params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,20920,AF270843.1,1,sp|AF270843.1|AF270843 Saccharomyces pastorianus unknown sequence.,0,0,940,1105,59.19,AUCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUUGAAAUUUAAUUAUAAACCAGACCGUCUCCUCAUGGUCUACUAUGGGUGUUCGCUUUUGAACACUUCAAGACUAUGUAGGGAAUUUUUGGAAUAUUUUCUCAU,AF270843.1/940-1105,940-1105,0,165,AF270843.1/940-1105
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,59691,D63682.1,1,sp|D63682.1|D63682 Erythrobasidium hasegawianum U4 small nuclear RNA gene; complete sequence.,0,1,100,231,25.66,AUCUUUGUGCUCGGGCACGCGAUGGCGACGUUGAAGGAAACUGAGUCCCAUCUAAUUGCUGGUUGCAAACUAAAUUCCACACUCUUCACUGCACUCUUCGGAGUCUUUGGGAAUUUCUGCCCGCCUAACGGC,****    NEW  HIT  #0  ****,,2,0,D63682.1/100-231
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,68856,U18778.1,1,sp|U18778.1|SC9537 Saccharomyces cerevisiae chromosome V cosmids 9537; 9581; 9495; 9867; and lambda clone 5898.,1,2,15676,15517,63.89,AUCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUUGAAAUUUAAUUAUAAACCAGACCGUCUCCUCAUGGUCAAUUCGGUGUUCGCUUUUGAAUACUUCAAGACUAUGUAGGGAAUUUUUGGAAUACCUUU,U18778.1/15676-15517 M17238.1/314-473 L22204.1/4781-4940,15676-15517,0,159,U18778.1/15676-15517
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,71108,L22204.1,1,sp|L22204.1|SCPSL1 Saccharomyces cerevisiae profilin synthetic lethal (PSL1) gene; complete cds.,0,3,4781,4940,63.89,AUCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUUGAAAUUUAAUUAUAAACCAGACCGUCUCCUCAUGGUCAAUUCGGUGUUCGCUUUUGAAUACUUCAAGACUAUGUAGGGAAUUUUUGGAAUACCUUU,U18778.1/15676-15517 M17238.1/314-473 L22204.1/4781-4940,4781-4940,0,159,L22204.1/4781-4940
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,71633,M17238.1,1,sp|M17238.1|SCSNR14A S.cerevisiae (U4-like) small nuclear RNA snR14 gene.,0,4,314,473,63.89,AUCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUUGAAAUUUAAUUAUAAACCAGACCGUCUCCUCAUGGUCAAUUCGGUGUUCGCUUUUGAAUACUUCAAGACUAUGUAGGGAAUUUUUGGAAUACCUUU,U18778.1/15676-15517 M17238.1/314-473 L22204.1/4781-4940,314-473,0,159,M17238.1/314-473
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,76725,AL034382.1,1,sp|AL034382.1|SPBC428 S.pombe chromosome II cosmid c428.,1,5,26841,26713,87.27,AUCUUUGUGCACGGGUAUUACGCUUAUCAGUGAGGAACUUUUCCUAGAUGGCGUUAUUGCUAGUUGAAAACUAUUACCCUGACCGCUCCAACUCUCGUUAAGAGUUUUGGGAAUAUUUGGAAACCAACU,X15491.1/209-337 AL034382.1/26841-26713,26841-26713,0,128,AL034382.1/26841-26713
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77621,X15491.1,1,sp|X15491.1|SPSNU4 Yeast snu4 gene for small nuclear RNA U4,0,6,209,337,87.27,AUCUUUGUGCACGGGUAUUACGCUUAUCAGUGAGGAACUUUUCCUAGAUGGCGUUAUUGCUAGUUGAAAACUAUUACCCUGACCGCUCCAACUCUCGUUAAGAGUUUUGGGAAUAUUUGGAAACCAACU,X15491.1/209-337 AL034382.1/26841-26713,209-337,0,128,X15491.1/209-337
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5158,AC005719.2,1,sp|AC005719.2|AC005719 Drosophila melanogaster; chromosome 2L; region 38A5-38B4; BAC clone BACR48M05; complete sequence.,1,7,131802,131664,126.48,AUCUUUGCGCAGAGGCGAUAUCGUAACCAAUGAAGUUCUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG,AC005719.2/131802-131664 D00042.1/321-459 AE003664.2/78699-78837,131802-131664,0,138,AC005719.2/131802-131664
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5171,AC005811.10,1,sp|AC005811.10|AC005811 Drosophila melanogaster; chromosome 2L; region 39B1-39B3; P1 clone DS05527; complete sequence.,1,8,5801,5663,123.94,AUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUCCUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG,AE003669.4/204840-204702 AC005811.10/5801-5663 AC093099.1/54500-54362 D00043.1/320-458,5801-5663,0,138,AC005811.10/5801-5663
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5800,AC009910.5,1,sp|AC009910.5|AC009910 Drosophila melanogaster; chromosome 2L; region 25D-25E; BAC clone BACR35L07; complete sequence.,0,9,87034,87177,71.39,AACCUUGUGCAGUGGCAACAUCGCAAGCAAUGAAGUUCCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUAAAACCAAUAUCUCGCCCAGCGUAAGGAUCUACGAUCUUUAAGCUAAGGCAAUUUUUUUAGGCCCCAAGUGGG,AC009910.5/87034-87177 AE003610.3/130141-130284,87034-87177,0,143,AC009910.5/87034-87177
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6417,AC084532.1,1,sp|AC084532.1|AC084532 Caenorhabditis briggsae cosmid G22L08; complete sequence.,0,10,13028,13166,123.93,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGACAUACGCAAUUUUUGAACGCCUCUAGGAGG,AC084532.1/13028-13166 AC084591.1/29419-29281 AC084591.1/18183-18321,13028-13166,0,138,AC084532.1/13028-13166
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6476,AC084591.1,1,sp|AC084591.1|AC084591 Caenorhabditis briggsae cosmid G42B20; complete sequence.,0,11,18183,18321,123.93,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGACAUACGCAAUUUUUGAACGCCUCUAGGAGG,AC084532.1/13028-13166 AC084591.1/29419-29281 AC084591.1/18183-18321,29419-29281 18183-18321,0,138,AC084591.1/18183-18321
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6476,AC084591.1,1,sp|AC084591.1|AC084591 Caenorhabditis briggsae cosmid G42B20; complete sequence.,1,12,29419,29281,123.93,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGACAUACGCAAUUUUUGAACGCCUCUAGGAGG,AC084532.1/13028-13166 AC084591.1/29419-29281 AC084591.1/18183-18321,29419-29281 18183-18321,0,138,AC084591.1/29419-29281
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6706,AC093099.1,1,sp|AC093099.1|AC093099 Drosophila melanogaster; chromosome 2L; region 39A-39D; BAC clone BACR34H23; complete sequence.,1,13,54500,54362,123.94,AUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUCCUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG,AE003669.4/204840-204702 AC005811.10/5801-5663 AC093099.1/54500-54362 D00043.1/320-458,54500-54362,0,138,AC093099.1/54500-54362
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6946,AC116967.2,1,sp|AC116967.2|AC116967 Dictyostelium discoideum chromosome 2 map 5481549-5500786 strain AX4; complete sequence.,1,14,4907,4783,15.64,GUCUUUACGCUGGGACCAAAGCAGUAGGGCGUGACCGAUAAGGGAUCCACUGUUAGUGCUUUUUGCAAACUAUUCCACAACGCAGUCCGAAACAAUUCGGCCUGCAAUUUUUAAUUCUAUCCUAA,****    NEW  HIT  #1  ****,,2,0,AC116967.2/4907-4783
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7626,AE003610.3,1,sp|AE003610.3|AE003610 Drosophila melanogaster chromosome 2L section 19 of 83 of the complete sequence.,0,15,130141,130284,71.39,AACCUUGUGCAGUGGCAACAUCGCAAGCAAUGAAGUUCCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUAAAACCAAUAUCUCGCCCAGCGUAAGGAUCUACGAUCUUUAAGCUAAGGCAAUUUUUUUAGGCCCCAAGUGGG,AC009910.5/87034-87177 AE003610.3/130141-130284,130141-130284,0,143,AE003610.3/130141-130284
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7680,AE003664.2,1,sp|AE003664.2|AE003664 Drosophila melanogaster chromosome 2L section 73 of 83 of the complete sequence.,0,16,78699,78837,126.48,AUCUUUGCGCAGAGGCGAUAUCGUAACCAAUGAAGUUCUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG,AC005719.2/131802-131664 D00042.1/321-459 AE003664.2/78699-78837,78699-78837,0,138,AE003664.2/78699-78837
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7685,AE003669.4,1,sp|AE003669.4|AE003669 Drosophila melanogaster chromosome 2L section 78 of 83 of the complete sequence.,1,17,204840,204702,123.94,AUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUCCUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG,AE003669.4/204840-204702 AC005811.10/5801-5663 AC093099.1/54500-54362 D00043.1/320-458,204840-204702,0,138,AE003669.4/204840-204702
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,9821,AF022972.1,1,sp|AF022972.1|AF022972 Caenorhabditis elegans cosmid F10D2; complete sequence.,1,18,10804,10666,119.05,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGACCUCUGAAACAUGGGUGCCAUACGCAAUUUUUGAACGCCUCUAGGAGG,AF022972.1/10804-10666,10804-10666,0,138,AF022972.1/10804-10666
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,25406,AF204671.1,1,sp|AF204671.1|AF204671 Leptomonas collosoma tRNA-Gly gene; partial sequence; and tRNA-Pro gene; complete sequence; and small nuclear RNA U4 gene; complete sequence.,0,19,434,542,15.76,AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGUGAUUGUUCAUUUAGUGCUAUACUAAAAACUCCAGUACUCCUAUACGGGAAUAUUUGCAUCCACCAAGGGUG,AF204671.1/434-542,434-542,0,108,AF204671.1/434-542
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,37194,AF326336.1,1,sp|AF326336.1|AF326336 Crithidia fasciculata U4 snRNA; complete sequence.,0,20,2,112,11.34,AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCCGGUGAUUGUUCACUUAGUGCUCAACUAAAACUCCAGUACUCCUAUUACAGGGAACAUUUGAUCCUGCCACGGGCA,AF326336.1/2-112,2-112,0,110,AF326336.1/2-112
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,13573,L22250.1,1,sp|L22250.1|ALSNUC Ascaris lumbricoides small nuclear RNA (snRNA) U4-1 gene.,0,21,171,308,108.75,AGCUUUGCGCAGAGGCGAUAACGUGACCAAUGAGGCUCAGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUCACCCAAUUGCCCGCCGCGGCGCCUGAAACAUGGCGGCCGUACGAAUUUUUGAACGCCCUGAAGGG,L22250.1/171-308,171-308,0,137,L22250.1/171-308
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,15526,AY007789.1,1,sp|AY007789.1|AY007789 Leishmania tarentolae spliced leader RNA gene; partial sequence; U4 snRNA; snoRNA; tRNA-Pro; tRNA-Thr; snoRNA; and tRNA-Gly genes; complete sequence.,1,22,386,276,20.84,AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGGUGAUUGUUCACUUAGUGCUGAACUAAAGACUCCAUCACUCCUAUUGCAGGGAAUAUUUGAACCACCAAGGGUG,X97621.1/386-276 AY007789.1/386-276,386-276,0,110,AY007789.1/386-276
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43515,Z78012.1,1,sp|Z78012.1|CEC52E4 Caenorhabditis elegans cosmid C52E4,0,23,16121,16259,124.25,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG,X07828.1/1-139 X51384.1/287-425 Z74042.1/20147-20285 X51383.1/153-291 Z78012.1/16121-16259,16121-16259,0,138,Z78012.1/16121-16259
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44428,Z74039.1,1,sp|Z74039.1|CEK03B8 Caenorhabditis elegans cosmid K03B8,1,24,1549,1411,124.74,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCCAGGAGG,Z74039.1/1549-1411,1549-1411,0,138,Z74039.1/1549-1411
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45029,X51382.1,1,sp|X51382.1|CESNU41 Caenorhabditis elegans DNA encoding U4-1 snRNA,0,25,183,319,112.53,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACNCUCUAGGAGG,X51382.1/183-319,183-319,0,136,X51382.1/183-319
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45030,X51383.1,1,sp|X51383.1|CESNU42 Caenorhabditis elegans DNA encoding U4-2 snRNA,0,26,153,291,124.25,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG,X07828.1/1-139 X51384.1/287-425 Z74042.1/20147-20285 X51383.1/153-291 Z78012.1/16121-16259,153-291,0,138,X51383.1/153-291
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45031,X51384.1,1,sp|X51384.1|CESNU43 Caenorhabditis elegans DNA encoding U4-3 snRNA,0,27,287,425,124.25,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG,X07828.1/1-139 X51384.1/287-425 Z74042.1/20147-20285 X51383.1/153-291 Z78012.1/16121-16259,287-425,0,138,X51384.1/287-425
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45156,Z74042.1,1,sp|Z74042.1|CET11F9 Caenorhabditis elegans cosmid T11F9,0,28,20147,20285,124.25,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG,X07828.1/1-139 X51384.1/287-425 Z74042.1/20147-20285 X51383.1/153-291 Z78012.1/16121-16259,20147-20285 30433-30295,0,138,Z74042.1/20147-20285
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45156,Z74042.1,1,sp|Z74042.1|CET11F9 Caenorhabditis elegans cosmid T11F9,1,29,30433,30295,126.84,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAAAGCCUCUAGGAGG,Z74042.1/30433-30295,20147-20285 30433-30295,0,138,Z74042.1/30433-30295
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45378,X07828.1,1,sp|X07828.1|CEU4 Caenorhabditis elegans U4 small nuclear RNA,0,30,1,139,124.25,AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG,X07828.1/1-139 X51384.1/287-425 Z74042.1/20147-20285 X51383.1/153-291 Z78012.1/16121-16259,1-139,0,138,X07828.1/1-139
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,68,K03095.1,1,sp|K03095.1|DM4 D. melanogaster U4 small nuclear RNA.,0,31,1,139,114.47,AGCUUAGCGCAGUGGCAAUACCGUAACCAAUGAAGCCUCCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAACCCACGCCAUGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCUUACGAGGG,K03095.1/1-139,1-139,0,138,K03095.1/1-139
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,4638,D00042.1,1,sp|D00042.1|DMU4NR1 Drosophila melanogaster U4 small nuclear RNA gene (U4-1).,0,32,513,650,90.86,AACAGUGCUGAGCUCAUCAUCGUAACCAAUGAAGUUCUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG,D00042.1/513-650,513-650 321-459,0,137,D00042.1/513-650
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,4638,D00042.1,1,sp|D00042.1|DMU4NR1 Drosophila melanogaster U4 small nuclear RNA gene (U4-1).,0,33,321,459,126.48,AUCUUUGCGCAGAGGCGAUAUCGUAACCAAUGAAGUUCUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG,AC005719.2/131802-131664 D00042.1/321-459 AE003664.2/78699-78837,513-650 321-459,0,138,D00042.1/321-459
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,4639,D00043.1,1,sp|D00043.1|DMU4NR2 Drosophila melanogaster U4 small nuclear RNA gene (U4-2).,0,34,320,458,123.94,AUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUCCUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG,AE003669.4/204840-204702 AC005811.10/5801-5663 AC093099.1/54500-54362 D00043.1/320-458,320-458,0,138,D00043.1/320-458
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,11337,Z46971.2,1,sp|Z46971.2|LMLAPGN Leishmania mexicana MBAP gene for membrane-bound acid phosphatase,1,35,6456,6347,21.73,AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGGUGAUUGUUCACUUAGUGCUGAACUAAAGACUCCAUUACUCCUAUUGCAGGGAAUAUUUGAUCCCACCACGGG,Z46971.2/6456-6347,6456-6347,0,109,Z46971.2/6456-6347
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,11712,AJ245951.1,1,sp|AJ245951.1|LSE245951 Leptomonas seymouri tRNA-Gly; tRNA-Pro and U4 snRNA genes,0,36,444,552,17.42,AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCCGGUGAUUGUUCACUUAGUGCUUAACUAAAAACUCCAGUACUCCUAUCACAGGGAAUAUUUGAUCCUACCAAGG,AJ245951.1/444-552,444-552,0,108,AJ245951.1/444-552
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,11899,X97621.1,1,sp|X97621.1|LTMEDRNA5 Leishmania tarentolae DNA for mini-exon and U4 snRNA gene,1,37,386,276,20.84,AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGGUGAUUGUUCACUUAGUGCUGAACUAAAGACUCCAUCACUCCUAUUGCAGGGAAUAUUUGAACCACCAAGGGUG,X97621.1/386-276 AY007789.1/386-276,386-276,0,110,X97621.1/386-276
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,16480,Z98547.2,1,sp|Z98547.2|PFMAL3P3 Plasmodium falciparum MAL3P3,0,38,38134,38270,74.84,AUCUUUGCGGGAGGGGCAGUAUCGCUGUAAAUGACGACUAACGGAUACGCGAUUAUUGCUAGUUGAAAACUACUCCAAUUCCCGUCUCGAUGCUUGAAAAAGCAGAGAGCAAUUUUUGUAGCCUUUCUUUAUAAAGG,Z98547.2/38134-38270,38134-38270,0,136,Z98547.2/38134-38270
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,17921,X13840.1,1,sp|X13840.1|PPU4SNR Physarum polycephalum U4 small nuclear RNA,0,39,1,121,69.26,UUUGCGCUUGGGGCAAUAUUAUAGCGCGUGACCGAAAGGGAUGCAUAAUUAUUGCUAGUUGAAAACUAAUCUAAUGGCUGCGGUGACCCCUCGUGGUCAGGCUGCAAUUUUUGAAAAAGCU,X13840.1/1-121,1-121,0,120,X13840.1/1-121
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,22506,M25777.1,1,sp|M25777.1|TBURNAC Trypanosoma small nuclear RNA (uRNA C) gene.,0,40,131,234,37.94,AGCCUUGCGCAGGGAGGUGUGAACGCAAGAUCCUCAGGUGAUUGUUCACUAGUGCAAUACUAUAUCCGGUACUCCUUCGGGGAAAGUUUGCUACCCACCACGGG,M25777.1/131-234,131-234,0,103,M25777.1/131-234
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,24915,X58844.1,1,sp|X58844.1|TTU41 T.thermophila U4.1 snRNA,0,41,2,130,91.48,ACCUCGCGACAGGGGCAAUAUAGCAGCAAGUGACGGUUAACUGAUGCGCUAUUAUUGCUAGUUGAAAACUACUUCAAUAAGUGGAAACGACGCUUGCGUCGGGUCCCAAUUUCUGGAAGGUCGUAUGAC,X58844.1/2-130,2-130,0,128,X58844.1/2-130
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7155,AC097268.10,1,sp|AC097268.10|AC097268 Pan troglodytes  BAC RP43-43O8 (Roswell Park Cancer Institute) complete sequence.,1,42,121408,121258,43.58,AGCUUUGUGCAGUGGCAGUAUCGUAGCCAGUGAGGUUUAUCGGAGGUGUGAUCACUGCUAAUUGAAAACUUUUCUAUAAAGGAACUGGUCUGUAGUUAAAAAAAAAAAAUCAGUGUCACAAAGGACAAGGAAAUAUGCAACAUGUAAUCUU,AC097268.10/121408-121258,121408-121258,0,150,AC097268.10/121408-121258
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4600,AC012104.6,1,sp|AC012104.6|AC012104 Mus musculus chromosome ; clone CT7-478J15; complete sequence.,1,43,122955,122833,41.60,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAACUGAAUUAGCUCCUGAGCAGGCCAACUGCCUUCUACAUGAGCCCAAGUCUCGCCCGAGCUA,AC012104.6/122955-122833,122955-122833,0,122,AC012104.6/122955-122833
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4703,AC068665.3,1,sp|AC068665.3|AC068665 Mus musculus chromosome 5 clone RP23-426K16 strain C57BL6/J; complete sequence.,1,44,182336,182208,17.87,AGCUUUGUGCAGUGGCAGUACUGUAGGUAGGUUUAUCUGAGGCGCGAUUAUUGCUAAUUGAAAAUUGGGAUACAUAUAUUUCAAUUCAUAGUAACCUGUGGUGACUGGCCACUAUAUAAAAUAGUAUAG,AC068665.3/182336-182208,182336-182208,0,128,AC068665.3/182336-182208
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4792,AC079245.35,1,sp|AC079245.35|AC079245 Mus musculus chromosome 9 clone rp23-426k2 strain C57BL/6J; complete sequence.,1,45,173972,173840,22.02,AGCUUUGCGUAGUGGCAAUAUCAUAGCCAAUGAGGUUUAUCCAAGGGGCAAUUAUUGCUAAUUAAAGGCAACUCUUUAAAAAACAAAUAAGCAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGUGUGUGUG,AC108950.4/100524-100656 AC079245.35/173972-173840,173972-173840,0,132,AC079245.35/173972-173840
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4840,AC084070.57,1,sp|AC084070.57|AC084070 Mus musculus chromosome 5 clone rp23-268d19 strain C57BL/6J; complete sequence.,0,46,331438,331557,47.24,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCUGAGGCGCGAUUAUUGCAAUUGAAAAACCCUCACGGUCAGCCCCUUUUGCAGCUUUGAUUGGUUGUAACUGCUUAGAAG,AC084070.57/331438-331557 AC084322.17/25559-25678,331438-331557,0,119,AC084070.57/331438-331557
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4856,AC084322.17,1,sp|AC084322.17|AC084322 Mus musculus chromosome 5 clone rp23-376e18 strain C57BL/6J; complete sequence.,0,47,25559,25678,47.24,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCUGAGGCGCGAUUAUUGCAAUUGAAAAACCCUCACGGUCAGCCCCUUUUGCAGCUUUGAUUGGUUGUAACUGCUUAGAAG,AC084070.57/331438-331557 AC084322.17/25559-25678,25559-25678,0,119,AC084322.17/25559-25678
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5328,AC108950.4,1,sp|AC108950.4|AC108950 Mus musculus chromosome 9 clone RP23-458E21; complete sequence.,0,48,100524,100656,22.02,AGCUUUGCGUAGUGGCAAUAUCAUAGCCAAUGAGGUUUAUCCAAGGGGCAAUUAUUGCUAAUUAAAGGCAACUCUUUAAAAAACAAAUAAGCAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGUGUGUGUG,AC108950.4/100524-100656 AC079245.35/173972-173840,100524-100656,0,132,AC108950.4/100524-100656
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5425,AC112662.7,1,sp|AC112662.7|AC112662 Mus musculus; clone RP23-467F2; complete sequence.,0,49,49134,49276,12.73,AGUUUUGAUCAGUGGCAAAAUGGAAAUCAGUGAGCUUUACCUGACGGUUGAUUAUUGCUCACUGAAAACAAUUGUAUAAAUCCACACCAAUAGUAUCAGGAUGGAAACAGAAUAGACAAGCAAACUAAGCAACUCAUUCAUGU,****    NEW  HIT  #2  ****,,2,0,AC112662.7/49134-49276
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5434,AC113004.13,1,sp|AC113004.13|AC113004 Mus musculus; clone RP23-250M13; complete sequence.,0,50,176261,176409,63.86,AGCUUUGUGUAGUAGCCAUAUUGUAGCCAGUGAGGUUUAUCUGAGGCAAAAUUAUUGCUAAUUGAAAUUCUUCCCAAUACAUUGCCGCAACAACUUGCAAUACAGUCGGCAUUGACAAUUGUUGGCAGGAUGUAUGGAGACUAAAUAAC,AC113004.13/176261-176409,176261-176409,0,148,AC113004.13/176261-176409
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5444,AC113127.6,1,sp|AC113127.6|AC113127 Mus musculus; clone RP23-352H13; complete sequence.,1,51,162233,162084,24.06,AGCUUUGCACAGCAGCAGUAUCGUAGCCAAUGAGGCUUAUCCAAGGCAGGAUUAUUGUUAAUUGAAAACUGUUUUUCUUUUGUGCUGUAUUUAUUUAUUUAUUUAUUUAUUCAUUCAUUCAUUCAUUCAUUUUUUAUAGCAACAAAGACU,AC113127.6/162233-162084,162233-162084,0,149,AC113127.6/162233-162084
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5469,AC114005.5,1,sp|AC114005.5|AC114005 Mus musculus chromosome 8 clone RP23-179L18; complete sequence.,1,52,70581,70452,32.74,AGCUUUUCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCACAAUUAUUGCUAACUGAAAGAUUUAAAGAAAGAAAGUGAAAAAGAUCUCAGAAGAUGGAAAAACCUCCUAUGCUCAUAGAUC,AC114005.5/70581-70452,70581-70452,0,129,AC114005.5/70581-70452
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5618,AC117206.3,1,sp|AC117206.3|AC117206 Mus musculus chromosome 5 clone RP23-260L17; complete sequence.,0,53,840,975,20.60,AGCUUUCCAUAGUGGAAUUAUUGCAGCCAGUGAGGUUUAUCUGAGGCGUGGUUAUUGCUAAUUGAAAUUAUAGAUGCUGUCCAAUUGUUUUAUAGUAUUUUACCCACACCUUUUUCAAAAGGACUUCCAGAAAAUA,AC117206.3/840-975,840-975,0,135,AC117206.3/840-975
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6022,AC122057.3,1,sp|AC122057.3|AC122057 Mus musculus chromosome 9 clone RP24-468F14; complete sequence.,1,54,85081,84940,64.65,AUCUGCUCUUAGUUGUAGUAUCAUAGCUAAUGAGGUUUAUCCUAGGCACAAUUAUUGCUAAUUAAAAACUUUUCCCAAUACCCUGCCGUGACAACUUGCAGUACACUCAGCAAUUGGCAAUUUUUUACAGUCUCUACAGAGA,AC122057.3/85081-84940,85081-84940,0,141,AC122057.3/85081-84940
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,6055,AC122241.4,1,sp|AC122241.4|AC122241 Mus musculus chromosome 15 clone RP23-146M20; complete sequence.,0,55,105098,105239,29.06,AGCUUUGUGCAGUGGCAGGCUUGUAGCCGAUGAGGUUUAUCUGAGGGCGUGAUUAUUUCUAAUUGAAAACUUCAUUACUUAUUCAGGAUUGCUUACUCUAUUUGAAGGUCAUAUUUCCUUAAAUUCUAAGAGAUUUUUGAAG,AC122241.4/105098-105239,105098-105239,0,141,AC122241.4/105098-105239
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,7487,AC132684.3,1,sp|AC132684.3|AC132684 Mus musculus chromosome 9 clone RP23-277L20; complete sequence.,0,56,128360,128489,18.82,CGCAUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUUGGAGGCACGAUUAUUGCUAAUUGAAAGAAAGCAAACUGAGAAAGUCAUGGAUAACAAACAUGGAUAAGAAGUCUGUAGUCUGUGCUUCAG,AC132684.3/128360-128489,128360-128489,0,129,AC132684.3/128360-128489
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,7644,AE014182.1,1,sp|AE014182.1|AE014182 Mus musculus piebald deletion region section 10 of 11 of the complete sequence.,1,57,364170,364037,54.07,AGCUUUGUGCAGUGGCAGUUAUCGUAGCCAAUGAGGUUUAUCUGAGGCGUGAUUAUUGCUAGCUGAAGACUUUUCCCAGCCUCUGUCAUUAUACCAAAAUAGUUAAGAUGAUAAACACGGAAGCUUGCUUUAUG,AE014182.1/364170-364037,364170-364037,0,133,AE014182.1/364170-364037
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,23796,AL355176.10,1,sp|AL355176.10|AL355176 Mouse DNA sequence from clone RP21-505L19 on chromosome 5,1,58,130740,130600,66.50,AGCUUUAUACAUUGGUAGUGUUAUAGCCAGUGAUGUUUAUCUGAGGUGCAAUUAUAGCUAACUGAAAACUUUUCUGGAUACCCUGCUGUUAUAACUUGAAAUAUAGUUGGCAUUGGCAAUUUUUGAUAGUUUCUAUGGAAA,AL355176.10/130740-130600,130740-130600,0,140,AL355176.10/130740-130600
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,23801,AL359381.8,1,sp|AL359381.8|AL359381 Mouse DNA sequence from clone CT7-87K14 on chromosome 17,1,59,43846,43696,23.49,AGCUUUUCACAGUGGCAGUAUUGUAGCCAAUGAGGUUUAUCCAAGGCAAGAUUAUUGCUAAUUGAGAACAUUUCUCCUCCACGUGUGUGCAUGGCAGCCAUCUCCUUGCUGUCUGUGUUGAGUCACUGAUAAUAUAGUGAAAUUUCCAUAC,AL359381.8/43846-43696,43846-43696,0,150,AL359381.8/43846-43696
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24990,AL670851.6,1,sp|AL670851.6|AL670851 Mouse DNA sequence from clone RP23-414J20 on chromosome 4,1,60,159966,159825,101.11,AGCUUUGCGAAUUGGCUGUAUUGUAGUCCAUGAGGUUUAUCCGAGGCGCAAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCUGCCAUGAUGACUUGAAAUAAAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACUGAGAC,AL670851.6/159966-159825,159966-159825,0,141,AL670851.6/159966-159825
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25391,AL691413.5,1,sp|AL691413.5|AL691413 Mouse DNA sequence from clone RP23-309E11 on chromosome 11,1,61,109845,109717,26.00,AGCUUUGAGCACUAGCUAUAACCUGUCUUCUCUGAGGUGCAAUUGUUGCUAAUUGAAUUAUCCCAAUACCUUACCACGAUGACUUGAAAUAUAGUCAGCAUUGACAAUUCCUGAUAGUCUCUAUAGAGA,AL691413.5/109845-109717,109845-109717,0,128,AL691413.5/109845-109717
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,25854,AL732620.14,1,sp|AL732620.14|AL732620 Mouse DNA sequence from clone RP23-167G19 on chromosome 2,1,62,2320,2180,100.34,AGCUUUGCGUAGUGGCAGUAUUGUAGCCAGUGAGGUUUAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUCCCCAAUACCCUGUCAUGACUACCUGCAGUACAGUCAGCAUUGGCAAUUUCUGACAGUCUUUAUGGAGA,AL732620.14/2320-2180,2320-2180,0,140,AL732620.14/2320-2180
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26156,AL805952.11,1,sp|AL805952.11|AL805952 Mouse DNA sequence from clone RP23-125H10 on chromosome 4,0,63,38808,38930,13.93,AUUUGCACAGCAGCAAUGCUGUAGCCAGUGAAGUAUAUCUGGAGAACUACUGCUAGUUGAAAACUUUCUCCAAAUUCUUAAGGAUGCUCUUCCUCGUAGAUUUGGAGAAUGAAGGCCCUUGCC,AL805952.11/38808-38930,38808-38930,0,122,AL805952.11/38808-38930
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26454,AL833781.5,1,sp|AL833781.5|AL833781 Mouse DNA sequence from clone RP23-447J12 on chromosome 4,1,64,39540,39404,42.21,AGCUUUGCGCAGUGGCAGUAUAGUAGCCAAUGAGGCUUAUCCAAGGCGCGUUUAUUGCUAAUUGAAAACUUAAAAUAUGGAGAGAACCCCUGGGUAUUUACUAUACAGUUAGAUUAACUCUAUUUAGUUAGUCACAG,AL833781.5/39540-39404,39540-39404,0,136,AL833781.5/39540-39404
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26678,AL844867.3,1,sp|AL844867.3|AL844867 Mouse DNA sequence from clone RP23-17B8 on chromosome X,1,65,78490,78360,21.41,AGCUUUGUCCAGUGUCAGUAUCAUAGCCAGUGAGGUUUAUCCAAAGAAUGAUUAUUGCUAAUAGAUAGCUAGAGCUUUAGGCGAGUAUCAAGGCAUCCAUACGUCUGGGAAUGAUUAUAAUAUCCUUUGAC,AL844867.3/78490-78360,78490-78360,0,130,AL844867.3/78490-78360
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26997,AL928715.10,1,sp|AL928715.10|AL928715 Mouse DNA sequence from clone RP23-373D16 on chromosome 2,1,66,3810,3658,22.51,AGCUUGGCACAGUGGCAGUAUUGUAGCCAAUGAAGUUUAUCAGAGGUGCAAUUAUUACUAAUGGGAAGUUUGAACCAAUAUACUCUCUCCAAAACCCACUCAUUCUAUAGAAAUUCUUGCCAACGAGAAUUCCAUAUAUGAACCCCAGGGUAC,AL928715.10/3810-3658,3810-3658,0,152,AL928715.10/3810-3658
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,76728,M10328.1,1,sp|M10328.1|MMUR57S Mouse 5.7S U4 small nuclear RNA type a.,0,67,2,142,130.89,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00479.1/2-142 K00473.1/2-142 M10328.1/2-142 AK024809.1/1-141 AC004263.1/99622-99482 M15957.1/271-411,2-142,0,140,M10328.1/2-142
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,76729,M18004.1,1,sp|M18004.1|MMUR57T Mouse 5.7S U4 small nuclear RNA type b.,0,68,2,142,129.24,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00478.1/2-142 K00472.1/2-142 M18004.1/2-142 V00592.1/1-141 K00477.1/2-142,2-142,0,140,M18004.1/2-142
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,2285,AB023028.1,1,sp|AB023028.1|AB023028 Arabidopsis thaliana genomic DNA; chromosome 5; TAC clone:K20J1.,1,69,96,1,48.08,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCU,AB023028.1/96-1,96-1,0,95,AB023028.1/96-1
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,2591,AB026295.2,1,sp|AB026295.2|AB026295 Oryza sativa (japonica cultivar-group) genomic DNA; chromosome 6; clone:P0681F10.,1,70,157499,157349,91.41,AUCUUUGCGCUUGGGGCAAUGACGCAGCUUAUGAGGUUAUACCGAGGCGCGUCAAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUUGGCCCACCCGGGCCACUGAGAAUUUCUGGAAGGGCUCUCUCUCUUCGGAGAGAGUAAAGCC,AB026295.2/157499-157349,157499-157349,0,150,AB026295.2/157499-157349
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,8693,AC005405.1,1,sp|AC005405.1|AC005405 BAC F18A17 from chromosome V containing TINY at 60.5 cM; complete sequence.,1,71,5525,5375,119.67,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUAGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC,AC005405.1/5525-5375,5525-5375,0,150,AC005405.1/5525-5375
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,8969,AC009322.1,1,sp|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence; complete sequence.,0,72,17890,18036,84.98,AGCUAGUGCUAUAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCAUGGGCCUGGGCUUGACCUAUGGCCUUUGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC,AC011717.6/23054-22908 AC009322.1/17890-18036,17890-18036,0,146,AC009322.1/17890-18036
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9031,AC011717.6,1,sp|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence; complete sequence.,1,73,23054,22908,84.98,AGCUAGUGCUAUAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCAUGGGCCUGGGCUUGACCUAUGGCCUUUGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC,AC011717.6/23054-22908 AC009322.1/17890-18036,23054-22908,0,146,AC011717.6/23054-22908
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9081,AC015986.4,1,sp|AC015986.4|AC015986 Arabidopsis thaliana chromosome 1 BAC T2E12 genomic sequence; complete sequence.,1,74,23477,23351,30.54,AUCUUUGCGCUUGUGCAAAAUGACGCAGCUAAUGAGGUCUUAGUCUAAUACUGGUUGAAAACUAUUUCCAAACAUCUUCCUAGGCCUAGGCUUAUUUUGGACUUUCUAGAAUUUGUGGAAGUGCAUC,AC016447.5/224-98 AC015986.4/23477-23351,23477-23351,0,126,AC015986.4/23477-23351
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9082,AC016041.5,1,sp|AC016041.5|AC016041 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I; complete sequence.,0,75,932,1082,120.96,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUGGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC,AC016041.5/932-1082,932-1082,0,150,AC016041.5/932-1082
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9085,AC016447.5,1,sp|AC016447.5|AC016447 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence; complete sequence.,1,76,224,98,30.54,AUCUUUGCGCUUGUGCAAAAUGACGCAGCUAAUGAGGUCUUAGUCUAAUACUGGUUGAAAACUAUUUCCAAACAUCUUCCUAGGCCUAGGCUUAUUUUGGACUUUCUAGAAUUUGUGGAAGUGCAUC,AC016447.5/224-98 AC015986.4/23477-23351,224-98,0,126,AC016447.5/224-98
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9093,AC016827.7,1,sp|AC016827.7|AC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence; complete sequence.,1,77,17430,17280,117.82,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUGGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUUGGGGUAAAGCC,AC016827.7/17430-17280,17430-17280,0,150,AC016827.7/17430-17280
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9254,AC068901.8,1,sp|AC068901.8|AC068901 Arabidopsis thaliana chromosome 1 BAC F1O3 genomic sequence; complete sequence.,1,78,66902,66753,23.10,AUCGGCGCUUGGGGCACUGAUGCAAAUAGUGAUAUUUUAACUGAGGCACGUCUAUUACUUGCUGGUUGAAAACUGUUUCUAAACUUUCUCUUCGAUUUGGGCUUGGGUUUGGGCUUGAACCACGGCCUUUGAAUUUUUUUCCAAAGAUUC,AC068901.8/66902-66753,66902-66753,0,149,AC068901.8/66902-66753
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9264,AC069160.7,1,sp|AC069160.7|AC069160 Arabidopsis thaliana chromosome 1 BAC T9I1 genomic sequence; complete sequence.,0,79,78990,79128,70.46,AUCUUUGCGCUUGGGGCAAUGACAUAGCUAAUGAGGUUUUAAACGAGACGCGUCUAUUGAUGGUUGACAACCAUUUCCACAACCCCAUCCUAGGCCUAAGCUUGUCUUUGGCCUUUGAGAAUUUCGAGACCAACACUAG,AC069160.7/78990-79128,78990-79128,0,138,AC069160.7/78990-79128
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9285,AC069556.4,1,sp|AC069556.4|AC069556 Genomic Sequence For Arabidopsis thaliana Clone T1G16 From Chromosome V; complete sequence.,0,80,53184,53319,116.50,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUAUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUGGGCCUCUGAGAAUUUCUGGAAGAGCUCC,AC069556.4/53184-53319,53184-53319,0,135,AC069556.4/53184-53319
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9896,AC137830.6,1,sp|AC137830.6|AC137830 Medicago truncatula clone mth2-33g10; complete sequence.,1,81,101635,101482,73.15,AUCUUUGUGUUUGGGGGCAAUGACACAGCUAACGAGCUUUUAACCAAGGCGUGUCUAUUGCUGCUGGUUGAAAACUAUUUUCAAAUCCCUUCUUAAGCUUAAGACAACUCAAGUCUUUGAGAAUUACUGGAAGGACUCCCUUUAAAGUAAAGUC,AC137830.6/101635-101482,101635-101482,0,153,AC137830.6/101635-101482
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,99395,AP003760.4,1,sp|AP003760.4|AP003760 Oryza sativa (japonica cultivar-group) genomic DNA; chromosome 1; BAC clone:OSJNBb0063G05.,1,82,10053,9903,97.16,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUAAUACCGAGGCGCGUCAAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUUGGCCCGUCAGGGCCACUGAGAAUUUCUGGAAGGGCUCCUUCUCUUCGGGGAGGGUAAAGCC,AP003760.4/10053-9903,10053-9903,0,150,AP003760.4/10053-9903
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,100144,AP006099.1,1,sp|AP006099.1|AP006099 Lotus corniculatus var. japonicus genomic DNA; chromosome 5; clone:LjT03D07; TM0180a.,0,83,69439,69589,108.40,AUCUUUGCGCUUGGGGCAAUGACGCAGCUUAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUAGGCCUGGGUUCACCCCUGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUUGGGGUAAAGCU,AP006099.1/69439-69589,69439-69589,0,150,AP006099.1/69439-69589
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,101415,AC002131.1,1,sp|AC002131.1|ATAC2131 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence; complete sequence.,0,84,107603,107752,118.02,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGUUCCCUUCGGGGUAAAGC,AC002131.1/107603-107752,107603-107752,0,149,AC002131.1/107603-107752
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,101505,AF007270.1,1,sp|AF007270.1|ATAF7270 Arabidopsis thaliana BAC F2P16; complete sequence.,1,85,95661,95526,119.59,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGAGCUCC,AF007270.1/95661-95526,95661-95526,0,135,AF007270.1/95661-95526
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,103562,AJ505691.1,1,sp|AJ505691.1|ATH505691 Arabidopsis thaliana partial putative U4.1 small nuclear RNA (U4.1 snRNA gene); clone Ath-188a; 5' end incomplete,0,86,1,136,73.26,GGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGUUCCCUUCGGGGUAAAGC,AJ505691.1/1-136,1-136,0,135,AJ505691.1/1-136
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,103563,AJ505692.1,1,sp|AJ505692.1|ATH505692 Arabidopsis thaliana partial putative U4.1 small nuclear RNA (U4.1 snRNA gene); clone Ath-188b; 5' end incomplete,0,87,1,135,69.72,CAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUGGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC,AJ505692.1/1-135,1-135,0,134,AJ505692.1/1-135
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119574,X67145.1,1,sp|X67145.1|ATU41SN A.thaliana U4.1 snRNA gene,0,88,194,344,123.34,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUAGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUUGGGGUAAAGCC,X67145.1/194-344,194-344,0,150,X67145.1/194-344
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119577,X67146.1,1,sp|X67146.1|ATU42SN A.thaliana U4.2 snRNA gene,0,89,296,445,118.16,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUGGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUUGGGUAAAGCC,X67146.1/296-445,296-445,0,149,X67146.1/296-445
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119585,X67147.1,1,sp|X67147.1|ATU43SN A.thaliana U4.3 snRNA pseudogene,0,90,239,376,71.00,AUCGUUGCGCUUGGACAAUGACACAUCUAAUGAGGUUCUAACCGAGAUGCGUCUAUGCUGGUUGAAAACUAUUUCUAAACCCCCUCCUAACCCUAAGUUUGUCUUGGGCCUUGGAGAAUUUUUGUAUUUCCUUUGGGU,X67147.1/239-376,239-376,0,137,X67147.1/239-376
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,158266,AY198655.1,1,sp|AY198655.1|AY198655 Arabidopsis thaliana sequence flanking Ds3 end of Ds-EnhancerTrap insertion from line ET2049.,1,91,478,352,30.14,AGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCAUGGGCCUGGGCUUGACCUAUGGCCUUUGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC,AY198655.1/478-352,478-352,0,126,AY198655.1/478-352
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,182775,X71485.1,1,sp|X71485.1|CRRNAU4A C.reinhardtii U4 snRNA,0,92,1,134,58.79,AUCCUUGCGCUUGGGGCAGUGUCGCAGACUGUGAGGUCUAACCGAGUCGCGACAGUGCCAGUUGAAAACUUAUUCCAUCCCCGUCGGUCGUCGUUCUUCGGAACGCUUCCGCAAUUUCUGUCGGGCCUUUUGGC,****    NEW  HIT  #3  ****,,2,0,X71485.1/1-134
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,202810,X15931.1,1,sp|X15931.1|PSSNU4A Pea U4 snRNA (clone pPSUN4.1),0,93,1,150,115.06,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUGGGCCUGGGCUUUGCUUGGGCCUUUGAGAAUUUCUGGAAGGGCUCCCUCUGGGUAAAGCC,X15931.1/1-150,1-150,0,149,X15931.1/1-150
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,202811,X15932.1,1,sp|X15932.1|PSSNU4B Pea U4 snRNA (clone pPSU4.2),0,94,1,149,126.33,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUUCUAACCGAGGUGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUAGGCUUGAGGCAACUCAAGCCUUUGAGAAUUUUUGGAAGGACUCCCUUAGGGUAAAGUC,X15932.1/1-149,1-149,0,148,X15932.1/1-149
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,202812,X15933.1,1,sp|X15933.1|PSSNU4C Pea U4 snRNA (clone pPSU4.3),0,95,1,149,128.35,AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUAGGCUUGAGGUAACUCAAGCCUUUGAGAAUUUCUGGAAGGGCUCCCUUAGGGUAAAGUC,X15933.1/1-149,1-149,0,148,X15933.1/1-149
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,212198,X07112.1,1,sp|X07112.1|VFU4A Vicia faba U4A small nuclear RNA,0,96,1,152,124.22,AUCUUUGCGCUUGGGGCAAUGACGUAGCUAGUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUGCCAAACCCCUCUUAGGCUUGGGCUUGGGUUCAAGCCUUUGAGAAUUUCUGGAAGGACUCCCUUUGGGGUAAAGUC,X07112.1/1-152,1-152,0,151,X07112.1/1-152
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,212199,X07113.1,1,sp|X07113.1|VFU4B Vicia faba U4B small nuclear RNA,0,97,1,150,125.03,AUCUUUGCGCUUGGGGCAAUGACGUAGCUAGUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCUAAACCCCCUCUUAGGCUUGAGUUUAACUCAAGCCUUUGAGAAUUUCUGGAAGGACUCCUUCGGGGUAAAGUC,X07113.1/1-150,1-150,0,149,X07113.1/1-150
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,1527,AC131886.5,1,sp|AC131886.5|AC131886 Rattus norvegicus 4 BAC CH230-53A1 (Children's Hospital Oakland Research Institute) complete sequence.,0,98,52109,52256,60.30,AGCUUUGCGCAGUGGCAGUAUCGUAGCCUAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCUAAAGAGAAAUUAAGUACCUCAUCUAAGACUCCUUUAGAUGCAAUAGAGCAUAGUUUGUAAGCUCCACAAAU,AC131886.5/52109-52256,52109-52256,0,147,AC131886.5/52109-52256
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,13732,K00782.1,1,sp|K00782.1|RN4A Rat U4 small nuclear RNA.,0,99,2,136,108.43,AACUUUGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGUCUCUACGGAGA,K00782.1/2-136,2-136,0,134,K00782.1/2-136
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21450,M26115.1,1,sp|M26115.1|RNUGPSA Rat U4-1 small nuclear RNA pseudogene.,0,100,29,122,21.53,AGACUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAACAUAAUAGGUUACACAGACAAUUAAU,M26115.1/29-122,29-122,0,93,M26115.1/29-122
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21451,M26116.1,1,sp|M26116.1|RNUGPSB Rat U4-2 small nuclear RNA pseudogene.,0,101,15,107,35.38,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUAAAGAAAAGUAGUCAAUAGAAU,M26116.1/15-107,15-107,0,92,M26116.1/15-107
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21452,M26117.1,1,sp|M26117.1|RNUGPSC Rat U4-3 small nuclear RNA pseudogene.,0,102,1,91,21.74,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAGUCAACAUUAGGGCUGGAGAGAUA,M26117.1/1-91,1-91,0,90,M26117.1/1-91
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21453,M26118.1,1,sp|M26118.1|RNUGPSD Rat U4-4 small nuclear RNA pseudogene.,0,103,31,122,15.55,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUUCAAGGUGCCAUUACUGCUAAUUGAAAACUAUUAUUAUCAGAGAAAACAGGU,M26118.1/31-122,31-122,0,91,M26118.1/31-122
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21532,K00477.1,1,sp|K00477.1|RNURU4A Rat U4a small nuclear RNA (snRNA).,0,104,2,142,129.24,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00478.1/2-142 K00472.1/2-142 M18004.1/2-142 V00592.1/1-141 K00477.1/2-142,2-142,0,140,K00477.1/2-142
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21533,K00478.1,1,sp|K00478.1|RNURU4B Rat U4b small nuclear RNA (snRNA).,0,105,2,142,129.24,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00478.1/2-142 K00472.1/2-142 M18004.1/2-142 V00592.1/1-141 K00477.1/2-142,2-142,0,140,K00478.1/2-142
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21534,K00479.1,1,sp|K00479.1|RNURU4C Rat U4c small nuclear RNA (snRNA).,0,106,2,142,130.89,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00479.1/2-142 K00473.1/2-142 M10328.1/2-142 AK024809.1/1-141 AC004263.1/99622-99482 M15957.1/271-411,2-142,0,140,K00479.1/2-142
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,42594,M14136.1,1,sp|M14136.1|GGU4BX Chicken U4X and U4B small nuclear RNA genes.,0,107,1141,1281,127.81,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUAAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00476.1/2-142 M14136.1/1141-1281,535-675 1141-1281,0,140,M14136.1/1141-1281
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,42594,M14136.1,1,sp|M14136.1|GGU4BX Chicken U4X and U4B small nuclear RNA genes.,0,108,535,675,135.02,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAGUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGAGAGCCUCCCCGGAGG,M14136.1/535-675,535-675 1141-1281,0,140,M14136.1/535-675
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,42713,K00474.1,1,sp|K00474.1|GGURU4A Chicken U4a small nuclear RNA (snRNA).,0,109,2,142,126.16,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUAAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00475.1/2-142 K00474.1/2-142,2-142,0,140,K00474.1/2-142
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,42714,K00475.1,1,sp|K00475.1|GGURU4B Chicken U4b small nuclear RNA (snRNA).,0,110,2,142,126.16,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUAAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00475.1/2-142 K00474.1/2-142,2-142,0,140,K00475.1/2-142
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,42715,K00476.1,1,sp|K00476.1|GGURU4C Chicken U4c small nuclear RNA (snRNA).,0,111,2,142,127.81,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUAAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00476.1/2-142 M14136.1/1141-1281,2-142,0,140,K00476.1/2-142
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9474,AC002429.1,1,sp|AC002429.1|AC002429 Homo sapiens BAC clone GS1-200K5 from 7; complete sequence.,0,112,138105,138245,88.09,AGCUUUGUGCAGUGGCAGUAUCACAGCAAAUGAGGUUUAUCCUAGGCGUGAUUAUAGCUAAUUGAAGACUUUUCCCAAUAUCCCGCUGUGAGGACUUACAAUACAGUCGGCAUUAACAUUUUUUGGCAGUCUUUAUGGAGA,AC002429.1/138105-138245,138105-138245,0,140,AC002429.1/138105-138245
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9651,AC003108.1,1,sp|AC003108.1|AC003108 Human Chromosome 16 BAC clone CIT987SK-327O24; complete sequence.,0,113,5228,5367,85.56,AGCUUUGCACAGUGGCAGUACCGUAGCCAAUGAGAUUUAUCCGAGACGCGAUUAUUGCUAAUUGGAAAUUUUCCCAAUACCCCACCGUGAUGACUUGAAAUAUAAUCAGCGCUGGCAAUUUUUGACAGUCUCUACGGAGA,AC003108.1/5228-5367 AY236494.1/3184-3323,5228-5367,0,139,AC003108.1/5228-5367
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9854,AC004167.1,1,sp|AC004167.1|AC004167 Homo sapiens chromosome 17; clone HRPC1096F1; complete sequence.,1,114,76205,76065,108.10,AGCUUUGUGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGUGCUAUUACUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUAAUGACUUGAAAUAUAGUUGGCAUUCGCAAUUUUUGACAGUCUCUAUGGAGA,AC004167.1/76205-76065,76205-76065,0,140,AC004167.1/76205-76065
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9931,AC004263.1,1,sp|AC004263.1|AC004263 Homo sapiens PAC clone 278C19 from 12q; complete sequence.,1,115,100956,100816,126.10,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCACUGGCAAUUUUUGACAGUCUCUACGGAGA,M15956.1/271-411 AC004263.1/100956-100816,99622-99482 100956-100816,0,140,AC004263.1/100956-100816
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9931,AC004263.1,1,sp|AC004263.1|AC004263 Homo sapiens PAC clone 278C19 from 12q; complete sequence.,1,116,99622,99482,130.89,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA,K00479.1/2-142 K00473.1/2-142 M10328.1/2-142 AK024809.1/1-141 AC004263.1/99622-99482 M15957.1/271-411,99622-99482 100956-100816,0,140,AC004263.1/99622-99482
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,106,AC004662.1,1,sp|AC004662.1|AC004662 Homo sapiens chromosome 1; clone hRPC.842_A_23; complete sequence.,1,117,19192,19066,43.73,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAGUGAGGUUUAUCCGAGGCGCAAUUAUUGCUAAUUGAAAUUAUGAUUUUCCUACUUUAUUUAGUAUUGGUAGAUCCUUCAUUAUUGAACUCAGACAUCC,AC004662.1/19192-19066 AL133332.12/21171-21045 AC104332.2/95482-95356,19192-19066,0,126,AC004662.1/19192-19066
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,440,AC005064.3,1,sp|AC005064.3|AC005064 Homo sapiens clone CTB-107G13; complete sequence.,1,118,67139,67019,16.12,AACUUUGUGCAAUGGCAGUAUCAUAGCCAGUGGGAUUUAUCCAAAGCACAAUUAUUGCUAGAUGAAAAGAUCAUUGUAUUUCUACAUACUAGCAAUGAACAAAUGUUUUUUAAAACUCUUC,AC005064.3/67139-67019,67139-67019,0,120,AC005064.3/67139-67019
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,870,AC005726.1,1,sp|AC005726.1|AC005726 Homo sapiens chromosome 17; clone  hRPK.192_H_23; complete sequence.,0,119,55404,55518,13.57,AGCUUUGGGCAGUGGCAGUAUCAUAGCCAGUAAGGUUUAUCCGAGGCACAAUUAUUACUGAUUAUUGCCAAUUGAAACAGUGAGUUAUGAUCAUGCCACUGCACUCCAGCUUGGG,AC005726.1/55404-55518,55404-55518,0,114,AC005726.1/55404-55518
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1274,AC006362.2,1,sp|AC006362.2|AC006362 Homo sapiens PAC clone RP5-1173P7 from 7; complete sequence.,0,120,6318,6449,36.54,AGCUUUGUGCAGUGGCAGUAAGGUAGCCAAUGAGGUUUAUUUGAGGCGCAAUUAUUGCUAAUUGAAACAGAUUCGUAGUGCACAGAGAGUGGGAUUUGUAGUUAACUACAUCUAGAUUUUUAAAUCCCCACC,AC006362.2/6318-6449,6318-6449,0,131,AC006362.2/6318-6449
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1536,AC007097.4,1,sp|AC007097.4|AC007097 Homo sapiens BAC clone RP11-332E22 from 7q35-q36; complete sequence.,1,121,24607,24467,88.09,AGCUUUGAACACUGGCAGUAUCGUAGCCAGUCAGGUUUAUCUGAGGUGUGAUUACUGCUGAUGGAAAACUUUUCCUGAUACCCUGCCAUGAUGACUUGUAAUGCAGUGAGCACUGGCAAUUUUUGACAGUCUCCAUGGAGA,AC007097.4/24607-24467,24607-24467,0,140,AC007097.4/24607-24467
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1797,AC007570.23,1,sp|AC007570.23|AC007570 Homo sapiens 12 BAC RP11-968O1 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,122,38056,38193,64.73,AUUGUGCAGUGUCAGUGUUGUCGCCAGUGAGGUUUACCCAAGAUGUGAUUAUUGCUGAUUGAAAACUUUUCCCACUACCCCACCAUGAUGACUUGAAAUAUAGUCAACAUUGGCAGUUUUUGACAGUCUUUAUGGAGA,AC007570.23/38056-38193,38056-38193,0,137,AC007570.23/38056-38193
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1987,AC008040.7,1,sp|AC008040.7|AC008040 Homo sapiens 3 BAC RP11-379K17 (Roswell Park Cancer Institue Human BAC Library) complete sequence.,1,123,46169,46042,60.03,AGCUUUGUGCAGUGGCCAUUUCAUAGCCAGUGAAGUUUAUCUGAGGCACUUGCUAAUUGAAAACUUUUCUCAAUACCCUGCCAUGAUGAAAUAUGGUUGGCACUGGCAAUUUUUGAGACUCUAUGGAG,AC008040.7/46169-46042,46169-46042,0,127,AC008040.7/46169-46042
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1994,AC008055.7,1,sp|AC008055.7|AC008055 Homo sapiens 12 BAC RP11-718L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,124,186865,186728,85.48,AGCUUUGCACAGUGGCAGUAUGGUAGCCCAUGAGGUUUAUCCGAGGCCCGAUUAUGGCUAGUUGAAAAUGUUUCCCAAUACCCUGCCAUGAUGAUUUAAAAUAUAGUCGGCAUGGGCAAUUUUUGCAGUCUGUAUUGA,AC008055.7/186865-186728,186865-186728,0,137,AC008055.7/186865-186728
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2144,AC008438.6,1,sp|AC008438.6|AC008438 Homo sapiens chromosome 5 clone CTC-329D1; complete sequence.,1,125,55843,55723,34.76,AGAUUUGCUCAGUGGCAGUAUCAUAGCCAAAGGCAUCAUUAUUGCUAAUUGAAAACUUUUCCCAAUAACCUGCCAUGGCCUUGAAAUAUAGUAAGCAUUGGGAAUUUUGAGUCUCUAUGGA,AC008438.6/55843-55723 AC011399.6/168434-168554,55843-55723,0,120,AC008438.6/55843-55723
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2547,AC008949.9,1,sp|AC008949.9|AC008949 Homo sapiens chromosome 5 clone CTD-2335O24; complete sequence.,0,126,154298,154443,11.36,AGCUUUAUGCAGCAGCAACAUCAUAGACAAUGGGGUUUAUCUGAAGUGCGAUUAUUGCUAAUUGAGAAAAAAAAUAAAGGCUGACUGCCAUCUAUAAAACAAGUCAUCGGCCCACCUGAUUGAUGAAGUGCCCCCUCCACUGGGAA,AC034240.5/34587-34732 AC008949.9/154298-154443,154298-154443,0,145,AC008949.9/154298-154443
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2563,AC008966.9,1,sp|AC008966.9|AC008966 Homo sapiens chromosome 5 clone CTD-2366F13; complete sequence.,1,127,141722,141595,12.48,AGUUUUGCAGUGGCAGUGUGAUGACCAAUGAGGUUUAUCUGAGGUGCGAUUAUUGCUAAUUGAAGCAGUGCCCUGGAGGUACUAGAAUUCCUUAUCAGUUUCAUACAAUUUCAGGGCUUGAUUUUUUA,AF512556.1/14152-14279 AC008966.9/141722-141595 AC008973.6/88822-88695,141722-141595,0,127,AC008966.9/141722-141595
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2570,AC008973.6,1,sp|AC008973.6|AC008973 Homo sapiens chromosome 5 clone CTD-2380L12; complete sequence.,1,128,88822,88695,12.48,AGUUUUGCAGUGGCAGUGUGAUGACCAAUGAGGUUUAUCUGAGGUGCGAUUAUUGCUAAUUGAAGCAGUGCCCUGGAGGUACUAGAAUUCCUUAUCAGUUUCAUACAAUUUCAGGGCUUGAUUUUUUA,AF512556.1/14152-14279 AC008966.9/141722-141595 AC008973.6/88822-88695,88822-88695,0,127,AC008973.6/88822-88695
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2702,AC009162.11,1,sp|AC009162.11|AC009162 Homo sapiens chromosome 16 clone RP11-76H6; complete sequence.,1,129,7428,7285,77.93,AGCUUUGUGCAGUGGCAGUAUCUUAACCAAUGAGGUUUAUCUGAGGCACAAUUAUUGCUAAUUGAAAACUUUUCCCAACACUGCCAUAAUGACUUGAGCUAUACUAGGCAUUGGCAAUUUAAUUUUUGACAGUCUCUACGGAGA,AC009162.11/7428-7285 AC126773.2/29195-29338,7428-7285,0,143,AC009162.11/7428-7285
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2822,AC009413.2,1,sp|AC009413.2|AC009413 Homo sapiens BAC clone RP11-459K11 from 2; complete sequence.,1,130,20206,20077,13.68,AGCUUUGAGUGGUGCUACCACCGUCGCCUCUGAGGUUUAACCGAGGCGCGAUUGUUGCUGAUUGAAAACAUGAGACCUAAUUCCAGCCCCCUCCUCCCUCCAGUGGCAGGCGGAGGCUCCACAUCCAUUU,AC009413.2/20206-20077,20206-20077,0,129,AC009413.2/20206-20077
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3036,AC009995.9,1,sp|AC009995.9|AC009995 Homo sapiens chromosome 8; clone RP11-373H15; complete sequence.,0,131,153632,153756,18.99,UUUGCACACUGGUCAUGUCAUAGCCAGUAAGGUUUAUCUGAGGUGUGAUUAUUGCUAAUUGACAGCUUUUCUAGAAGAGGAUUCCUUUCUUUUUGUCUCCUCAGGCAACUUUAUCGCAAAUAAUG,AC009995.9/153632-153756,153632-153756,0,124,AC009995.9/153632-153756
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3463,AC010733.8,1,sp|AC010733.8|AC010733 Homo sapiens BAC clone RP11-373L24 from 2; complete sequence.,0,132,64758,64897,66.13,AGCUUUGUGCAUUGGCAGUAUAGCCAAGUGAGGUUUAUCUUAGGAGUGGUUAUUGUUAAUUGAAAACUUUUUCCUAAUAUCCUGCUGUCAUGACUUGCAGUAUAGUCAGCAUUGGCAAUUUUUGACAGUCUUUUUGGAGA,AC010733.8/64758-64897,64758-64897,0,139,AC010733.8/64758-64897
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3548,AC010976.5,1,sp|AC010976.5|AC010976 Homo sapiens BAC clone RP11-286H15 from 2; complete sequence.,0,133,22903,23045,38.27,AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUACUCAAGGAGUGAUUAUUGCUAAUUGAAAAACUGAUGAACAUAUGAAGUGCAUGUCUGUAGCUUAAUAGUACAAAGUCAGCCAACUUGAGACCUUGGCUCAGGUA,AC010976.5/22903-23045 AC068282.8/151193-151335,22903-23045,0,142,AC010976.5/22903-23045
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3566,AC011005.7,1,sp|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14; complete sequence.,1,134,29429,29283,25.53,AGCUUUGCACAGUGGCAGUAUUGUAGCCGAUGAGGUUUAUCCAAGGCAUGAUUAUUGCUAAUUGAAAUUCAAAAAAAGCUGGGGGGAGAAAAAGGCCAGCAUGAAGAAAAAGAGGAAGGUACAGAAUGAUUGGAAUUGGCAGGUUAU,AC011005.7/29429-29283 AC018639.8/119980-119834,29429-29283,0,146,AC011005.7/29429-29283
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3722,AC011399.6,1,sp|AC011399.6|AC011399 Homo sapiens chromosome 5 clone CTB-25P15; complete sequence.,0,135,168434,168554,34.76,AGAUUUGCUCAGUGGCAGUAUCAUAGCCAAAGGCAUCAUUAUUGCUAAUUGAAAACUUUUCCCAAUAACCUGCCAUGGCCUUGAAAUAUAGUAAGCAUUGGGAAUUUUGAGUCUCUAUGGA,AC008438.6/55843-55723 AC011399.6/168434-168554,168434-168554,0,120,AC011399.6/168434-168554
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3802,AC011497.6,1,sp|AC011497.6|AC011497 Homo sapiens chromosome 19 clone CTB-50E14; complete sequence.,1,136,26582,26454,26.47,UGUGCGCAGUGGUAUUAUUGUAGCCAAUGAGGUUUAUCCGAGGUGCAAUUAUUGUGAAUGGGAAACUUUCGCAAUAACAUCAGCCAACAAGUGUCAUGGACCAUGAAGGCUUUGGGAGUUCAGAGCUAU,AC011497.6/26582-26454,26582-26454,0,128,AC011497.6/26582-26454
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3928,AC011811.42,1,sp|AC011811.42|AC011811 Homo sapiens clone b250a12; complete sequence.,1,137,52400,52231,40.34,AGCUUUGCACAGUGGCAGUAUCGUAGCCAAUGAGCUUUACCCGAGGCGCGAUUAUUGCUAGUUAAAUAUUUAUAAAAACCUUUCGAGCAGCGCCUGAACAAGAAUAGGUUCAGAGGAGACUCCGGUAGUCUGAGUUUGGGCUUGGCCCAGGGUGGGGAAAAGCCCUUGUC,AC011811.42/52400-52231 AC073476.6/39411-39580,52400-52231,0,169,AC011811.42/52400-52231
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3942,AC011884.8,1,sp|AC011884.8|AC011884 Homo sapiens chromosome ; clone RP11-17N6; complete sequence.,1,138,145219,145079,12.50,AGCUUUGUGCCGUGGCAGUAACCUAGUCAAUGAGGUUUCUCCAAGGCGCAGGUAUUGCUAAUUGAGAAAAAAUAAGAAAUACAGACUCUCGAGCCCCACCCAAACACAUUGAACCAAAACUAGCAUUUUAUCAAAACCCCA,AC090096.5/67818-67678 AC011884.8/145219-145079,145219-145079,0,140,AC011884.8/145219-145079
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4896,AC017099.11,1,sp|AC017099.11|AC017099 Homo sapiens BAC clone RP11-542D13 from 2; complete sequence.,1,139,175113,174973,90.70,AGCGUUGCGCGGUGGCCGUAUGGUGGCCAAUGAGGUUUAUCCGAAGCGCGAUUAUUGCUAAUUGAAAACUUUUCGCAAUACCCCACCGUGACGACUUGCAAUAUAGUCGACAUCGGCAAUUUUUAACAGUCUCUACGGAGA,AC017099.11/175113-174973,175113-174973,0,140,AC017099.11/175113-174973
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4906,AC018358.20,1,sp|AC018358.20|AC018358 Homo sapiens 3 BAC RP11-333B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,140,48038,47913,40.02,AGCUUUGCACAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUUACUAGUUGAAAAUUUUCCCCAAUACCCCGCCGUGACGACUUGAGAUAGAGGCAGCAUUGGCAAUUUUUGACAGUUUUUAGGGAUA,AC018358.20/48038-47913,48038-47913,0,125,AC018358.20/48038-47913
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4982,AC018616.5,1,sp|AC018616.5|AC018616 Homo sapiens chromosome 8; clone RP11-157I4; complete sequence.,1,141,4891,4759,12.32,AGCUUUGUGCAGUGGCAGAACAUAGCCAUUGAGGUUCAUCUGAGGUGUAAUUAUUGCUAAUAAAAAAAAAAAUGAAGACAGGGAGAAUUAGGAUGGGGAUGAAGCAGCACCAGAAGUUAAAGCAAGUUGACUA,****    NEW  HIT  #4  ****,,2,0,AC018616.5/4891-4759
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4996,AC018639.8,1,sp|AC018639.8|AC018639 Human Chromosome 7 clone RP11-128A6; complete sequence.,1,142,119980,119834,25.53,AGCUUUGCACAGUGGCAGUAUUGUAGCCGAUGAGGUUUAUCCAAGGCAUGAUUAUUGCUAAUUGAAAUUCAAAAAAAGCUGGGGGGAGAAAAAGGCCAGCAUGAAGAAAAAGAGGAAGGUACAGAAUGAUUGGAAUUGGCAGGUUAU,AC011005.7/29429-29283 AC018639.8/119980-119834,119980-119834,0,146,AC018639.8/119980-119834
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5427,AC020978.10,1,sp|AC020978.10|AC020978 Homo sapiens chromosome 16 clone RP11-96D1; complete sequence.,0,143,11527,11663,29.11,AGCUUUGAGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCAAGGCGUAAUUAUUGGUAGUUGAAACUCAAGAGUUGAGCCCCAUAAGAAUUCCAAUUUGCUUAAAGCAAAUGUAGGUUUUGUUUGCGUCUCCAUU,AC099521.2/9689-9553 AC020978.10/11527-11663 AC024903.17/9688-9552,11527-11663,0,136,AC020978.10/11527-11663
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5521,AC021305.9,1,sp|AC021305.9|AC021305 Homo sapiens chromosome 8; clone RP11-140B16; complete sequence.,1,144,150467,150337,36.40,AGCUUUGCGUGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAACAAAAUGGAAGACAGGUGACUUUUCCCCUCCCUUGAAUAAACACUUCUUCCACACAUGGAUUUC,AC021305.9/150467-150337 AC133330.2/150510-150380 AF267168.3/166510-166380 AF254981.4/104674-104544,150467-150337,0,130,AC021305.9/150467-150337
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5682,AC022079.16,1,sp|AC022079.16|AC022079 Homo sapiens 12 BAC RP11-425D17 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,145,45662,45790,11.14,AACUUUGCACAAUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCAAGGCGGAAUUACUGCUGACAGAAUAGAUGUUUGCUUAAAAGACUUUAUGCAGAAUCAUGAGAAUCUAAGCACCUAAACUUAAGGUG,AC022079.16/45662-45790,45662-45790,0,128,AC022079.16/45662-45790
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5980,AC023043.8,1,sp|AC023043.8|AC023043 Homo sapiens chromosome 18; clone RP11-49I11; complete sequence.,0,146,104876,104995,49.88,AGCUUUGUACAGUGCCAGUAUCAGAGCCAAUGAGGUUUUUCUGAGGUGUGAUUAUUGCUAAUUGAAAACUUUUCCCAAUUAAAAACAAAAACAAAAUAAAAUUUAAAAAACACACCAGAG,AC023043.8/104876-104995 M11384.1/34-153 X02651.1/53-172,104876-104995,0,119,AC023043.8/104876-104995
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6337,AC024903.17,1,sp|AC024903.17|AC024903 Homo sapiens 16 BAC RP11-71L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,147,9688,9552,29.11,AGCUUUGAGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCAAGGCGUAAUUAUUGGUAGUUGAAACUCAAGAGUUGAGCCCCAUAAGAAUUCCAAUUUGCUUAAAGCAAAUGUAGGUUUUGUUUGCGUCUCCAUU,AC099521.2/9689-9553 AC020978.10/11527-11663 AC024903.17/9688-9552,9688-9552,0,136,AC024903.17/9688-9552
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6524,AC025569.37,1,sp|AC025569.37|AC025569 Homo sapiens 12 BAC RP11-588H23 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,148,97145,97286,41.47,AUCCUUUAAGUACAUUUUCAGCUUCAUGCAGCCAGUGAGGUUUUUCUGAGGUGUGAUUAUUGCUAAUUGAAAACUUCCCAAUACCCGGUGGUGAUGAUUUGCAAUACAGUUGGCAUCGGAAAAUUUUGACAAUCUCUACAGA,AC025569.37/97145-97286,97145-97286,0,141,AC025569.37/97145-97286
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7035,AC027373.11,1,sp|AC027373.11|AC027373 Homo sapiens chromosome 8; clone RP11-521I2; complete sequence.,0,149,96466,96598,53.47,AACUUUGUGCAAUGGCAGCCAAUGAGGUUUACCUGAGGUGUGAUUAUUGCUAAUGGAAAACUCUUCUCAGUACCCUGCCACGAUGAGUUGAAAUAUAGUCAGCAUUGGCAAUUUUUGACCGUCUCUCCAGAGA,AP004293.1/1026-894 AC079093.16/111536-111404 AP004195.1/127620-127488 AC027373.11/96466-96598,96466-96598,0,132,AC027373.11/96466-96598
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7155,AC034240.5,1,sp|AC034240.5|AC034240 Homo sapiens chromosome 5 clone CTD-2335C11; complete sequence.,0,150,34587,34732,11.36,AGCUUUAUGCAGCAGCAACAUCAUAGACAAUGGGGUUUAUCUGAAGUGCGAUUAUUGCUAAUUGAGAAAAAAAAUAAAGGCUGACUGCCAUCUAUAAAACAAGUCAUCGGCCCACCUGAUUGAUGAAGUGCCCCCUCCACUGGGAA,AC034240.5/34587-34732 AC008949.9/154298-154443,34587-34732,0,145,AC034240.5/34587-34732
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7227,AC040171.4,1,sp|AC040171.4|AC040171 Homo sapiens chromosome 16 clone RP11-52D13; complete sequence.,1,151,103906,103766,94.57,AGCUUUGCCCAGUGGCGGCAUUGUAGCCAAUGAGGUUUACCUGAAGUACAAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCUCCAUGACGACUUGAAAUAUAGUCAGCACUGGCAAUUUUUGACCGUCUCUACAGAGA,AC040171.4/103906-103766,103906-103766,0,140,AC040171.4/103906-103766
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7318,AC051642.5,1,sp|AC051642.5|AC051642 Homo sapiens chromosome 8; clone RP11-583M2; complete sequence.,0,152,81574,81701,11.11,AGCUUUGCAUAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCAAGGCACAAUUAUUGCUGGUUAUUGGUAAUUAUCCUACAGAAAUGAAAACUUACGUUCAUACAAACAUGUGUGUGCAGAUAACAAG,AC051642.5/81574-81701,81574-81701,0,127,AC051642.5/81574-81701
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7337,AC055120.5,1,sp|AC055120.5|AC055120 Homo sapiens BAC clone RP11-336N6 from 4; complete sequence.,0,153,152705,152850,39.14,AGCUUUGUACAAUGGCAGUAUCAUAGCCAAUGAGGUUUAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUAUUUCUUGCGAAAAUAGAAUAUAGCUAUAUCACUGACAUGGAUGCACAAGCUACUGUUUUAAAAUAAGUUUAUC,AC055120.5/152705-152850,152705-152850,0,145,AC055120.5/152705-152850
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7349,AC055725.22,1,sp|AC055725.22|AC055725 Homo sapiens 3 BAC RP11-470E12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,154,114390,114250,29.77,AGCUUUGCACAGUGGCGGUAUCGUAGCCAAUGAGGUCUAUCCGAGGAGCGAUUACCGCUCAUCGAAAACACAUUAAAGGAACUAAGAAUUCAUUAAGAAUUAAUAACAUUAACAUUAACUUAAUGUUAACAUUGUUAACAA,AC055725.22/114390-114250,114390-114250,0,140,AC055725.22/114390-114250
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7623,AC068025.12,1,sp|AC068025.12|AC068025 Homo sapiens chromosome 17; clone RP11-802D6; complete sequence.,0,155,142956,143089,22.87,AACUUUGUGCAGUGGCAGUAUUGUAGCCAAUGAGAUUUAUCCGAGGUGUGAUUAUUGCUCAUUGAAAAAUCAUAGGCUGGGCACGGUGGCUCACAUCUGUAAUCUUAGUACUUUGGGAGGCCGAAGCAGGUGGA,AC068025.12/142956-143089,142956-143089,0,133,AC068025.12/142956-143089
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7678,AC068282.8,1,sp|AC068282.8|AC068282 Homo sapiens BAC clone RP11-314L11 from 2; complete sequence.,0,156,151193,151335,38.27,AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUACUCAAGGAGUGAUUAUUGCUAAUUGAAAAACUGAUGAACAUAUGAAGUGCAUGUCUGUAGCUUAAUAGUACAAAGUCAGCCAACUUGAGACCUUGGCUCAGGUA,AC010976.5/22903-23045 AC068282.8/151193-151335,151193-151335,0,142,AC068282.8/151193-151335
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7762,AC068594.15,1,sp|AC068594.15|AC068594 Homo sapiens chromosome 17; clone RP11-285E9; complete sequence.,1,157,21849,21722,28.91,CUCUCUGCACAGUGGCCCCAUCAUAGUCAGUGAGGUUUACCCGAGACGUGAUUAUUGCUCAUUGAAAACUUCCCAAUACCACAAGAUAACUUGCAAUAGAGCUGGCACCGGCCAUUUCCAUUUUUUUU,AC068594.15/21849-21722,21849-21722,0,127,AC068594.15/21849-21722
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7875,AC068954.5,1,sp|AC068954.5|AC068954 Homo sapiens chromosome 8; clone RP11-45A11; complete sequence.,1,158,132227,132090,23.51,AGCUUUGUGCAGUGGUAGCAUUGUAACCAAUUAGGCUUAUCCAAGGCACAAUUAUUGCUAAUUAAAUAUCAUAUUUCUGUUUCCUUAUAUUUAAACAGAGGAAACUGGGCUACAUGAUUUCUUCAUUCCCUCUAAGAA,AC068954.5/132227-132090,132227-132090,0,137,AC068954.5/132227-132090
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7891,AC069023.5,1,sp|AC069023.5|AC069023 Homo sapiens chromosome 10 clone RP11-457D2; complete sequence.,1,159,61200,61025,23.88,AGCUUUGUACAGUGGCAGUAUCUUAGCCGAUGAGGUUUAUCCGAGGCACGAUUAUUGCUAAUUGAAGUUUGCUUUGUCAGUUUUUGAUUCAUGUACUUUGGGGCCCUGUUGUUAGGUACAUAUUCGUCUACACUCAUUACAUCUUCUUGAUGUAUUAAAAAUUUUUUUCCUAUGAA,AC069023.5/61200-61025,61200-61025,0,175,AC069023.5/61200-61025
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8277,AC073476.6,1,sp|AC073476.6|AC073476 Homo sapiens BAC clone RP11-690I21 from 2; complete sequence.,0,160,39411,39580,40.34,AGCUUUGCACAGUGGCAGUAUCGUAGCCAAUGAGCUUUACCCGAGGCGCGAUUAUUGCUAGUUAAAUAUUUAUAAAAACCUUUCGAGCAGCGCCUGAACAAGAAUAGGUUCAGAGGAGACUCCGGUAGUCUGAGUUUGGGCUUGGCCCAGGGUGGGGAAAAGCCCUUGUC,AC011811.42/52400-52231 AC073476.6/39411-39580,39411-39580,0,169,AC073476.6/39411-39580
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8441,AC073989.6,1,sp|AC073989.6|AC073989 Homo sapiens BAC clone RP11-473L20 from 2; complete sequence.,0,161,66929,67063,11.86,AGUUUUGCACAGAGGCAGUAUCGUAGCCAUGGAGGUUUAUCUGGGGUGAGGUUAUUGAUAAUUGAAAAUGAAAACAAUAAAGACAGAAUUAUGUUAGGAGACAGACUGUGGCCCUUCAUUGGGAUGGCAUUGGUG,AC073989.6/66929-67063,66929-67063,0,134,AC073989.6/66929-67063
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8645,AC078878.20,1,sp|AC078878.20|AC078878 Homo sapiens 12 BAC RP11-983C2 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,162,160305,160443,12.55,AUUUAACAUUAGGUAUAUCUCCUAAUGCUAUCCCUCCCUAUCUGAGGUGUAAUUAUUGCAUGAAAAUUUUUCCCAGUACUCGGUCAUGAUGACUUGAAAUAGAAUCAACAUUGGCAAUCUUUGACAGUCUCUAUGGAGA,AC078878.20/160305-160443,160305-160443,0,138,AC078878.20/160305-160443
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,8728,AC079093.16,1,sp|AC079093.16|AC079093 Homo sapiens chromosome 8; clone RP11-265H5; complete sequence.,1,163,111536,111404,53.47,AACUUUGUGCAAUGGCAGCCAAUGAGGUUUACCUGAGGUGUGAUUAUUGCUAAUGGAAAACUCUUCUCAGUACCCUGCCACGAUGAGUUGAAAUAUAGUCAGCAUUGGCAAUUUUUGACCGUCUCUCCAGAGA,AP004293.1/1026-894 AC079093.16/111536-111404 AP004195.1/127620-127488 AC027373.11/96466-96598,111536-111404,0,132,AC079093.16/111536-111404
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9121,AC082651.6,1,sp|AC082651.6|AC082651 Homo sapiens BAC clone RP11-521D12 from 2; complete sequence.,1,164,113253,113116,76.71,AGAUUUCUGCAGUGGCGGUACCAUAGCCAAUGAGGUUUGCCUGAGACAUGAUUAUUGCUAAUUGAAAACUUUUCCCUAUAGCUUGUCAUGACAACUUGAAAUAUAAUUGGCAUCGAGAAUUUUUGAGACUCUCUACAG,AC082651.6/113253-113116,113253-113116,0,137,AC082651.6/113253-113116
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9134,AC083804.13,1,sp|AC083804.13|AC083804 Homo sapiens 3 BAC RP11-269P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,165,19740,19623,53.64,AGCUUUGUGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAAGCGCGAUUAUUGCUAAUUGAAAACUAAAUCUUUGUAGUUUACUUACAUAGGCAUAUUUGUGACUGUGUAUGUA,AC083804.13/19740-19623,19740-19623,0,117,AC083804.13/19740-19623
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9332,AC084837.4,1,sp|AC084837.4|AC084837 Homo sapiens chromosome 8; clone CTD-2005J16; complete sequence.,1,166,69910,69770,77.51,AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUAAAGUUUAUCUGAGAUGUGAUUAUUGCCAGUUGAAAGCUUCUCCCACUACCCUGCCAUGACAACUUGCAGUAUAAUUGACACUGGCAAUCUUUUAUAGUCUCUAUGGAGA,AC091195.6/27579-27719 AC084837.4/69910-69770 AC105150.2/584-444,69910-69770,0,140,AC084837.4/69910-69770
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9483,AC087456.3,1,sp|AC087456.3|AC087456 Homo sapiens chromosome 15; clone RP11-26A13; complete sequence.,1,167,91960,91846,47.36,AGCUUUGUGCAGUGGCAGUAUUGUAGCCAAUGAGGUUUAUCUGAGGCGCAAUUAUUGCUAAUUGAAAAAAAUGGACAUGUAAUCUGAAUAGACAUUUCUUAAAAGAAGGCAUAUA,AC087456.3/91960-91846,91960-91846,0,114,AC087456.3/91960-91846
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9665,AC090096.5,1,sp|AC090096.5|AC090096 Homo sapiens chromosome 8; clone RP11-159C14; complete sequence.,1,168,67818,67678,12.50,AGCUUUGUGCCGUGGCAGUAACCUAGUCAAUGAGGUUUCUCCAAGGCGCAGGUAUUGCUAAUUGAGAAAAAAUAAGAAAUACAGACUCUCGAGCCCCACCCAAACACAUUGAACCAAAACUAGCAUUUUAUCAAAACCCCA,AC090096.5/67818-67678 AC011884.8/145219-145079,67818-67678,0,140,AC090096.5/67818-67678
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9865,AC090621.10,1,sp|AC090621.10|AC090621 Homo sapiens chromosome 18; clone RP11-396N11; complete sequence.,1,169,169830,169690,70.30,AGCUUUGUGCAGUGGCACUAUUGUAGCUACUGAGGUUCCUCCAAGGUGUGAUUAUUGCUAAUUAAAAACAUUUCCCAAUACCACGGUGUGAUGACUUGCAUUAGAAUGGGCAUUGGCAAUUUUUGACAGUCUCUACAGAGA,AC090771.4/104218-104358 AC090621.10/169830-169690,169830-169690,0,140,AC090621.10/169830-169690
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9928,AC090771.4,1,sp|AC090771.4|AC090771 Homo sapiens chromosome 18; clone RP11-795H16; complete sequence.,0,170,104218,104358,70.30,AGCUUUGUGCAGUGGCACUAUUGUAGCUACUGAGGUUCCUCCAAGGUGUGAUUAUUGCUAAUUAAAAACAUUUCCCAAUACCACGGUGUGAUGACUUGCAUUAGAAUGGGCAUUGGCAAUUUUUGACAGUCUCUACAGAGA,AC090771.4/104218-104358 AC090621.10/169830-169690,104218-104358,0,140,AC090771.4/104218-104358
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,106,AC091195.6,1,sp|AC091195.6|AC091195 Homo sapiens chromosome 8; clone RP11-814D21; complete sequence.,0,171,27579,27719,77.51,AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUAAAGUUUAUCUGAGAUGUGAUUAUUGCCAGUUGAAAGCUUCUCCCACUACCCUGCCAUGACAACUUGCAGUAUAAUUGACACUGGCAAUCUUUUAUAGUCUCUAUGGAGA,AC091195.6/27579-27719 AC084837.4/69910-69770 AC105150.2/584-444,27579-27719,0,140,AC091195.6/27579-27719
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,134,AC091485.8,1,sp|AC091485.8|AC091485 Homo sapiens BAC clone RP11-434N4 from 2; complete sequence.,1,172,53471,53332,77.84,AGCUUUGUGCAGUAGCAGUAUCGUAGCCAAUGAGGUUUAUCUGAGUGCAAUUAUUGCUAAUUGGAAACUUUUCCCAAUACCCCACUGCAAUUACUUGCGAUAUAGUCAGCACUGGCAAUUUUUGACAGUCUCUAUGGAGA,AC091485.8/53471-53332,53471-53332,0,139,AC091485.8/53471-53332
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,636,AC092451.12,1,sp|AC092451.12|AC092451 Homo sapiens 12p BAC RP11-318G8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,173,2781,2641,96.57,AGCUUUGCACAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCACAAUUAUUGCUAAUUGAAAACAUUUCCCAAUAUCCUGCCAUGAAGACUUGUAAUAUAGUUGGCAUUAGCAAUUUUUGACAGUCUCUACGGAGA,AC092451.12/2781-2641,2781-2641,0,140,AC092451.12/2781-2641
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,839,AC092756.2,1,sp|AC092756.2|AC092756 Homo sapiens chromosome 15 clone RP11-429D19 map 15q21.3; complete sequence.,1,174,112704,112564,93.66,AGCUUUGCGCAAUGGCAAUAUUUUAGCCAGGGCUGUUCAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUUCACAAUACCCUGCCAUGAUGACUGGAAAUACAGUCAGCAUUGACAAUUUUUGACAGUCUCUAUGGAGA,AC092756.2/112704-112564,112704-112564,0,140,AC092756.2/112704-112564
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1180,AC093286.3,1,sp|AC093286.3|AC093286 Homo sapiens chromosome 5 clone RP11-456A14; complete sequence.,0,175,65939,66069,58.06,AGCUUUGCUCAGUGGCAGUAUUAUGACCAACGAGCUCCAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUUCCCAGUACGACUAUUGAAAUAUAGUUUAGAUUGGCAUUUUUUGGACAGUCUGUAUGGA,AC093296.2/156754-156624 AC093286.3/65939-66069,65939-66069,0,130,AC093286.3/65939-66069
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1186,AC093296.2,1,sp|AC093296.2|AC093296 Homo sapiens chromosome 5 clone RP11-536I7; complete sequence.,1,176,156754,156624,58.06,AGCUUUGCUCAGUGGCAGUAUUAUGACCAACGAGCUCCAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUUCCCAGUACGACUAUUGAAAUAUAGUUUAGAUUGGCAUUUUUUGGACAGUCUGUAUGGA,AC093296.2/156754-156624 AC093286.3/65939-66069,156754-156624,0,130,AC093296.2/156754-156624
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,1190,AC093301.3,1,sp|AC093301.3|AC093301 Homo sapiens chromosome 5 clone RP11-565F4; complete sequence.,1,177,118358,118218,42.47,AACUUCACAAAGAGGCAGUAUUACACCCACUGAGGUUUAUCCAAGGUAUGAUUCUUGCUAACUGAAAACUUUUCUCAAUGUCUCACCAUGAUGACUUGAAGUCUGAUAUUCGACUUUGGCAAUUUUUAACAAUCACUGUGG,AC093301.3/118358-118218,118358-118218,0,140,AC093301.3/118358-118218
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2042,AC097635.4,1,sp|AC097635.4|AC097635 Homo sapiens chromosome 3 clone RP11-263O21; complete sequence.,0,178,138334,138470,57.55,AGCUUUGUGCAGAGGCAGUAUCAUAGCCAGUGAGGUUUAGCCACGUUGUGAUUAUUGCUAAUUGAAAACUUUUCCCCAUAGCUCACCGUGACGACUUGUAAUACAGCAAGCAUUAAAAAUAAAAUAAAUAUGACACA,AC097635.4/138334-138470,138334-138470,0,136,AC097635.4/138334-138470
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2301,AC099521.2,1,sp|AC099521.2|AC099521 Homo sapiens chromosome 16 clone RP11-71L14; complete sequence.,1,179,9689,9553,29.11,AGCUUUGAGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCAAGGCGUAAUUAUUGGUAGUUGAAACUCAAGAGUUGAGCCCCAUAAGAAUUCCAAUUUGCUUAAAGCAAAUGUAGGUUUUGUUUGCGUCUCCAUU,AC099521.2/9689-9553 AC020978.10/11527-11663 AC024903.17/9688-9552,9689-9553,0,136,AC099521.2/9689-9553
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2390,AC099784.2,1,sp|AC099784.2|AC099784 Homo sapiens chromosome 1 clone RP11-159C21; complete sequence.,1,180,21296,21174,32.28,AGCUCUGCAGUGGCAGUAUCAUAGCCCCUUAUCUAAGGCACGGUCAUUGCUAAUUGAGAACUAUUCCCAAUACCUCACCAUGAUGACUUGAAAUAUGGUCUGCAAUAGCAAUUUCUUUCUUUC,AC099784.2/21296-21174,21296-21174,0,122,AC099784.2/21296-21174
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2557,AC103705.5,1,sp|AC103705.5|AC103705 Homo sapiens chromosome 8; clone RP11-55J15; complete sequence.,1,181,152648,152512,39.24,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUCACCGAGGUGCGAUUAUUGCUAAUAGAAAGCCACAGAUGGUCCUGGAGACCAGAGCCAUCAAAACCCUUGUUCUUGUGCGGAAAAGAAGGCAAACCAGG,AC103705.5/152648-152512,152648-152512,0,136,AC103705.5/152648-152512
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2715,AC104070.3,1,sp|AC104070.3|AC104070 Homo sapiens BAC clone RP11-279K24 from 4; complete sequence.,1,182,14709,14584,32.98,AGCUCUCUGCAGUGGCUGUAUCAUAGCCAAUGAGGUUUAUCCAAGGCAUGAUUAUUGCUAAUUGAAAAUGAGCAGCGCAAGGCAGUGGACCUUGUGAGGAGUUGAGAUAUUUUCACACACCUGGUG,AC104070.3/14709-14584,14709-14584,0,125,AC104070.3/14709-14584
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2782,AC104185.2,1,sp|AC104185.2|AC104185 Homo sapiens chromosome 3 clone RP11-268J19; complete sequence.,1,183,30852,30711,82.23,AGCUUCACACAGUGGCAAUUGUUGUAGCCAAUGAGGUUUAUCUGAAGCACAAUUAUUGCUGAUUGAAAACUUUUCCCAGUACCCUGCUGUGAUGACUUUAAAUAUAGUUGGCAUUGGCAGUUUUUGAUAGUCUCCAAAGAGA,AC104185.2/30852-30711,30852-30711,0,141,AC104185.2/30852-30711
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,2831,AC104332.2,1,sp|AC104332.2|AC104332 Homo sapiens chromosome 1 clone RP11-330C7; complete sequence.,1,184,95482,95356,43.73,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAGUGAGGUUUAUCCGAGGCGCAAUUAUUGCUAAUUGAAAUUAUGAUUUUCCUACUUUAUUUAGUAUUGGUAGAUCCUUCAUUAUUGAACUCAGACAUCC,AC004662.1/19192-19066 AL133332.12/21171-21045 AC104332.2/95482-95356,95482-95356,0,126,AC104332.2/95482-95356
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3178,AC105150.2,1,sp|AC105150.2|AC105150 Homo sapiens chromosome 8; clone RP11-328K2; complete sequence.,1,185,584,444,77.51,AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUAAAGUUUAUCUGAGAUGUGAUUAUUGCCAGUUGAAAGCUUCUCCCACUACCCUGCCAUGACAACUUGCAGUAUAAUUGACACUGGCAAUCUUUUAUAGUCUCUAUGGAGA,AC091195.6/27579-27719 AC084837.4/69910-69770 AC105150.2/584-444,584-444,0,140,AC105150.2/584-444
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3843,AC108130.3,1,sp|AC108130.3|AC108130 Homo sapiens chromosome 5 clone RP11-84B12; complete sequence.,0,186,17066,17202,39.53,AACUUUGCACAGGGCAGUGUCACAACCAAUGAAGUUUAUCCAAAGUGCAAUUAUUGCUAAUUAAAAAAUUUUCCAAUGCCCCACCAUGACAGCUUAAAAUAUACUCAGCAUUGACAAAUUUUUCUCAUUUGGAGAAA,AC108130.3/17066-17202,17066-17202,0,136,AC108130.3/17066-17202
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,3963,AC108667.9,1,sp|AC108667.9|AC108667 Homo sapiens 3 BAC RP11-816B4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,187,86959,86824,46.34,AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGAGCGAUUACUGCUAAUUGAAAAAGAAAAUGCCUGCAGUUUAGAAGAUGGCUGAUAAAGAAACAGAUUCUGGAAUUAAAAAUUAAAACCUA,AC108667.9/86959-86824,86959-86824,0,135,AC108667.9/86959-86824
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4201,AC109826.4,1,sp|AC109826.4|AC109826 Homo sapiens BAC clone RP11-764D5 from 2; complete sequence.,0,188,75347,75485,111.02,AGCUUUAUGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCUGAGGUGUGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACUCCACCAUGAUGACUUGAAAUAUAGUCAGCAUUGGCAAUUUUUGACAGUCUGUACAGA,AC109826.4/75347-75485,75347-75485,0,138,AC109826.4/75347-75485
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4274,AC110373.4,1,sp|AC110373.4|AC110373 Homo sapiens BAC clone RP11-548H18 from 4; complete sequence.,0,189,9980,10125,43.60,AGCUUUGUACAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUAUUUCUUGCGAAAAUAGAAUAUAGCUAUAUCACUGACAUGGAUGCACAAGCUACUGUUUUAAAAUAAGUUUAUC,AC110373.4/9980-10125,9980-10125,0,145,AC110373.4/9980-10125
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4666,AC113370.2,1,sp|AC113370.2|AC113370 Homo sapiens chromosome 5 clone RP11-124O5; complete sequence.,1,190,78211,78076,51.19,AGCUUUGCACAUUGGCAGUAUUAUAGCUAGAGGUUUAUUCAAGAAGUGAUUAUUGUUAAUUGAAAACUUUCCUGUUACCUCACCACGAUGACUUGUAAUAUAAUCAACAUUGGUAAUUUUUGAUAUUAUCCAAAAA,AC113370.2/78211-78076,78211-78076,0,135,AC113370.2/78211-78076
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,4707,AC113425.2,1,sp|AC113425.2|AC113425 Homo sapiens chromosome 5 clone RP11-626B22; complete sequence.,0,191,64018,64168,41.73,AGCUUUGUGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAAAUUGAGGAAUAGUUUAGUAAAACACACAGAUCUUAAAUAUAUAAUUCAAUGGCUUUUUACAAAUAUCUAUCUGUAGCCAACAC,AC113425.2/64018-64168,64018-64168,0,150,AC113425.2/64018-64168
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5431,AC119675.2,1,sp|AC119675.2|AC119675 Homo sapiens chromosome 1 clone RP4-731G4; complete sequence.,1,192,36787,36650,34.46,AACUUAUGUAAGUAGCAGUAUUAUCAACAAUGAGGUUUAUCUGCGGCACAAUUCUCGCUCACUGAAAAAUCCCAACACCCAGCCAUGAAAACUUGCAAUAUAGUCGGCAUUGGCAACUUUUGACAGUCUCUAUGGAGA,AC119675.2/36787-36650,36787-36650,0,137,AC119675.2/36787-36650
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5456,AC119793.3,1,sp|AC119793.3|AC119793 Homo sapiens 12 BAC RP11-390F17 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,193,15706,15559,45.01,ACCCUGCACAGUAGUAGUAUCAUAGUCAAUGAGGUUUAUCCGAGGCACAAUUAUUGCUAAUUGAAGUCUUUUCACAAUAUCCUGCCAUGAUGACUUGAAAUAUAGUCAUAUAUUUCAAGUAUUGGUAAUUAUUGACAGUCUUUAAGGA,AC119793.3/15706-15559,15706-15559,0,147,AC119793.3/15706-15559
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5500,AC121161.2,1,sp|AC121161.2|AC121161 Homo sapiens BAC clone RP11-781M16 from 4; complete sequence.,0,194,2422,2562,80.97,AGCUUUGUACCGUGGCAGUCUCAUAACCAAUGAGGUUUAUUCGAGGCGUGAUUACUGCUAAUUAAAAACUUUUUCCAAUACCCCAUCAUCAUGACUUGAAAUAUAGCUGGCAUAGGCAAUUUUUGACAGUCUCUAUGGAGA,AC125289.1/2422-2562 AC121161.2/2422-2562,2422-2562,0,140,AC121161.2/2422-2562
./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin ,Rfam/cm/RF00015.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5596,AC123595.1,1,sp|AC123595.1|AC123595 Homo sapiens chromosome 5 clone RP11-213H15; c