+A + G+AAUCC 11537 GGCUAUUCCGAAGGUAGUGAGUGACCUCAAUUGAUUGUUCGCAGUCAAAGAUUGAAAUCC 11596 _______.....__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUCU UU +CCCC+ :CACU:CUGCACUUGA::AG:CUU 11597 UUAUUCUccucuUUUCCCCCUUUCACUACUGCACUUGACUAGUCUU 11642 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1084,sp|AC093116.2|AC093116 Homo sapiens chromosome 3 clone RP11-370K13, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAGAGGUAGUGAGUUAUCUUGAUUGUUCAGUUACAGAUCAAACUCCAUGUUCUACUCUUUACCCCCUUCUUACUUCUACACUUGACUAGUCAA hit 472 : 174391 174491 (fwd) 30.80 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCC AGG+AGU :GUUAUC U+AUUG+U +AGUU+CAG++ 174391 GGCUGGUCCAGAGGUAGUGAGUUAUCU----UGAUUGUU------CAGUUACAGAUCaaa 174440 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCC UGUUCU U C+CCC +C: ACU+CU CACUUGACUAG:C 174441 cUCCAUGUUCUacucuuUACCCCCUUCUUACUUCUACACUUGACUAGUCAA 174491 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1108,sp|AC093162.5|AC093162 Homo sapiens BAC clone RP11-746I5 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAUGGUAUUGGGUUCUCAGAACUUACUAACAUUAGUAUCACUACACUUUGUAUUAAUAUAUAACACCCCAUUGCUAAAUUUGAUUGUCUUU hit 473 : 72543 72444 (rev) 32.40 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G :G UC GA GGUA:UGGGUU UCA AA U A UA UUAGU UCA+UA C 16659 AGCUGGUCUGAUGGUAUUGGGUUCUCA----GAACUUACUAACAUUAGUAUCACUAC-AC 16713 _______....__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU++U+U +U U C CCCCA:UGCU +A UUGA U: C:UU 16714 UUUGUAUuaauAUAUAACACCCCAUUGCUAAAUUUGAUUGUCUUU 16758 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1117,sp|AC093171.3|AC093171 Homo sapiens BAC clone RP11-742A14 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAGUGGUAGUGGAUUAUCAGAACUUAUUAAUAUUAGUGUCACUAAAGUUGGUAUACAACCCCUGACUGCUAAAUUUAACUGGCUUU hit 474 : 43946 43853 (rev) 30.32 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGU C GGUAGU UUAUCA AA U AUUA UUAGU UCA+UAA 73391 GGCUGGUCCAGUGGUAGUGGAUUAUCA----GAACUUAUUAAUAUUAGUGUCACUAA-AG 73445 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCC ACUGCU +A UU ACU:GC+UU 73446 UUGGUAUa---CAACCCCUGACUGCUAAAUUUAACUGGCUUU 73484 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1170,sp|AC093270.3|AC093270 Homo sapiens chromosome 5 clone RP11-342F17, complete sequence. ----isReversed: 0 ----hitSequence: GGUCUCUCUUGUAAACAGUGAUGUUUACAAGUAAUUGAUCACAACCUAUUACAGAUUUCUUUGUUCCUUCUCCACUCCCCUGCUUCACUUGACUAGCCUA hit 475 : 15144 15243 (fwd) 29.84 bits <<<<<<<<-.----<<<<<<<_______________________________________ 1 ggcugGUcC.GAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUC 59 GG:: UC G A+::AG G U++U+ACAA UAAUUGAU+ACA + UU+CAG+++UC 15144 GGUCUCUCUuGUAAACAGUGA-UGUUUACAAGUAAUUGAUCACAACCUAUUACAGAUUUC 15202 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C C CU::U CACUUGA ::CCU 15203 UUUGUUCCUUCUCCACUC-CCCUGCUUCACUUGACUAGCCUA 15243 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1170,sp|AC093270.3|AC093270 Homo sapiens chromosome 5 clone RP11-342F17, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGCCCAAGUGCAGUGGUGUCUACAACAAAUUGAUCACAACCAGUGGCAGAUUUCUUUGUUCCUUCUCUACUUCCAUUGCUUCACUUGACUAGCCUU hit 476 : 43137 43038 (rev) 47.46 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:G:CC A G:A UGG U++++ACAA+ AAUUGAU+ACA +AGU CAG+++UC 141449 GGCUAGCCCAAGUGCAGUGG-UGUCUACAACAAAUUGAUCACAACCAGUGGCAGAUUUCU 141507 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC +C+ CCA U:CU CACUUG:C:AGCCUU 141508 UUGUUCCUUCUCUACUUCCAUUGCUUCACUUGACUAGCCUU 141548 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1326,sp|AC093577.2|AC093577 Homo sapiens chromosome 1 clone RP11-430H15, complete sequence. ----isReversed: 0 ----hitSequence: GUCAUGGCUAUAAACAGUGGUGUUUACAAUGAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUACCACUGCUUUACUUGACUAGCCUU hit 477 : 101401 101500 (fwd) 43.08 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G C G:C A+::AGUGG U++U+ACAAU AAUUGAU+ACA +AGUU+CAG+++UC 101401 GUCAUGGCUAUAAACAGUGG-UGUUUACAAUGAAUUGAUCACAACCAGUUACAGAUUUCU 101459 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ CCACU::U ACUUG:C G CUU 101460 UUGUUCCUUCUCCACUACCACUGCUUUACUUGACUAGCCUU 101500 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1413,sp|AC093700.4|AC093700 Homo sapiens BAC clone RP11-815N9 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCUGAAGGUGAUGAGUUAUGUCAACUGAUUGUUCAUAGUCAAACUCCUUGUUCUACUCUUUCUCCUCUUCUCACUACUGCACUUGACUAGUCUU hit 478 : 165466 165367 (rev) 38.40 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CU:GUC GAAGG:::UG:GUUAU CAA+U+AUUG+U+A+AGU+A A UCC 7314 GGCUAGUCUGAAGGUGAUGAGUUAUGUCAACUGAUUGUUCAUAGUCAA-------ACUCC 7366 _______.....______.____>>>>>>>------->>>>>>>>:: 61 UUgUUCU.....UUCUcc.CCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCU UUCUCC C +C:CA:::CUGCACUUGAC:AG:CUU 7367 UUGUUCUacucuUUCUCCuCUUCUCACUACUGCACUUGACUAGUCUU 7413 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1442,sp|AC093743.2|AC093743 Homo sapiens BAC clone RP11-24N19 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 479 : 2404 2503 (fwd) 76.49 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCCGA G:AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 2404 GGCUGGUCCGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 2462 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUGACUAGCCUU 2463 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 2503 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1442,sp|AC093743.2|AC093743 Homo sapiens BAC clone RP11-24N19 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUACUCUUUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU hit 480 : 5897 5787 (rev) 76.40 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGAAGG:AGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG++ 70575 GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUCgaa 70634 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CACU:CUGCACUUGACUAG:CUU 70635 cUCCUUGUUCUacucuuUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU 70685 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1516,sp|AC093818.3|AC093818 Homo sapiens BAC clone RP11-366L15 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCGAAUGCAGUGGUAUUUACAACUAAUUGAUCACAACCGGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUAACUUGACCAGCCUU hit 481 : 6798 6699 (rev) 69.55 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GUCCGAA G:AGUGG U +U+ACAA+UAAUUGAU+ACA ++GUU+CAG+++UC 39527 AGCUGGUCCGAAUGCAGUGG-UAUUUACAACUAAUUGAUCACAACCGGUUACAGAUUUCU 39585 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU +ACUUGAC:AGC:UU 39586 UUGUUCCUUCUCCACUCCCACUGCUUAACUUGACCAGCCUU 39626 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1564,sp|AC093867.3|AC093867 Homo sapiens BAC clone RP11-587P6 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCCAAGUGCAGUGAUGUUUACAACCAAUUGAUCACAAUCAUUUAACAGAUUUCUGUGUUCCUUCUCAUUCCCACUGCUUCACUUGACUAGCCUU hit 482 : 52988 52889 (rev) 48.31 bits <<<<<<<<-----<<<<<<<_______________________________.________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUU.CAguAaUC 59 GGCU:GUCC A G:AGUG U++U+ACAA+ AAUUGAU+ACA U+A UU+ CAG+++UC 22177 GGCUAGUCCAAGUGCAGUGA-UGUUUACAACCAAUUGAUCACAAUCAUUUAaCAGAUUUC 22235 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UGUUC UUCUC + +C CACU:CU CACUUGAC:AGCCUU 22236 UGUGUUCCUUCUC-AUUCCCACUGCUUCACUUGACUAGCCUU 22276 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1591,sp|AC093895.3|AC093895 Homo sapiens BAC clone RP11-716M23 from 4, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGAUCUGAGUGCAAUGGUGUUUACAACUGAUUGAUCACAACAAGUUACAGAUGUCUUUGUUCCUUCUCCAUUCCCACUGCUUCUCUUGACUAGCCUU hit 483 : 146743 146644 (rev) 53.96 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUG:UC GA G:A:UGG U++U+ACAA+U+AUUGAU+ACA AGUU+CAG++ UC 24393 AGCUGAUCUGAGUGCAAUGG-UGUUUACAACUGAUUGAUCACAACAAGUUACAGAUGUCU 24451 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +CCCA:U:CU C CUUGA:UAGC:UU 24452 UUGUUCCUUCUCCAUUCCCACUGCUUCUCUUGACUAGCCUU 24492 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1627,sp|AC094080.4|AC094080 Homo sapiens chromosome 5 clone CTB-77K22, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGCUCCGAGUGCAGUGGUGUUUACAACUAAUGCAUCACAACCAGUUACAGAAUUCUUUAUCCCUUCUCCAUGCCACUGCUUUCCUUGGCCAGCCUU hit 484 : 104198 104100 (rev) 46.03 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU: CCGA G:AGUG GU++U+ACAA+UAAU AU+ACA +AGUU+CAG+A+UC 14307 GGCUGCUCCGAGUGCAGUG-GUGUUUACAACUAAUGCAUCACAACCAGUUACAGAAUUCU 14365 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU U C UUCUCC+ C CACU:CU +CUUG :AGCCUU 14366 UUAUCCCUUCUCCAUGC-CACUGCUUUCCUUGGCCAGCCUU 14405 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1652,sp|AC095033.2|AC095033 Homo sapiens chromosome 1 clone RP11-313A24, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCUGAAGGUAGUGAGUUGUCUCCAUUGAUUGUUCACAGUUACAAAUGGAACUCCUUGAUCUACUCUUUCCCUCCUCCUCUUGACUAGUCUU hit 485 : 84987 84891 (rev) 36.44 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU:GUC GAAGG:AG G:GUU UC C AUU+AUUG+U+AC AGUU+CA ++ 72346 GGCUAGUCUGAAGGUAGUGAGUUGUCUCCAUUGAUUGUUCAC----AGUUACAAAUGgaa 72401 .____________________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UC U C C+ :C CU:CU+C CUUGAC:AG:CUU 72402 cUCCUUGAUC----UACUCUUUCCCUCCUCCUCUUGACUAGUCUU 72442 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1653,sp|AC095034.2|AC095034 Homo sapiens chromosome 1 clone RP11-545E24, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUCAGUUAUCUCGAUUGUUCACAGUCAGUUACAGAUAGAACCCUUGUUCUACUCUUUCCCCCUUCUCACUACUGCAGUUGACUAGCCUU hit 486 : 27860 27964 (fwd) 59.83 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 GGCUGGUC GAAGG:AGU :GUUAUC +AUUG+U+ACAGU+AGUU+CAG++A 27860 GGCUGGUCUGAAGGUAGUCAGUUAUCU----CGAUUGUUCACAGUCAGUUACAGAUAgaa 27915 __________.....__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +CCUUGUUCU UUC+CCC +C: ACU:CUGCA UUGACUAGCCUU 27916 CCCUUGUUCUacucuUUCCCCCUUCUCACUACUGCAGUUGACUAGCCUU 27964 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1662,sp|AC095043.3|AC095043 Homo sapiens BAC clone RP11-124A7 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCCAUACAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGACUUCUUUGUUUCUUCUCCACUCCCACUGCUUCACUUGACUAGCCCU hit 487 : 75215 75117 (rev) 57.94 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A ::AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+ +UC 102823 GGCUGGUCCCAU-ACAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGACUUCU 102880 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUCC+C+CCCACU::U CACUUGACUAGCC U 102881 UUGUUUCUUCUCCACUCCCACUGCUUCACUUGACUAGCCCU 102921 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1719,sp|AC096551.1|AC096551 Homo sapiens BAC clone RP11-22K23 from 7, complete sequence. ----isReversed: 1 ----hitSequence: UGCUGGUCCAAGCGCGGUAGUGUUUACAACUAAUUAAUCACAAUCAGUUACAGGUUUCUUUGGUCAUUCUCCACUCCCACUGCUUCACUUGACUAGCUUA hit 488 : 18531 18432 (rev) 55.68 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUGGUCC A G::GU:G U++U+ACAA+UAAUU AU+ACA U+AGUU+CAG ++UC 131126 UGCUGGUCCAAGCGCGGUAG-UGUUUACAACUAAUUAAUCACAAUCAGUUACAGGUUUCU 131184 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+UC+UUCUCC+C+CC:AC::CU CACUUGACUAGC:U 131185 UUGGUCAUUCUCCACUCCCACUGCUUCACUUGACUAGCUUA 131225 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1755,sp|AC096588.1|AC096588 Homo sapiens BAC clone RP11-725D20 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCCAAAGGUUGGAAUUUAUAUCAAUUGAUUGUUCACAGUCAGUUACAGACCAAACUUCUUGUUCUAUUCUUUUCCCUCUUCUUACUAUUGCACUUGAUUAGACUU hit 489 : 13389 13499 (fwd) 40.88 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G CUG :CC AAG :+G:::+UUAU CAAUU+AUUG+U+ACAGU+AGUU+CAG+ 13389 GGCUGGGCCAAAGGUUGGAAUUUAUAUCAAUUGAUUGUUCACAGUCAGUUACAGACCaaa 13448 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CUUGUUCU UUC+C C +C:::C+: UGCACUUG: UAG CUU 13449 cUUCUUGUUCUauucuuUUCCCUCUUCUUACUAUUGCACUUGAUUAGACUU 13499 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1761,sp|AC096632.3|AC096632 Homo sapiens chromosome 1 clone RP11-38O14, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCUGAGGGCAGUGGUGUUUACAACUGUUGACCACAAUCAGUUACAGAUUUCUUUCUUCUUGCUCCACACCUGCUGCUUCAUGUGAUUAGUCUU hit 490 : 24134 24036 (rev) 34.42 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CU: UC GA GG:AG G U++U+ACAA+U+ UUGA +ACA U+AGUU+CAG+++UC 135406 GGCUAGUCUGAGGGCAGUGG-UGUUUACAACUG-UUGACCACAAUCAGUUACAGAUUUCU 135463 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUCUU CUCC+C CC CU:CU CA UGA :AG:CUU 135464 UUCUUCUUGCUCCACACCUGCUGCUUCAUGUGAUUAGUCUU 135504 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1786,sp|AC096657.1|AC096657 Homo sapiens BAC clone RP11-25L17 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGAAGUGAGUUACCUCAGUUGAUGGGUCACAGUCAGUUACAGAUCAACCUCCUUGUUCUACUCUUUCCCCUCAUCUGACUAUUGUAUUUCACUAGUCUU hit 491 : 87492 87602 (fwd) 46.62 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU CGAAG :AGU :GUUA+C CA UU+AU G U+ACAGU+AGUU+CAG++ 87492 GGCUGGUCCGAAGGAAGUGAGUUACCUCAGUUGAUGGGUCACAGUCAGUUACAGAUCaac 87551 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C: ACU: UG A UU ACUAG:CUU 87552 cUCCUUGUUCUacucuuUCCCCUCAUCUGACUAUUGUAUUUCACUAGUCUU 87602 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1826,sp|AC096733.3|AC096733 Homo sapiens BAC clone RP11-102N12 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAAGGUCAUGAGCUAUCUCCAUUGAUCACAGUCAGUUGCAGAUGGAACUCCUUUUCUACUCUUUCCCCACUUCUCACUGCUGCACUUGACUAGUCUU hit 492 : 9804 9699 (rev) 49.90 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGAAGGU::UG:G UAUC C A UUGAU+ACAGU+AGUU CAG++ 179228 GGCUGGUCCGAAGGUCAUGAGCUAUCUCCA----UUGAUCACAGUCAGUUGCAGAUGgaa 179283 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU UUCU U C+C C +C:CA::GCUGCACUUGACUAG:CUU 179284 cUCCUU-UUCUacucuuUCCCCACUUCUCACUGCUGCACUUGACUAGUCUU 179333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1850,sp|AC096757.3|AC096757 Homo sapiens BAC clone RP11-543H9 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUGUGAAGGUCGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUACUCUUUCACCCCUUCUCACUACUGUAGUUGGCUAGUCUU hit 493 : 116625 116515 (rev) 50.47 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG GAAGG::GUG:GUUAUC CA UU+AUUG+U+ACAGU+AGUU+CAG++ 71840 GGCUGGUGUGAAGGUCGUGAGUUAUCUCAGUUGAUUGUUCACAGUCAGUUACAGAUCaaa 71899 .__________.....___._______>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUC.UccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC +CCC +C:CAC::CUG A UU CUAG:CUU 71900 cUCCUUGUUCUacucuUUCaCCCCUUCUCACUACUGUAGUUGGCUAGUCUU 71950 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1865,sp|AC096772.3|AC096772 Homo sapiens BAC clone RP11-801F7 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCUGUGUGCAGUUGUGUUUACAACUAUGAUCACCACGAGUUACAGAUUUCUUUGUUCCCUCUCCAUUCCCACUGCUUCACUUGACUAGCCUA hit 494 : 9008 9105 (fwd) 41.02 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUC G G:AGU:G U++U+ACAA+UA UGAU+AC AGUU+CAG+++UC 9008 GGCUAGUCUGUGUGCAGUUG-UGUUUACAACUA--UGAUCACCACGAGUUACAGAUUUCU 9064 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UCUCC+ +CC:ACU:CU CACUUGAC:AGCCU 9065 UUGUUCCCUCUCCAUUCCCACUGCUUCACUUGACUAGCCUA 9105 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1902,sp|AC097015.2|AC097015 Homo sapiens chromosome 3 clone RP11-82B23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGGGAGUGAAUUAUCUCACCUGACUGUUCACAGCCAGUUACAGACCAAAUUCCUUGUUCUACUCUUUCUACUUUCUCACUAUGGCACCCGACUAGUCUU hit 495 : 149666 149775 (fwd) 40.80 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCC AAG AGUG: UUAUC CA +U+A UG+U+ACAG +AGUU+CAG+ 149666 GGCUGGUCCAAAGGGAGUGAAUUAUCUCACCUGACUGUUCACAGCCAGUUACAGACCaaa 149725 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUCU C +C:CACU GCAC GACUAG:CUU 149726 uUCCUUGUUCUacucuUUCUACUUUCUCACUAUGGCACCCGACUAGUCUU 149775 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1918,sp|AC097173.1|AC097173 Homo sapiens BAC clone RP11-96A1 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCCGAAUGCAGUGGUGUUUAUAAUUAAUUGAUCACAACGAGCUACAGAUUUAUUUAUUCCUUCUCCACUUCCACCACUUCACUUGACUAGCCUU hit 496 : 18064 18163 (fwd) 54.91 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUCCGAA G GUGG U++U+A AAUUAAUUGAU+ACA AG U+CAG+++U 18064 GGCUAGUCCGAAUGCAGUGG-UGUUUAUAAUUAAUUGAUCACAACGAGCUACAGAUUUAU 18122 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC UUCUCC+C+ CCAC CU CACUUGAC:AGCCUU 18123 UUAUUCCUUCUCCACUUCCACCACUUCACUUGACUAGCCUU 18163 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1944,sp|AC097378.2|AC097378 Homo sapiens BAC clone RP11-123G5 from 4, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUGUGAAAGUAGUGCGUUAUCGAAAUUGAUUUUUCACAAUCAGUUAUUAAUCGAACUCCUUGUUCUACCCUUUCCCCUCCUGUCACUACUGCAAUUCACUAGUCUA hit 497 : 145954 145844 (rev) 39.63 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGU GAA+G:AGUG GUUAUC AAUU+AUU +U+ACA U+AGUU+ +A+ 11464 AGCUGGUGUGAAAGUAGUGCGUUAUCGAAAUUGAUUUUUCACAAUCAGUUA-UUAAUcga 11522 ..__________......__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C CC+ CACU:CUGCA UU ACUAG::U 11523 acUCCUUGUUCUacccuuUCCCCUCCUGUCACUACUGCAAUUCACUAGUCUA 11574 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2024,sp|AC097525.3|AC097525 Homo sapiens BAC clone RP11-627E8 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUGGUGAGUUAGCUCAGUUGAUUGGUCACAGUCAGUUAAAGAUCCAGUUCCUUGUUCUGCUCUUUCCCUCUUCUUACUAUUGUACUUGACUAGUCUA hit 498 : 20919 21028 (fwd) 44.89 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAG ::GU :GUUA C CA UU+AUUG U+ACAGU+AGUU+ AG++ 20919 GGCUGGUCUGAAGGUGGUGAGUUAGCUCAGUUGAUUGGUCACAGUCAGUUAAAGAUCcag 20978 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+C C +C: AC:: UG ACUUGACUAG:CU 20979 uUCCUUGUUCUgcucuUUCCCUCUUCUUACUAUUGUACUUGACUAGUCUA 21028 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2045,sp|AC097638.2|AC097638 Homo sapiens chromosome 3 clone RP11-353H3, complete sequence. ----isReversed: 1 ----hitSequence: AGAGGGUCUGAAGUUAUCACAGUGAGUUAUCUCAGUUGAUCGUUCAUGGUCAGUUACAGAUCGAACUCCUUGUUCCACUCUUUCCCCACCCUUCUCACUACUGCACUUGACUAGCCAA hit 499 : 58841 58724 (rev) 27.94 bits <<<<<<<<-----.....<<<<<<<___________________________________ 1 ggcugGUcCGAAg.....guagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAgu 55 :G: GGUC GAAG : AGUG:GUUAUC CA UU+AU G+U+A++GU+AGUU+CAG+ 111490 AGAGGGUCUGAAGuuaucACAGUGAGUUAUCUCAGUUGAUCGUUCAUGGUCAGUUACAGA 111549 __....__________.....__________...>>>>>>>------->>>>>>>>:: 56 Aa....UCcUUgUUCU.....UUCUccCCCC...ccAcugcUgcaCUUgACuagccUU 101 + UCCUUGUUC UUC+CC+CCC :CACU :UGCACUUGACU :C: 111550 UCgaacUCCUUGUUCCacucuUUCCCCACCCuucUCACUACUGCACUUGACUAGCCAA 111607 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2063,sp|AC097658.2|AC097658 Homo sapiens BAC clone RP11-364L4 from 4, complete sequence. ----isReversed: 0 ----hitSequence: AUCUGGUCUGAGUGCAGUGGUGUUUGCAACUAAUUGAUCACACCAGGUACAGAUUUCUUUGUUCCUUCUCCAUGCCCCCUGCUUCACUUGACUAGCCUA hit 500 : 82076 82174 (fwd) 46.35 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : CUGGUC GA G:AG GG U++U+ CAA+UAAUUGAU+AC +AG U+CAG+++UC 82076 AUCUGGUCUGAGUGCAGUGG-UGUUUGCAACUAAUUGAUCAC-ACCAGGUACAGAUUUCU 82133 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ CCC CU:CU CACUUGACUAG :U 82134 UUGUUCCUUCUCCAUGCCCCCUGCUUCACUUGACUAGCCUA 82174 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2092,sp|AC098483.2|AC098483 Homo sapiens chromosome 1 clone RP11-438F14, complete sequence. ----isReversed: 1 ----hitSequence: GGAUGAUCUGAAGAUAGUUAUCUCAAUUGAUUGUUCACAGCCAGUUACAGAUAGAAUUCCUUGUUCUACAUUUUCCUCCCUUCUCACUAGUGCACUUGAGUAGUCUU hit 501 : 70825 70719 (rev) 45.81 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G::UG:UC GAAG::AGU:: UC CAAUU+AUUG+U+ACAG +AGUU+CAG++A 107041 GGAUGAUCUGAAGAUAGUUA----UCUCAAUUGAUUGUUCACAGCCAGUUACAGAUAgaa 107096 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CUCCC +C::ACU::UGCACUUGA:UA::CUU 107097 uUCCUUGUUCUacauuuUCCUCCCUUCUCACUAGUGCACUUGAGUAGUCUU 107147 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2114,sp|AC098614.3|AC098614 Homo sapiens chromosome 3 clone RP11-222K16, complete sequence. ----isReversed: 1 ----hitSequence: CGCUGGUCCAAGGGCAGUGGUGUUUACAACUAAUUGAUCACAAUCAGUUACAGAUUUCUUUGUUCCUUUUCCAUUCCCACUGCUUCACCUGACGAGCCUA hit 502 : 10189 10090 (rev) 57.89 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GCU GUCC A GG:AGUGG U++U+ACAA+UAAUUGAU+ACA U+AGUU+CAG+++UC 190191 CGCUGGUCCAAGGGCAGUGG-UGUUUACAACUAAUUGAUCACAAUCAGUUACAGAUUUCU 190249 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UU UCC+ +CCCACU:CU CAC UGAC AGC U 190250 UUGUUCCUUUUCCAUUCCCACUGCUUCACCUGACGAGCCUA 190290 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2136,sp|AC098690.3|AC098690 Homo sapiens chromosome 1 clone RP11-507I14, complete sequence. ----isReversed: 0 ----hitSequence: GCCUGGUCCAAGGGAAGUGUUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUGUUUCUUCUGCAUCCCCACUGCUUCACUUGACUAGUCUU hit 503 : 121963 122060 (fwd) 60.97 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCC A GG:AGUG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++ C 121963 GCCUGGUCCAAGGGAAGUGU-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUU-UC 122020 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC UUCU C+ CC CACU:CU CACUUGACUAG:CUU 122021 UGUUUC-UUCUGCAUCCCCACUGCUUCACUUGACUAGUCUU 122060 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2169,sp|AC098820.3|AC098820 Homo sapiens BAC clone RP11-253L15 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUAUUUACAAAUAACUGACCACAACCAGUUACAAAUUUCUUUGUUCCUUUUCCACCCCCACUCCUUCACUUGACUAGCCUU hit 504 : 16025 16124 (fwd) 57.80 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G AGUGG U +U+ACAA UAA UGA +ACA +AGUU+CA +++UC 16025 GGCUGGUCCAAGUGCAGUGG-UAUUUACAAAUAACUGACCACAACCAGUUACAAAUUUCU 16083 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UU UCC+CCCCCACU CU CACUUGACUAGCCUU 16084 UUGUUCCUUUUCCACCCCCACUCCUUCACUUGACUAGCCUU 16124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2209,sp|AC098934.3|AC098934 Homo sapiens chromosome 1 clone RP11-480I12, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCUGAGGGCAGUGGUGUUUACAACUGUUGACCACAAUCAGUUACAGAUUUCUUUCUUCUUGCUCCACACCUGCUGCUUCAUGUGAUUAGUCUU hit 505 : 176149 176051 (rev) 34.42 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CU: UC GA GG:AG G U++U+ACAA+U+ UUGA +ACA U+AGUU+CAG+++UC 25706 GGCUAGUCUGAGGGCAGUGG-UGUUUACAACUG-UUGACCACAAUCAGUUACAGAUUUCU 25763 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUCUU CUCC+C CC CU:CU CA UGA :AG:CUU 25764 UUCUUCUUGCUCCACACCUGCUGCUUCAUGUGAUUAGUCUU 25804 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2218,sp|AC098972.2|AC098972 Homo sapiens chromosome 3 clone RP11-197J13, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAUGGUAGUGGGUUAUCAGAACUUAUUAAUAUUAGUGUCACUAAGGUUGAUAUAUAACCCCCCACUAAAUUUGACUGGCUUA hit 506 : 60901 60811 (rev) 31.89 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUC GA G :AGUGGGUUAUCA AA U AUUA UUAGU UCA+UAA 85093 GGCUGGUCUGAUGGUAGUGGGUUAUCA----GAACUUAUUAAUAUUAGUGUCACUAA-GG 85147 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+U U CCCCCCACU: UUGACU:GC+U 85148 UUGAUAUa---UAACCCCCCACUAAAU---UUGACUGGCUUA 85183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2301,sp|AC099521.2|AC099521 Homo sapiens chromosome 16 clone RP11-71L14, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUUCGAAGGUAGUGUGUUAUUUCAGUUGAUUGCUCACUGUCAGUUACAGGUUGAACUCCUUGUUCUACUCUGUCCCCCUUCUUGCCACUGCACUUGACUAGUUUA hit 507 : 154824 154715 (rev) 44.73 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGGU:CGAAGG: G GUUAU+ CA UU+AUUG U+AC GU+AGUU+CAG ++ 12422 GGCUGGUUCGAAGGUAGUGUGUUAUUUCAGUUGAUUGCUCACUGUCAGUUACAGGUUgaa 12481 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UC+CCC +C C :CUGCACUU:ACUAG:+U 12482 cUCCUUGUUCUacucuGUCCCCCUUCUUGCCACUGCACUUGACUAGUUUA 12531 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2336,sp|AC099570.2|AC099570 Homo sapiens chromosome 1 clone RP11-430I15, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAAUUGAUCACAACCAGUUACAGGUUUCUUGGUUCCUUUCCACUCCCACUGCUUCAUCUGACUAGCCUA hit 508 : 131695 131789 (fwd) 47.19 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA G:AGUGG U++U+ACAA UUGAU+ACA +AGUU+CAG ++UC 131695 GGCUGGUCUGAGUGCAGUGG-UGUUUACAA----UUGAUCACAACCAGUUACAGGUUUCU 131749 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U+GUUC U UCC+C+CCCACU:CU CA UGACUAGCCU 131750 UGGUUC-CUUUCCACUCCCACUGCUUCAUCUGACUAGCCUA 131789 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2336,sp|AC099570.2|AC099570 Homo sapiens chromosome 1 clone RP11-430I15, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAGAGGUUUCUUGGUUUCUUCUCCACUCCCACUGCUUCAUCUGACUAGCCUA hit 509 : 163815 163914 (fwd) 54.71 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A GUAGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+ AG ++ C 163815 GGCUGGUCCAAGUGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUAGAGGUU-UC 163872 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U U UUCUCC+C+CCCACUGCU CA UGACUAGCCU 163873 UUGGUUUcUUCUCCACUCCCACUGCUUCAUCUGACUAGCCUA 163914 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2336,sp|AC099570.2|AC099570 Homo sapiens chromosome 1 clone RP11-430I15, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCGGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACUAGUUACAGGUUUCUUGGUUCCUUCUCCACUGCCACUGCUUCACCUGACUAGCCUA hit 510 : 180483 180582 (fwd) 62.06 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA GUAGUGG U++U+ACAA+UAAUUGAU+ACA UAGUU+CAG ++UC 180483 GGCUGGUCGGAGUGUAGUGG-UGUUUACAACUAAUUGAUCACAACUAGUUACAGGUUUCU 180541 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U+GUUC UUCUCC+C+ CCACUGCU CAC UGACUAGCCU 180542 UGGUUCCUUCUCCACUGCCACUGCUUCACCUGACUAGCCUA 180582 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2359,sp|AC099676.2|AC099676 Homo sapiens chromosome 1 clone RP11-465N4, complete sequence. ----isReversed: 0 ----hitSequence: GGGUGACCGAAGACGUAUUACUUGGUGUUUACAACUAAUUGAUCACAAGCAGUUACAGAUUUCUUUGUUCCUUCACUCCCACUGUUUCACUUGAAUGGCCUU hit 511 : 171440 171541 (fwd) 38.20 bits <<<<<<<<-----.....<<<<<<<___________________________________ 1 ggcugGUcCGAAg.....guagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAgu 55 GG :G CCGAAG :UA U:GGU++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+ 171440 GGGUG-ACCGAAGacguaUUACUUGGUGUUUACAACUAAUUGAUCACAAGCAGUUACAGA 171498 ______________________>>>>>>>------->>>>>>>>:: 56 AaUCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 ++UC UUGUUC U+C+C+CC:A UG:U CACUUG U: CCUU 171499 UUUCUUUGUUCC---UUCACUCCCACUGUUUCACUUGAAUGGCCUU 171541 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2384,sp|AC099778.2|AC099778 Homo sapiens chromosome 3 clone RP11-708J19, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAUUAAGUGCAGUAGUAUUUACAUCUAAAUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCUGUUCCCACUGCUGUAUUUGACUAACCAA hit 512 : 145600 145697 (fwd) 31.21 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG+U::U: A G:AGU:G U +U+ACA +UAA UGAU+ACA +AGUU+CAG+++UC 145600 GGCUAUUA--AGUGCAGUAG-UAUUUACAUCUAAAUGAUCACAACCAGUUACAGAUUUCU 145656 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC +CC:ACU:CUG A UU:A::A+CC 145657 UUGUUCCUUCUCUGUUCCCACUGCUGUAUUUGACUAACCAA 145697 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2388,sp|AC099782.2|AC099782 Homo sapiens chromosome 3 clone RP11-852E15, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGCUAUCUCAAUCGGAUUGUUCACACUCAGUUACAGAUUGAACUCCUUGUUCUACUUUCCCUGCUUCUCUCUACUGCAAUUGACUAGUCUU hit 513 : 89112 89221 (fwd) 53.90 bits <<<<<<<<-----<<<<<<<___________.__________________________.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAU.UaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUGGUC GAAGG:AG G:G UAUC CAAU +AUUG+U+ACA U+AGUU+CAG+++ 89112 GGCUGGUCUGAAGGUAGUGAGCUAUCUCAAUcGGAUUGUUCACACUCAGUUACAGAUUga 89171 ..__________....__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:C CU:CUGCA UUGACUAG:CUU 89172 acUCCUUGUUCUacuuUCCCUGCUUCUCUCUACUGCAAUUGACUAGUCUU 89221 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2415,sp|AC099850.7|AC099850 Homo sapiens chromosome 17, clone CTD-2510F5, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGAUCUGAGUGUAAUGGUGUUUACAAUUAAUUGAUUACAACCAGUUACAGAUUUCUUUAUUUCUCCACUCCCACUGCUUCAUUUGACUAGUCUU hit 514 : 3478 3382 (rev) 57.18 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUG:UC GA GUA:UGG U++U+ACAAUUAAUUGAUUACA +AGUU+CAG+++ C 206867 GGCUGAUCUGAGUGUAAUGG-UGUUUACAAUUAAUUGAUUACAACCAGUUACAGAUU-UC 206924 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU U+UUUCUCC+C+CCCA:UGCU CA UUGA:UAG:CUU 206925 UU--UAUUUCUCCACUCCCACUGCUUCAUUUGACUAGUCUU 206963 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2444,sp|AC100787.17|AC100787 Homo sapiens chromosome 17, clone CTD-2589J4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCCAGUGCAGUGGUGUUUACAGCUAGUUGAUCACAAUCAGAGAUUUUUAUGUUCCUUCUCCAAUCCCACUGCUUCACUUGACUAGCCUU hit 515 : 83349 83444 (fwd) 46.08 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:AGUGG U++U+ACA +UA UUGAU+ACA U+AG + A U++ 83349 GGCUGGUCCCAGUGCAGUGG-UGUUUACAGCUAGUUGAUCACAAUCAG--AGAUUUU-UA 83404 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U+ UUC UUCUCC+ +CCCACU:CU CACUUGACUAGCCUU 83405 UG-UUCCUUCUCCAAUCCCACUGCUUCACUUGACUAGCCUU 83444 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2446,sp|AC100789.2|AC100789 Homo sapiens chromosome X, clone RP11-907I17, complete sequence. ----isReversed: 0 ----hitSequence: CACAGUCCUGAGUGUGGUGGUGUUUACAACUAAUCGAUCACAACCAGUUACAGAUUCCUUUGUUCUGUCUCCACUCUCACUGCUUCACUUGACUAGCUAA hit 516 : 72176 72275 (fwd) 38.88 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :C G::C GA GU:GUG U++U+ACAA+UAAU GAU+ACA +AGUU+CAG++++C 72176 CACAGUCCUGAGUGUGGUGG-UGUUUACAACUAAUCGAUCACAACCAGUUACAGAUUCCU 72234 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCU UCUCC+C+C CAC:GCU CACUUG::U G: 72235 UUGUUCUGUCUCCACUCUCACUGCUUCACUUGACUAGCUAA 72275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2467,sp|AC100814.2|AC100814 Homo sapiens chromosome 8, clone CTD-3025N20, complete sequence. ----isReversed: 1 ----hitSequence: CUAUGGUCUGAGUGCAGUGAUGUUUACACCUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUGCAUUCCCACUGCUUCACUUAUCUAGACUU hit 517 : 20612 20520 (rev) 28.80 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :UGG GA G:AGUG U++U+ACA + U+ACA +AGUU+CAG+++UC 148926 CUAUGGUCUGAGUGCAGUGA-UGUUUACACC-------UCACAACCAGUUACAGAUUUCU 148977 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+ +C CACU:CU CACUU CUA: UU 148978 UUGUUCCUUCUGCAUUCCCACUGCUUCACUUAUCUAGACUU 149018 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2484,sp|AC100840.2|AC100840 Homo sapiens chromosome 15, clone RP11-537K8, complete sequence. ----isReversed: 0 ----hitSequence: AGCAGGUCUGAAGGUAGUGAGUUAUCUCAAUUGACUGUUCACAGUCAGUUACAGAUCGAAACCCUUGUUUGAUAUUUCCCCACUUCUCACUACUGCACUUGACUAGUCUU hit 518 : 65524 65633 (fwd) 56.27 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::C GGUC GAAGG:AGUG:GUUAUC CAAUU+A UG+U+ACAGU+AGUU+CAG++ 65524 AGCAGGUCUGAAGGUAGUGAGUUAUCUCAAUUGACUGUUCACAGUCAGUUACAGAUCgaa 65583 ..__________....__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +C U++UU + U C+C C +C:CACU:CUGCACUUGACU G::UU 65584 acCCUUGUUUGAuauuUCCCCACUUCUCACUACUGCACUUGACUAGUCUU 65633 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2485,sp|AC100843.2|AC100843 Homo sapiens chromosome 18, clone RP11-640A1, complete sequence. ----isReversed: 1 ----hitSequence: GGCAGGUCUGAGUGCAAUGGUGUUUACAACCAAUUAAUCACAACCAGUUAACAGAUUUAUUUGUUCCUUCUCCACUCCCACUGCUUCACUUAACUAGUAAA hit 519 : 126039 125939 (rev) 39.95 bits <<<<<<<<-----<<<<<<<_______________________________.________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUU.CAguAaUC 59 :C GGU GA G:A:UGG U++U+ACAA+ AAUU AU+ACA +AGUU+ CAG+++U 54122 GGCAGGUCUGAGUGCAAUGG-UGUUUACAACCAAUUAAUCACAACCAGUUAaCAGAUUUA 54180 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCA:U:CU CACUU ACU G: 54181 UUUGUUCCUUCUCCACUCCCACUGCUUCACUUAACUAGUAAA 54222 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2505,sp|AC100873.2|AC100873 Homo sapiens chromosome 8, clone RP11-978P4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAUGGUAGUGAUUUAUCAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCCCCCACUGCUAAAUUUGACUGGCUUU hit 520 : 44333 44426 (fwd) 49.31 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUCCGA GGUAGUG +UUAUCA AA U AUUA UUAGU UCA+UAA 44333 GGCUGGUCCGAUGGUAGUGAUUUAUCA----GAACUUAUUAACAUUAGUGUCACUAA-AG 44387 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCC CACUGCU +A UUGACU:GC+UU 44388 UUGGUAUa---CAACCCCCCACUGCUAAAUUUGACUGGCUUU 44426 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2551,sp|AC103686.4|AC103686 Homo sapiens chromosome 8, clone CTD-2655I2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAGUCCAAGUGCAGUGGUUUUUGCAACUAAUUGAUCACAAACAUUUAAGAUUUCUUUGUUGAUUCUCCACUUCUGAUGCUUCACUUGACUAUACUU hit 521 : 48627 48529 (rev) 38.88 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G U:GUCC A G:A G UU+U+ CAA+UAAUUGAU+ACA +A UU+ AG+++UC 127958 GGCUAGUCCAAGUGCAGUGG-UUUUUGCAACUAAUUGAUCACAAACAUUUA-AGAUUUCU 128015 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU +UUCUCC+C+ C U:CU CACUUGAC:A CUU 128016 UUGUUGAUUCUCCACUUCUGAUGCUUCACUUGACUAUACUU 128056 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2651,sp|AC103952.5|AC103952 Homo sapiens chromosome 8, clone CTD-2320G14, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCUCUGAGUGCGGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUUGUUUCUUCUCCACUUCCACUGCUUCACUUGACUAGCUUU hit 522 : 48363 48467 (fwd) 51.02 bits <<<<<<.<<-----<<<<<<<_____________________________________._ 1 ggcugG.UcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.U 58 +GCUGG UC GA G::GUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++ U 48363 GGCUGGcUCUGAGUGCGGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUuU 48421 _________...__________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UU U UUCUCC+C+ CCAC::CU CACUUGACUAGC+UU 48422 UUUGUUUGUuucUUCUCCACUUCCACUGCUUCACUUGACUAGCUUU 48467 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2711,sp|AC104066.3|AC104066 Homo sapiens BAC clone RP11-177B4 from 4, complete sequence. ----isReversed: 0 ----hitSequence: CGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUAGAUCACAACCAGUUACAUAACUCUUUGUUCCUUCUCCAUUCCCACUGCUUCACUAGACUAGCCUU hit 523 : 124343 124442 (fwd) 57.31 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GCUGGUCC A G:AGUGG U++U+ACAA+UAAU GAU+ACA +AGUU+CA +A UC 124343 CGCUGGUCCAAGUGCAGUGG-UGUUUACAACUAAUAGAUCACAACCAGUUACAUAACUCU 124401 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +CCCACU:CU CACU GACUAGC UU 124402 UUGUUCCUUCUCCAUUCCCACUGCUUCACUAGACUAGCCUU 124442 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2739,sp|AC104108.3|AC104108 Homo sapiens chromosome 5 clone CTD-2037K23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUUGGAGUGCAGUGCUAUUUACAAUUAAUUGAUCAUAACUGGUUACAGAUUUAUUUGUUCUCUCUCUACUUCCAUUGCUUCACUUGACUAGCUUU hit 524 : 54724 54823 (fwd) 53.42 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GCUGGU: GA G:A UG U +U+ACAAUUAAUUGAU+A+A U+GUU+CAG+++U 54724 GGCUGGUUGGAGUGCAGUGC-UAUUUACAAUUAAUUGAUCAUAACUGGUUACAGAUUUAU 54782 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCU UCUC +C+ CA U:CU CACUU:ACUAGC+UU 54783 UUGUUCUCUCUCUACUUCCAUUGCUUCACUUGACUAGCUUU 54823 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2818,sp|AC104305.2|AC104305 Homo sapiens chromosome 3 clone RP11-523D22, complete sequence. ----isReversed: 1 ----hitSequence: GGCUAAUCAUAGUGCCAUGGUGUUUACAACUAAUUGAUUGUAACUAGUUACAGAUUUGUUUCUUCUCCACUCCCACUGCUUCACUUGACUAGUCUU hit 525 : 142680 142585 (rev) 43.31 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CU::UC A G:::UGG U++U+ACAA+UAAUUGAUU +A UAGUU+CAG+++ 7179 GGCUAAUCAUAGUGCCAUGG-UGUUUACAACUAAUUGAUUGUAACUAGUUACAGAUU--- 7234 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC UUCUCC+C+CCCA:::CU CACUUGA::AG:CUU 7235 UGUUUC-UUCUCCACUCCCACUGCUUCACUUGACUAGUCUU 7274 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2834,sp|AC104335.2|AC104335 Homo sapiens chromosome 1 clone RP11-433K2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUGCAAAGGUAAUGAGUUAUCACGAUUGUUCAGUGAGUUACACAUCAAACACCUUGUUCUGCUCUUCCCCUGACUCUCACUACUGCAUCUGACUAGUCAU hit 526 : 63278 63382 (fwd) 30.42 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU C AAGG:A:UG:GUUAUCA +AUUG+U+A GU AGUU+CA+++ 63278 GGCUGGUGCAAAGGUAAUGAGUUAUCA----CGAUUGUUCA--GUGAGUUACACAUCaaa 63331 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CCUUGUUCU C++ +C+C:CA:U:CUGCA U ACUAG:C U 63332 cACCUUGUUCUgcucuuCCCCUGACUCUCACUACUGCAUCUGACUAGUCAU 63382 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2835,sp|AC104336.2|AC104336 Homo sapiens chromosome 1 clone RP4-783C10, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAGUGCAGUAUUGUUUACAACUAACUGAUCACAACCAGUUAUAGAUUUCUUUGUUCAUCUCCACUCCCACUGCCUCGCUUGAUAGCAAA hit 527 : 58702 58605 (rev) 39.03 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUGGUC GA G:AGU: U++U+ACAA+UAA UGAU+ACA +AGUU+ AG+++UC 75460 AGCUGGUCUGAGUGCAGUAU-UGUUUACAACUAACUGAUCACAACCAGUUAUAGAUUUCU 75518 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC +UCUCC+C+C :ACU:C C CUUGA UAGC: 75519 UUGUUC-AUCUCCACUCCCACUGCCUCGCUUGA-UAGCAAA 75557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2863,sp|AC104411.5|AC104411 Homo sapiens 3 BAC RP11-555M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUUACUAAUAUCAGUGUCACUAAAGUUGGUAUACAAUCUCCCACUGCUAUUUGACUGGUAAA hit 528 : 37779 37688 (rev) 35.25 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :C:GGUCCGA GGUAGUGGGUUAUCA AA U A UA U+AGU UCA+UAA 32721 GGCUGGUCCGAUGGUAGUGGGUUAUCA----GAACUUACUAAUAUCAGUGUCACUAA-AG 32775 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + C+CCCACUGCU UUGACU:G: 32776 UUGGUAUa---CAAUCUCCCACUGCUAU--UUGACUGGUAAA 32812 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3015,sp|AC104741.2|AC104741 Homo sapiens chromosome 3 clone RP11-228H5, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUUCAAGUGCAGUGUGGUGUUUACAACCAACUGAUCACAGCCAGUUACAGAUUUCUUUGUUCCUUUUCUACUCCCACUGCUUCACUUGACUAGCCAU hit 529 : 82449 82550 (fwd) 56.75 bits <<<<<<<<-----<<<<<<.<_______________________________________ 1 ggcugGUcCGAAgguagUg.gGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUC 59 GGCUGGU:C A G:AGUG GGU++U+ACAA+ AA UGAU+ACAG +AGUU+CAG+++UC 82449 GGCUGGUUCAAGUGCAGUGuGGUGUUUACAACCAACUGAUCACAGCCAGUUACAGAUUUC 82508 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UU UC +C+CCCACU:CU CACUU:ACUAGCC U 82509 UUUGUUCCUUUUCUACUCCCACUGCUUCACUUGACUAGCCAU 82550 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3036,sp|AC104787.4|AC104787 Homo sapiens BAC clone RP11-125K13 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGGCAGUGAUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUCCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 530 : 26056 25958 (rev) 64.67 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC G AGG:AGUG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG++++C 18436 GGCUGGUCUG-AGGCAGUGA-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUCCU 18493 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C CACU:CU CACUUGACUAGCCUU 18494 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 18534 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3065,sp|AC104816.4|AC104816 Homo sapiens BAC clone RP11-690I4 from 4, complete sequence. ----isReversed: 0 ----hitSequence: GGCUUAUCCAAGUGCAGUAAUGCUUACAACUAAUUUAUCACAACCAGUUACAGAUUUUUUUUUCUUUACUCUCACUGAUUCACUUGACUAGUAAA hit 531 : 44967 45061 (fwd) 36.16 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :CU :UCC A :AGU:: U+ U+ACAA+UAAUU AU+ACA +AGUU+CAG+++ 44967 GGCUUAUCCAAGUGCAGUAA-UGCUUACAACUAAUUUAUCACAACCAGUUACAGAUU-UU 45024 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+UUC U+ +C+C::ACU: U CACUUGA: AG: 45025 UUUUUC----UUUACUCUCACUGAUUCACUUGACUAGUAAA 45061 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3076,sp|AC104828.4|AC104828 Homo sapiens BAC clone RP11-804N11 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGUUAGUCUGAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUCACUAAAAUUGGUAUACAACUCCCCACUGCUAAAUUUGGCUAAAAAG hit 532 : 73323 73230 (rev) 30.64 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 U:G C GA GGUAGUGGGUUAUCA AA U AUUA UUAGU UCA+UAA 108167 GGUUAGUCUGAUGGUAGUGGGUUAUCA----GAACUUAUUAACAUUAGUGUCACUAA-AA 108221 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + C CCCCACUGCU +A UUG C:A 108222 UUGGUAUa---CAACUCCCCACUGCUAAAUUUGGCUAAAAAG 108260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3097,sp|AC104942.5|AC104942 Homo sapiens chromosome 11, clone RP11-76I23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGACUUUGUUUCUUCUCCAGUCCUGCUGCUUCACUUGACUAGCCUU hit 533 : 4981 5077 (fwd) 58.13 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCCGA G:AG G U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+ + 4981 GGCUGGUCCGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGACU-UU 5038 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UUC UUCUCC+ +CC CU:CU CACUUGACUAGCCUU 5039 GU-UUC-UUCUCCAGUCCUGCUGCUUCACUUGACUAGCCUU 5077 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3121,sp|AC104996.4|AC104996 Homo sapiens chromosome 17, clone RP11-1148O4, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCCCAUGGUAGGGGGUUAUCAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCUCCCACUGCUAACCUUGACUGGCUUU hit 534 : 121083 120990 (rev) 46.24 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +G::GGUCC A GGUAG:GGGUUAUCA AA U AUUA UUAGU UCA+UAA 34766 GGUUGGUCCCAUGGUAGGGGGUUAUCA----GAACUUAUUAACAUUAGUGUCACUAA-AG 34820 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CC+CCC:CUGCU ++CUUGACU::C+UU 34821 UUGGUAUa---CAACCUCCCACUGCUAACCUUGACUGGCUUU 34859 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3222,sp|AC105267.3|AC105267 Homo sapiens chromosome 3 clone CTD-3211M3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUAUCUCAAUUGUUCACAGUUAGUUACAGGUUGAAUGCCUUGUUCUACUCUUUCCCCUUUCUCACUGCUGCACUUGACCAGUCUU hit 535 : 88773 88878 (fwd) 58.63 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU:GUC GAAGGUAGUG:GUUAUC CAA UUG+U+ACAGUUAGUU+CAG ++ 88773 GGCUGGUCUGAAGGUAGUGAGUUAUCUCAA----UUGUUCACAGUUAGUUACAGGUUgaa 88828 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CCUUGUUCU UUC+CC +C:CACUGCUGCACUUGAC:AG:CUU 88829 uGCCUUGUUCUacucuUUCCCCUUUCUCACUGCUGCACUUGACCAGUCUU 88878 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3266,sp|AC105381.2|AC105381 Homo sapiens BAC clone RP11-6G22 from 2, complete sequence. ----isReversed: 0 ----hitSequence: CGUUGGUCUGAUGGUAGUGGGUUACCAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGCAUAUAAUCCCCCUGUGCUAAAUUUGACUGCCUUA hit 536 : 63221 63314 (fwd) 32.29 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G::GGUC GA GGUA GGGUUA+CA AA U AUUA UUAGU UCA+UAA 63221 CGUUGGUCUGAUGGUAGUGGGUUACCA----GAACUUAUUAACAUUAGUGUCACUAA-AG 63275 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+ +U U CCCCC UGCU +A UUGACU::C U 63276 UUGGCAUa---UAAUCCCCCUGUGCUAAAUUUGACUGCCUUA 63314 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3280,sp|AC105396.2|AC105396 Homo sapiens BAC clone RP11-560P13 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCCAGUGCCUUGGUAUUUACAACUCAUUGAUCACUACCAGUUACAGACUUUUUUUCUUCCUUCUUCACCCCCAUUGCUUGACUAGCCUU hit 537 : 91222 91317 (fwd) 40.03 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:::UGG U +U+ACAA+U AUUGAU+AC +AGUU+CAG+ + 91222 GGCUGGUCCCAGUGCCUUGG-UAUUUACAACUCAUUGAUCACUACCAGUUACAGACU-UU 91279 _______...__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUCU UUCU+C+CCCCCA:::C UUGACUAGCCUU 91280 UU-UUCUuccUUCUUCACCCCCAUUGC-----UUGACUAGCCUU 91317 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3282,sp|AC105398.3|AC105398 Homo sapiens BAC clone RP11-656O12 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGCGUCUGAAGGUGAUGAGUUAUCUCCAUUAUAACAGAGUCAGUUACACAUAAAACUCGUCCUCCUCUUUCCUCUCUUCUCACUACUCCACUUGACUAGUCUA hit 538 : 9381 9276 (rev) 30.72 bits <<<<<.<<<-----<<<<<<<_____________________________________.. 1 ggcug.GUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUG GUC GAAGG:::UG:GUUAUC C AUUA +A AGU+AGUU+CA+++A 160882 GGCUGcGUCUGAAGGUGAUGAGUUAUCUCCAUUAUA---ACAGAGUCAGUUACACAUAaa 160938 .....__________.__________>>>>>>>------->>>>>>>>:: 58 .....UCcUUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU UCU U CUC C +C:CA:::CU+CACUUGACUAG:CU 160939 acucgUCCUC-CUCUuUCCUCUCUUCUCACUACUCCACUUGACUAGUCUA 160987 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3294,sp|AC105418.5|AC105418 Homo sapiens BAC clone RP11-450O3 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 539 : 45946 46045 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 45946 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 46004 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 46005 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 46045 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3294,sp|AC105418.5|AC105418 Homo sapiens BAC clone RP11-450O3 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 540 : 73922 74021 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 73922 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 73980 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 73981 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 74021 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3294,sp|AC105418.5|AC105418 Homo sapiens BAC clone RP11-450O3 from 7, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGCCCGAGUGCAGUGGUGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA hit 541 : 18271 18172 (rev) 45.62 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU G:CCGA G:AGUGG U+ U+ACA UUAAUUGAU+ACA A UU+CAG+++U 177564 AGCUGGCCCGAGUGCAGUGG-UGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUU 177622 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACU G:C AGC: 177623 UUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA 177663 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3331,sp|AC105761.5|AC105761 Homo sapiens BAC clone RP11-351F21 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCCGGUCUGAGGGUAGUGGUGCUUACAGCUAAUUGAUCACAACCAGUUACAAAUGUAUUUGUUCCUUCUUCACUCCCAUUGCUUCAUUUGACUAGCCAA hit 542 : 50279 50180 (rev) 50.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC:GGUC GA GGUA UGG U+ U+ACA +UAAUUGAU+ACA +AGUU+CA ++ U 34556 GGCCGGUCUGAGGGUAGUGG-UGCUUACAGCUAAUUGAUCACAACCAGUUACAAAUGUAU 34614 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+C+C+CCCA UGCU CA UUGACU:GCC 34615 UUGUUCCUUCUUCACUCCCAUUGCUUCAUUUGACUAGCCAA 34655 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3395,sp|AC106712.5|AC106712 Homo sapiens 3 BAC RP11-221J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAAGGGAGUAAGUUAUCUACACUGUUCACAGUCAGUUACAGAUCAAACUCCUUGUUCUGCUAUUUCCUGGCUUCUCACUGCUGCACUUGACUAGUCUU hit 543 : 146415 146309 (rev) 45.76 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAGG AGU::GUUAUC A UG+U+ACAGU+AGUU+CAG++ 14328 AGCUGGUCCAAAGGGAGUAAGUUAUCU----ACACUGUUCACAGUCAGUUACAGAUCaaa 14383 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CU C +C::ACU CUGCACUUGACUAG::UU 14384 cUCCUUGUUCUgcuauuUCCUGGCUUCUCACUGCUGCACUUGACUAGUCUU 14434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3440,sp|AC106767.2|AC106767 Homo sapiens chromosome 5 clone RP11-269M17, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUAAGUACGGUGGUACUUACAACGAAUUGCUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGUUUCACUUGACUAGUAUU hit 544 : 72584 72683 (fwd) 51.17 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :CUGGUC A :::GUGG U U+ACAA+ AAUUG U+ACA +AGUU+CAG+++UC 72584 GGCUGGUCUAAGUACGGUGG-UACUUACAACGAAUUGCUCACAACCAGUUACAGAUUUCU 72642 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCAC:::U CACUUGACUAG: UU 72643 UUGUUCCUUCUCCACUCCCACUGUUUCACUUGACUAGUAUU 72683 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3470,sp|AC106802.3|AC106802 Homo sapiens chromosome 5 clone RP11-458F20, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAGAGUGUAAUGGAUUUUACAAGUAAUUGAUCACAGCCAGUUACAGAUUUCUUCGUUUCUUCUCCACUCCCACUGCUUCUUCACUUGACUAGCCUU hit 545 : 20433 20331 (rev) 52.15 bits <<<<<<<<-----<<<<<<<_____________________________________.._ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa..U 58 GGCUGGUC GA GUA:UGG U+U+ACAA UAAUUGAU+ACAG +AGUU+CAG+++ U 41883 GGCUGGUCAGAGUGUAAUGG-AUUUUACAAGUAAUUGAUCACAGCCAGUUACAGAUUucU 41941 ___________________>>>>>>>---...---->>>>>>>>:: 59 CcUUgUUCUUUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 C U UUC UUCUCC+C+CCCA:UGCU C ACUUGACUAGCCUU 41942 UCGU-UUC-UUCUCCACUCCCACUGCUUCuucACUUGACUAGCCUU 41985 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3484,sp|AC106821.2|AC106821 Homo sapiens chromosome 5 clone RP11-730N24, complete sequence. ----isReversed: 1 ----hitSequence: AGCUAGUCUGAGUGCAGUCGUGUUUACAACUAAUUGAUCACAACCAGUUACAUAUUUAUUUGUUCUUUUUCUAUUCCCACUGUUUCAUUCUACUAGCCUU hit 546 : 40369 40270 (rev) 41.14 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GU GA :AGU G U++U+ACAA+UAAUUGAU+ACA +AGUU+CA +++U 110987 AGCUAGUCUGAGUGCAGUCG-UGUUUACAACUAAUUGAUCACAACCAGUUACAUAUUUAU 111045 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUU UC + +CC ACU: U CA U AC:AGC:UU 111046 UUGUUCUUUUUCUAUUCCCACUGUUUCAUUCUACUAGCCUU 111086 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3489,sp|AC106827.2|AC106827 Homo sapiens chromosome 3 clone RP11-320P11, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUGUCUGAGUGCAGUGGUGUUUACAACUGGUUGGUCACAACUGGUUACAGAUUUCUUUGUUCUUUCUCUACUCUCACUACUUUACUUGACUAACCAA hit 547 : 137291 137192 (rev) 46.06 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G+U GUC GA G AGUG U++U+ACAA+U+ UUG U+ACA U+GUU+CAG+++UC 19261 AGCUUGUCUGAGUGCAGUGG-UGUUUACAACUGGUUGGUCACAACUGGUUACAGAUUUCU 19319 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUUCUC +C+C CACU CU ACUUGAC A+C: 19320 UUGUUCUUUCUCUACUCUCACUACUUUACUUGACUAACCAA 19360 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3490,sp|AC106845.8|AC106845 Homo sapiens chromosome 8, clone RP11-183J19, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAAUGGUAUCUACAACGAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACGCCCGCUGCUUCACUUGACUAGCCUA hit 548 : 4973 5072 (fwd) 53.57 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:A: GG U +++ACAA+ AAUUGAU+ACA +AGUU+CAG+++U 4973 GGCUGGUCCAAGUGCAAUGG-UAUCUACAACGAAUUGAUCACAACCAGUUACAGAUUUUU 5031 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C CCC :U:CU CACUUGACUAGCCU 5032 UUGUUCCUUCUCCACGCCCGCUGCUUCACUUGACUAGCCUA 5072 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3494,sp|AC106856.5|AC106856 Homo sapiens chromosome 8, clone RP11-64A23, complete sequence. ----isReversed: 1 ----hitSequence: GUUAGGCCCAAAGGUAGUGAAUUAUCUCAAUUGAUUGUUCACAGUCAGUUAUACAUUGAACUCCUUGUUCUACUUUUUCCCUGCUUCUCACUACUGCACUCAACUAGUCUU hit 549 : 77926 77816 (rev) 47.50 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G : GG: C AAGG:AGUG: UUAUC CAAUU+AUUG+U+ACAGU+AGUU+ A++++ 87134 GUUAGGCCCAAAGGUAGUGAAUUAUCUCAAUUGAUUGUUCACAGUCAGUUAUACAUUgaa 87193 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU:CUGCACU :CU : CUU 87194 cUCCUUGUUCUacuuuuUCCCUGCUUCUCACUACUGCACUCAACUAGUCUU 87244 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3532,sp|AC106897.5|AC106897 Homo sapiens BAC clone RP11-279O9 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGGGUAGUGAGUUAUCUCAGUUGAUCAUUCACAGCCAGUUACAGAUUGAACUCCUUGUUCUCUACUCUUUCCCCCUUUUCACUACUGUACUUGGCUAGUCUU hit 550 : 24116 24005 (rev) 56.48 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG C GA GG:AGUG:GUUAUC CA UU+AU +U+ACAG +AGUU+CAG+++ 137457 GGCUGGUCUGAGGGUAGUGAGUUAUCUCAGUUGAUCAUUCACAGCCAGUUACAGAUUgaa 137516 .__________.......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCC + :CACU:CUG ACUUG CUAG:CUU 137517 cUCCUUGUUCUcuacucuUUCCCCCUUUUCACUACUGUACUUGGCUAGUCUU 137568 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3561,sp|AC107055.3|AC107055 Homo sapiens BAC clone RP11-436G13 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAGUGCAGUGAUAUUUACAACAAAUUGAUCACAAGUUAACAGAUUUAUUUGUUCCUCUUCCACUCCUACUAUUUCACUUGACUAGCCUU hit 551 : 77131 77034 (rev) 37.72 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A AGU U +U+ACAA+ AAUUGAU+ACA U U +CAG+++U 67664 GGCUGGUCCAAGUGCAGUGA-UAUUUACAACAAAUUGAUCACAAGU--UAACAGAUUUAU 67720 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U UCC+C+C ACU U CACUUGACUAGCCUU 67721 UUGUUCCUCUUCCACUCCUACUAUUUCACUUGACUAGCCUU 67761 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3569,sp|AC107067.3|AC107067 Homo sapiens BAC clone RP11-10L7 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCUGAGUGCAGUUGGUGUUUACAACUACUUAAUCACAACCAGUUAUGGAUUUCUUUAUUCCAUCUUCACUCCCACUGCUCCACUUGACUAGCCUU hit 552 : 67168 67068 (rev) 54.98 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:UGGUC GA G:AGU:GGU++U+ACAA+UA UU AU+ACA +AGUU+ G+++UC 45124 GGUUGGUCUGAGUGCAGUUGGUGUUUACAACUACUUAAUCACAACCAGUUAUGGAUUUCU 45183 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC +UCU+C+C+CC:ACU:CU+CACUUGACUA:CCUU 45184 UUAUUCCAUCUUCACUCCCACUGCUCCACUUGACUAGCCUU 45224 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3704,sp|AC107939.5|AC107939 Homo sapiens chromosome 11, clone RP11-48O9, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGUCUGAUGGGAGUGGAUUAUCAGAAUUUAUUAACAUUAAUGUUACUAAAAUUGGUUUAUAGCCCCCCACUGCUAAAUUUGACUGGCUUU hit 553 : 55341 55434 (fwd) 39.00 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +G::GGUC GA GG AGUGG UUAUCA AAUU AUUA UUA U U A+UAA 55341 GGUUGGUCUGAUGGGAGUGGAUUAUCA----GAAUUUAUUAACAUUAAUGUUACUAA-AA 55395 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U UU U CCCCCCACU CU +A UUGACU::C+UU 55396 UUGGU--UUAUAGCCCCCCACUGCUAAAUUUGACUGGCUUU 55434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3718,sp|AC107965.4|AC107965 Homo sapiens chromosome 8, clone CTD-2332A4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGCUACAGAUCAAAAUCCUUCUACUCUUUUCCCCUUCUCACUACGGUACUUGAAUAGCCUU hit 554 : 82139 82033 (rev) 56.98 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 GGCUG UC GAAGG:AGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AG U+CAG++ 29894 GGCUGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGCUACAGAUCaaa 29953 .__________..__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU..UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUU U CU UU +CCC +C:CACU:C G ACUUGA UAGCCUU 29954 aUCCUUCUACUcuUUUCCCCUUCUCACUACGGUACUUGAAUAGCCUU 30000 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3752,sp|AC108022.3|AC108022 Homo sapiens BAC clone RP11-9D8 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCUAAAGGUAGCGAGUUAUCUCAGCUGGUCACAGUUGGUUACGAUUGCACUCCUUGUUCUACUCUUUCCUUCCUUCUCACUACUGCACUUAACUAGUCUU hit 555 : 26864 26759 (rev) 38.76 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G::UGGU AAGG:AG:G:GUUAUC CA UG U+ACAGUU+GUU+C U+ 135746 GGUUGGUCUAAAGGUAGCGAGUUAUCUCAG----CUGGUCACAGUUGGUUACGAUUGcac 135801 __________......__________>>>>>>>------->>>>>>>>:: 58 UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CU+CC +C:C:CU:CUGCACUU ACUA::CUU 135802 UCCUUGUUCUacucuuUCCUUCCUUCUCACUACUGCACUUAACUAGUCUU 135851 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3788,sp|AC108059.6|AC108059 Homo sapiens BAC clone RP11-398G9 from 2, complete sequence. ----isReversed: 0 ----hitSequence: UGCUGGUCCAAGUGCAGUGGUGUUUACAACCAAUUGAUCACAGCCAGUUACAGAUUUAUUUGUUCCUUCUCCACUUCCACUGCAUCUCUUGACUAGCCAA hit 556 : 37266 37365 (fwd) 55.45 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUGGUCC A G:AGUGG U++U+ACAA+ AAUUGAU+ACAG +AGUU+CAG+++U 37266 UGCUGGUCCAAGUGCAGUGG-UGUUUACAACCAAUUGAUCACAGCCAGUUACAGAUUUAU 37324 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+ CCACU:C C CUUGACUAGC: 37325 UUGUUCCUUCUCCACUUCCACUGCAUCUCUUGACUAGCCAA 37365 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3891,sp|AC108206.3|AC108206 Homo sapiens BAC clone RP11-203B7 from 4, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAAGGUUGAGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAUGGAUGAAACUCCUUGUUUUACUCUUUUCCCCCUUCUUACUGCUGUGCUUGACUAGUCAA hit 557 : 11041 10931 (rev) 48.01 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCC AAGGU+G :GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+ G++ 134460 GGCUGGUCCAAAGGUUGAGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAUGGAUGaaa 134519 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUU U UUC+CCC +C: C+GCUG CUUGACUAG:C 134520 cUCCUUGUUUUacucuuUUCCCCCUUCUUACUGCUGUGCUUGACUAGUCAA 134570 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3907,sp|AC108222.4|AC108222 Homo sapiens BAC clone RP11-1180N13 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUUGUCUGAAGAUAAUGACUUAUCUCAACUGAUUAUUCACAGUUACAGAUGAAACUCCUUGUUUUACUUUCCCCACUUUUCACUAUUACACUUGACUAGUCUU hit 558 : 5037 4933 (rev) 41.40 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU GUC GAAG::A:UG: UUAUC CAA+U+AUU +U+AC AGUU+CAG++ 16740 GGCUUGUCUGAAGAUAAUGACUUAUCUCAACUGAUUAUUCAC----AGUUACAGAUGaaa 16795 .__________....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUU U U C+C C + :CA:U::U CACUUGAC AG:CUU 16796 cUCCUUGUUUUacuuUCCCCACUUUUCACUAUUACACUUGACUAGUCUU 16844 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3929,sp|AC108471.3|AC108471 Homo sapiens BAC clone RP11-539G18 from 4, complete sequence. ----isReversed: 1 ----hitSequence: AAAGGGUUUUGCAGUGGUGUUUACAAUUAAUUGAUCAUAACCAGUUACAGACUUUUUUCCUUUUCCAUUUCCACUGCUUCGUUUGACUAGCCUU hit 559 : 98955 98862 (rev) 32.80 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 ::: GGU: G:AGUGG U++U+ACAAUUAAUUGAU+A+A +AGUU+CAG+ + 42488 AAAGGGUUUU---GCAGUGG-UGUUUACAAUUAAUUGAUCAUAACCAGUUACAGACU-UU 42542 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU U C UU UCC+ + CCACU:CU C UU:ACU :::UU 42543 UU-UCC-UUUUCCAUUUCCACUGCUUCGUUUGACUAGCCUU 42581 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4027,sp|AC108750.3|AC108750 Homo sapiens 3 BAC RP11-249L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGUGAAUUAUCUCAGUCAAUUGUUCACAGUCAGUUACAGAUUGAGCUCCUUGUUCUACUCUUUCCUUUUUCCCUUCUUCUCACUACUGCACUUGAUAGUCUU hit 560 : 94118 94002 (rev) 50.26 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUC GAAGG:AGUG: UUAUC CA U AAUUG+U+ACAGU+AGUU+CAG+++ 61367 GGCUGGUCUGAAGGUAGUGAAUUAUCUCAGUCAAUUGUUCACAGUCAGUUACAGAUUgag 61426 .__________.............__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.............UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU:CUGCACUUGA UAG:CUU 61427 cUCCUUGUUCUacucuuuccuuuuUCCCUUCUUCUCACUACUGCACUUGA-UAGUCUU 61483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4132,sp|AC109481.3|AC109481 Homo sapiens chromosome 5 clone RP11-47F1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAAGAGUGGAUAACUCAAUUGAUUGUUCACAGUCAGUUAUAGAUUGAACUCCUCGUUUUACUCCUUCUCCCAUUCUCACUACUGCACUUGACUAGUCUU hit 561 : 14072 13965 (rev) 41.69 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGA : AGUGG UA C CAAUU+AUUG+U+ACAGU+AGUU+ AG+++ 6602 GGCUGGUCCGA--AGAGUGG-AUAACUCAAUUGAUUGUUCACAGUCAGUUAUAGAUUgaa 6658 ....__________..__________>.>>>>>>------->>>>>>>>:: 58 ....UCcUUgUUCU..UUCUccCCCCc.cAcugcUgcaCUUgACuagccUU 101 UC UU+U CU UUCUCCC + C CACU :UGCACUUGACUAG:CUU 6659 cuccUCGUUUUACUccUUCUCCCAUUCuCACUACUGCACUUGACUAGUCUU 6709 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4260,sp|AC110275.13|AC110275 Homo sapiens chromosome 8, clone RP11-122A17, complete sequence. ----isReversed: 1 ----hitSequence: GACUGGUCUAAAGGUAGUGAGUUAUCACAAUUGACUGUUCACAGUUACAGAUGGAACUCCUUGUUCUACUACUUCCCCCUUCUCACUAAGUCACUUGACCGGUCAA hit 562 : 51693 51588 (rev) 44.49 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C::GUC AAG :AGUG:GUUAUCACAAUU+A UG+U+AC AGUU+CAG++ 118007 GACUGGUCUAAAGGUAGUGAGUUAUCACAAUUGACUGUUCAC----AGUUACAGAUGgaa 118062 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCC +C:CACU: CACUUGAC::G:C 118063 cUCCUUGUUCUacuacUUCCCCCUUCUCACUAAGUCACUUGACCGGUCAA 118112 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4287,sp|AC110602.8|AC110602 Homo sapiens chromosome 17, clone RP11-67D12, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCUCCGAAGGUAGUGAGUUCUUGAUUGUUUACAGUCAGUUACUGAUGGAACUCCUUGUUCUACUUUUUCCCCCCUUCUCACUACUGCACUCGACUAGUCUU hit 563 : 11356 11460 (fwd) 53.63 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG UCCGAAGG:AGUG:GUU U+ AUUG+UUACAGU+AGUU+C G++ 11356 GGCUGCUCCGAAGGUAGUGAGUUCUUG------AUUGUUUACAGUCAGUUACUGAUGgaa 11409 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CACU:CUGCACU GA UAG:CUU 11410 cUCCUUGUUCUacuuuuUCCCCCCUUCUCACUACUGCACUCGACUAGUCUU 11460 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4376,sp|AC110921.9|AC110921 Homo sapiens chromosome 17, clone CTD-2653B5, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAACGUAGUGAGUUAUCUCAAUUGAUUGUUCACAUUGAGUUACAGAUUGAACUUGUUCUAUUCUUUCCCCCUUUCUUACUACUGCAUUUGACUAGAGAA hit 564 : 111589 111482 (rev) 45.74 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59