Params: ./cmzasha --no-stderr --filter 150 27.9 Rfam/cm/RF00019.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00019_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin Build: release Host: xmen.cs.washington.edu pid: 16041 ----cmFile: Rfam/cm/RF00019.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43618,sp|L41730.1|CECSCR Caenorhabditis elegans ceY small cytoplasmic RNA gene. ----isReversed: 0 ----hitSequence: GCUCGGUCCGAGUUUCAUGGUCUCCAAUGUGUGUGUGUGUGUGUUUUCUUUAGGAACCUCGGUUCCAACCUCAUCUUGACCUUGAAACUACUUUGACCGCUCCU hit 0 : 373 476 (fwd) 27.91 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G::::GUCCG ::::U::+ +++++CAA U+ UG+ U ++ U+ UUUC UA 373 GCUCGGUCCG---AGUUUCAUGGUCUCCAA-UGUGUGUGUGUGUGUGUUUUCUUUAGgaa 428 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + C ++U C+ +UCU+ +CC ::A:::: + UUGAC::::C U 429 cCUCGGUUCCAaccucAUCUUGACCUUGAAACUACU--UUGACCGCUCCU 476 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44221,sp|U58750.1|CEF55G1 Caenorhabditis elegans cosmid F55G1, complete sequence. ----isReversed: 0 ----hitSequence: GCUCGGUCCGAGUUUCAUGGUCUCCAAUGUGUGUGUGUGUGUGUUUUCUUUAGGAACCUCGGUUCCAACCUCAUCUUGACCUUGAAACUACUUUGACCGCUCCU hit 1 : 35336 35439 (fwd) 27.91 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G::::GUCCG ::::U::+ +++++CAA U+ UG+ U ++ U+ UUUC UA 35336 GCUCGGUCCG---AGUUUCAUGGUCUCCAA-UGUGUGUGUGUGUGUGUUUUCUUUAGgaa 35391 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + C ++U C+ +UCU+ +CC ::A:::: + UUGAC::::C U 35392 cCUCGGUUCCAaccucAUCUUGACCUUGAAACUACU--UUGACCGCUCCU 35439 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #2599,sp|AB054536.1|AB054536 Pan troglodytes LTB, TNF alpha, LTA, IKBL, ATP6G, BAT1, Patr-MIC and Patr-B genes, complete cds. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGUUUACAGCUAAUUGAUCACAACCAGUUAUAGAUGUCUUUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 2 : 92601 92697 (fwd) 46.47 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA :AGUG UUA+ C UAAUUGAU+ACA +AGUU+ AG++ UC 92601 GGCUGGUCUGAGUGCAGUGU-UUACAGC---UAAUUGAUCACAACCAGUUAUAGAUGUCU 92656 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCU+C+C+C CACU: U CACUUGACUAGCCUU 92657 UUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 92697 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #5706,sp|AB100082.1|AB100082 Pan troglodytes DNA, major histocompatibility complex class I region, section 1/6. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGUUUACAGCUAAUUGAUCACAACCAGUUAUAGAUGUCUUUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 3 : 92601 92697 (fwd) 46.47 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA :AGUG UUA+ C UAAUUGAU+ACA +AGUU+ AG++ UC 92601 GGCUGGUCUGAGUGCAGUGU-UUACAGC---UAAUUGAUCACAACCAGUUAUAGAUGUCU 92656 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCU+C+C+C CACU: U CACUUGACUAGCCUU 92657 UUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 92697 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #5708,sp|AB100084.1|AB100084 Pan troglodytes DNA, major histocompatibility complex class I region, section 3/6. ----isReversed: 0 ----hitSequence: GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGACUAGUCUU hit 4 : 179116 179224 (fwd) 56.58 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU GUCC AAG :AGUG:GUUAUC CAAUU+AUUG+U+A GU+AGUU+CAG+++ 179116 GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAGUUACAGAUUgaa 179173 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU: UGCACUUGAC AG:CUU 179174 cUCCUUGUUCUacucuuUACCUACUUCUCACUAUUGCACUUGACUAGUCUU 179224 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #5711,sp|AB100087.1|AB100087 Pan troglodytes DNA, major histocompatibility complex class I region, section 6/6. ----isReversed: 1 ----hitSequence: GGCUGGUCAGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCUUUUUUCCUUCUCCGCUCCCACUGCUUCACUUGACUAGCCUU hit 5 : 210616 210517 (rev) 69.21 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA GUAGUGG U++U+ACAA+UAAUUGAU+ACA +A UU+CAG+++UC 39986 GGCUGGUCAGAGUGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCU 40044 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+UUC UUCUCC C+CCCACUGCU CACUUGACUAGCCUU 40045 UUUUUCCUUCUCCGCUCCCACUGCUUCACUUGACUAGCCUU 40085 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7095,sp|AC091754.4|AC091754 Papio anubis clone RP41-384C24, complete sequence. ----isReversed: 1 ----hitSequence: AACUGGCCCGAGUGCAGUGGUGGUUACACUUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCCUCUCCACUUCCACUGCUUCACUGUAAGAGCCUA hit 6 : 85527 85428 (rev) 38.01 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 ::CU : CGA G:AGUGG U+ U+ACA UUAAUUGAU+ACA +AGUU+CAG+++U 106747 AACUGGCCCGAGUGCAGUGG-UGGUUACACUUAAUUGAUCACAACCAGUUACAGAUUUUU 106805 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UCUCC+C+ CCACU:CU CACU : AG::U 106806 UUGUUCCCUCUCCACUUCCACUGCUUCACUGUAAGAGCCUA 106846 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7128,sp|AC093135.2|AC093135 Pan troglodytes clone RP43-100O17, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 7 : 10087 9988 (rev) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 162019 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 162077 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 162078 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 162118 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7176,sp|AC099742.2|AC099742 Papio anubis clone RP41-167P22, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCCAAGUGCAGUGCUGUUUACAGCUAAUUGAUUACAACCAGUUACAGAUUUCUUCCUUCUCCAUUCCCACUACUUCCCUUGAUUAGUCUU hit 8 : 102210 102305 (fwd) 43.65 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUG :CC A G AGUG U++U+ACA +UAAUUGAUUACA +AGUU+CAG+++ C 102210 GGCUGGCCCAAGUGCAGUGC-UGUUUACAGCUAAUUGAUUACAACCAGUUACAGAUU-UC 102267 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU C UUCUCC+ +C CACU CU C+CUUG: UAG:CUU 102268 UU--CC-UUCUCCAUUCCCACUACUUCCCUUGAUUAGUCUU 102305 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7202,sp|AC120838.9|AC120838 Pan troglodytes clone ch251-239a19, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUGCAGUGGGGUGUACAAGGAAUUGAUUACAACCAGUUACAGGUUUCUUUGCUCCUUUUCCAUUUCCACUGCUGCUUCACUUGACUAGCCUU hit 9 : 99869 99767 (rev) 48.48 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA G:AGUGGG U U ACAA AAUUGAUUACA +AGUU+CAG ++UC 50424 GGCUGGUCUGAGUGCAGUGGGGUGU-ACAAGGAAUUGAUUACAACCAGUUACAGGUUUCU 50482 _________________>>>>>>>---...---->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 UUG UC UU UCC+ + CCACU:CUGC ACUUGACUAGCCUU 50483 UUGCUCCUUUUCCAUUUCCACUGCUGCuucACUUGACUAGCCUU 50526 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7256,sp|AC128639.13|AC128639 Papio anubis clone rp41-2d18, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCAAAGGUAGUUAGUUGAGUUAUCUCAGUUGGUUGUUCAUAGGCAGUAACAGAUCAAACUCCUUAUUCUUCUCUGUCCCCUCUUCUCAAUACUGCACUUGACUAGUCUA hit 10 : 157491 157376 (rev) 35.13 bits <<<<<<<<-----<<<.....<<<<___________________________________ 1 ggcugGUcCGAAggua.....gUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAgu 55 G:CUGGUCC AAGG:A :UG:GUUAUC CA UU+ UUG+U+A+AG +AGU +CAG+ 15841 GGCUGGUCCAAAGGUAguuagUUGAGUUAUCUCAGUUGGUUGUUCAUAGGCAGUAACAGA 15900 __....__________......__________>>>>>>>------->>>>>>>>:: 56 Aa....UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 + UCCUU UUCU U C+C C +C:CA:U:CUGCACUUGACUAG:CU 15901 UCaaacUCCUUAUUCUucucugUCCCCUCUUCUCAAUACUGCACUUGACUAGUCUA 15956 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7290,sp|AC140949.1|AC140949 Pan troglodytes BAC clone RP43-168N2 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUAUUCUUCCCCCCGCUUCUCACUGCUGCACUUGACUAGUCUG hit 11 : 15072 14961 (rev) 63.74 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU: GAAGGUAGUG:GUUAUC AAUU+AUUG+U+ACAGU+AGUU+CAG++ 178706 GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCACAGUCAGUUACAGAUCgaa 178765 .__________.__________......>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.UUCUccCCCC......ccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUCU+CCCCC :CACUGCUGCACUU:ACUAG:CU 178766 cUCCUUGUUCUaUUCUUCCCCCcgcuucUCACUGCUGCACUUGACUAGUCUG 178817 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7315,sp|AC142303.1|AC142303 Pan troglodytes chromosome 7 clone RP43-129L21, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 12 : 110627 110528 (rev) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 89044 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 89102 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 89103 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 89143 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7339,sp|AC142329.1|AC142329 Pan troglodytes chromosome UNK clone RP43-25D8, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUGCAGUGGUGUUUACAACUAAUUAAUCACAACCAUUUACAGAUUUAGUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 13 : 23506 23605 (fwd) 65.85 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:AGUGG U++U+ACAA+UAAUU AU+ACA +A UU+CAG+++U 23506 GGCUGGUCCAAGUGCAGUGG-UGUUUACAACUAAUUAAUCACAACCAUUUACAGAUUUAG 23564 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUGACUAGCCUU 23565 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 23605 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7339,sp|AC142329.1|AC142329 Pan troglodytes chromosome UNK clone RP43-25D8, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCUGAGUGCAGUGGUGUUUACAACGAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCCU hit 14 : 168852 168753 (rev) 65.69 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG:C GA G:AGUGG U++U+ACAA+ AAUUGAU+ACA +AGUU+CAG+++UC 19792 GGCUGGCCUGAGUGCAGUGG-UGUUUACAACGAAUUGAUCACAACCAGUUACAGAUUUCU 19850 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUUG:CUAGCC U 19851 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCCU 19891 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7372,sp|AC144428.1|AC144428 Pan troglodytes chromosome 7 clone RP43-2C19, complete sequence. ----isReversed: 1 ----hitSequence: GGUUAGCCCGAGUGCUAUAGUAUUUACAAUGAAUUGAUCACAACCAGUUACAGAUUUCUUUAUCACAUCUUCACUCCCACUGCUUCACUUGACUAGCCUU hit 15 : 155286 155187 (rev) 51.52 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:U:G:CCGA G:+:U:G U +U+ACAAU AAUUGAU+ACA +AGUU+CAG+++ C 52898 GGUUAGCCCGAGUGCUAUAG-UAUUUACAAUGAAUUGAUCACAACCAGUUACAGAUU-UC 52955 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+ UC+ +UCU+C+C+CC:A:+:CU CACUUG:C:A:CCUU 52956 UUUAUCAcAUCUUCACUCCCACUGCUUCACUUGACUAGCCUU 52997 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #41220,sp|U94704.1|GSU94704 Galago senegalensis Y5 small cytoplasmic RNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AGUUGGUCCGAAGGUUGUGGGUUAUCGUUAUUGAUUUAACAUUGUCUCCCCCCACACCCCCUCUUGACUAGCUUU hit 16 : 1 75 (fwd) 35.31 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G:UGGUCCGAAGG::GUGGGUUAUC UUA+ U+ UUU AA C 1 AGUUGGUCCGAAGGUUGUGGGUUAUCG-----------UUAU---UGAUUU----AA-CA 41 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +UCU CCCCCCAC::C +C CUUGACUA:C:UU 42 UU-GUCU------CCCCCCACACCCCCUCUUGACUAGCUUU 75 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #41221,sp|U94705.1|GSU94705 Galago senegalensis Y5 small cytoplasmic RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AGUUGGUCCGAAGGUUGUGGGUUAUCGUUAUUGAUUUAAUAUUGUCUCCCCCCACACCCCCUCUUGACUAGCUUU hit 17 : 86 160 (fwd) 34.05 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :G:UGGUCCGAAGG::GUGGGUUAUC UUA+ U+ UUU AA 86 AGUUGGUCCGAAGGUUGUGGGUUAUCG-----------UUAU---UGAUUU----AA-UA 126 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +UCU CCCCCCAC::C +C CUUGACUA:C:UU 127 UU-GUCU------CCCCCCACACCCCCUCUUGACUAGCUUU 160 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6760,sp|AC124787.5|AC124787 Mus musculus, clone RP24-395J18, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUACAAAGGGAGUGAGUUUUCUCAAUUGCUUGUUCACAGUCAGCUAUAGAUCGAACUGCUGGUCUGUGCUUUCCCCUCUUCUCACUACUGCACUUGACUACAGAU hit 18 : 105946 106055 (fwd) 37.00 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + UGGU:C AAGG AGUG:GUU+UC CAAUU+ UUG+U+ACAGU+AG U+ AG++ 105946 GGCUGGUACAAAGGGAGUGAGUUUUCUCAAUUGCUUGUUCACAGUCAGCUAUAGAUCgaa 106005 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CU+ +UCU U C+C C +C:CACU CUGCACUU:ACUA + U 106006 cUGCUG-GUCUgugcuuUCCCCUCUUCUCACUACUGCACUUGACUACAGAU 106055 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7305,sp|AC130205.3|AC130205 Mus musculus chromosome 1 clone RP24-430C1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUUGUCUAAAGAUAGUGAGUUAUAUCACCUGAUUGUUCACAGUCACUCACAGAUUGAAUUCCUAUUCUAUACAUUCCCUCCUUCUCACUACUCCAGUUGAUUAGAGAU hit 19 : 150414 150305 (rev) 28.06 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + CU UC AAG::AGUG:GUUAU CA +U+AUUG+U+ACAGU+A U +CAG+++ 15514 GGCUUGUCUAAAGAUAGUGAGUUAUAUCACCUGAUUGUUCACAGUCACUCACAGAUUgaa 15573 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU UUCU U C++CC +C:CACU::U+CA UUGA AG + U 15574 uUCCUA-UUCUauacauUCCCUCCUUCUCACUACUCCAGUUGAUUAGAGAU 15623 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24162,sp|AL606480.11|AL606480 Mouse DNA sequence from clone RP23-112C19 on chromosome 11 ----isReversed: 0 ----hitSequence: GGUUGAUCUGAAGAUAGUGAGUUAUCUCAACUGAUUGUUCAAAGUCAGUUCCAGAUUGCAUCCCUAUUCUACACUCCACACCCCCCUUUCCUGUUACUGUACUUAACCAGCCGU hit 20 : 12698 12811 (fwd) 29.02 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 GG:U::U GAAG:UAG :GUUAUC CAA+U+AUUG+U+A AGU+AGUU CAG+++ 12698 GGUUGAUCUGAAGAUAGUGAGUUAUCUCAACUGAUUGUUCAAAGUCAGUUCCAGAUUgca 12757 __________.......__________>>>>>>>---...---->>>>>>>>:: 58 UCcUUgUUCU.......UUCUccCCCCccAcugcUgc...aCUUgACuagccUU 101 UCC U UUCU + +CCCCC : CUG:U C ACUU A::A:CC U 12758 UCCCUAUUCUacacuccACACCCCCCUUUCCUGUUACuguACUUAACCAGCCGU 12811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24838,sp|AL669834.10|AL669834 Mouse DNA sequence from clone RP23-114O4 on chromosome 4 ----isReversed: 0 ----hitSequence: GGCUGGGCUGAGUACAGUGGCUGUUUCCAGCUAAUUGUUCACAACUAAUUACAGAUUUUUUUUUGUUCCUUCUCCAUUCCCACUGUUUCACCAGAACAGGUUG hit 21 : 21203 21305 (fwd) 35.92 bits <<<<<<<<-----<<<<<<<_____________________________________.._ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa..U 58 ++CU: :C GA ::AGUGG U++U++CA +UAAUUG+U+ACA UA UU+CAG+++ U 21203 GGCUGGGCUGAGUACAGUGGCUGUUUCCAGCUAAUUGUUCACAACUAAUUACAGAUUuuU 21262 ___________________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +CCCACU::U CAC G: :AG++U 21263 UUUUGUUCCUUCUCCAUUCCCACUGUUUCACCAGAACAGGUUG 21305 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24939,sp|AL670035.15|AL670035 Mouse DNA sequence from clone RP23-295C20 on chromosome 4 ----isReversed: 0 ----hitSequence: AGCUGAUCCAAAGGUAGUGAGUUAUCUCAAUGGAUGGUUCACAAUCAGUUACAGAUUAAACUUCCUUCCUCCUCACUGCUGCACUUGACUAGAGAU hit 22 : 96985 97080 (fwd) 46.46 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : CUG:UCC AAGGUAGUG:GUUAUC CAAU +AU G+U+ACA U+AGUU+CAG+++ 96985 AGCUGAUCCAAAGGUAGUGAGUUAUCUCAAUGGAUGGUUCACAAUCAGUUACAGAUU-AA 97043 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUC U+CC CC:CACUGCUGCACUUGA:UAG : U 97044 AC-UUCC---UUCCUCCUCACUGCUGCACUUGACUAGAGAU 97080 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25009,sp|AL671140.12|AL671140 Mouse DNA sequence from clone RP23-80N18 on chromosome 4 ----isReversed: 0 ----hitSequence: AGCUGGUCCUAAGGUAGUGCGUUGUCUCAAUUGAUUGCUCAGUCAGUUACACAUUGAACUCCUUCCUACUCUAUGCUUUCCCUCCUUCUCACUACUGCGCUUGACUAGAGCU hit 23 : 20804 20915 (fwd) 39.98 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 : CUGGUCC AAGG:AGUG GUU UC CAAUU+AUUG U+A GU+AGUU+CA++++ 20804 AGCUGGUCCUAAGGUAGUGCGUUGUCUCAAUUGAUUGCUCA--GUCAGUUACACAUUgaa 20861 .....__________......__________>>>>>>>------->>>>>>>>:: 58 .....UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU UCU U C++CC +C CACU:CUGC CUUGACUAG : U 20862 cuccuUCCUA-CUCUaugcuuUCCCUCCUUCUCACUACUGCGCUUGACUAGAGCU 20915 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #54168,sp|U34825.1|MM34825 Mus musculus Y1 scRNA (mY1) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUGUUCUACACUUUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU hit 24 : 325 434 (fwd) 75.45 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGAAGG:AGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG+++ 325 GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUgaa 384 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+ UUCU U C+CCC +C:CACU:CUGCACUUGACUAG:CUU 385 cUCCUG-UUCUacacuuUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU 434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #54169,sp|U34826.1|MM34826 Mus musculus Y3 scRNA (mY3) gene. ----isReversed: 0 ----hitSequence: GGUUGGUCCGAGAGUAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU hit 25 : 282 381 (fwd) 73.46 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:U:GUCCGA +GUAGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 282 GGUUGGUCCGAGAGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 340 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC C+CCCACUGCU CACUUGAC:A:CCUU 341 UUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU 381 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #54170,sp|U34827.1|MM34827 Mus musculus Y3 scRNA (mY3) RNA, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGGUCCGAGAGUAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU hit 26 : 1 100 (fwd) 73.46 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG:U:GUCCGA +GUAGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 1 GGUUGGUCCGAGAGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 59 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC C+CCCACUGCU CACUUGAC:A:CCUU 60 UUGUUCCUUCUCCGCUCCCACUGCUUCACUUGACCAGCCUU 100 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #54171,sp|U34828.1|MM34828 Mus musculus Y1 scRNA (mY1) RNA, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUGUUCUACACUUUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU hit 27 : 1 110 (fwd) 75.45 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCCGAAGG:AGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG+++ 1 GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUgaa 60 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+ UUCU U C+CCC +C:CACU:CUGCACUUGACUAG:CUU 61 cUCCUG-UUCUacacuuUCCCCCCUUCUCACUACUGCACUUGACUAGUCUU 110 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #68868,sp|X13624.1|MMROMY1P Mouse my1 pseudogene for small cytoplasmic Ro RNA ----isReversed: 0 ----hitSequence: GGCUGGCCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUGAACUCCUGUUUUACGCUUUGCCCCCUCUCACUCCUGCACUUGAACUCGUCUA hit 28 : 135 244 (fwd) 57.22 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C GG:CCGAAGG:AGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG+++ 135 GGCUGGCCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUUgaa 194 .__________....__________>>>>>>>------->>.>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgA.CuagccUU 101 UCCU++UU + UU +CCCC+C:CACU:CUGCACUUG: CU G:CU 195 cUCCUGUUUUAcgcuUUGCCCCCUCUCACUCCUGCACUUGAaCUCGUCUA 244 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21713,sp|X69719.1|RNY1A R.norvegicus gene for Y1 small cytoplasmic RNA ----isReversed: 0 ----hitSequence: GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUGAACUCCUGUUCUAUACUUUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU hit 29 : 5 114 (fwd) 50.76 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +++UGGU: GAAGG+AGUG:GUUAUC CAAUU+AUU +U+ACAGU+ G U+CAG+++ 5 GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUgaa 64 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+ UUCU UU +C C +C:CACU+CUGCAC U:ACUA+++ U 65 cUCCUG-UUCUauacuuUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU 114 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21714,sp|L07871.1|RNY1RNAX Rat rinucleoprotein (Y1) gene. ----isReversed: 0 ----hitSequence: GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUGAACUCCUGUUCUAUACUUUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU hit 30 : 5 114 (fwd) 50.76 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +++UGGU: GAAGG+AGUG:GUUAUC CAAUU+AUU +U+ACAGU+ G U+CAG+++ 5 GGCUGGUUGGAAGGUAGUGAGUUAUCUCAAUUGAUUAUUCACAGUCCGCUACAGAUUgaa 64 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCU+ UUCU UU +C C +C:CACU+CUGCAC U:ACUA+++ U 65 cUCCUG-UUCUauacuuUUUCCACUUCUCACUUCUGCACAUGACUAAGGAU 114 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43762,sp|L27530.1|IIY3A Iguana small cytoplasmic RNA (Y3). ----isReversed: 0 ----hitSequence: GGCUGGUCCGAUUGCAGUGGUACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCUUUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCU hit 31 : 1 99 (fwd) 69.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCCGA G:AGUGG U U+A AAUUAAUUGAU+ACAGU+AGUU+CAG ++UC 1 GGCUGGUCCGAUUGCAGUGG-UACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCU 59 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUUCUCC+C+CCCACU:CU CACUUGACUAG:CU 60 UUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCU- 99 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43763,sp|L27532.1|IIY3C Iguana small cytoplasmic RNA (Y3) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAUUGCAGUGGUACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCUUUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCUU hit 32 : 94 193 (fwd) 74.04 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCCGA G:AGUGG U U+A AAUUAAUUGAU+ACAGU+AGUU+CAG ++UC 94 GGCUGGUCCGAUUGCAGUGG-UACUUAUAAUUAAUUGAUCACAGUCAGUUACAGGUUUCU 152 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUCUUUCUCC+C+CCCACU:CU CACUUGACUAG:CUU 153 UUGUUCUUUCUCCACUCCCACUGCUUCACUUGACUAGUCUU 193 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43764,sp|L27534.1|IIY4A Iguana small cytoplasmic RNA (Y4) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAAGUAGUGGGUUAUCACAGAAAUUAUUACAGUUAGUUUCACUAACCUUUCUAAGUUCCACCCCACUGCUAACCUUGACUGGUCUU hit 33 : 95 190 (fwd) 69.91 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:C:GGUCCGAA+GUAGUGGGUUAUCACA AA U AUUACAGUUAGUUUCA+UAA CC 95 GGCUGGUCCGAAAGUAGUGGGUUAUCACA--GAAAUUAUUACAGUUAGUUUCACUAA-CC 151 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+ U++ U+CC CCCCACUGCU ++CUUGACU:G:CUU 152 UUUCUAAg---UUCCACCCCACUGCUAACCUUGACUGGUCUU 190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43765,sp|L27536.1|IIY4C Iguana small cytoplasmic RNA (Y4) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAAGUAGUGGGUUAUCACAGAAAUUAUUACAGUUAGUUUCACUAACCUUUCUAAGUUCCACCCCACUGCUAACCUUGACUGGUCUU hit 34 : 95 190 (fwd) 69.91 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:C:GGUCCGAA+GUAGUGGGUUAUCACA AA U AUUACAGUUAGUUUCA+UAA CC 95 GGCUGGUCCGAAAGUAGUGGGUUAUCACA--GAAAUUAUUACAGUUAGUUUCACUAA-CC 151 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+ U++ U+CC CCCCACUGCU ++CUUGACU:G:CUU 152 UUUCUAAg---UUCCACCCCACUGCUAACCUUGACUGGUCUU 190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #43766,sp|L27537.1|IIY4D Iguana small cytoplasmic RNA (Y4). ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAAGUAGUGGGUUAUCACAGAAAUUAUUACAGUUAGUUUCACUAACCUUUCUAAGUUCCACCCCACUGCUAACCUUGACUGGUCUU hit 35 : 1 96 (fwd) 69.91 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:C:GGUCCGAA+GUAGUGGGUUAUCACA AA U AUUACAGUUAGUUUCA+UAA CC 1 GGCUGGUCCGAAAGUAGUGGGUUAUCACA--GAAAUUAUUACAGUUAGUUUCACUAA-CC 57 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+ U++ U+CC CCCCACUGCU ++CUUGACU:G:CUU 58 UUUCUAAg---UUCCACCCCACUGCUAACCUUGACUGGUCUU 96 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #51910,sp|L15431.1|XLSCRNAY3 Xenopus laevis (clone pB1) small cytoplasmic RNA (Y3) gene. ----isReversed: 0 ----hitSequence: GGCUGGUCCGAAGGCAGUGGUUGCCACCAUUAAUUGAUUACAGACAGUUACAGACUUCUUUGUUCUUCUCCCCUCCCACUGCUUCCCUUGACUAGCCUU hit 36 : 36 134 (fwd) 76.39 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCCGAAGG:AGUGG UU +CAC AUUAAUUGAUUACAG +AGUU+CAG+ +UC 36 GGCUGGUCCGAAGGCAGUGG-UUGCCACCAUUAAUUGAUUACAGACAGUUACAGACUUCU 94 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCCCC+CCCACU:CU C+CUUGACUAGCCUU 95 UUGUUC-UUCUCCCCUCCCACUGCUUCCCUUGACUAGCCUU 134 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #51911,sp|L15432.1|XLSCRNAY4 Xenopus laevis (clone pB2) small cytoplasmic RNA (xY4) gene. ----isReversed: 0 ----hitSequence: GGUUGGUCCGAAAGUUGUGGGUUAUCCAAAUCAUUCAGUUAGUAUCACUAACCUUCUAUUUCACCCCACUGCUGACCUUGACUGGCCAA hit 37 : 36 124 (fwd) 47.34 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GG::GGUCCGAA+GU+GUGGGUUAUC+ AA U AUU GUUAGU UCA+UAA CC 36 GGUUGGUCCGAAAGUUGUGGGUUAUCC-----AAAUCAUUCA-GUUAGUAUCACUAA-CC 88 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU U+ U+ C CCCCAC+GCUG++CUUGACU::CC 89 UU-CUA----UUUCACCCCACUGCUGACCUUGACUGGCCAA 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #20,sp|AB000878.1|AB000878 Homo sapiens genomic DNA for centromeric end of MHC class I region on chromosome 6, cosmid clone: TY2A9. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGUUUUUGUUUCAUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 38 : 14612 14711 (fwd) 59.37 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GGCUGGUC GA :AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+ AG++ U 14612 GGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGuUU 14670 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC +UCU+C+C+CCCACU: U CACUUGACUAGCCUU 14671 UUGUUUC-AUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 14711 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #23,sp|AB000882.1|AB000882 Homo sapiens genomic DNA for centromeric end of MHC class I region on chromosome 6. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGUUUUUGUUUCAUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 39 : 67188 67287 (fwd) 59.37 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GGCUGGUC GA :AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+ AG++ U 67188 GGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGuUU 67246 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC +UCU+C+C+CCCACU: U CACUUGACUAGCCUU 67247 UUGUUUC-AUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 67287 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2352,sp|AB023051.1|AB023051 Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:876L4. ----isReversed: 0 ----hitSequence: GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU hit 40 : 68790 68898 (fwd) 52.53 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU UCC AAG :AGUG:GUUAUC CAAUU+AUUG+U+A GU+AGUU+CAG+++ 68790 GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAGUUACAGAUUgaa 68847 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU: UGCACUUGA AG:CUU 68848 cUCCUUGUUCUacucuuUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU 68898 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2359,sp|AB023058.1|AB023058 Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:950A3. ----isReversed: 1 ----hitSequence: GGCUGGUCAGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCUUUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU hit 41 : 74394 74295 (rev) 68.06 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA GUAGUGG U++U+ACAA+UAAUUGAU+ACA +A UU+CAG+++UC 40057 GGCUGGUCAGAGUGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCU 40115 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+UUC UUCUCC C+CCCACUGCU ACUUGACUAGCCUU 40116 UUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU 40156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #2766,sp|AB026898.1|AB026898 Homo sapiens DNA, DLEC1 to ORCTL4 gene region, section 1/2 (DLEC1, ORCTL3, ORCTL4 genes, complete cds). ----isReversed: 1 ----hitSequence: GGCUGGUCCAGAGGUAGUGAGUUAUCUUGAUUGUUCAGUUACAGAUCAAACUCCAUGUUCUACUCUUUACCCCCUUCUUACUUCUACACUUGACUAGUCAA hit 42 : 73128 73028 (rev) 30.80 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGUCC AGG+AGU :GUUAUC U+AUUG+U +AGUU+CAG++ 196873 GGCUGGUCCAGAGGUAGUGAGUUAUCU----UGAUUGUU------CAGUUACAGAUCaaa 196922 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCC UGUUCU U C+CCC +C: ACU+CU CACUUGACUAG:C 196923 cUCCAUGUUCUacucuuUACCCCCUUCUUACUUCUACACUUGACUAGUCAA 196973 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #4334,sp|AB043547.1|AB043547 Homo sapiens gene for SMAD4, partial cds. ----isReversed: 1 ----hitSequence: UACUGGUCCAAAGGUAAUGAUUAACCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUCAGCUCCUUGUUCUACUCUUUACCCCCUUCUCACUAUUGUGCUUGACUAGUCAA hit 43 : 48716 48606 (rev) 44.05 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAG :A:UG:+U A+C CAAU +AUUG+U+ACAGU+AGUU+CAG+++ 112105 UACUGGUCCAAAGGUAAUGAUUAACCUCAAUAGAUUGUUCACAGUCAGUUACAGAUUcag 112164 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+CCC +C:CA:U: UG CUUGACUAG:: 112165 cUCCUUGUUCUacucuuUACCCCCUUCUCACUAUUGUGCUUGACUAGUCAA 112215 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #5908,sp|AB063285.1|AB063285 Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds. ----isReversed: 0 ----hitSequence: GGCUAGUCUGAAGGUAGCAAGUUAUCUCAAUUGAUUGUUCAUGGUCAGUUACAGAUUGAACUCUUUGUUUUAUUCUUUUCCCCCUUCUCACUACUGCAUUUGACUAAUCAU hit 44 : 8335 8445 (fwd) 52.65 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:+U:GUC GAAGG:AG:::GUUAUC CAAUU+AUUG+U+A++GU+AGUU+CAG+++ 8335 GGCUAGUCUGAAGGUAGCAAGUUAUCUCAAUUGAUUGUUCAUGGUCAGUUACAGAUUgaa 8394 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUU U UUC+CCC +C:::CU:CUGCA UUGAC:A+:C U 8395 cUCUUUGUUUUauucuuUUCCCCCUUCUCACUACUGCAUUUGACUAAUCAU 8445 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #8359,sp|AB088101.1|AB088101 Homo sapiens PRG1, FLOT1 genes for immediate early response 3, flotillin 1, complete cds. ----isReversed: 0 ----hitSequence: GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU hit 45 : 9930 10038 (fwd) 52.53 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU UCC AAG :AGUG:GUUAUC CAAUU+AUUG+U+A GU+AGUU+CAG+++ 9930 GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAGUUACAGAUUgaa 9987 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU: UGCACUUGA AG:CUU 9988 cUCCUUGUUCUacucuuUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU 10038 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9462,sp|AC002407.1|AC002407 Human Chromosome X, complete sequence. ----isReversed: 1 ----hitSequence: UGCUGGCCCUAAGGUAGUGAGUUACCUCAAUUGCUUGUUCACCAUCAGUUACAGGUCAAACUCCUUGUUCUACUCUUUCCACCCUUCUCACUACUGCACUGGACUAGGAAA hit 46 : 28932 28822 (rev) 43.70 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 :+CUGG:CC AAGG:AGUG:GUUA+C CAAUU+ UUG+U+AC U+AGUU+CAG + 66575 UGCUGGCCCUAAGGUAGUGAGUUACCUCAAUUGCUUGUUCACCAUCAGUUACAGGUCaaa 66634 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C CCC +C:CACU:CUGCACU G:CUAG+: 66635 cUCCUUGUUCUacucuuUCCACCCUUCUCACUACUGCACUGGACUAGGAAA 66685 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9491,sp|AC002461.2|AC002461 Homo sapiens BAC clone CTA-204I16 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GAAUGGUCCAAGUGCAGUAGUGUUUACAACUAAAUUGAUCACAAGCAGUUACAGAUUUCCUUGUUCCUUCUCCGCUUCCACUGUUGCAUUUGACUAGACUU hit 47 : 37862 37762 (rev) 49.67 bits <<<<<<<<-----<<<<<<<____________.___________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUU.aAuUGaUUAcAgUUAGUUUCAguAaUC 59 G::UGGUCC A :AGU:G U++U+ACAA+U AAUUGAU+ACA +AGUU+CAG+++UC 159412 GAAUGGUCCAAGUGCAGUAG-UGUUUACAACUaAAUUGAUCACAAGCAGUUACAGAUUUC 159470 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUC UUCUCC C+ C:ACU: UGCA UUGACUA::CUU 159471 CUUGUUCCUUCUCCGCUUCCACUGUUGCAUUUGACUAGACUU 159512 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9533,sp|AC002522.2|AC002522 Homo sapiens Chromosome 22 Cosmid Clone 46a9 In DGCR Region, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCAAACUCCUUGUUGUACUCUUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU hit 48 : 28728 28837 (fwd) 50.05 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C GGUC GAAGG: GUG:GU AUC C AUU+AUUG+U+ACAGU+AGU +CAG++ 28728 GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCaaa 28787 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUU U UU +CC +C:CAC :CUGCACUUGACU G:CUU 28788 cUCCUUGUUGUacucuUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU 28837 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9544,sp|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence. ----isReversed: 0 ----hitSequence: GGCCGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUGGAACACCUCGUUCUACUCUUUCCCGCCUUCUCACUGCUGCACUUGAACAGUCUU hit 49 : 126515 126625 (fwd) 56.95 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C:: UC GAAGGUAGUG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+CAG++ 126515 GGCCGGUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUGgaa 126574 .__________.....________.__>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCC.CCccAcugcUgcaCUUgACuagccUU 101 CCU GUUCU UUC+C CC +C:CACUGCUGCACUUGA ::G:CUU 126575 cACCUCGUUCUacucuUUCCCGCCuUCUCACUGCUGCACUUGAACAGUCUU 126625 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9567,sp|AC002980.1|AC002980 Homo sapiens Xp22 BAC 620F15 (Genome Systems BAC library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCCCAAAGGUAAUGAAUUAUCUCAAUUGACUGUUCACAGAUUAAACUCCUUGUUCUACCCUUUCCCCGCUUCUCACCACUGAAUUUGACUAGUCUU hit 50 : 131345 131245 (rev) 35.92 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 G:CUGG:CC AAGG: :UG: UUAUC CAAUU+A UG+U+AC + UU+ AA UC 10131 GGCUGGCCCAAAGGUAAUGAAUUAUCUCAAUUGACUGUUCAC---AGAUUA----AAcUC 10183 ________......__________>>>>>>>------->>>>>>>>:: 60 cUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CUUGUUCU U C+C C +C:CA: :CUG+A UUG:CUAG:CUU 10184 CUUGUUCUacccuuUCCCCGCUUCUCACCACUGAAUUUGACUAGUCUU 10231 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9568,sp|AC002981.1|AC002981 Homo sapiens Xp22 BAC GS279A12 (Genome Systems) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAGAGAUUGAAUUUCUUGUUCUACUCUUUUCCACAUUCUCAGUACUACACUUGACUAGUUUU hit 51 : 29919 30029 (fwd) 57.87 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUG:UC GAAGG:A UG:GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+ AG+++ 29919 GGCUGAUCUGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAGAGAUUgaa 29978 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CUUGUUCU UUC+ C+ +C:CA U:CU CACUUGA:UAG:+UU 29979 uUUCUUGUUCUacucuuUUCCACAUUCUCAGUACUACACUUGACUAGUUUU 30029 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9657,sp|AC003657.1|AC003657 Homo sapiens Xp22 BAC GS-602M16 (Genome Systems Human BAC library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUACAGUAGUGUUUACGACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCUCUCCCACUGCUUCAGUUGGCUAGCCUU hit 52 : 30085 29986 (rev) 51.36 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG C GA ::AGU:G U++U+AC A+UAAUUGAU+ACA +AGUU+CAG+++UC 35632 GGCUGGUCUGAGUACAGUAG-UGUUUACGACUAAUUGAUCACAACCAGUUACAGAUUUCU 35690 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC C+CC:ACU::U CA UUG CUAGCCUU 35691 UUGUUCCUUCUCCUCUCCCACUGCUUCAGUUGGCUAGCCUU 35731 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9680,sp|AC003688.1|AC003688 Homo sapiens chromosome 17, clone hRPC.4_G_17, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAAGGUAGUGAAUUAUUUCAAUUGAUUGUUCACAGUCAGUUACAGACGGAACUUCUUUUUCCACUCUCACUGCUUUCUCACUACUGCAUCUGACUAGUCUU hit 53 : 68562 68453 (rev) 46.38 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUC GAAGG:AGUG: UUAU+ CAAUU+AUUG+U+ACAGU+AGUU+CAG+ 29556 AGCUGGUCUGAAGGUAGUGAAUUAUUUCAAUUGAUUGUUCACAGUCAGUUACAGACGgaa 29615 ..__________________....__>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCUUUCUccCC....CCccAcugcUgcaCUUgACuagccUU 101 UC UU+U C+ UCUC C +C:CACU:CUGCA UGACUAG::UU 29616 cuUCUUUUUCCACUCUCACUgcuuUCUCACUACUGCAUCUGACUAGUCUU 29665 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9695,sp|AC003959.1|AC003959 Homo sapiens chromosome 5, P1 clone 1029A7 (LBNL H15), complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUCUGAAGGUAGUGAAUUAUCUCAAUUGACUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUACUCUUUUCCCCCUUCUCACUACUGCCCUUGACUAGUCUU hit 54 : 67501 67609 (fwd) 58.27 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG:UC GAAGG:AGUG: UUAUC CAAUU+A U U+ACAGU+AGUU+CAG++ 67501 GGCUGAUCUGAAGGUAGUGAAUUAUCUCAAUUGACU--UCACAGUCAGUUACAGAUCgaa 67558 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CCC +C:CACU:CUGC+CUUGA:UAG:CUU 67559 cUCCUUGUUCUacucuuUUCCCCCUUCUCACUACUGCCCUUGACUAGUCUU 67609 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9726,sp|AC004000.1|AC004000 Human PAC clone RP3-404F18 from Xq23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAGUGGUGUUUACAAGUAAUUGACCACAAUCAGCUACAGAUUUCUUUGUUCCUUCCCACUCCCACUGCUUCACUUGACUUGCCCU hit 55 : 35676 35774 (fwd) 51.79 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC GGUC A G:AGUGG U++U+ACAA UAAUUGA +ACA U+AG U+CAG+++UC 35676 GGCUGGUCAAAGUGCAGUGG-UGUUUACAAGUAAUUGACCACAAUCAGCUACAGAUUUCU 35734 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U +CC+C+CCCACU:CU CACUUGACU GCC U 35735 UUGUUC-CUUCCCACUCCCACUGCUUCACUUGACUUGCCCU 35774 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9757,sp|AC004033.3|AC004033 Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCCAAAGUUAGCUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCAAACUCAUUCGUCUCUGUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA hit 56 : 20213 20321 (fwd) 40.57 bits <<<<<<<<-----<<<<.<<<_____________________________________.. 1 ggcugGUcCGAAgguag.UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUGG: C AAG::AG UG:GUUAU+ CA UU+AUUG+U+A+AGU+AGU +CAG++ 20213 GGCUGGGCCAAAGUUAGcUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCaa 20272 ..__________...__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UU +UCU U C+CCC +C:CACU::UGCACUU :CUAG:CU 20273 acUCAUUCGUCUcugUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA 20321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9757,sp|AC004033.3|AC004033 Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCCGAAGGUAGUGUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACUCCAGGUUCUACUUUUUCACCUUCUCACUACUGCAGUUGACUAGACUU hit 57 : 14366 14260 (rev) 36.52 bits <<<<<<<<-----<<<<..<<<______________________________________ 1 ggcugGUcCGAAgguag..UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaU 58 G :UGGUCCGAAGG:AG UG:GUUA+C CA UU+AUUG+U+ACAGU+A + ++A U 130991 GGUUGGUCCGAAGGUAGugUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACU 131050 _________....__________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CC +GUUCU UU + CC +C:CACU:CUGCA UUGACUA: CUU 131051 CCAGGUUCUacuuUUUCACCUUCUCACUACUGCAGUUGACUAGACUU 131097 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9853,sp|AC004166.12|AC004166 Homo sapiens Chromosome 7 BAC Clone 239c10, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 58 : 158851 158950 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 158851 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 158909 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 158910 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 158950 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9857,sp|AC004170.1|AC004170 Homo sapiens clone UWGC: y19x012 from 6p21, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAGAGUGUAGUGGUGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCUUUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU hit 59 : 11802 11703 (rev) 68.06 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA GUAGUGG U++U+ACAA+UAAUUGAU+ACA +A UU+CAG+++UC 27898 GGCUGGUCAGAGUGUAGUGG-UGUUUACAACUAAUUGAUCACAACCAAUUACAGAUUUCU 27956 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU+UUC UUCUCC C+CCCACUGCU ACUUGACUAGCCUU 27957 UUUUUCCUUCUCCGCUCCCACUGCUUUACUUGACUAGCCUU 27997 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9865,sp|AC004180.1|AC004180 Homo sapiens clone UWGC:M32A from 6p21, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGUGUACAACUAAUUGAUCACAACCAGUUAUAGAUGUCUUUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 60 : 15616 15712 (fwd) 47.84 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC GA :AGUG GU ACAA+UAAUUGAU+ACA +AGUU+ AG++ UC 15616 GGCUGGUCUGAGUGCAGUGUGU----ACAACUAAUUGAUCACAACCAGUUAUAGAUGUCU 15671 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCU+C+C+C CACU: U CACUUGACUAGCCUU 15672 UUGUUUCUUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 15712 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9968,sp|AC004461.3|AC004461 Homo sapiens Chromosome 22q11.2 Cosmid Clone 119f4 In DGCR Region, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCAAACUCCUUGUUGUACUCUUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU hit 61 : 15929 16038 (fwd) 50.05 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C GGUC GAAGG: GUG:GU AUC C AUU+AUUG+U+ACAGU+AGU +CAG++ 15929 GGCUGGUCUGAAGGUAGUGAGUCAUCUCGAUUGAUUGUUCACAGUCAGUAACAGAUCaaa 15988 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUU U UU +CC +C:CAC :CUGCACUUGACU G:CUU 15989 cUCCUUGUUGUacucuUUUCCCGUUCUCACGACUGCACUUGACUCGUCUU 16038 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #14,sp|AC004522.3|AC004522 Homo sapiens PAC clone RP4-604G5 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAGUGCUGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCUUUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA hit 62 : 96353 96254 (rev) 42.15 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU A G:AGUG U++U+ CAA AAUU AU+ACA +AGUU+CA ++ UC 3745 GGCUGGUCAAAGUGCAGUGC-UGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCU 3803 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC +C+C CACU:CU CACU ACUAGCCU 3804 UUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA 3844 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #45,sp|AC004562.1|AC004562 Homo sapiens chromosome 17, clone hRPC.34_M_24, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGAUAGCGAAGUAUCUCAACUGAUUGUUCACAGUUCGUUAAGGAUCUUACUCUUUGUUCUACAAUUCCCCCCUUCUCACUACUGCACUUGACUAAUAAA hit 63 : 71580 71689 (fwd) 41.10 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 :+UGGUC GAAG::AG:G: UAUC CAA+U+AUUG+U+ACAGUU GUU+ AG A+ 71580 GGCUGGUCUGAAGAUAGCGAAGUAUCUCAACUGAUUGUUCACAGUUCGUUA-AGGAUcuu 71638 ..__________.....__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU U C+CCC +C:C:CU::UGCACUUGACUA+: 71639 acUCUUUGUUCUacaauUCCCCCCUUCUCACUACUGCACUUGACUAAUAAA 71689 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #108,sp|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence. ----isReversed: 0 ----hitSequence: AAUUGGUCUAAGUAUAGUGGUGUUUAUAACUAAUUGAUCACAAGUGGUAACAGAUUUCUUUGUUCCUUUAGCAGUCCCACUGCUUCACCUGAAUAGUAAA hit 64 : 130374 130473 (fwd) 29.56 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :::UG UC A :UAGUGG U++U+A AA+UAAUUGAU+ACA U+GU +CAG+++UC 130374 AAUUGGUCUAAGUAUAGUGG-UGUUUAUAACUAAUUGAUCACAAGUGGUAACAGAUUUCU 130432 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UU C+ +CCCACUG:U CAC UGA UA::: 130433 UUGUUCCUUUAGCAGUCCCACUGCUUCACCUGAAUAGUAAA 130473 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #137,sp|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.117_B_12, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCUAGUGCAGUGGUGUUUACAACUAAUUCAUCACAACCAGUUAGAGAUUUCUUUCUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 65 : 55444 55543 (fwd) 63.66 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUCC A G:AGUGG U++U+ACAA+UAAUU AU+ACA +AGUU+ AG+++UC 55444 GGCUGGUCCUAGUGCAGUGG-UGUUUACAACUAAUUCAUCACAACCAGUUAGAGAUUUCU 55502 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU UUC UUCUCC+C+CCCACU:CU CACUUGACUAGCCUU 55503 UUCUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 55543 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #241,sp|AC004849.1|AC004849 Homo sapiens PAC clone RP4-659J6 from 7q33-q35, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUAUGGUGUUUAUAACUAUUUGAUCACAAACAAUUACAGAUUUCUUUGUUUCUUCUCCAUCUCACUGCUUCACUUGACUAGAGAA hit 66 : 92263 92358 (fwd) 32.98 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 + CUGGUC GA GUA UG GU++U+A AA+UA UUGAU+ACA +A UU+CAG+++UC 92263 GGCUGGUCUGA--GUA-UG-GUGUUUAUAACUAUUUGAUCACAAACAAUUACAGAUUUCU 92318 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU UUCUCC+ C CACUGCU CACUUGACUAG + 92319 UUGUUUCUUCUCCAUCU-CACUGCUUCACUUGACUAGAGAA 92358 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #259,sp|AC004867.5|AC004867 Homo sapiens PAC clone RP4-728P19 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 67 : 70782 70683 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 72956 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 73014 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 73015 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 73055 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #268,sp|AC004878.3|AC004878 Homo sapiens PAC clone RP4-754G14 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 68 : 8195 8294 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 8195 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 8253 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 8254 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 8294 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #268,sp|AC004878.3|AC004878 Homo sapiens PAC clone RP4-754G14 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 69 : 36220 36319 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 36220 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 36278 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 36279 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 36319 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #272,sp|AC004882.3|AC004882 Homo sapiens PAC clone RP1-76B20 from 22, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCCAAGUGCAGCAGUGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCUUUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC hit 70 : 105364 105463 (fwd) 35.39 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUCC A G:AG::G U++U A+UAA UGAU+ACA +AG U+CAG+++UC 105364 GGCUAGUCCAAGUGCAGCAG-UGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCU 105422 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+C+CC::CU:C C CUUGAC:AGCCU 105423 UUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC 105463 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #285,sp|AC004895.2|AC004895 Homo sapiens PAC clone RP4-810E6 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCGGGCAUGGUGGUGUUCAUAGCUAAUCAUCAGUUACAGAUUCCUUGGUUCCUUCCCCACUCCCACUGCUUCACUUGACUAGCCUG hit 71 : 20977 21068 (fwd) 33.26 bits <<<<<<<<-----<<<..<<<<______________________________________ 1 ggcugGUcCGAAggua..gUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaU 58 GGCUGG:C G G:A GUGG U++UCA UA U AU+A+ +AGUU+CAG++++ 20977 GGCUGGCCGG---GCAugGUGG-UGUUCA----UAGCUAAUCAU---CAGUUACAGAUUC 21025 ___________________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 C U+GUUC UUC+CC+C+CCCACU:CU CACUUG:CUAGCCU 21026 CUUGGUUCCUUCCCCACUCCCACUGCUUCACUUGACUAGCCUG 21068 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #294,sp|AC004904.1|AC004904 Homo sapiens PAC clone RP5-828F13 from 1, complete sequence. ----isReversed: 0 ----hitSequence: GCCUUCUCAGUGCAGUGGUAUUGACAUUAACAACUAAUUGAUCACAAGCAGUUACAGAUUUAUUUGUUCCUUCUCCACUCCCACUCCUUCACUUGACUAUCCUU hit 72 : 117302 117405 (fwd) 34.18 bits <<<<<<<<-----<<<<<<<_.__...____.____________________________ 1 ggcugGUcCGAAgguagUggG.UU...AUCa.CAAUUaAuUGaUUAcAgUUAGUUUCAgu 55 G U UC A G AGUGG+ UU AU+A CAA+UAAUUGAU+ACA +AGUU+CAG+ 117302 GCCUUCUC--AGUGCAGUGGUaUUgacAUUAaCAACUAAUUGAUCACAAGCAGUUACAGA 117359 ______________________>>>>>>>------->>>>>>>>:: 56 AaUCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 ++U UUGUUC UUCUCC+C+CCCACU CU CACUUGA A CUU 117360 UUUAUUUGUUCCUUCUCCACUCCCACUCCUUCACUUGACUAUCCUU 117405 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #353,sp|AC004966.2|AC004966 Homo sapiens PAC clone RP5-1107K15 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAGAUGGAGUGAGUUAUCUCAAUUGAUUGUUCACAAGCAGUUACUGAUGGAACUGCUGGUUCUGUUCUUUUCCCACUUCUCACUACUGCAUUUGUCUAGUUAA hit 73 : 60153 60263 (fwd) 46.72 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGG CC A G AGUG:GUUAUC CAAUU+AUUG+U+ACA +AGUU+C G++ 60153 GGCUGGUCCAGAUGGAGUGAGUUAUCUCAAUUGAUUGUUCACAAGCAGUUACUGAUGgaa 60212 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U CU+GUUCU UUC+C C +C:CACU CUGCA UUG CUAG:+ 60213 cUGCUGGUUCUguucuuUUCCCACUUCUCACUACUGCAUUUGUCUAGUUAA 60263 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #364,sp|AC004977.2|AC004977 Homo sapiens PAC clone RP5-1152C17 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAGUGCUGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCUUUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA hit 74 : 41723 41624 (rev) 42.15 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGU A G:AGUG U++U+ CAA AAUU AU+ACA +AGUU+CA ++ UC 64751 GGCUGGUCAAAGUGCAGUGC-UGUUUUCAAACAAUUUAUCACAACCAGUUACAAAUGUCU 64809 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUC +C+C CACU:CU CACU ACUAGCCU 64810 UUGUUCCUUCUCUACUCCCACUGCUUCACUCAACUAGCCUA 64850 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #366,sp|AC004980.5|AC004980 Homo sapiens PAC clone RP5-1158B1 from 7q11.2-q22, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 75 : 9646 9745 (fwd) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 9646 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 9704 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 9705 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 9745 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #419,sp|AC005037.2|AC005037 Homo sapiens BAC clone RP11-469M7 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAUGGUAGUGGGUUAUCAGAACUUAAUAGUUAUUAGUGUCACGAAAAUUAGUAUACAACCCCUACCGCUAAAUUUGACUGGCGUU hit 76 : 151239 151332 (fwd) 31.31 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUCC A GGU GU GGUUAUCA AA+U A U UUA+ UAGU UCA+ AA 151239 GGCUGGUCCAAUGGUAGUGGGUUAUCAGAACUUAAUAGUUAU---UAGUGUCACGAA-AA 151294 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UU +U+U C +CCCC AC GCU +A UUGACU:GC+UU 151295 UUAGUAU---ACAACCCCUACCGCUAAAUUUGACUGGCGUU 151332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #425,sp|AC005043.2|AC005043 Homo sapiens BAC clone RP11-576N21 from 1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCCAAUGGUAGUGGGUUAUCAGAACUUAUCAACAUUAGUGUUGCUAAAGUUGGUAUACAACCCCCCACUGCGAAAUUUGGCUGGCUUU hit 77 : 153390 153483 (fwd) 34.14 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GG:CC A GGUAGUGGGUUAUCA AA U AU+A UUAGU U +UAA 153390 GGCUGGCCCAAUGGUAGUGGGUUAUCA----GAACUUAUCAACAUUAGUGUUGCUAA-AG 153444 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCCCCACUGC +A UUG:CU:GC+UU 153445 UUGGUAUa---CAACCCCCCACUGCGAAAUUUGGCUGGCUUU 153483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #430,sp|AC005049.2|AC005049 Homo sapiens BAC clone CTB-23I15 from 7, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGCCCGAAUGCAGCGGUGGUUACAGUUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCGA hit 78 : 32828 32927 (fwd) 47.30 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU G:CCGAA G:AG:GG U+ U+ACA UUAAUUGAU+ACA +AGUU+CAG+++U 32828 AGCUGGCCCGAAUGCAGCGG-UGGUUACAGUUAAUUGAUCACAACCAGUUACAGAUUUUU 32886 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCC:CU:CU CACU G:C AGC: 32887 UUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCGA 32927 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #440,sp|AC005064.3|AC005064 Homo sapiens clone CTB-107G13, complete sequence. ----isReversed: 1 ----hitSequence: UCCUGGUCCAAGUCCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACUGAUUUCUUUGUUCCUUCAUUUCCACUGCUUCACUUGACUAGCCUA hit 79 : 33168 33072 (rev) 49.83 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : CUGGUCC A :AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+C G+++UC 86317 UCCUGGUCCAAGUCCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACUGAUUUCU 86375 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC U+C+ + CCACU: U CACUUGACUAG :U 86376 UUGUUCC---UUCAUUUCCACUGCUUCACUUGACUAGCCUA 86413 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #440,sp|AC005064.3|AC005064 Homo sapiens clone CTB-107G13, complete sequence. ----isReversed: 1 ----hitSequence: UCCUGGUCCAAGUGCAGUGGUAUUUACAACUGAUUUAUACAACCAGUUACUGAUUUCUUUGUUCCUUCUACAUUCCCACUGCUUCACUUGACUAGCCUA hit 80 : 31637 31539 (rev) 49.56 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 : CUGGUCC A G:AGUGG U +U+ACAA+U+AUU AU ACA +AGUU+C G+++UC 87848 UCCUGGUCCAAGUGCAGUGG-UAUUUACAACUGAUUUAU-ACAACCAGUUACUGAUUUCU 87905 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+ +CCCACU:CU CACUUGACUAG :U 87906 UUGUUCCUUCUACAUUCCCACUGCUUCACUUGACUAGCCUA 87946 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #446,sp|AC005071.2|AC005071 Homo sapiens clone RG161A02, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGCAUA hit 81 : 128183 128084 (rev) 47.00 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GCUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 81200 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 81258 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAGC U 81259 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGCAUA 81299 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #450,sp|AC005076.2|AC005076 Homo sapiens BAC clone CTA-227L24 from 7q21.1-q21.2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCCAGUGCAGUGGUGUUGACAACUAAUUGAUCAUAGCCCGUUACAGAUUUCUUUGCUCCUUCUCCAAUCUCCCUGCUUCACUUGACUGGCCUA hit 82 : 68673 68574 (rev) 53.34 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGC:GGUCC A G:AG G U++U ACAA+UAAUUGAU+A+AG + GUU+CAG+++UC 89474 GGCUGGUCCCAGUGCAGUGG-UGUUGACAACUAAUUGAUCAUAGCCCGUUACAGAUUUCU 89532 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG UC UUCUCC+ +C C CU:CU CACUUGACU:GCCU 89533 UUGCUCCUUCUCCAAUCUCCCUGCUUCACUUGACUGGCCUA 89573 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #461,sp|AC005088.3|AC005088 Homo sapiens BAC clone CTA-313A17 from 7q22-q31.1, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 83 : 128945 129044 (fwd) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 128945 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 129003 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 129004 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 129044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #469,sp|AC005098.2|AC005098 Homo sapiens BAC clone CTA-350L10 from 7q11.2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 84 : 170871 170970 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 170871 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 170929 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 170930 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 170970 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #641,sp|AC005346.1|AC005346 Homo sapiens chromosome 16, cosmid clone 2H2 (LANL), complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCCAAGCACAGUGGUGUUCACAACGAAUUGAUCACAGCCAGGUAGAAUUCUUCAUUCUUUCUCCAGUCCUACUGCUUUGCUUGACCAGCCUU hit 85 : 36901 36804 (rev) 36.02 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU:GUCC A ::AGU G U++UCACAA+ AAUUGAU+ACAG +AG U+ G+A+UC 1949 AGCUGGUCCAAGCACAGUGG-UGUUCACAACGAAUUGAUCACAGCCAGGUA--GAAUUCU 2005 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UUCUUUCUCC+ +CC ACU::U CUUGAC:AGC:UU 2006 UCAUUCUUUCUCCAGUCCUACUGCUUUGCUUGACCAGCCUU 2046 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #693,sp|AC005409.1|AC005409 Homo sapiens chromosome 10 clone 14951 map 10, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAUGGUAGUCAGUUAUCUCAAUUGAUUGCUCACAGUCAGUUACAGGUCAAACUCCUUGUUCUUCUCUUUUCCCCCCUCACUACUGUACUUGGCUAGUCUA hit 86 : 5761 5869 (fwd) 59.06 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG CC A GG:AGU :GUUAUC CAAUU+AUUG U+ACAGU+AGUU+CAG + 5761 GGCUGGUCCAAUGGUAGUCAGUUAUCUCAAUUGAUUGCUCACAGUCAGUUACAGGUCaaa 5820 .__________....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UU UCCCCCC: ACU:CUG ACUUG CUAG:CU 5821 cUCCUUGUUCUucucUUUUCCCCCCUCACUACUGUACUUGGCUAGUCUA 5869 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #699,sp|AC005477.1|AC005477 Homo sapiens PAC clone RP1-283M22 from 14, complete sequence. ----isReversed: 0 ----hitSequence: AACUGGUCCAAAGGUAAGAGGUAUCUCCAUUGAUUGUUCAGUCAGUUACAGAUCAAACUCCUUGCUCUACUUUUUUCUCCCUUCUCACUAGUGUACUUGACUAGUCUU hit 87 : 29987 30094 (fwd) 37.87 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUCC AAG :A G:G UAUC C AUU+AUUG+U+A GU+AGUU+CAG++ 29987 AACUGGUCCAAAGGUA-AGAGGUAUCUCCAUUGAUUGUUCA--GUCAGUUACAGAUCaaa 30043 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU UUCUCCC +C:C CU: UG ACUUGACUAG::UU 30044 cUCCUUGCUCUacuuuuUUCUCCCUUCUCACUAGUGUACUUGACUAGUCUU 30094 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #709,sp|AC005488.2|AC005488 Homo sapiens BAC clone RP11-313P13 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 88 : 148923 149022 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 148923 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 148981 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 148982 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 149022 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #709,sp|AC005488.2|AC005488 Homo sapiens BAC clone RP11-313P13 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 89 : 176899 176998 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 176899 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 176957 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 176958 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 176998 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #709,sp|AC005488.2|AC005488 Homo sapiens BAC clone RP11-313P13 from 7, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGCCCGAGUGCAGUGGUGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA hit 90 : 121249 121150 (rev) 45.62 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU G:CCGA G:AGUGG U+ U+ACA UUAAUUGAU+ACA A UU+CAG+++U 64489 AGCUGGCCCGAGUGCAGUGG-UGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUU 64547 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACU G:C AGC: 64548 UUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA 64588 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #718,sp|AC005500.2|AC005500 Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCCAAAGUUAGCUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCAAACUCAUUCGUCUCUGUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA hit 91 : 132562 132670 (fwd) 40.57 bits <<<<<<<<-----<<<<.<<<_____________________________________.. 1 ggcugGUcCGAAgguag.UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUGG: C AAG::AG UG:GUUAU+ CA UU+AUUG+U+A+AGU+AGU +CAG++ 132562 GGCUGGGCCAAAGUUAGcUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCaa 132621 ..__________...__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UU +UCU U C+CCC +C:CACU::UGCACUU :CUAG:CU 132622 acUCAUUCGUCUcugUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA 132670 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #718,sp|AC005500.2|AC005500 Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCCGAAGGUAGUGUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACUCCAGGUUCUACUUUUUCACCUUCUCACUACUGCAGUUGACUAGACUU hit 92 : 126715 126609 (rev) 36.52 bits <<<<<<<<-----<<<<..<<<______________________________________ 1 ggcugGUcCGAAgguag..UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaU 58 G :UGGUCCGAAGG:AG UG:GUUA+C CA UU+AUUG+U+ACAGU+A + ++A U 65878 GGUUGGUCCGAAGGUAGugUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACU 65937 _________....__________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CC +GUUCU UU + CC +C:CACU:CUGCA UUGACUA: CUU 65938 CCAGGUUCUacuuUUUCACCUUCUCACUACUGCAGUUGACUAGACUU 65984 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #731,sp|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 14q24.3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGUUAUCUCAACUGAUGUUCACAGUCAGUUACAGAUCAAGUGCCUUGUUUUACUUUUUCCCCUCUUCUCACUACUGCAUUUGACUAAUUAA hit 93 : 8812 8921 (fwd) 45.59 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:+UGGUC GAAGG:AGUG:GUUAUC CAA+U+A UG+U+ACAGU+AGUU+CAG++ 8812 GGCUGGUCUGAAGGUAGUGAGUUAUCUCAACUGA-UGUUCACAGUCAGUUACAGAUCaag 8870 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CCUUGUU U U C+C C +C:CACU:CUGCA UUGACUA+:+ 8871 uGCCUUGUUUUacuuuuUCCCCUCUUCUCACUACUGCAUUUGACUAAUUAA 8921 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #731,sp|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 14q24.3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGGUAGUGAGUUAUAUCACCUGAUUGUUCAGUCAGUUACAGGCCAAACCCCUUGUUCUACUCUUUUCCCUUCUCAAUACUGCACUUGUUUUUAAAU hit 94 : 57074 57180 (fwd) 28.86 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G CC AAGG:A UG:GUUAU CA +U+AUUG+U+A GU+AGUU+CAG 57074 GGCUGGUCCAAAGGUAGUGAGUUAUAUCACCUGAUUGUUCA--GUCAGUUACAGGCCaaa 57131 .__________....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +CCUUGUUCU UU UCCC +C:CA U:CUGCACUUG U U 57132 cCCCUUGUUCUacucUUUUCCCUUCUCAAUACUGCACUUGUUUUUAAAU 57180 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #738,sp|AC005529.7|AC005529 Homo sapiens chromosome 22 clone bk256d12 map 22q12, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCCAAGUGCAGCAGUGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCUUUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC hit 95 : 286625 286724 (fwd) 35.39 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUCC A G:AG::G U++U A+UAA UGAU+ACA +AG U+CAG+++UC 286625 GGCUAGUCCAAGUGCAGCAG-UGUUGGUGACUAACUGAUCACAACCAGAUACAGAUUUCU 286683 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU C+C+CC::CU:C C CUUGAC:AGCCU 286684 UUGUUCCUUCUGCACUCCCACUGCCUCGCUUGACUAGCCUC 286724 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #746,sp|AC005537.2|AC005537 Homo sapiens BAC clone GS1-308H5 from 7p13-p11.2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGCAGGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAUAGAGCAAACUGCUUGCUCUACUCUUUCACCCCUUCUCACUACUGCACUUGACUAGUUGA hit 96 : 47507 47397 (rev) 39.23 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +:CUGGUC GAAGG:AG:: GUUAUC CAAUU+AUUG+U+ACAGU+AGUU+ AG+ 129244 GGCUGGUCUGAAGGUAGCAGGUUAUCUCAAUUGAUUGUUCACAGUCAGUUAUAGAGCaaa 129303 .__________.....___._______>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUC.UccCCCCccAcugcUgcaCUUgACuagccUU 101 U CUUG UCU UUC +CCC +C ::CU:CUGCACUUGACUAG:+ 129304 cUGCUUGCUCUacucuUUCaCCCCUUCUCACUACUGCACUUGACUAGUUGA 129354 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #830,sp|AC005631.4|AC005631 Homo sapiens PAC clone RP5-1129J21 from 7, complete sequence. ----isReversed: 1 ----hitSequence: UACUGAUAACUGGUAGUGAGUUAUCCCAAUUGAUGGUUCACUGUCAGUUACCGAUCAAAUUCCUUGUUCUAUACUCUUUACUCCCCUUUCACUACUGCACUUAACUGGUCUU hit 97 : 127031 126920 (rev) 36.33 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::C:G:U: GG:AGUG:GUUAUC+CAAUU+AU G+U+AC GU+AGUU+C G++ 16743 UACUGAUA-ACUGGUAGUGAGUUAUCCCAAUUGAUGGUUCACUGUCAGUUACCGAUCaaa 16801 .__________........__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU........UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CUCCCC+ :CACU:CUGCACUU:A:U:G::UU 16802 uUCCUUGUUCUauacucuuUACUCCCCUUUCACUACUGCACUUAACUGGUCUU 16854 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #841,sp|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165_I_16, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAAGGUAGUGAGCUAUCUCAAUCGGAUUGUUCACACUCAGUUACAGAUUGAACUCCUUGUUCUACUUUCCCUGCUUCUCUCUACUGCAAUUGACUAGUCUU hit 98 : 3654 3545 (rev) 53.90 bits <<<<<<<<-----<<<<<<<___________.__________________________.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAU.UaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUGGUC GAAGG:AG G:G UAUC CAAU +AUUG+U+ACA U+AGUU+CAG+++ 173315 GGCUGGUCUGAAGGUAGUGAGCUAUCUCAAUcGGAUUGUUCACACUCAGUUACAGAUUga 173374 ..__________....__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:C CU:CUGCA UUGACUAG:CUU 173375 acUCCUUGUUCUacuuUCCCUGCUUCUCUCUACUGCAAUUGACUAGUCUU 173424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #934,sp|AC005821.1|AC005821 Homo sapiens chromosome 17, clone hRPK.156_L_14, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAAGAUGGUGAGUUAUCUCAAUUGGUUGUUCAUAGUCAGUUACAGACCAAAGUCUUUGUUCUACUCUUUCCUCCUUUCUGACUUUACUAGUCUU hit 99 : 145009 145111 (fwd) 37.41 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU C AAG:U:G :GUUAUC CAAUU+ UUG+U+A+AGU+AGUU+CAG+ 145009 GGCUGGUCCAAAGAUGGUGAGUUAUCUCAAUUGGUUGUUCAUAGUCAGUUACAGACCaaa 145068 .__________..__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU..UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU U U+CC CC: C:G: UU ACUAG:CUU 145069 gUCUUUGUUCUacUCUUUCCUCCUUUCUGAC----UUUACUAGUCUU 145111 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #940,sp|AC005829.1|AC005829 Homo sapiens chromosome 17, clone hRPK.259_G_18, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAAGUAUAUUGGUGUUUACUAUUAAUUGAUCACAGCCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGAUUAGCCUU hit 100 : 85717 85816 (fwd) 60.32 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUG UCC A :UA:UGG U++U+AC AUUAAUUGAU+ACAG +AGUU+CAG+++UC 85717 GGCUGGUCCAAGUAUAUUGG-UGUUUACUAUUAAUUGAUCACAGCCAGUUACAGAUUUCU 85775 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCA:UG:U CACUUGA UAGCCUU 85776 UUGUUCCUUCUCCACUCCCACUGCUUCACUUGAUUAGCCUU 85816 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #945,sp|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.318_A_15, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCCAAUGGUGUUGGGUUAUCAGAACUUGUUAACAUUAGUGUCACUAAACUUGAUAUACAACCCCCUACUGCUAAAGUUAACUGGCUUU hit 101 : 59763 59856 (fwd) 30.83 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC:GGU C A GGU::U GGUUAUCA AA U UUA UUAGU UCA+UAA C 59763 AGCUGGUCCAAUGGUGUUGGGUUAUCA----GAACUUGUUAACAUUAGUGUCACUAA-AC 59817 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+U + CCCCC A::GCU +A UU ACU:GC:UU 59818 UUGAUAUa---CAACCCCCUACUGCUAAAGUUAACUGGCUUU 59856 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #986,sp|AC005899.1|AC005899 Homo sapiens chromosome 17, clone hRPK.227_G_15, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAAGGUAAUGAGUAAUCUCGAUUGUUCACAGUCAGUUACAGAUUGAGCUCCUGAUCUACUCUUUCCCUGCUUCUCACUACUGCACUUUGACUAGUCUU hit 102 : 173122 173016 (rev) 41.58 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUGGUC GAAGG:A:UG:GU AUC +AUUG+U+ACAGU+AGUU+CAG+++ 10706 AGCUGGUCUGAAGGUAAUGAGUAAUCU----CGAUUGUUCACAGUCAGUUACAGAUUgag 10761 .__________......__________>>>>>>>-----.-->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaC.UUgACuagccUU 101 UCCU+ UCU U C++ C +C:CA:U:CUGCAC UUGACUAG::UU 10762 cUCCUG-AUCUacucuuUCCCUGCUUCUCACUACUGCACuUUGACUAGUCUU 10812 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1039,sp|AC005995.3|AC005995 Homo sapiens PAC clone RP1-42M2 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGAUGGUCAAAGUGCAACGCGGUUUACAGCUAAUUGAUCACCACCAGUUACAGAUUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUCACUAGCCUA hit 103 : 39168 39268 (fwd) 34.44 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GG:UGGU A G:A:: ++U+ACA +UAAUUGAU+AC +AGUU+CAG+++ U 39168 GGAUGGUCAAAGUGCAACGC-GGUUUACAGCUAAUUGAUCACCACCAGUUACAGAUUuUU 39226 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C ::U:CU CACUU ACUA:CCU 39227 UUUGUUCCUUCUCCACUCCAACUGCUUCACUUCACUAGCCUA 39268 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1055,sp|AC006011.2|AC006011 Homo sapiens PAC clone RP5-935K16 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGGCCAAGUGCAGUGGUGUUUACAACUGGUUGAUUGAUUAUAACCACUUACAGAUUUCUUUGUUCCUUCUCCAUUCCCAUUGCUUCACUUGAUUAGCCUA hit 104 : 129533 129430 (rev) 44.64 bits <<<<<<<<-----<<<<<<<__________....__________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAA....UUaAuUGaUUAcAgUUAGUUUCAguA 56 GGCUG :CC A G:A UGG U++U+ACAA UU+AUUGAUUA+A +A UU+CAG++ 21149 GGCUGGGCCAAGUGCAGUGG-UGUUUACAAcuggUUGAUUGAUUAUAACCACUUACAGAU 21207 _____________________>>>>>>>------->>>>>>>>:: 57 aUCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +UC UUGUUC UUCUCC+ +CCCA U:CU CACUUG: UAGCCU 21208 UUCUUUGUUCCUUCUCCAUUCCCAUUGCUUCACUUGAUUAGCCUA 21252 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1055,sp|AC006011.2|AC006011 Homo sapiens PAC clone RP5-935K16 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUCAUUAACAUUAGUGUCACUGAAGUUGAUAUACAACCCCCAACUGCUAAAUUUGACUGGCUUA hit 105 : 98679 98586 (rev) 41.27 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:GGUCCGA GGUAGU GGUUAUCA AA U AUUA UUAGU UCA+U A 52003 GGCUGGUCCGAUGGUAGUGGGUUAUCA----GAACUCAUUAACAUUAGUGUCACUGA-AG 52057 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+U + CCCCC ACUGCU +A UUGACU:GC+U 52058 UUGAUAUa---CAACCCCCAACUGCUAAAUUUGACUGGCUUA 52096 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1058,sp|AC006014.3|AC006014 Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGCCCGAGUGCAGUGGUGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUUUUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA hit 106 : 64093 64192 (fwd) 45.62 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCU G:CCGA G:AGUGG U+ U+ACA UUAAUUGAU+ACA A UU+CAG+++U 64093 AGCUGGCCCGAGUGCAGUGG-UGGUUACAGUUAAUUGAUCACAACGACUUACAGAUUUUU 64151 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACU G:C AGC: 64152 UUGUUCCUUCUCCACUCCCACUGCUUCACUGGACGAGCCAA 64192 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1058,sp|AC006014.3|AC006014 Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 107 : 36405 36306 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 91357 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 91415 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 91416 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 91456 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1058,sp|AC006014.3|AC006014 Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 108 : 8437 8338 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 119325 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 119383 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 119384 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 119424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1066,sp|AC006023.2|AC006023 Homo sapiens PAC clone RP5-1147A1 from 7p14-p12, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCAGUCAGUUACAGAUCGAACUCUUUGUUCUCGUCUUCCCCCCGCUUCUCACUGCUGCACUUGACUAGUCUG hit 109 : 94159 94050 (rev) 53.41 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGGU: GAAGGUAGUG:GUUAUC AAUU+AUUG+U+A GU+AGUU+CAG++ 63227 GCCUGGUUGGAAGGUAGUGAGUUAUCUUAAUUGAUUGUUCA--GUCAGUUACAGAUCgaa 63284 .__________.......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UUGUUCU C+C C +C:CACUGCUGCACUU:ACUAG:CU 63285 cUCUUUGUUCUcgucuucCCCCCGCUUCUCACUGCUGCACUUGACUAGUCUG 63336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1089,sp|AC006046.1|AC006046 Homo sapiens clone UWGC:r9a from 6p21, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGUUUUUGUUUCAUCUUCACUCCCACUGUUUCACUUGACUAGCCUU hit 110 : 40568 40667 (fwd) 59.37 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 GGCUGGUC GA :AGUGG U++U+ACAA+UAAUUGAU+ACA +AGUU+ AG++ U 40568 GGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUAUAGAUGuUU 40626 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U++UUC +UCU+C+C+CCCACU: U CACUUGACUAGCCUU 40627 UUGUUUC-AUCUUCACUCCCACUGUUUCACUUGACUAGCCUU 40667 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1098,sp|AC006057.5|AC006057 Homo sapiens 12 PAC RP1-96H9 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCUAAAAGUAGUGAGUUAUCUCAAUGGAUUGCUCACGUCAGUUACAGAUGGAAGUCCUUGUUCUACUCUUCCCUGUUUCUCACUACCGCGCUUGACUAGUCUC hit 111 : 130589 130697 (fwd) 46.23 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG:C AA+G:AGUG:GUUAUC CAAU +AUUG U+AC GU+AGUU+CAG++ 130589 GGCUGGGCUAAAAGUAGUGAGUUAUCUCAAUGGAUUGCUCAC-GUCAGUUACAGAUGgaa 130647 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ +C:CACU:C GC CUUG:CUAG:CU 130648 gUCCUUGUUCUacucuUCCCUGUUUCUCACUACCGCGCUUGACUAGUCUC 130697 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1121,sp|AC006116.1|AC006116 Homo sapiens chromosome 19, BAC CIT-B-393i15 (BC301323), complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGCUCAAAGGUAGUGAGUUCUACCAAUGUAUUGUCCACAGUCAGUUACAGACCAAAUUCCUUGGUCUACUCUUUCCCCCCUCCUCACUAAUGCACUUGACUAGUCUU hit 112 : 40974 40864 (rev) 46.41 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUGG::C AAG :AGUG:GUU U +CAAU AUUG+ +ACAGU+AGUU+CAG+ 125738 GGCUGGCUCAAAGGUAGUGAGUUCUACCAAUGUAUUGUCCACAGUCAGUUACAGACCaaa 125797 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG+UCU U C+CCC CC:CACU: UGCACUU::CUAG:CUU 125798 uUCCUUGGUCUacucuuUCCCCCCUCCUCACUAAUGCACUUGACUAGUCUU 125848 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1166,sp|AC006165.1|AC006165 Homo sapiens clone UWGC:y54c125 from 6p21, complete sequence. ----isReversed: 0 ----hitSequence: GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAGUUACAGAUUGAACUCCUUGUUCUACUCUUUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU hit 113 : 22709 22817 (fwd) 52.53 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU UCC AAG :AGUG:GUUAUC CAAUU+AUUG+U+A GU+AGUU+CAG+++ 22709 GGCUUGUCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAGUUACAGAUUgaa 22766 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C++ C +C:CACU: UGCACUUGA AG:CUU 22767 cUCCUUGUUCUacucuuUACCUACUUCUCACUAUUGCACUUGAUUAGUCUU 22817 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1272,sp|AC006360.2|AC006360 Homo sapiens PAC clone RP5-1140N14 from 14q24.3, complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCUGAGGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUUACAGAUUGAACUCCUUGUUCUUUCCUUCCCCCUUUCUCACUGCUGCUCUUGACUAGUCUU hit 114 : 1845 1950 (fwd) 55.60 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CU:GUC GA GGUAGUG:GUUAUC CAAUU+AUUG+U+AC AGUU+CAG+++ 1845 GGCUAGUCUGAGGGUAGUGAGUUAUCUCAAUUGAUUGUUCAC----AGUUACAGAUUgaa 1900 .__________.__________....>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.UUCUccCCCC....ccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U CU+CCCCC :CACUGCUGC CUUGAC:AG:CUU 1901 cUCCUUGUUCUuUCCUUCCCCCuuucUCACUGCUGCUCUUGACUAGUCUU 1950 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1327,sp|AC006452.5|AC006452 Homo sapiens PAC clone RP4-592P3 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GACUGGUCUGAAGGCAGUGAGUCAACUGAAUUGAUUAUUCACAGUCAGUUACGCAUCCAACUCUUUAUUCUACUCUUCCCCCCUUCUCACUACUGCAUUUGACACUUGUG hit 115 : 48117 48226 (fwd) 31.41 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 +: GUC GAAGG AGUG:GU A C AAUU+AUU +U+ACAGU+AGUU+C +++ 48117 GACUGGUCUGAAGGCAGUGAGUCAACUGAAUUGAUUAUUCACAGUCAGUUACGCAUCcaa 48176 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UU UUCU U C+CCC +C:CACU CUGCA UUGAC :+U 48177 cUCUUUAUUCUacucuUCCCCCCUUCUCACUACUGCAUUUGACACUUGUG 48226 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1350,sp|AC006480.3|AC006480 Homo sapiens BAC clone RP11-166O4 from 7p11.2-q11.2, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA hit 116 : 63240 63141 (rev) 45.60 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGGUC A G:A:: G U++U AC A+UAAUUGAU+ACA +AGUU+CAG+++U 96513 GGCUGGUCAAAGUGCAACGG-UGUUAACCACUAAUUGAUCACAACCAGUUACAGAUUUUU 96571 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CA UUGACUAGCCU 96572 UUGUUCCUUCUCCACUCCAACUGCUUCAUUUGACUAGCCUA 96612 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1367,sp|AC006511.5|AC006511 Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCUGAGUACAGUGGCAUUUACAACUAACUGAUCACAACCAGUUAUGAAUUUCUUCAUUACUUUUCCACUCACACUGCUUCACUUGACCAGCUUU hit 117 : 154160 154061 (rev) 36.53 bits <<<<<<<<-----<<<<<<<_____________________________________.__ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.UC 59 +GCU:GUC GA ::AGUG +U+ACAA+UAA UGAU+ACA +AGUU+ G+A+ UC 32162 GGCUGGUCUGAGUACAGUGG-CAUUUACAACUAACUGAUCACAACCAGUUA-UGAAUuUC 32219 __________________>>>>>>>------->>>>>>>>:: 60 cUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 U UU+ UU UCC+C+C CACU::U CACUUGAC:AGC+UU 32220 UUCAUUACUUUUCCACUCACACUGCUUCACUUGACCAGCUUU 32261 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1372,sp|AC006517.46|AC006517 Homo sapiens 12 BAC RP11-277J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCUAAAUGCAGUGGUCCUUACAACCAACUGAUCACAACCAGUAACAAUUUUCUUUGUUCCUUCUCCACUCUCACAGCUUCACUUGACUAGCCUU hit 118 : 14909 15008 (fwd) 45.04 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUGGUC AA G: GUG U U+ACAA+ AA UGAU+ACA +AGU +CA U++UC 14909 AGCUGGUCUAAAUGCAGUGG-UCCUUACAACCAACUGAUCACAACCAGUAACAAUUUUCU 14967 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+C CAC :CU CACUUGACUAGC:UU 14968 UUGUUCCUUCUCCACUCUCACAGCUUCACUUGACUAGCCUU 15008 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1372,sp|AC006517.46|AC006517 Homo sapiens 12 BAC RP11-277J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GCCUCGUCUGAAGGUAGUCAGUUACCUCAAUUGUUUGUUCACAGUGAAUUACAGAUCGAACUCCUUGUUCUACUCUUCCCCACUUCUCACUACUGCACUUGUCUUAAAGA hit 119 : 65260 65369 (fwd) 36.48 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 + :G C GAAGG:AGU :GUUA+C CAAUU+ UUG+U+ACAGU A UU+CAG++ 65260 GCCUCGUCUGAAGGUAGUCAGUUACCUCAAUUGUUUGUUCACAGUGAAUUACAGAUCgaa 65319 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU U C+C C +C: ACU:CUGCACUUG C: + 65320 cUCCUUGUUCUacucuUCCCCACUUCUCACUACUGCACUUGUCUUAAAGA 65369 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1372,sp|AC006517.46|AC006517 Homo sapiens 12 BAC RP11-277J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GAAUUAUCUAGGCAGUGAGUUAUCCCAAUUGAUUGUUCAGGAUCAGUUACAGAUCAUACUCCUUGCUCUACUUCCCCCCCCCCCUCACUACUGCAGUUGAGUAGUAUU hit 120 : 81215 81322 (fwd) 34.99 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::U :UC AGG AGUG:GUUAUC+CAAUU+AUUG+U+A + U+AGUU+CAG++ 81215 GAAUUAUC--UAGGCAGUGAGUUAUCCCAAUUGAUUGUUCAGGAUCAGUUACAGAUCaua 81272 .__________.....__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU C+CCCCCC:CACU CUGCA UUGA: A:: UU 81273 cUCCUUGCUCUacuucCCCCCCCCCCUCACUACUGCAGUUGAGUAGUAUU 81322 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1409,sp|AC006583.31|AC006583 Homo sapiens 3 BAC RP11-491D6 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUAGUCUGAGUGCAGUAAUGUUUACAAGUAAUUGAUCACAAGCGGUUACAGAUUUAUUUGUUCCUUCUCCACCUUCAUUGCUUCACUUGACUAGCCUU hit 121 : 26792 26891 (fwd) 55.89 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCU:GUC GA G:A U:: U++U+ACAA UAAUUGAU+ACA ++GUU+CAG+++U 26792 GGCUAGUCUGAGUGCAGUAA-UGUUUACAAGUAAUUGAUCACAAGCGGUUACAGAUUUAU 26850 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+CC ::A U:CU CACUUGAC:AGCCUU 26851 UUGUUCCUUCUCCACCUUCAUUGCUUCACUUGACUAGCCUU 26891 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1432,sp|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence. ----isReversed: 1 ----hitSequence: GGCCAGUCAGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAUCAGUUACAGGUCAAACUCCUUGCUCUACUCUUUUCCCUUUUCUCACUGCUGCACUGGACUAGUCUA hit 122 : 34043 33934 (rev) 48.65 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:C::GUC GAAGGUAGUG:GUUAUC CAAUU+AUUG+U+AC U+AGUU+CAG + 145715 GGCCAGUCAGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAC-AUCAGUUACAGGUCaaa 145773 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU UUC+C +C:CACUGCUGCACU GAC::G:CU 145774 cUCCUUGCUCUacucuuUUCCCUUUUCUCACUGCUGCACUGGACUAGUCUA 145824 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1435,sp|AC006963.4|AC006963 Homo sapiens PAC clone RP1-278D1 from X, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUUCACUUUGACUGCUUCACUCGGCUAGCCAG hit 123 : 55748 55649 (rev) 55.06 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 GGCUGG CCGA G:AGU U++U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++UC 32468 GGCUGGUCCGAGUGCAGUGG-UGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCU 32526 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCU+C+C+ ACU:CU CACU G CUAGCC 32527 UUGUUCCUUCUUCACUUUGACUGCUUCACUCGGCUAGCCAG 32567 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1465,sp|AC006995.5|AC006995 Homo sapiens BAC clone RP11-396K3 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 124 : 207245 207146 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 4287 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 4345 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 4346 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 4386 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1465,sp|AC006995.5|AC006995 Homo sapiens BAC clone RP11-396K3 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 125 : 179291 179192 (rev) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 32241 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 32299 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 32300 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 32340 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1470,sp|AC007000.2|AC007000 Homo sapiens BAC clone RP11-467H10 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCAAAGUGCAACGGUCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUUUUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA hit 126 : 18245 18344 (fwd) 47.22 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +:CUGGUC A G:A:: G U +U+ACAA+UAAUUGAU+ACA +AGUU+CAG+++U 18245 GGCUGGUCAAAGUGCAACGG-UCUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUUU 18303 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CC ::U:CU CACUUGACUAG:+U 18304 UUGUUCCUUCUCCACUCCAACUGCUUCACUUGACUAGUGUA 18344 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1480,sp|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCUGAGUGCAGUGGUGUUUACAACUAAUUGUCUCAACCCGUUGCAGAUGUGUUUGUUUUGUUUUGUUUUGUUUUGUUUUCUCCACUCCCACUGCUUCACCUGAUUAGCCUU hit 127 : 132225 132341 (fwd) 31.87 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GCUG UC GA G:AGUGG U++U+ACAA+UAAUUG U+ CA + GUU CAG++ U 132225 AGCUGGUCUGAGUGCAGUGG-UGUUUACAACUAAUUG-UCUCAACCCGUUGCAGAUGUGU 132282 _______..................__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU..................UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUU U UUCUCC+C+CCCACU:CU CAC UGA UAGC:UU 132283 UUGUUUUguuuuguuuuguuuuguuUUCUCCACUCCCACUGCUUCACCUGAUUAGCCUU 132341 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1486,sp|AC007021.3|AC007021 Homo sapiens PAC clone RP6-155F9 from Xq23, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGCCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCAGUCAAUUACAUAUUGAACUUUUUGUUCUACUCUUUCUCCCCUUGUCACUACUGUACUUGACUACACUU hit 128 : 17538 17646 (fwd) 49.56 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G UGG:CC AAGG:AGUG:GUUAUC CAAUU+AUUG+U+A GU+A UU+CA +++ 17538 GGCUGGCCCAAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCA--GUCAAUUACAUAUUgaa 17595 .__________.....__________.>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCC.ccAcugcUgcaCUUgACuagccUU 101 U UUGUUCU UUCUCCCC+ :CACU:CUG ACUUG:CUA CUU 17596 cUUUUUGUUCUacucuUUCUCCCCUUgUCACUACUGUACUUGACUACACUU 17646 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1494,sp|AC007029.3|AC007029 Homo sapiens clone RP5-855F16, complete sequence. ----isReversed: 1 ----hitSequence: GACUGGUCCAAGUGGUGUUUAUAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCAUUCUCACUGCUUCACUUGACUAGCCUU hit 129 : 92177 92083 (rev) 49.29 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 G:CUGGUCC A GU:GUG UUAU AC UAAUUGAU+ACA +AGUU+CAG+++UC 3169 GACUGGUCCAA--GUGGUGU-UUAUAAC---UAAUUGAUCACAACCAGUUACAGAUUUCU 3222 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+ +C CAC:GCU CACUUGACUAG:CUU 3223 UUGUUCCUUCUCCAUUCUCACUGCUUCACUUGACUAGCCUU 3263 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1519,sp|AC007066.4|AC007066 Homo sapiens chromosome 9, clone hRPK.355_O_1, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGGUCCAAAGACAGUGAGUUAUCUCGAUUGUUCAGUCAGUUACAGAACAAACUCCUUGUUCUACUCUUUUCCCCGUUCUCACUACUGCACUUUAGUAGUCUU hit 130 : 98741 98845 (fwd) 36.75 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 ::CUG U C AAG: AGUG:GUUAUC +AUUG+U+A GU+AGUU+CAG+A 98741 AGCUGGUCCAAAGACAGUGAGUUAUCU----CGAUUGUUCA--GUCAGUUACAGAACaaa 98794 .__________......__________>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU......UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUCU UUC+CC +C:CACU :UGCACUU A UAG::UU 98795 cUCCUUGUUCUacucuuUUCCCCGUUCUCACUACUGCACUUUAGUAGUCUU 98845 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1600,sp|AC007242.3|AC007242 Homo sapiens BAC clone RP11-182H9 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGAUCCGAGUGCAGUGGUGUUUACAACUACUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUAACUGGCCAA hit 131 : 69448 69349 (rev) 56.43 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC:G:U CGA G:AGUGG U++U+ACAA+UA UUGAU+ACA +AGUU+CAG+++UC 43301 AGCUGAUCCGAGUGCAGUGG-UGUUUACAACUACUUGAUCACAACCAGUUACAGAUUUCU 43359 _________________>>>>>>>------->>>>>>>>:: 61 UUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUGUUC UUCUCC+C+CCCACU:CU CACUU A:U:GC: 43360 UUGUUCCUUCUCCACUCCCACUGCUUCACUUAACUGGCCAA 43400 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1631,sp|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUAUUCACAGUUAGCUACCAGUUGAACUCCUUACUCUGCUUUUUCUCCCCUUAUCACUUCUGUGCUUGAUUAGUCUU hit 132 : 35629 35738 (fwd) 40.63 bits <<<<<<<<-----<<<<<<<________________________________._____.. 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUC.AguAa.. 57 G:CUG UC GAAGG+AGUG:GUUAUC CA UU+A U +U+ACAGUUAG U+C AGU+ 35629 GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGA-UAUUCACAGUUAGCUACcAGUUGaa 35687 .__________.....__________.>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU.....UUCUccCCCC.ccAcugcUgcaCUUgACuagccUU 101 UCCUU UCU UUCUCCCC+ :CACU+CUG CUUGA UAG:CUU 35688 cUCCUUACUCUgcuuuUUCUCCCCUUaUCACUUCUGUGCUUGAUUAGUCUU 35738 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1725,sp|AC007435.12|AC007435 Homo sapiens, clone 6_C_10, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCUCCAAUGGUAGUGGGUUAUCAAAAUUUAUUAACAUUAGUUCACUAAAGUUGAUAUAUAACCCCCCAUUGCUAAAUCUGACUGGCUUU hit 133 : 33251 33343 (fwd) 32.47 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 +GC:G UCC A GGUA UGGGUUAUCA AAUU AUUA UUAGUU CA+UAA 33251 GGCUGCUCCAAUGGUAGUGGGUUAUCA----AAAUUUAUUAACAUUAGUU-CACUAA-AG 33304 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG U+U U CCCCCCA UGCU +A UGA U:GC+UU 33305 UUGAUAUa---UAACCCCCCAUUGCUAAAUCUGACUGGCUUU 33343 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1769,sp|AC007536.10|AC007536 Homo sapiens 12 BAC RP11-277E18 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AUUAUCUACGUAGUGAGUUAUCCCAAUUGAUUGUUCAGGGUCAGUUACAGAUCAAACUCCUUGUUCCACUCUUCCCCAUCCCCCCACUACGGCACUUCACUAGUAUU hit 134 : 10244 10138 (rev) 29.96 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 : : U:C G:AGUG GUUAUC+CAAUU+AUUG+U+A +GU+AGUU+CAG++ 61576 AUUAUCUAC----GUAGUGAGUUAUCCCAAUUGAUUGUUCAGGGUCAGUUACAGAUCaaa 61631 .__________....______..____>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUcc..CCCCccAcugcUgcaCUUgACuagccUU 101 UCCUUGUUC UUC+CC CCCC CACU:C GCACUU:A : :UU 61632 cUCCUUGUUCCacucUUCCCCauCCCCCCACUACGGCACUUCACUAGUAUU 61682 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1811,sp|AC007610.9|AC007610 Homo sapiens chromosome 16 clone RP11-429P3, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGGUCUGAUGGUAGUGGGUUAUCAGGACUUAUUAACAUUAGUGUCACUGAAGUUGGUAUACAACCCCCCACGCUAAGUUUGACUGGCUUU hit 135 : 110781 110689 (rev) 36.69 bits <<<<<<<<-----<<<<<<<________________________________________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaUCc 60 :GC:GGUC GA GGUAGUGGGUUAUCA +A U AUUA UUAGU UCA+U A 104011 AGCUGGUCUGAUGGUAGUGGGUUAUCA----GGACUUAUUAACAUUAGUGUCACUGA-AG 104065 _______.__________>>>>>>>------->>>>>>>>:: 61 UUgUUCU.UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UUG+U+U + CCCCCCAC GCU + UUGACU:GC:UU 104066 UUGGUAUa---CAACCCCCCAC-GCUAAGUUUGACUGGCUUU 104103 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1846,sp|AC007679.4|AC007679 Homo sapiens BAC clone RP11-273D4 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGUCCAUAUGCAGUGGUUUUACAAGUAAUUUAUCACAACCAGUUAGUUACAGAUUUCUUUGCUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU hit 136 : 134611 134713 (fwd) 54.80 bits <<<<<<<<-----<<<<<<<_______________________...._____________ 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcA....gUUAGUUUCAguA 56 GGCUGGUCC A G:AGUGG U+U+ACAA UAAUU AU+ACA GUUAGUU+CAG++ 134611 GGCUGGUCCAUAUGCAGUGG--UUUUACAAGUAAUUUAUCACAaccaGUUAGUUACAGAU 134668 _____________________>>>>>>>------->>>>>>>>:: 57 aUCcUUgUUCUUUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 +UC UUG UC UUCUCC+C+CCCACU:CU CACUUGACUAGCCUU 134669 UUCUUUGCUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUU 134713 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1852,sp|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUUUCACAGUCAGCUACAGAUUGAACUCCUUGCUCUACUCUUUUCCCCCCUUAUCACUUCUGCGCUUGUUUAGUCUU hit 137 : 78902 79012 (fwd) 46.61 bits <<<<<<<<-----<<<<<<<_____________________________________... 1 ggcugGUcCGAAgguagUggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa... 57 G:CUG C GAAGG+AGUG:GUUAUC CA UU+AUU U+ACAGU+AG U+CAG+++ 78902 GGCUGCUCUGAAGGUAGUGAGUUAUCUCAGUUGAUUU-UCACAGUCAGCUACAGAUUgaa 78960 .__________....__________...>>>>>>>------->>>>>>>>:: 58 .UCcUUgUUCU....UUCUccCCCC...ccAcugcUgcaCUUgACuagccUU 101 UCCUUG UCU UU UCCCCCC :CACU+CUGC CUUG UAG:CUU 78961 cUCCUUGCUCUacucUUUUCCCCCCuuaUCACUUCUGCGCUUGUUUAGUCUU 79012 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1866,sp|AC007731.16|AC007731 Homo sapiens chromosome 22 clone b562f10 map 22q11, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGGGCCAAAGUUAGCUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCAAACUCAUUCGUCUCUGUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA hit 138 : 137623 137731 (fwd) 40.57 bits <<<<<<<<-----<<<<.<<<_____________________________________.. 1 ggcugGUcCGAAgguag.UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAa.. 57 G:CUGG: C AAG::AG UG:GUUAU+ CA UU+AUUG+U+A+AGU+AGU +CAG++ 137623 GGCUGGGCCAAAGUUAGcUGAGUUAUUUCAGUUGAUUGUUCAUAGUCAGUAACAGAUCaa 137682 ..__________...__________>>>>>>>------->>>>>>>>:: 58 ..UCcUUgUUCU...UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 UC UU +UCU U C+CCC +C:CACU::UGCACUU :CUAG:CU 137683 acUCAUUCGUCUcugUCCCCCCUUCUCACUACUGCACUUAACUAGUCUA 137731 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1866,sp|AC007731.16|AC007731 Homo sapiens chromosome 22 clone b562f10 map 22q11, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGGUCCGAAGGUAGUGUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACUCCAGGUUCUACUUUUUCACCUUCUCACUACUGCAGUUGACUAGACUU hit 139 : 131776 131670 (rev) 36.52 bits <<<<<<<<-----<<<<..<<<______________________________________ 1 ggcugGUcCGAAgguag..UggGUUAUCaCAAUUaAuUGaUUAcAgUUAGUUUCAguAaU 58 G :UGGUCCGAAGG:AG UG:GUUA+C CA UU+AUUG+U+ACAGU+A + ++A U 50842 GGUUGGUCCGAAGGUAGugUGAGUUACCUCAGUUGAUUGUUCACAGUCACAGAUCCAACU 50901 _________....__________>>>>>>>------->>>>>>>>:: 59 CcUUgUUCU....UUCUccCCCCccAcugcUgcaCUUgACuagccUU 101 CC +GUUCU UU + CC +C:CACU:CUGCA UUGACUA: CUU 50902 CCAGGUUCUacuuUUUCACCUUCUCACUACUGCAGUUGACUAGACUU 50948 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1923,sp|AC007880.2|AC007880 Homo sapiens BAC clone RP11-323F11 from 2, complete sequence. ----isReversed: 0 ----hitSequ