Params: ./cmzasha --no-stderr --filter 180 11 Rfam/cm/RF00015.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00015_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00015_fwdinf_hmmtype1_advance_copy.bin Build: release Host: xmen.cs.washington.edu pid: 1572 ----cmFile: Rfam/cm/RF00015.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #20920,sp|AF270843.1|AF270843 Saccharomyces pastorianus unknown sequence. ----isReversed: 0 ----hitSequence: AUCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUUGAAAUUUAAUUAUAAACCAGACCGUCUCCUCAUGGUCUACUAUGGGUGUUCGCUUUUGAACACUUCAAGACUAUGUAGGGAAUUUUUGGAAUAUUUUCUCAU hit 0 : 940 1105 (fwd) 59.19 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUC UU GC A GGG AAUA:+:: ::CAGUGAGG UU +CCGAG::::+:UU UUGC 940 AUCCUUAUGC-ACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGC 998 ,,<<<<_________......__>>>>,,,,,<<<<<<<<<<<<<<____.......... 61 UAgUugAAAACUAUU......CCcaAccgCCCgccuaagacgacauguua.......... 104 U+GU::AAA UA U CC::ACCG C :CC ::: G:C::+U+ 999 UGGUUGAAAUUUAAUuauaaaCCAGACCGUC-UCC-UCAUGGUCUACUAUggguguucgc 1056 ...........__>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 ...........uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 U ::G:C :::+GG:AAUUUUUGGAA ::: +C ::: 1057 uuuugaacacuUCAAGACUAUGUAGGGAAUUUUUGGAAUAUUUUC-UCAU 1105 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #59691,sp|D63682.1|D63682 Erythrobasidium hasegawianum U4 small nuclear RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUCUUUGUGCUCGGGCACGCGAUGGCGACGUUGAAGGAAACUGAGUCCCAUCUAAUUGCUGGUUGCAAACUAAAUUCCACACUCUUCACUGCACUCUUCGGAGUCUUUGGGAAUUUCUGCCCGCCUAACGGC hit 1 : 100 231 (fwd) 25.66 bits :::::::::::::::::<<-..<<<<<-<<<_________________>>>>>>>>--.> 1 AuCUUUGCGCUAGGGGCaaU..aucguAgccAGUGAGGcUuuAaCCGAggcgcgauUA.u 57 AUCUUUG GC + GGGCA: :::G G:C UGA G AAC+GAG:C C:::UA : 100 AUCUUUGUGC-UCGGGCAC-gcGAUGGCGACGUUGAAGGA--AACUGAGUCCCAUCUAaU 155 >,,,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>> 58 uGCUAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcu 115 UGCU+GU : AAACUA CC: AC + ::C A+: +AC: U + :GU+ : 156 UGCUGGUUGCAAACUAAAuuCCACACUC---UUC--ACUGCACUCUUCG--GAGUCUU-- 206 >>>>>,,,,,,,,,,,,<<<<___>>>> 116 uuggcAAUUUUUGGAAGcccuccaaggg 143 UG::AAUUU+UG :CC + GG: 207 -UGGGAAUUUCUGCCC-GCCUAA-CGGC 231 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #68856,sp|U18778.1|SC9537 Saccharomyces cerevisiae chromosome V cosmids 9537, 9581, 9495, 9867, and lambda clone 5898. ----isReversed: 1 ----hitSequence: AUCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUUGAAAUUUAAUUAUAAACCAGACCGUCUCCUCAUGGUCAAUUCGGUGUUCGCUUUUGAAUACUUCAAGACUAUGUAGGGAAUUUUUGGAAUACCUUU hit 2 : 15676 15517 (rev) 63.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUC UU GC A GGG AAUA:+:: ::CAGUGAGG UU +CCGAG::::+:UU UUGC 50355 AUCCUUAUGC-ACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGC 50413 ,,<<<<_________......__>>>>,,,,,<<<<<<<<<<<<<<____.......... 61 UAgUugAAAACUAUU......CCcaAccgCCCgccuaagacgacauguua.......... 104 U+GU::AAA UA U CC::ACCG C :CC+::::+:::AU + 50414 UGGUUGAAAUUUAAUuauaaaCCAGACCGUC-UCCUCAUGGUCAAUUCGGuguucgcuuu 50472 .....__>>>>>>>>...>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 .....uauugucggc...uuuggcAAUUUUUGGAAGcccuccaaggg 143 UU:::+:: ::+GG:AAUUUUUGGAA +CCU+ 50473 ugaauACUUCAAGACuauGUAGGGAAUUUUUGGAAUACCUUU----- 50514 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #71108,sp|L22204.1|SCPSL1 Saccharomyces cerevisiae profilin synthetic lethal (PSL1) gene, complete cds. ----isReversed: 0 ----hitSequence: AUCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUUGAAAUUUAAUUAUAAACCAGACCGUCUCCUCAUGGUCAAUUCGGUGUUCGCUUUUGAAUACUUCAAGACUAUGUAGGGAAUUUUUGGAAUACCUUU hit 3 : 4781 4940 (fwd) 63.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUC UU GC A GGG AAUA:+:: ::CAGUGAGG UU +CCGAG::::+:UU UUGC 4781 AUCCUUAUGC-ACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGC 4839 ,,<<<<_________......__>>>>,,,,,<<<<<<<<<<<<<<____.......... 61 UAgUugAAAACUAUU......CCcaAccgCCCgccuaagacgacauguua.......... 104 U+GU::AAA UA U CC::ACCG C :CC+::::+:::AU + 4840 UGGUUGAAAUUUAAUuauaaaCCAGACCGUC-UCCUCAUGGUCAAUUCGGuguucgcuuu 4898 .....__>>>>>>>>...>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 .....uauugucggc...uuuggcAAUUUUUGGAAGcccuccaaggg 143 UU:::+:: ::+GG:AAUUUUUGGAA +CCU+ 4899 ugaauACUUCAAGACuauGUAGGGAAUUUUUGGAAUACCUUU----- 4940 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #71633,sp|M17238.1|SCSNR14A S.cerevisiae (U4-like) small nuclear RNA snR14 gene. ----isReversed: 0 ----hitSequence: AUCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUUGAAAUUUAAUUAUAAACCAGACCGUCUCCUCAUGGUCAAUUCGGUGUUCGCUUUUGAAUACUUCAAGACUAUGUAGGGAAUUUUUGGAAUACCUUU hit 4 : 314 473 (fwd) 63.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUC UU GC A GGG AAUA:+:: ::CAGUGAGG UU +CCGAG::::+:UU UUGC 314 AUCCUUAUGC-ACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGC 372 ,,<<<<_________......__>>>>,,,,,<<<<<<<<<<<<<<____.......... 61 UAgUugAAAACUAUU......CCcaAccgCCCgccuaagacgacauguua.......... 104 U+GU::AAA UA U CC::ACCG C :CC+::::+:::AU + 373 UGGUUGAAAUUUAAUuauaaaCCAGACCGUC-UCCUCAUGGUCAAUUCGGuguucgcuuu 431 .....__>>>>>>>>...>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 .....uauugucggc...uuuggcAAUUUUUGGAAGcccuccaaggg 143 UU:::+:: ::+GG:AAUUUUUGGAA +CCU+ 432 ugaauACUUCAAGACuauGUAGGGAAUUUUUGGAAUACCUUU----- 473 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #76725,sp|AL034382.1|SPBC428 S.pombe chromosome II cosmid c428. ----isReversed: 1 ----hitSequence: AUCUUUGUGCACGGGUAUUACGCUUAUCAGUGAGGAACUUUUCCUAGAUGGCGUUAUUGCUAGUUGAAAACUAUUACCCUGACCGCUCCAACUCUCGUUAAGAGUUUUGGGAAUAUUUGGAAACCAACU hit 5 : 26841 26713 (rev) 87.27 bits :::::::::::::::::<<-<<<<<-<<<_______..__________>>>>>>>>-->> 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGG..cUuuAaCCGAggcgcgauUAuu 58 AUCUUUG GC A GGG A+UA:::U ::CAGUGAGG CUUU +CC AG::G:::UUA+U 14415 AUCUUUGUGC-ACGGGUAUUACGCUUAUCAGUGAGGaaCUUU-UCCUAGAUGGCGUUAUU 14472 ,,,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>> 59 GCUAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcuu 116 GCUAGU::AAAACUAUU CC::ACCG ::C:AA+:C::++ U+A ::G: UU 14473 GCUAGUUGAAAACUAUUacCCUGACCG---CUCCAACUCUCGU--UAA-----GAGU-UU 14521 >>>>,,,,,,,,,,,,<<<<___>>>> 117 uggcAAUUUUUGGAAGcccuccaaggg 143 :G::AAU UUUGGAA CC++C 14522 UGGGAAUAUUUGGAAACCAACU----- 14543 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #77621,sp|X15491.1|SPSNU4 Yeast snu4 gene for small nuclear RNA U4 ----isReversed: 0 ----hitSequence: AUCUUUGUGCACGGGUAUUACGCUUAUCAGUGAGGAACUUUUCCUAGAUGGCGUUAUUGCUAGUUGAAAACUAUUACCCUGACCGCUCCAACUCUCGUUAAGAGUUUUGGGAAUAUUUGGAAACCAACU hit 6 : 209 337 (fwd) 87.27 bits :::::::::::::::::<<-<<<<<-<<<_______..__________>>>>>>>>-->> 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGG..cUuuAaCCGAggcgcgauUAuu 58 AUCUUUG GC A GGG A+UA:::U ::CAGUGAGG CUUU +CC AG::G:::UUA+U 209 AUCUUUGUGC-ACGGGUAUUACGCUUAUCAGUGAGGaaCUUU-UCCUAGAUGGCGUUAUU 266 ,,,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>> 59 GCUAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcuu 116 GCUAGU::AAAACUAUU CC::ACCG ::C:AA+:C::++ U+A ::G: UU 267 GCUAGUUGAAAACUAUUacCCUGACCG---CUCCAACUCUCGU--UAA-----GAGU-UU 315 >>>>,,,,,,,,,,,,<<<<___>>>> 117 uggcAAUUUUUGGAAGcccuccaaggg 143 :G::AAU UUUGGAA CC++C 316 UGGGAAUAUUUGGAAACCAACU----- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5158,sp|AC005719.2|AC005719 Drosophila melanogaster, chromosome 2L, region 38A5-38B4, BAC clone BACR48M05, complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGCGCAGAGGCGAUAUCGUAACCAAUGAAGUUCUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG hit 7 : 131802 131664 (rev) 126.48 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGC AG GGC:AUAUCGUA:CCA+UGA G+U+U AC+GAGG:GCGAUUAU:GC 56540 AUCUUUGCGC-AGAGGCGAUAUCGUAACCAAUGAAGUUCU-ACUGAGGUGCGAUUAUUGC 56597 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+U CCAA:++CCCGCC :+G:+GAC:+G++AUA+:GUC+:C+: GGC 56598 UAGUUGAAAACUUUAACCAAUACCCCGCC-AUGGGGACGUGAAAUACCGUCCACUACGGC 56656 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUGGAAGCCC: +:GGG 56657 AAUUUUUGGAAGCCCGA-GAGGG 56678 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5171,sp|AC005811.10|AC005811 Drosophila melanogaster, chromosome 2L, region 39B1-39B3, P1 clone DS05527, complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUCCUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG hit 8 : 5801 5663 (rev) 123.94 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGC AG GGCAAUA:CGUA:CCA+UGA G+ +U C+GAGG:GCG:UUAUUGC 67187 AUCUUUGCGC-AGUGGCAAUACCGUAACCAAUGAAGUCCU-CCUGAGGUGCGGUUAUUGC 67244 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+U CCAA:++CCCGCC :+G:+GAC:+G++AUA+:GUC+:C+: GGC 67245 UAGUUGAAAACUUUAACCAAUACCCCGCC-AUGGGGACGUGAAAUACCGUCCACUACGGC 67303 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUGGAAGCCC: +:GGG 67304 AAUUUUUGGAAGCCCGA-GAGGG 67325 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5800,sp|AC009910.5|AC009910 Drosophila melanogaster, chromosome 2L, region 25D-25E, BAC clone BACR35L07, complete sequence. ----isReversed: 0 ----hitSequence: AACCUUGUGCAGUGGCAACAUCGCAAGCAAUGAAGUUCCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUAAAACCAAUAUCUCGCCCAGCGUAAGGAUCUACGAUCUUUAAGCUAAGGCAAUUUUUUUAGGCCCCAAGUGGG hit 9 : 87034 87177 (fwd) 71.39 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A C UUG GC AG GGCAA AUCG:A: CA+UGA G+U+ AAC+GAG ::CGAUUAUUGC 87034 AACCUUGUGC-AGUGGCAACAUCGCAAGCAAUGAAGUUCCAACUGAGCUGCGAUUAUUGC 87092 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<..______.>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacau..guuaua.uugucggcuuu 117 UA:UUGAAAACUA CCAA:+ C CGCC :AG :A::: +U+ A :::U: CU:+ 87093 UAGUUGAAAACUAAAACCAAUAUCUCGCC-CAGCGUAAGGauCUACGAuCUUUAAGCUAA 87151 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 GGCAAUUUUU A GCCC ++ GGG 87152 GGCAAUUUUUUUAGGCCCCAAGUGGG 87177 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6417,sp|AC084532.1|AC084532 Caenorhabditis briggsae cosmid G22L08, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGACAUACGCAAUUUUUGAACGCCUCUAGGAGG hit 10 : 13028 13166 (fwd) 123.93 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 13028 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 13085 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:+C:U++GC 13086 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGACAUACGC 13143 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::+++::GG 13144 AAUUUUUGAACGCCUCUAGGAGG 13166 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6476,sp|AC084591.1|AC084591 Caenorhabditis briggsae cosmid G42B20, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGACAUACGCAAUUUUUGAACGCCUCUAGGAGG hit 11 : 18183 18321 (fwd) 123.93 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 18183 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 18240 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:+C:U++GC 18241 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGACAUACGC 18298 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::+++::GG 18299 AAUUUUUGAACGCCUCUAGGAGG 18321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6476,sp|AC084591.1|AC084591 Caenorhabditis briggsae cosmid G42B20, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGACAUACGCAAUUUUUGAACGCCUCUAGGAGG hit 12 : 29419 29281 (rev) 123.93 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 13786 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 13843 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:+C:U++GC 13844 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGACAUACGC 13901 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::+++::GG 13902 AAUUUUUGAACGCCUCUAGGAGG 13924 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6706,sp|AC093099.1|AC093099 Drosophila melanogaster, chromosome 2L, region 39A-39D, BAC clone BACR34H23, complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUCCUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG hit 13 : 54500 54362 (rev) 123.94 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGC AG GGCAAUA:CGUA:CCA+UGA G+ +U C+GAGG:GCG:UUAUUGC 108976 AUCUUUGCGC-AGUGGCAAUACCGUAACCAAUGAAGUCCU-CCUGAGGUGCGGUUAUUGC 109033 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+U CCAA:++CCCGCC :+G:+GAC:+G++AUA+:GUC+:C+: GGC 109034 UAGUUGAAAACUUUAACCAAUACCCCGCC-AUGGGGACGUGAAAUACCGUCCACUACGGC 109092 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUGGAAGCCC: +:GGG 109093 AAUUUUUGGAAGCCCGA-GAGGG 109114 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6946,sp|AC116967.2|AC116967 Dictyostelium discoideum chromosome 2 map 5481549-5500786 strain AX4, complete sequence. ----isReversed: 1 ----hitSequence: GUCUUUACGCUGGGACCAAAGCAGUAGGGCGUGACCGAUAAGGGAUCCACUGUUAGUGCUUUUUGCAAACUAUUCCACAACGCAGUCCGAAACAAUUCGGCCUGCAAUUUUUAAUUCUAUCCUAA hit 14 : 4907 4783 (rev) 15.64 bits :::::::::::::::::.<<-<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGCGCUAGGGGC.aaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 UCUUU CGC +GGG C A ::G+AG : GUGA U+ A GA: C+C:: UA UG 14331 GUCUUUACGC-UGGGACcAAAGCAGUAGGGCGUGACCGAUA-AGGGAUCCACUGUUAGUG 14388 ,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 60 CUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 CU :U : AAACUAUUCC: A: + GC: ++ CGA:A +A :UCGG :G 14389 CUUUUUGCAAACUAUUCCACAA-C---GCA-GUC-CGAAA--CAA----UUCGGC--CUG 14434 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 CAAUUUUU AA : ::+C :: : 14435 CAAUUUUU--AAUUCUAUC-CUAA 14455 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7626,sp|AE003610.3|AE003610 Drosophila melanogaster chromosome 2L section 19 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: AACCUUGUGCAGUGGCAACAUCGCAAGCAAUGAAGUUCCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUAAAACCAAUAUCUCGCCCAGCGUAAGGAUCUACGAUCUUUAAGCUAAGGCAAUUUUUUUAGGCCCCAAGUGGG hit 15 : 130141 130284 (fwd) 71.39 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A C UUG GC AG GGCAA AUCG:A: CA+UGA G+U+ AAC+GAG ::CGAUUAUUGC 130141 AACCUUGUGC-AGUGGCAACAUCGCAAGCAAUGAAGUUCCAACUGAGCUGCGAUUAUUGC 130199 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<..______.>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacau..guuaua.uugucggcuuu 117 UA:UUGAAAACUA CCAA:+ C CGCC :AG :A::: +U+ A :::U: CU:+ 130200 UAGUUGAAAACUAAAACCAAUAUCUCGCC-CAGCGUAAGGauCUACGAuCUUUAAGCUAA 130258 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 GGCAAUUUUU A GCCC ++ GGG 130259 GGCAAUUUUUUUAGGCCCCAAGUGGG 130284 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7680,sp|AE003664.2|AE003664 Drosophila melanogaster chromosome 2L section 73 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: AUCUUUGCGCAGAGGCGAUAUCGUAACCAAUGAAGUUCUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG hit 16 : 78699 78837 (fwd) 126.48 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGC AG GGC:AUAUCGUA:CCA+UGA G+U+U AC+GAGG:GCGAUUAU:GC 78699 AUCUUUGCGC-AGAGGCGAUAUCGUAACCAAUGAAGUUCU-ACUGAGGUGCGAUUAUUGC 78756 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+U CCAA:++CCCGCC :+G:+GAC:+G++AUA+:GUC+:C+: GGC 78757 UAGUUGAAAACUUUAACCAAUACCCCGCC-AUGGGGACGUGAAAUACCGUCCACUACGGC 78815 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUGGAAGCCC: +:GGG 78816 AAUUUUUGGAAGCCCGA-GAGGG 78837 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7685,sp|AE003669.4|AE003669 Drosophila melanogaster chromosome 2L section 78 of 83 of the complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUCCUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG hit 17 : 204840 204702 (rev) 123.94 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGC AG GGCAAUA:CGUA:CCA+UGA G+ +U C+GAGG:GCG:UUAUUGC 69156 AUCUUUGCGC-AGUGGCAAUACCGUAACCAAUGAAGUCCU-CCUGAGGUGCGGUUAUUGC 69213 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+U CCAA:++CCCGCC :+G:+GAC:+G++AUA+:GUC+:C+: GGC 69214 UAGUUGAAAACUUUAACCAAUACCCCGCC-AUGGGGACGUGAAAUACCGUCCACUACGGC 69272 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUGGAAGCCC: +:GGG 69273 AAUUUUUGGAAGCCCGA-GAGGG 69294 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #9821,sp|AF022972.1|AF022972 Caenorhabditis elegans cosmid F10D2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGACCUCUGAAACAUGGGUGCCAUACGCAAUUUUUGAACGCCUCUAGGAGG hit 18 : 10804 10666 (rev) 119.05 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 22137 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 22194 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:::UG++A AU:::+:+C:U++GC 22195 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-ACCUCUGAAACAUGGGUGCCAUACGC 22252 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::+++::GG 22253 AAUUUUUGAACGCCUCUAGGAGG 22275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #25406,sp|AF204671.1|AF204671 Leptomonas collosoma tRNA-Gly gene, partial sequence; and tRNA-Pro gene, complete sequence; and small nuclear RNA U4 gene, complete sequence. ----isReversed: 0 ----hitSequence: AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGUGAUUGUUCAUUUAGUGCUAUACUAAAAACUCCAGUACUCCUAUACGGGAAUAUUUGCAUCCACCAAGGGUG hit 19 : 434 542 (fwd) 15.76 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-.->>, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauU.AuuG 59 A+C UUGCGC AGGG A U U::: :::A GA CU+ A +GA::::::A U A+UG 434 AGCCUUGCGC-AGGGAGA-UGUGAACGCAA--GAACCUC--AGUGAUUGUUCAUUuAGUG 487 ,,,<<<<_________....__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>> 60 CUAgUugAAAACUAUU....CCcaAccgCCCgccuaagacgacauguuauauugucggcu 115 CUA: ACUA CC ++: ::C: + +UA 488 CUAU------ACUAAAaacuCCAGUA-----CUCC--------U--AUA----------- 515 >>>>>,,,,,,,,,,,,<<<<___>>>> 116 uuggcAAUUUUUGGAAGcccuccaaggg 143 :G::AAU UUUG A C:C: ++:G:G 516 -CGGGAAUAUUUGCAUCCACCAAGGGUG 542 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #37194,sp|AF326336.1|AF326336 Crithidia fasciculata U4 snRNA, complete sequence. ----isReversed: 0 ----hitSequence: AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCCGGUGAUUGUUCACUUAGUGCUCAACUAAAACUCCAGUACUCCUAUUACAGGGAACAUUUGAUCCUGCCACGGGCA hit 20 : 2 112 (fwd) 11.34 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-.->>, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauU.AuuG 59 A+C UUGCGC AGGG A U:U::: :::A GA CU+ +GA::::::A:U A+UG 2 AGCCUUGCGC-AGGGAGA-UGUGAACGCAA--GAACCUCC-GGUGAUUGUUCACUuAGUG 56 ,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 60 CUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 CU : ::AAAACU C:: :++ :CC+ + UUA C +GG 57 CUCAACUAAAACU----CCAGUAC---UCCU----A------UUA------C-----AGG 88 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 :AA UUUG+ ::C: C+:G:: 89 GAACAUUUGAUCCUGCCACGGGCA 112 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #13573,sp|L22250.1|ALSNUC Ascaris lumbricoides small nuclear RNA (snRNA) U4-1 gene. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGAGGCGAUAACGUGACCAAUGAGGCUCAGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUCACCCAAUUGCCCGCCGCGGCGCCUGAAACAUGGCGGCCGUACGAAUUUUUGAACGCCCUGAAGGG hit 21 : 171 308 (fwd) 108.75 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGC:AUA:CGU :CCA+UGAGGCU++ CCGAGG:GCG:UUAU:GC 171 AGCUUUGCGC-AGAGGCGAUAACGUGACCAAUGAGGCUCA-GCCGAGGUGCGUUUAUUGC 228 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+:UUGAAAACU+U CCCAA: GCCCGC ::G +::C:UG++A AU:G::++C::+ G 229 UGGUUGAAAACUUUCaCCCAAUUGCCCGCC-GCG-GCGCCUGAAACAUGGCGGCCGUACG 286 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCCCU + AGGG 287 -AAUUUUUGAACGCCCUGA-AGGG 308 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #15526,sp|AY007789.1|AY007789 Leishmania tarentolae spliced leader RNA gene, partial sequence; U4 snRNA, snoRNA, tRNA-Pro, tRNA-Thr, snoRNA, and tRNA-Gly genes, complete sequence. ----isReversed: 1 ----hitSequence: AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGGUGAUUGUUCACUUAGUGCUGAACUAAAGACUCCAUCACUCCUAUUGCAGGGAAUAUUUGAACCACCAAGGGUG hit 22 : 386 276 (rev) 20.84 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-.->>, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauU.AuuG 59 A+C UUGCGC AGGG A U:U::: :::A GA CU++ +GA::::::A:U A+UG 1288 AGCCUUGCGC-AGGGAGA-UGUGAACGCAA--GAACCUCA-GGUGAUUGUUCACUuAGUG 1342 ,,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>> 60 CUAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuu 116 CU+: ACUA CCA+:++ :CC+ + UU+ C 1343 CUGA------ACUAAAgacUCCAUCAC---UCCU----A------UUG------C----- 1372 >>>>,,,,,,,,,,,,<<<<___>>>> 117 uggcAAUUUUUGGAAGcccuccaaggg 143 +GG:AAU UUUG+A C:C: ++:G:G 1373 AGGGAAUAUUUGAAC-CACCAAGGGUG 1398 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #43515,sp|Z78012.1|CEC52E4 Caenorhabditis elegans cosmid C52E4 ----isReversed: 0 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG hit 23 : 16121 16259 (fwd) 124.25 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 16121 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 16178 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:GC:U++GC 16179 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGGCAUACGC 16236 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::+++::GG 16237 AAUUUUUGAACGCCUCUAGGAGG 16259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #44428,sp|Z74039.1|CEK03B8 Caenorhabditis elegans cosmid K03B8 ----isReversed: 1 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCCAGGAGG hit 24 : 1549 1411 (rev) 124.74 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 27584 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 27641 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:GC:U++GC 27642 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGGCAUACGC 27699 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::C++::GG 27700 AAUUUUUGAACGCCUCCAGGAGG 27722 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45029,sp|X51382.1|CESNU41 Caenorhabditis elegans DNA encoding U4-1 snRNA ----isReversed: 0 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACNCUCUAGGAGG hit 25 : 183 319 (fwd) 112.53 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUU + CGAGG:GCG:UUAU:GC 183 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUU--UGCGAGGUGCGUUUAUUGC 239 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:GC:U++GC 240 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGGCAUACGC 297 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A C::+++::G 298 AAUUUUUGAAC-NCUCUAGGAGG 319 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45030,sp|X51383.1|CESNU42 Caenorhabditis elegans DNA encoding U4-2 snRNA ----isReversed: 0 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG hit 26 : 153 291 (fwd) 124.25 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 153 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 210 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:GC:U++GC 211 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGGCAUACGC 268 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::+++::GG 269 AAUUUUUGAACGCCUCUAGGAGG 291 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45031,sp|X51384.1|CESNU43 Caenorhabditis elegans DNA encoding U4-3 snRNA ----isReversed: 0 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG hit 27 : 287 425 (fwd) 124.25 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 287 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 344 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:GC:U++GC 345 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGGCAUACGC 402 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::+++::GG 403 AAUUUUUGAACGCCUCUAGGAGG 425 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45156,sp|Z74042.1|CET11F9 Caenorhabditis elegans cosmid T11F9 ----isReversed: 0 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG hit 28 : 20147 20285 (fwd) 124.25 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 20147 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 20204 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:GC:U++GC 20205 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGGCAUACGC 20262 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::+++::GG 20263 AAUUUUUGAACGCCUCUAGGAGG 20285 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45156,sp|Z74042.1|CET11F9 Caenorhabditis elegans cosmid T11F9 ----isReversed: 1 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAAAGCCUCUAGGAGG hit 29 : 30433 30295 (rev) 126.84 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 7282 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 7339 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:GC:U++GC 7340 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGGCAUACGC 7397 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+AAGCC::+++::GG 7398 AAUUUUUGAAAGCCUCUAGGAGG 7420 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #45378,sp|X07828.1|CEU4 Caenorhabditis elegans U4 small nuclear RNA ----isReversed: 0 ----hitSequence: AGCUUUGCGCUGGGGCGAUAACGUGACCAAUGAGGCUUUGCCGAGGUGCGUUUAUUGCUGGUUGAAAACUUUUCCCAAUUGCCCGCGAUGUCCCCUGAAACAUGGGUGGCAUACGCAAUUUUUGAACGCCUCUAGGAGG hit 30 : 1 139 (fwd) 124.25 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC +GGGGC:AUA:CGU :CCA+UGAGGCUUU CCGAGG:GCG:UUAU:GC 1 AGCUUUGCGC-UGGGGCGAUAACGUGACCAAUGAGGCUUU-GCCGAGGUGCGUUUAUUGC 58 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UUGAAAACU+UUCCCAA: GCCCGC+ A:G :+:C:UG++A AU:G:+:GC:U++GC 59 UGGUUGAAAACUUUUCCCAAUUGCCCGCG-AUG-UCCCCUGAAACAUGGGUGGCAUACGC 116 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+A GCC::+++::GG 117 AAUUUUUGAACGCCUCUAGGAGG 139 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #68,sp|K03095.1|DM4 D. melanogaster U4 small nuclear RNA. ----isReversed: 0 ----hitSequence: AGCUUAGCGCAGUGGCAAUACCGUAACCAAUGAAGCCUCCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAACCCACGCCAUGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCUUACGAGGG hit 31 : 1 139 (fwd) 114.47 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUU GCGC AG GGCAAUA:CGUA:CCA+UGA GC U C+GAGG:GCG:UUAUUGC 1 AGCUUAGCGC-AGUGGCAAUACCGUAACCAAUGAAGCCUC-CCUGAGGUGCGGUUAUUGC 58 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UAGUUGAAAACU+U CCAAC +C CGCC :+G +GAC:+G++AUA+:GUC++C+: GGC 59 UAGUUGAAAACUUUAACCAAC-CCACGCC-AUG-GGACGUGAAAUACCGUCCACUACGGC 115 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUGGAAGCCCU++ +AGGG 116 AAUUUUUGGAAGCCCUUAcGAGGG 139 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4638,sp|D00042.1|DMU4NR1 Drosophila melanogaster U4 small nuclear RNA gene (U4-1). ----isReversed: 0 ----hitSequence: AACAGUGCUGAGCUCAUCAUCGUAACCAAUGAAGUUCUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG hit 32 : 513 650 (fwd) 90.86 bits :::::::::::::::::<<-.<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGCGCUAGGGGCaaU.aucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 A C G GC +G G :AU AUCGUA:CCA+UGA G+U+U AC+GAGG:GCGAUUAU:G 513 AAC--AGUGC-UGAGCUCAUcAUCGUAACCAAUGAAGUUCU-ACUGAGGUGCGAUUAUUG 568 ,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 60 CUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 CUA:UUGAAAACU+U CCAA:++CCCGCC :+G:+GAC:+G++AUA+:GUC+:C+: GG 569 CUAGUUGAAAACUUUAACCAAUACCCCGCC-AUGGGGACGUGAAAUACCGUCCACUACGG 627 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 CAAUUUUUGGAAGCCC: +:GGG 628 CAAUUUUUGGAAGCCCGA-GAGGG 650 ----endhit ----hitSequence: AUCUUUGCGCAGAGGCGAUAUCGUAACCAAUGAAGUUCUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG hit 33 : 321 459 (fwd) 126.48 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGC AG GGC:AUAUCGUA:CCA+UGA G+U+U AC+GAGG:GCGAUUAU:GC 321 AUCUUUGCGC-AGAGGCGAUAUCGUAACCAAUGAAGUUCU-ACUGAGGUGCGAUUAUUGC 378 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+U CCAA:++CCCGCC :+G:+GAC:+G++AUA+:GUC+:C+: GGC 379 UAGUUGAAAACUUUAACCAAUACCCCGCC-AUGGGGACGUGAAAUACCGUCCACUACGGC 437 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUGGAAGCCC: +:GGG 438 AAUUUUUGGAAGCCCGA-GAGGG 459 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #4639,sp|D00043.1|DMU4NR2 Drosophila melanogaster U4 small nuclear RNA gene (U4-2). ----isReversed: 0 ----hitSequence: AUCUUUGCGCAGUGGCAAUACCGUAACCAAUGAAGUCCUCCUGAGGUGCGGUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGG hit 34 : 320 458 (fwd) 123.94 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGC AG GGCAAUA:CGUA:CCA+UGA G+ +U C+GAGG:GCG:UUAUUGC 320 AUCUUUGCGC-AGUGGCAAUACCGUAACCAAUGAAGUCCU-CCUGAGGUGCGGUUAUUGC 377 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+U CCAA:++CCCGCC :+G:+GAC:+G++AUA+:GUC+:C+: GGC 378 UAGUUGAAAACUUUAACCAAUACCCCGCC-AUGGGGACGUGAAAUACCGUCCACUACGGC 436 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUGGAAGCCC: +:GGG 437 AAUUUUUGGAAGCCCGA-GAGGG 458 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11337,sp|Z46971.2|LMLAPGN Leishmania mexicana MBAP gene for membrane-bound acid phosphatase ----isReversed: 1 ----hitSequence: AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGGUGAUUGUUCACUUAGUGCUGAACUAAAGACUCCAUUACUCCUAUUGCAGGGAAUAUUUGAUCCCACCACGGG hit 35 : 6456 6347 (rev) 21.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-.->>, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauU.AuuG 59 A+C UUGCGC AGGG A U:U::: :::A GA CU++ +GA::::::A:U A+UG 369 AGCCUUGCGC-AGGGAGA-UGUGAACGCAA--GAACCUCA-GGUGAUUGUUCACUuAGUG 423 ,,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>> 60 CUAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuu 116 CU+: ACUA CCA+:++ :CC+ + UU+ C 424 CUGA------ACUAAAgacUCCAUUAC---UCCU----A------UUG------C----- 453 >>>>,,,,,,,,,,,,<<<<___>>>> 117 uggcAAUUUUUGGAAGcccuccaaggg 143 +GG:AAU UUUG+ CCC:CCA:GGG 454 AGGGAAUAUUUGAU--CCCACCACGGG 478 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11712,sp|AJ245951.1|LSE245951 Leptomonas seymouri tRNA-Gly, tRNA-Pro and U4 snRNA genes ----isReversed: 0 ----hitSequence: AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCCGGUGAUUGUUCACUUAGUGCUUAACUAAAAACUCCAGUACUCCUAUCACAGGGAAUAUUUGAUCCUACCAAGG hit 36 : 444 552 (fwd) 17.42 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-.->>, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauU.AuuG 59 A+C UUGCGC AGGG A U:U::: :::A GA CU+ +GA::::::A:U A+UG 444 AGCCUUGCGC-AGGGAGA-UGUGAACGCAA--GAACCUCC-GGUGAUUGUUCACUuAGUG 498 ,.,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>> 60 C.UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuug 118 C UA::U AAAACU C A::++ :CC+ +U +G 499 CuUAACUAAAAACU----CCAGUAC---UCCU-----------AUCAC----------AG 530 >>,,,,,,,,,,,,<<<<___>>>> 119 gcAAUUUUUGGAAGcccuccaaggg 143 G:AAU UUUG+ CC: CC :GG 531 GGAAUAUUUGAU--CCUACC-AAGG 552 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #11899,sp|X97621.1|LTMEDRNA5 Leishmania tarentolae DNA for mini-exon and U4 snRNA gene ----isReversed: 1 ----hitSequence: AGCCUUGCGCAGGGAGAUGUGAACGCAAGAACCUCAGGUGAUUGUUCACUUAGUGCUGAACUAAAGACUCCAUCACUCCUAUUGCAGGGAAUAUUUGAACCACCAAGGGUG hit 37 : 386 276 (rev) 20.84 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-.->>, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauU.AuuG 59 A+C UUGCGC AGGG A U:U::: :::A GA CU++ +GA::::::A:U A+UG 160 AGCCUUGCGC-AGGGAGA-UGUGAACGCAA--GAACCUCA-GGUGAUUGUUCACUuAGUG 214 ,,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>> 60 CUAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuu 116 CU+: ACUA CCA+:++ :CC+ + UU+ C 215 CUGA------ACUAAAgacUCCAUCAC---UCCU----A------UUG------C----- 244 >>>>,,,,,,,,,,,,<<<<___>>>> 117 uggcAAUUUUUGGAAGcccuccaaggg 143 +GG:AAU UUUG+A C:C: ++:G:G 245 AGGGAAUAUUUGAAC-CACCAAGGGUG 270 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #16480,sp|Z98547.2|PFMAL3P3 Plasmodium falciparum MAL3P3 ----isReversed: 0 ----hitSequence: AUCUUUGCGGGAGGGGCAGUAUCGCUGUAAAUGACGACUAACGGAUACGCGAUUAUUGCUAGUUGAAAACUACUCCAAUUCCCGUCUCGAUGCUUGAAAAAGCAGAGAGCAAUUUUUGUAGCCUUUCUUUAUAAAGG hit 38 : 38134 38270 (fwd) 74.84 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCG AGGGGCA:UAUCG: G::A+UGA G U+ AC GA::C:CGAUUA:UGC 38134 AUCUUUGCGGGAGGGGCAGUAUCGCUGUAAAUGACGACUA-ACGGAUACGCGAUUAUUGC 38192 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACUA UC CAA: +CC G: +::::C: G++A :G:::: :C 38193 UAGUUGAAAACUACUC-CAAUUCCC-GUCU--CGAUGCUUGAAA--AAGCAGA---GAGC 38243 ,,,,,,,,,,,,<<<<__....._>>>> 121 AAUUUUUGGAAGcccucc.....aaggg 143 AAUUUUUG AGCC:U+C AA:GG 38244 AAUUUUUG-UAGCCUUUCuuuauAAAGG 38270 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #17921,sp|X13840.1|PPU4SNR Physarum polycephalum U4 small nuclear RNA ----isReversed: 0 ----hitSequence: UUUGCGCUUGGGGCAAUAUUAUAGCGCGUGACCGAAAGGGAUGCAUAAUUAUUGCUAGUUGAAAACUAAUCUAAUGGCUGCGGUGACCCCUCGUGGUCAGGCUGCAAUUUUUGAAAAAGCU hit 39 : 1 121 (fwd) 69.26 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 UUUGCGCU+GGGGCAAUAU::+AGC: GUGA C +AA GA:GC+::AUUAUUGC 1 ---UUUGCGCUUGGGGCAAUAUUAUAGCGCGUGA--CCGAAAGGGAUGCAUAAUUAUUGC 55 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU:AAAACUA UC :AA: G C GC+ ++G ++:C:++ U+ +:G:+ U+ C 56 UAGUUGAAAACUAAUC-UAAU-GGCUGCG-GUG-ACCCCUCGUGGUCAGGC-----UG-C 105 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+AA ++CU 106 AAUUUUUGAAAAAGCU------- 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #22506,sp|M25777.1|TBURNAC Trypanosoma small nuclear RNA (uRNA C) gene. ----isReversed: 0 ----hitSequence: AGCCUUGCGCAGGGAGGUGUGAACGCAAGAUCCUCAGGUGAUUGUUCACUAGUGCAAUACUAUAUCCGGUACUCCUUCGGGGAAAGUUUGCUACCCACCACGGG hit 40 : 131 234 (fwd) 37.94 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+C UUGCGC AGGG : U:U::: :::A GA CU++ +GA::::::A:UA+:GC 131 AGCCUUGCGC-AGGGAGG-UGUGAACGCAA--GAUCCUCA-GGUGAUUGUUCACUAGUGC 185 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 A: ACUAU CC+++: ::C: UU :G: 186 AAU------ACUAUAuCCGGUA-----CUCC-----------UUC------------GGG 211 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 :AA UUUG A CCC:CCA:GGG 212 GAAAGUUUGCUA-CCCACCACGGG 234 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #24915,sp|X58844.1|TTU41 T.thermophila U4.1 snRNA ----isReversed: 0 ----hitSequence: ACCUCGCGACAGGGGCAAUAUAGCAGCAAGUGACGGUUAACUGAUGCGCUAUUAUUGCUAGUUGAAAACUACUUCAAUAAGUGGAAACGACGCUUGCGUCGGGUCCCAAUUUCUGGAAGGUCGUAUGAC hit 41 : 2 130 (fwd) 91.48 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A C U GCG +AGGGGCAAUAU:G:AGC:AGUGA G UU+ AC+GA:GC:C:AUUAUUGC 2 ACC-UCGCGACAGGGGCAAUAUAGCAGCAAGUGACGGUUA-ACUGAUGCGCUAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACUA U CAA:+ G:+ +A:ACGAC: +UU+ :GUCGG: U+:C 60 UAGUUGAAAACUACUU-CAAUAA---GUG-GAAACGACG-CUUG---CGUCGGG--UCCC 108 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUU+UGGAAG::C:++ :G:: 109 AAUUUCUGGAAGGUCGUA-UGAC 130 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7155,sp|AC097268.10|AC097268 Pan troglodytes BAC RP43-43O8 (Roswell Park Cancer Institute) complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCGUAGCCAGUGAGGUUUAUCGGAGGUGUGAUCACUGCUAAUUGAAAACUUUUCUAUAAAGGAACUGGUCUGUAGUUAAAAAAAAAAAAUCAGUGUCACAAAGGACAAGGAAAUAUGCAACAUGUAAUCUU hit 42 : 121408 121258 (rev) 43.58 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAUC UA CCAGUGAGG+UU+ +C GAGG G GAU A:UGC 119871 AGCUUUGUGC-AGUGGCAGUAUCGUAGCCAGUGAGGUUUA-UCGGAGGUGUGAUCACUGC 119928 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____................ 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua................ 104 UA:U :AAAACU+UUC : A:+G ::C+ G:::: ::GUUA 119929 UAAUUGAAAACUUUUCUAUAAAGG--AACU--GGUCUGUAGUUAaaaaaaaaaaaucagu 119984 ..__>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 ..uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 A:: ::::C +G::AAU U G AA :::++A::: 119985 guCACAAAGGACA-AGGAAAUAU--GCAA-CAUGUAAUCUU 120021 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4600,sp|AC012104.6|AC012104 Mus musculus chromosome , clone CT7-478J15, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAACUGAAUUAGCUCCUGAGCAGGCCAACUGCCUUCUACAUGAGCCCAAGUCUCGCCCGAGCUA hit 43 : 122955 122833 (rev) 41.60 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 1419 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 1476 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: ACU + :C+ G:+: AG:C+ ::UG U U:: +G: :+:C 1477 UAA------ACUGAAUUAGCUCCU--GAGC-AGGCCAACUGCCUUCUACAUGA---GCCC 1524 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA U U G G++CU A 1525 AAGUCUCGCCCGAGCU--A---- 1541 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4703,sp|AC068665.3|AC068665 Mus musculus chromosome 5 clone RP23-426K16 strain C57BL6/J, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUACUGUAGGUAGGUUUAUCUGAGGCGCGAUUAUUGCUAAUUGAAAAUUGGGAUACAUAUAUUUCAAUUCAUAGUAACCUGUGGUGACUGGCCACUAUAUAAAAUAGUAUAG hit 44 : 182336 182208 (rev) 17.87 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UA GUAG :A GG+UU+ +C+GA: CGC UUA:UGC 23602 AGCUUUGUGC-AGUGGCAGUACUGUAGGUA----GGUUUA-UCUGAGGCGCGAUUAUUGC 23655 ,,<<<<______..._____>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>.>> 61 UAgUugAAAACU...AUUCCcaAccgCCCgccuaagacgacauguuauauugucggc.uu 116 UA:U :AAAA U AU C : A: ::: : ::::A:A: ++ :U:U:::: : 23656 UAAUUGAAAAUUgggAUAC-AUAU-----AUUUCAAUUCAUAGUAAC--CUGUGGUGaCU 23707 >>>>,,,,,,,,,,,,<<<<___>>>> 117 uggcAAUUUUUGGAAGcccuccaaggg 143 :::A U U U +AA ++ ++++ 23708 GGCCACUAUAUAAAAUAGUAUAG---- 23730 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4792,sp|AC079245.35|AC079245 Mus musculus chromosome 9 clone rp23-426k2 strain C57BL/6J, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGUAGUGGCAAUAUCAUAGCCAAUGAGGUUUAUCCAAGGGGCAAUUAUUGCUAAUUAAAGGCAACUCUUUAAAAAACAAAUAAGCAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGUGUGUGUG hit 45 : 173972 173840 (rev) 22.02 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCG AG GGCAAUAU :UA:CCA+UGAGG+UU+ +CC AGG:G: AUUAUUGC 39127 AGCUUUGCGU-AGUGGCAAUAUCAUAGCCAAUGAGGUUUA-UCCAAGGGGCAAUUAUUGC 39184 ,,<<<<__..._________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAA...AACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA:UU AA AACU UU AA:++ :::U:AG :::: +UAUA:::: U:U 39185 UAAUUAAAggcAACUCUUUAAAAAAC---AAAUAAG---CAUAUAUAUAUAUA----UAU 39234 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 ::: AU U UG G: ::+ +:: : 39235 AUAUAUGUGUGUGUGUGUGU-GUGUG 39259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4840,sp|AC084070.57|AC084070 Mus musculus chromosome 5 clone rp23-268d19 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCUGAGGCGCGAUUAUUGCAAUUGAAAAACCCUCACGGUCAGCCCCUUUUGCAGCUUUGAUUGGUUGUAACUGCUUAGAAG hit 46 : 331438 331557 (fwd) 47.24 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +C+GAGGCGCGAUUA:UGC 331438 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCUGAGGCGCGAUUAUUGC 331495 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 A : AAAAC U C : +GCCC: :U +G ++ + U: : 331496 AAUUGAAAAACCCUCACGGUCAGCCCCUUU---------UGCAG--C---------UUUG 331535 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 A U UUG AA C: :+ A: :G 331536 AUUGGUUGUAA-CUGCUUAGAAG 331557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4856,sp|AC084322.17|AC084322 Mus musculus chromosome 5 clone rp23-376e18 strain C57BL/6J, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCUGAGGCGCGAUUAUUGCAAUUGAAAAACCCUCACGGUCAGCCCCUUUUGCAGCUUUGAUUGGUUGUAACUGCUUAGAAG hit 47 : 25559 25678 (fwd) 47.24 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +C+GAGGCGCGAUUA:UGC 25559 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCUGAGGCGCGAUUAUUGC 25616 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 A : AAAAC U C : +GCCC: :U +G ++ + U: : 25617 AAUUGAAAAACCCUCACGGUCAGCCCCUUU---------UGCAG--C---------UUUG 25656 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 A U UUG AA C: :+ A: :G 25657 AUUGGUUGUAA-CUGCUUAGAAG 25678 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5328,sp|AC108950.4|AC108950 Mus musculus chromosome 9 clone RP23-458E21, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCGUAGUGGCAAUAUCAUAGCCAAUGAGGUUUAUCCAAGGGGCAAUUAUUGCUAAUUAAAGGCAACUCUUUAAAAAACAAAUAAGCAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGUGUGUGUG hit 48 : 100524 100656 (fwd) 22.02 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCG AG GGCAAUAU :UA:CCA+UGAGG+UU+ +CC AGG:G: AUUAUUGC 100524 AGCUUUGCGU-AGUGGCAAUAUCAUAGCCAAUGAGGUUUA-UCCAAGGGGCAAUUAUUGC 100581 ,,<<<<__..._________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAA...AACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA:UU AA AACU UU AA:++ :::U:AG :::: +UAUA:::: U:U 100582 UAAUUAAAggcAACUCUUUAAAAAAC---AAAUAAG---CAUAUAUAUAUAUA----UAU 100631 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 ::: AU U UG G: ::+ +:: : 100632 AUAUAUGUGUGUGUGUGUGU-GUGUG 100656 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5425,sp|AC112662.7|AC112662 Mus musculus, clone RP23-467F2, complete sequence. ----isReversed: 0 ----hitSequence: AGUUUUGAUCAGUGGCAAAAUGGAAAUCAGUGAGCUUUACCUGACGGUUGAUUAUUGCUCACUGAAAACAAUUGUAUAAAUCCACACCAAUAGUAUCAGGAUGGAAACAGAAUAGACAAGCAAACUAAGCAACUCAUUCAUGU hit 49 : 49134 49276 (fwd) 12.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUG C AG GGCAA AU :A AGUGAG +UU+ C+GA : AUUAUUGC 49134 AGUUUUGAUC-AGUGGCAAAAUGGAAAUCAGUGAGCUUUA-CCUGACGGUUGAUUAUUGC 49191 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<____..__>>>>>>>>>> 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguua..uauugucggcuu 116 U ::U:AAAAC AUU :A:: +C C:C : :::: :C :G+U+ A: G: :::: 49192 UCACUGAAAACAAUUguAUAAAU-CCACACCAAUAGUAUCAGGAUGgaAACAGAAUAGAC 49250 >>>>,,,,,,,,,,,,<<<<___>>>> 117 uggcAAUUUUUGGAAGcccuccaaggg 143 : G:AA U G AA :C:U+C A:G: 49251 AAGCAAACUAAGCAACUCAUUC-AUGU 49276 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5434,sp|AC113004.13|AC113004 Mus musculus, clone RP23-250M13, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUGUAGUAGCCAUAUUGUAGCCAGUGAGGUUUAUCUGAGGCAAAAUUAUUGCUAAUUGAAAUUCUUCCCAAUACAUUGCCGCAACAACUUGCAAUACAGUCGGCAUUGACAAUUGUUGGCAGGAUGUAUGGAGACUAAAUAAC hit 50 : 176261 176409 (fwd) 63.86 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG G AG GC:AUAU: +AGCCAGUGAGG+UU+ +C+GAGGC+ :AUUAU:GC 176261 AGCUUUGUGU-AGUAGCCAUAUUGUAGCCAGUGAGGUUUA-UCUGAGGCAAAAUUAUUGC 176318 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAA A U UUCCCAA:++ G C :::AC AC:+G +AUA+:GU GG:::UG C 176319 UAAUUGAA-AUUCUUCCCAAUACAUUGCC-GCAACAACUUGCAAUACAGUCGGCAUUGAC 176376 ,,,,,,,,,,,,<<<<__.........._>>>> 121 AAUUUUUGGAAGcccucc..........aaggg 143 AAUU UUGG AG: ::++ A:: : 176377 AAUUGUUGGCAGGAUGUAuggagacuaaAUAAC 176409 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5444,sp|AC113127.6|AC113127 Mus musculus, clone RP23-352H13, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCACAGCAGCAGUAUCGUAGCCAAUGAGGCUUAUCCAAGGCAGGAUUAUUGUUAAUUGAAAACUGUUUUUCUUUUGUGCUGUAUUUAUUUAUUUAUUUAUUUAUUCAUUCAUUCAUUCAUUCAUUUUUUAUAGCAACAAAGACU hit 51 : 162233 162084 (rev) 24.06 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GCA:UAUC +AGCCA+UGAGGCUU+ +CC AGGC+ GAUUA:UG 23569 AGCUUUGCAC-AGCAGCAGUAUCGUAGCCAAUGAGGCUUA-UCCAAGGCAGGAUUAUUGU 23626 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<____.............. 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguua.............. 104 UA: :AAAACU UU C: : :+ ::G::: :A UUA 23627 UAAUUGAAAACUGUUuuUCUUUU-----GUG-CUGUAUUUA-UUUAuuuauuuauuuauu 23679 __>>>>>>>>>>>>>>.,,,,,,,,,,,,<<<<___>>>> 105 uauugucggcuuuggc.AAUUUUUGGAAGcccuccaaggg 143 A U: :::C::U+: AUUUUU + AG :: +A:: 23680 CA-UUCAUUCAUUCAUuCAUUUUUUAUAGCAACAAAGACU 23718 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5469,sp|AC114005.5|AC114005 Mus musculus chromosome 8 clone RP23-179L18, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUUCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCACAAUUAUUGCUAACUGAAAGAUUUAAAGAAAGAAAGUGAAAAAGAUCUCAGAAGAUGGAAAAACCUCCUAUGCUCAUAGAUC hit 52 : 70581 70452 (rev) 32.74 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUU CGC AG GGCA:UAU G+AGCCA+UGAGG+UU+ +CCGAGGC+C AUUA:UGC 144152 AGCUUUUCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCACAAUUAUUGC 144209 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>.>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauuguc.ggcuuugg 119 UA::U:AAA U+U :A:: ::+ :::::GA:A +++ A U:UC :::::U+: 144210 UAACUGAAAGAUUUA--AAGA-----AAG-AAAGUGAAA--AAG-A-UCUCaGAAGAUGG 144257 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 :AA +U A : :: A:: : 144258 AAAAACCUCCUAUGCUCAUAGAUC 144281 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5618,sp|AC117206.3|AC117206 Mus musculus chromosome 5 clone RP23-260L17, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUCCAUAGUGGAAUUAUUGCAGCCAGUGAGGUUUAUCUGAGGCGUGGUUAUUGCUAAUUGAAAUUAUAGAUGCUGUCCAAUUGUUUUAUAGUAUUUUACCCACACCUUUUUCAAAAGGACUUCCAGAAAAUA hit 53 : 840 975 (fwd) 20.60 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUU C AG GG A+UA :AGCCAGUGAGG+UU+ +C+GAGGC: UUA+UGC 840 AGCUUUCCAU-AGUGGAAUUAUUGCAGCCAGUGAGGUUUA-UCUGAGGCGUGGUUAUUGC 897 ,,<<<<_________.......__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>> 61 UAgUugAAAACUAUU.......CCcaAccgCCCgccuaagacgacauguuauauugucgg 113 UA:UUGAA A UAU CCAA: : :U:+:::G:::+ U+ +:::C:: 898 UAAUUGAA-AUUAUAgaugcugUCCAAU-----UGUUUUAUAGUAUUUUAC-CCACACCU 950 >>>>>>>,,,,,,,,,,,,<<<<___>>>> 114 cuuuggcAAUUUUUGGAAGcccuccaaggg 143 :+:U: :AA +U AG+ ++++ 951 UUUUCAAAAGGACUUCCAGAAAAUA----- 975 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6022,sp|AC122057.3|AC122057 Mus musculus chromosome 9 clone RP24-468F14, complete sequence. ----isReversed: 1 ----hitSequence: AUCUGCUCUUAGUUGUAGUAUCAUAGCUAAUGAGGUUUAUCCUAGGCACAAUUAUUGCUAAUUAAAAACUUUUCCCAAUACCCUGCCGUGACAACUUGCAGUACACUCAGCAAUUGGCAAUUUUUUACAGUCUCUACAGAGA hit 54 : 85081 84940 (rev) 64.65 bits ::::::::::.:::::::<<-<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGCGC.UAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 AUC UGC C UAG G A:UAU :+AGC:A+UGAGG+UU+ +CC A:GC+: AUUA:UG 84735 AUC--UGCUCuUAGUUGUAGUAUCAUAGCUAAUGAGGUUUA-UCCUAGGCACAAUUAUUG 84791 ,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>.>>>> 60 CUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggc.uuug 118 CUA:UU AAAACU+UUCC AA:++CC GCC ::GA A :+G ++UA+: U GC ::UG 84792 CUAAUUAAAAACUUUUCCCAAUACCCUGCC-GUGACAACUUGCAGUACACUCAGCaAUUG 84850 >>,,,,,,,,,,,,<<<<__._>>>> 119 gcAAUUUUUGGAAGcccucc.aaggg 143 GCAAUUUUU + AG:C::++ A::G: 84851 GCAAUUUUUUACAGUCUCUAcAGAGA 84876 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6055,sp|AC122241.4|AC122241 Mus musculus chromosome 15 clone RP23-146M20, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGUGGCAGGCUUGUAGCCGAUGAGGUUUAUCUGAGGGCGUGAUUAUUUCUAAUUGAAAACUUCAUUACUUAUUCAGGAUUGCUUACUCUAUUUGAAGGUCAUAUUUCCUUAAAUUCUAAGAGAUUUUUGAAG hit 55 : 105098 105239 (fwd) 29.06 bits :::::::::::::::::<<-<<<<<-<<<_________________.>>>>>>>>-->>, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGA.ggcgcgauUAuuG 59 A+CUUUG GC AG GGCA: U UAGCC +UGAGG+UU+ +C+GA GGCG A UA:U 105098 AGCUUUGUGC-AGUGGCAGGCUUGUAGCCGAUGAGGUUUA-UCUGAgGGCGUGAUUAUUU 105155 ,,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>... 60 CUAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggc... 114 CUA:U :AAAACU+ C: A: + : + A+: C :::U+U+ U::: G : 105156 CUAAUUGAAAACUUCAuuACUUAUUC---AGG-AUUGCUUACUCUAU-UUGAAGGUCaua 105210 .>>>>>>,,,,,,,,,,,,<<<<___>>>> 115 .uuuggcAAUUUUUGGAAGcccuccaaggg 143 +U + :AA UU+U + AG::::+ :::: 105211 uUUCCUUAAAUUCUAAGAGAUUUUU-GAAG 105239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7487,sp|AC132684.3|AC132684 Mus musculus chromosome 9 clone RP23-277L20, complete sequence. ----isReversed: 0 ----hitSequence: CGCAUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUUGGAGGCACGAUUAUUGCUAAUUGAAAGAAAGCAAACUGAGAAAGUCAUGGAUAACAAACAUGGAUAAGAAGUCUGUAGUCUGUGCUUCAG hit 56 : 128360 128489 (fwd) 18.82 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 +C UGCGC AG GGCA:UAUCG+AGCCA+UGAGG+UU+ + GAGGC+CGAUUA:UGC 128360 CGC-AUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UUGGAGGCACGAUUAUUGC 128416 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAA A CAA: :: : : :G: +G + A+ :C: : :U :: 128417 UAAUUGAAA--GAAAG-CAAA-----CUG-AGAAAGUCAUGGAUAACAAACAUGGAUAAG 128467 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA U+UG A C: C :G 128468 AA-GUCUGUAGUCUGUGCUUCAG 128489 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7644,sp|AE014182.1|AE014182 Mus musculus piebald deletion region section 10 of 11 of the complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUUAUCGUAGCCAAUGAGGUUUAUCUGAGGCGUGAUUAUUGCUAGCUGAAGACUUUUCCCAGCCUCUGUCAUUAUACCAAAAUAGUUAAGAUGAUAAACACGGAAGCUUGCUUUAUG hit 57 : 364170 364037 (rev) 54.07 bits :::::::::::::::::<<-.<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGCGCUAGGGGCaaU.aucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 A+CUUUG GC AG GGCA:U AUC UAGCCA+UGAGG+UU+ +C+GAGGCG GAUUA:UG 35860 AGCUUUGUGC-AGUGGCAGUuAUCGUAGCCAAUGAGGUUUA-UCUGAGGCGUGAUUAUUG 35917 ,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 60 CUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 CUAG:UGAA ACU+UUCCCA:C :CU++ A::A: +++A :U::G UG: 35918 CUAGCUGAAGACUUUUCCCAGC-----CUCUGUCAUUAUACCAAAAUAGUUAAGA--UGA 35970 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 AA + GGAAGC ::C :: G 35971 UAAACAC-GGAAGCUUGCUUUAUG 35993 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23796,sp|AL355176.10|AL355176 Mouse DNA sequence from clone RP21-505L19 on chromosome 5 ----isReversed: 1 ----hitSequence: AGCUUUAUACAUUGGUAGUGUUAUAGCCAGUGAUGUUUAUCUGAGGUGCAAUUAUAGCUAACUGAAAACUUUUCUGGAUACCCUGCUGUUAUAACUUGAAAUAUAGUUGGCAUUGGCAAUUUUUGAUAGUUUCUAUGGAAA hit 58 : 130740 130600 (rev) 66.50 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUU C A GG :U U::UA CCAGUGA G+UU+ +C+GAGG G::A UA: GC 20610 AGCUUUAUAC-AUUGGUAGUGUUAUAGCCAGUGAUGUUUA-UCUGAGGUGCAAUUAUAGC 20667 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA::: AAAACU+UUC :::++CC GC: :::A: AC:UG++AUAU:GU :G:::U:GC 20668 UAACUGAAAACUUUUCUGGAUACCCUGCU-GUUAUAACUUGAAAUAUAGUUGGCAUUGGC 20726 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG::::++ +:::: 20727 AAUUUUUGAUAGUUUCUAuGGAAA 20750 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #23801,sp|AL359381.8|AL359381 Mouse DNA sequence from clone CT7-87K14 on chromosome 17 ----isReversed: 1 ----hitSequence: AGCUUUUCACAGUGGCAGUAUUGUAGCCAAUGAGGUUUAUCCAAGGCAAGAUUAUUGCUAAUUGAGAACAUUUCUCCUCCACGUGUGUGCAUGGCAGCCAUCUCCUUGCUGUCUGUGUUGAGUCACUGAUAAUAUAGUGAAAUUUCCAUAC hit 59 : 43846 43696 (rev) 23.49 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUU C C AG GGCA:UAU +AGCCA+UGAGG+UU+ +CC AGGC+ AUUA:UGC 59072 AGCUUUUCAC-AGUGGCAGUAUUGUAGCCAAUGAGGUUUA-UCCAAGGCAAGAUUAUUGC 59129 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____................ 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua................ 104 UA: GA AAC +UUC C : :C ::G:+: CAUG A 59130 UAAUUGAGAACAUUUCUCCUC-----CAC-GUGUGUGCAUGGCAgccaucuccuugcugu 59183 ...__>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 ...uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 U UUG :+:C::UG: AAU U GAA :::UCC A::: 59184 cugUGUUG-AGUCACUGAUAAUAUAGUGAA-AUUUCC-AUAC 59222 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24990,sp|AL670851.6|AL670851 Mouse DNA sequence from clone RP23-414J20 on chromosome 4 ----isReversed: 1 ----hitSequence: AGCUUUGCGAAUUGGCUGUAUUGUAGUCCAUGAGGUUUAUCCGAGGCGCAAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCUGCCAUGAUGACUUGAAAUAAAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACUGAGAC hit 60 : 159966 159825 (rev) 101.11 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCG A GGC :UAU:GUAG C +UGAGG+UU+ +CCGAG CGC:AUUA: GC 48117 AGCUUUGCGA-AUUGGCUGUAUUGUAGUCCAUGAGGUUUA-UCCGAGGCGCAAUUAUUGC 48174 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CC GCC A:GA:GAC: G++AUA :GUC:GC:UUGGC 48175 UAAUUGAAAACUUUUCCCAAUACCCUGCC-AUGAUGACUUGAAAUAAAGUCGGCAUUGGC 48233 ,,,,,,,,,,,,<<<<__..._>>>> 121 AAUUUUUGGAAGcccucc...aaggg 143 AAUUUUUG+ A ::CUC +AG:: 48234 AAUUUUUGACA-GUCUCUacuGAGAC 48258 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25391,sp|AL691413.5|AL691413 Mouse DNA sequence from clone RP23-309E11 on chromosome 11 ----isReversed: 1 ----hitSequence: AGCUUUGAGCACUAGCUAUAACCUGUCUUCUCUGAGGUGCAAUUGUUGCUAAUUGAAUUAUCCCAAUACCUUACCACGAUGACUUGAAAUAUAGUCAGCAUUGACAAUUCCUGAUAGUCUCUAUAGAGA hit 61 : 109845 109717 (rev) 26.00 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC A GC AUA :CC GU CUU +C+GAGG:GC AUU U GC 54203 AGCUUUGAGC-ACUAGCUAUA-----ACCUGU----CUUC-UCUGAGGUGCAAUUGUUGC 54251 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAA U+ UCCCAA:++C : C A:GA:GAC:UG++AUAU:GUC:GC:UUG : 54252 UAAUUGAA---UUAUCCCAAUACCUUACC-ACGAUGACUUGAAAUAUAGUCAGCAUUGAC 54307 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUU +UG+ AG:C::++ A::G: 54308 AAUUCCUGAUAGUCUCUAuAGAGA 54331 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #25854,sp|AL732620.14|AL732620 Mouse DNA sequence from clone RP23-167G19 on chromosome 2 ----isReversed: 1 ----hitSequence: AGCUUUGCGUAGUGGCAGUAUUGUAGCCAGUGAGGUUUAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUCCCCAAUACCCUGUCAUGACUACCUGCAGUACAGUCAGCAUUGGCAAUUUCUGACAGUCUUUAUGGAGA hit 62 : 2320 2180 (rev) 100.34 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCG AG GGCA:UAU +AGCCAGUGAGG+UU+ +C+GAGGC+ AUUA:UGC 227797 AGCUUUGCGU-AGUGGCAGUAUUGUAGCCAGUGAGGUUUA-UCUGAGGCAUGAUUAUUGC 227854 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+U CCCAA:++CC G:C A:GA AC:+G ++UA+:GU GC:UUG:C 227855 UAAUUGAAAACUUUCCCCAAUACCCUGUC-AUGACUACCUGCAGUACAGUCAGCAUUGGC 227913 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUU+UG+ AG:C::++ +::G: 227914 AAUUUCUGACAGUCUUUAuGGAGA 227937 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26156,sp|AL805952.11|AL805952 Mouse DNA sequence from clone RP23-125H10 on chromosome 4 ----isReversed: 0 ----hitSequence: AUUUGCACAGCAGCAAUGCUGUAGCCAGUGAAGUAUAUCUGGAGAACUACUGCUAGUUGAAAACUUUCUCCAAAUUCUUAAGGAUGCUCUUCCUCGUAGAUUUGGAGAAUGAAGGCCCUUGCC hit 63 : 38808 38930 (fwd) 13.93 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A UUUGC C AG GCA U: : +A:C AGUGA G+ U+ +C G:+ : :UA UGC 38808 A--UUUGCAC-AGCAGCAAUGCUGUAGCCAGUGAAGUAUA-UC---UGGAGAACUACUGC 38860 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA UUGAAAACU+U CCAA ::C :A::+ : :++UU +: : +::U: G:: 38861 UAGUUGAAAACUUUCUCCAAA-----UUCUUAAGGAUGCUCUUCCUCGUA-GAUUUGGAG 38914 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAU GAA ::C C G:: 38915 AAU-----GAA-GGCCCU-UGCC 38930 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26454,sp|AL833781.5|AL833781 Mouse DNA sequence from clone RP23-447J12 on chromosome 4 ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUAGUAGCCAAUGAGGCUUAUCCAAGGCGCGUUUAUUGCUAAUUGAAAACUUAAAAUAUGGAGAGAACCCCUGGGUAUUUACUAUACAGUUAGAUUAACUCUAUUUAGUUAGUCACAG hit 64 : 39540 39404 (rev) 42.21 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UA GUAGCCA+UGAGGCUU+ +CC AGGCGC UUA:UGC 126161 AGCUUUGCGC-AGUGGCAGUAUAGUAGCCAAUGAGGCUUA-UCCAAGGCGCGUUUAUUGC 126218 ,,<<<<_________.......__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>> 61 UAgUugAAAACUAUU.......CCcaAccgCCCgccuaagacgacauguuauauugucgg 113 UA:U::AAAACU+ ::A:C+CC G + A: ::A +UA A U::+ 126219 UAAUUGAAAACUUAAaauauggAGAGAACCCCUGGG-UAU-UUACU--AUACA-GUUAGA 126273 >>>>>>>,,,,,,,,,,,,<<<<___>>>> 114 cuuuggcAAUUUUUGGAAGcccuccaaggg 143 :U ++ C AUUU AG::::+C :::: 126274 UUAACUCUAUUU-----AGUUAGUC-ACAG 126297 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26678,sp|AL844867.3|AL844867 Mouse DNA sequence from clone RP23-17B8 on chromosome X ----isReversed: 1 ----hitSequence: AGCUUUGUCCAGUGUCAGUAUCAUAGCCAGUGAGGUUUAUCCAAAGAAUGAUUAUUGCUAAUAGAUAGCUAGAGCUUUAGGCGAGUAUCAAGGCAUCCAUACGUCUGGGAAUGAUUAUAAUAUCCUUUGAC hit 65 : 78490 78360 (rev) 21.41 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG G CA:UAUC:+A C AGUGAGG+UU+ +CC A G +:GAUUA:UGC 96767 AGCUUUGUCC-AGUGUCAGUAUCAUAGCCAGUGAGGUUUA-UCCAAAGAAUGAUUAUUGC 96824 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 UA:U :A A CUA C : A: C+ A : :+ : :++U : : +: : U+G 96825 UAAUAGAUAGCUAGAgCUUUAG-----GCG-AGUAUCAAGGCAUC--CAUACGUC--UGG 96874 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 AAU UU AA ::C + G:: 96875 GAAUGAUUAUAAUAUCCUU-UGAC 96897 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26997,sp|AL928715.10|AL928715 Mouse DNA sequence from clone RP23-373D16 on chromosome 2 ----isReversed: 1 ----hitSequence: AGCUUGGCACAGUGGCAGUAUUGUAGCCAAUGAAGUUUAUCAGAGGUGCAAUUAUUACUAAUGGGAAGUUUGAACCAAUAUACUCUCUCCAAAACCCACUCAUUCUAUAGAAAUUCUUGCCAACGAGAAUUCCAUAUAUGAACCCCAGGGUAC hit 66 : 3810 3658 (rev) 22.51 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUU GC C AG GGCA:UAU:GUA CCA+UGA G+UU+ +C GAGG GC:AUUA:U C 133056 AGCUUGGCAC-AGUGGCAGUAUUGUAGCCAAUGAAGUUUA-UCAGAGGUGCAAUUAUUAC 133113 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<____.......__>>>>> 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguua.......uauuguc 111 UA:U:: AA U+ C ::A:++ C ::C:: : C+ : U++U AU : + 133114 UAAUGGGAAGUUUGAacCAAUAUACUCUCUCCAAAACCCACUCAUUcuauagaAAUUCUU 133173 >>>>>>>>>,,,,,,,,,,,,<<<<__..._>>>> 112 ggcuuuggcAAUUUUUGGAAGcccucc...aaggg 143 G : ::G::AAUU + + A : ::CC +:: : 133174 GCCAACGAGAAUUCCAUAUAUGAACCCcagGGUAC 133208 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #76728,sp|M10328.1|MMUR57S Mouse 5.7S U4 small nuclear RNA type a. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 67 : 2 142 (fwd) 130.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC A:GACGAC:UG++AUAU:GUCGGC:UUGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-AUGACGACUUGAAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #76729,sp|M18004.1|MMUR57T Mouse 5.7S U4 small nuclear RNA type b. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 68 : 2 142 (fwd) 129.24 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #2285,sp|AB023028.1|AB023028 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K20J1. ----isReversed: 1 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCU hit 69 : 96 1 (rev) 48.08 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:A+UGAGG+U+UAACCGA:GC:CG::UAUUGC 36148 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGC 36207 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+CC :C U++ 36208 UGGUUGAAAACUAUUuCCAAACCCCCUCC-------------UAG--------------- 36239 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 : CCU 36240 G-------------CCU------- 36243 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #2591,sp|AB026295.2|AB026295 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10. ----isReversed: 1 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUUAUGAGGUUAUACCGAGGCGCGUCAAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUUGGCCCACCCGGGCCACUGAGAAUUUCUGGAAGGGCUCUCUCUCUUCGGAGAGAGUAAAGCC hit 70 : 157499 157349 (rev) 91.41 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC: +UGAGG+U U ACCGA:GC:CG:: AUUGC 12873 AUCUUUGCGCUUGGGGCAAUGACGCAGCUUAUGAGGUUAU-ACCGAGGCGCGUCAAUUGC 12931 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::CU :G:C::: :::G:C: UG: 12932 UGGUUGAAAACUAUUuCCAAACCCC--CUCUUUGGCCCAC--------CCGGGCCACUGA 12981 >,,,,,,,,,,,,<<<<__.................._>>>> 120 cAAUUUUUGGAAGcccucc..................aaggg 143 :AAUUU+UGGAAG::CUC AAG:: 12982 GAAUUUCUGGAAGGGCUCUcucucuucggagagaguaAAGCC 13023 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #8693,sp|AC005405.1|AC005405 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUAGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC hit 71 : 5525 5375 (rev) 119.67 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:A+UGAGG+ UUAACCGA:GC:CG::UAUUGC 88838 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGC 88897 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C::AG:C: :A:+UU+ :U: :G:CU::G: 88898 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUAGGCCUAAGCUUG-UCUAGGGCCUUCGA 88954 >,,,,,,,,,,,,<<<<__.........._>>>> 120 cAAUUUUUGGAAGcccucc..........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 88955 GAAUUUCUGGAAGGGCUCCcuucgggguaAAGCC 88988 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #8969,sp|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence. ----isReversed: 0 ----hitSequence: AGCUAGUGCUAUAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCAUGGGCCUGGGCUUGACCUAUGGCCUUUGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC hit 72 : 17890 18036 (fwd) 84.98 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+C U G GCUA AAU::CG:AGC:A+UGAGG+ +UAACCGA:GC:CG::UAUUGC 17890 AGC-UAGUGCUA----UAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGC 17944 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C:::G:C: ::+UU+ :: :G:C:::G: 17945 UGGUUGAAAACUAUUuCCAAACCCC--CUCAUGGGCCUGGGCUUGACCUAUGGCCUUUGA 18002 >,,,,,,,,,,,,<<<<__.........._>>>> 120 cAAUUUUUGGAAGcccucc..........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 18003 GAAUUUCUGGAAGGGCUCCcuucgggguaAAGCC 18036 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9031,sp|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: AGCUAGUGCUAUAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCAUGGGCCUGGGCUUGACCUAUGGCCUUUGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC hit 73 : 23054 22908 (rev) 84.98 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+C U G GCUA AAU::CG:AGC:A+UGAGG+ +UAACCGA:GC:CG::UAUUGC 88248 AGC-UAGUGCUA----UAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGC 88302 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C:::G:C: ::+UU+ :: :G:C:::G: 88303 UGGUUGAAAACUAUUuCCAAACCCC--CUCAUGGGCCUGGGCUUGACCUAUGGCCUUUGA 88360 >,,,,,,,,,,,,<<<<__.........._>>>> 120 cAAUUUUUGGAAGcccucc..........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 88361 GAAUUUCUGGAAGGGCUCCcuucgggguaAAGCC 88394 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9081,sp|AC015986.4|AC015986 Arabidopsis thaliana chromosome 1 BAC T2E12 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGCGCUUGUGCAAAAUGACGCAGCUAAUGAGGUCUUAGUCUAAUACUGGUUGAAAACUAUUUCCAAACAUCUUCCUAGGCCUAGGCUUAUUUUGGACUUUCUAGAAUUUGUGGAAGUGCAUC hit 74 : 23477 23351 (rev) 30.54 bits :::::::::::::::.::<<-<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGCGCUAGGG.GCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 AUCUUUGCGCU+G G A U CG AG::A+UGAGG+ UU A::C UA U 11753 AUCUUUGCGCUUGUGcAAAAUGACGCAGCUAAUGAGGUCUU-----AGUC-----UAAUA 11802 ,,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>.>>> 60 CUAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggc.uuu 117 CU+GUU:AAAACUAUU CC:AAC+ C :: ::AG:C: :::+UUA ::: :G:C U:: 11803 CUGGUUGAAAACUAUUuCCAAACAUC--UUCCUAGGCCUAGGCUUA--UUUUGGACuUUC 11858 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 ::AAUUU UGGAAG +C++C 11859 UAGAAUUUGUGGAAGUGCAUC----- 11879 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9082,sp|AC016041.5|AC016041 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUGGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC hit 75 : 932 1082 (fwd) 120.96 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:A+UGAGG+U+UAACCGA:GC:CG::UAUUGC 932 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGC 991 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C:::G:C: :A:+UU+ :U: :G:C:::G: 992 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUGGGCCUAAGCUUG-UCUUGGGCCUUCGA 1048 >,,,,,,,,,,,,<<<<__.........._>>>> 120 cAAUUUUUGGAAGcccucc..........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 1049 GAAUUUCUGGAAGGGCUCCcuucgggguaAAGCC 1082 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9085,sp|AC016447.5|AC016447 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGCGCUUGUGCAAAAUGACGCAGCUAAUGAGGUCUUAGUCUAAUACUGGUUGAAAACUAUUUCCAAACAUCUUCCUAGGCCUAGGCUUAUUUUGGACUUUCUAGAAUUUGUGGAAGUGCAUC hit 76 : 224 98 (rev) 30.54 bits :::::::::::::::.::<<-<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGCGCUAGGG.GCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 AUCUUUGCGCU+G G A U CG AG::A+UGAGG+ UU A::C UA U 107593 AUCUUUGCGCUUGUGcAAAAUGACGCAGCUAAUGAGGUCUU-----AGUC-----UAAUA 107642 ,,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>.>>> 60 CUAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggc.uuu 117 CU+GUU:AAAACUAUU CC:AAC+ C :: ::AG:C: :::+UUA ::: :G:C U:: 107643 CUGGUUGAAAACUAUUuCCAAACAUC--UUCCUAGGCCUAGGCUUA--UUUUGGACuUUC 107698 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 ::AAUUU UGGAAG +C++C 107699 UAGAAUUUGUGGAAGUGCAUC----- 107719 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9093,sp|AC016827.7|AC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUGGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUUGGGGUAAAGCC hit 77 : 17430 17280 (rev) 117.82 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:A+UGAGG+ +UAACCGA:GC:CG::UAUUGC 72713 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGC 72772 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C:::G:C: :A:+UU+ :U: :G:C:::G: 72773 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUGGGCCUAAGCUUG-UCUUGGGCCUUCGA 72829 >,,,,,,,,,,,,<<<<__.........._>>>> 120 cAAUUUUUGGAAGcccucc..........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 72830 GAAUUUCUGGAAGGGCUCCcuuugggguaAAGCC 72863 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9254,sp|AC068901.8|AC068901 Arabidopsis thaliana chromosome 1 BAC F1O3 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: AUCGGCGCUUGGGGCACUGAUGCAAAUAGUGAUAUUUUAACUGAGGCACGUCUAUUACUUGCUGGUUGAAAACUGUUUCUAAACUUUCUCUUCGAUUUGGGCUUGGGUUUGGGCUUGAACCACGGCCUUUGAAUUUUUUUCCAAAGAUUC hit 78 : 66902 66753 (rev) 23.10 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>--.... 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUA.... 56 AUC GCGCU+GGGGCA:U:: G:A ::AGUGA +UUUAAC+GA:: :C ::UA 7364 AUC--GGCGCUUGGGGCACUGAUGCAAAUAGUGAUAUUUUAACUGAGGCACGUCUAuuac 7421 >>,,,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<____........... 57 uuGCUAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguua........... 104 :UGCU+GUU:AAAACU UU C :AAC C :C: ::GA: ::: +UU+ 7422 UUGCUGGUUGAAAACUGUUuCUAAACUUUC-UCU-UCGAUUUGGGCUUGgguuugggcuu 7479 __>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 A ::: :GC::U:G:A UUUUU A +++U+C 7480 GAACCACGGCCUUUGAAUUUUUUUCCAAAGAUUC----- 7513 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9264,sp|AC069160.7|AC069160 Arabidopsis thaliana chromosome 1 BAC T9I1 genomic sequence, complete sequence. ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACAUAGCUAAUGAGGUUUUAAACGAGACGCGUCUAUUGAUGGUUGACAACCAUUUCCACAACCCCAUCCUAGGCCUAAGCUUGUCUUUGGCCUUUGAGAAUUUCGAGACCAACACUAG hit 79 : 78990 79128 (fwd) 70.46 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::C:UAG :A+UGAGG+UUUAA CGA: CG:G::UAUUG 78990 AUCUUUGCGCUUGGGGCAAUGACAUAGCUAAUGAGGUUUUAAACGAGACGCGUCUAUUGA 79049 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>> 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcuuug 118 U+GUUGA AAC AUU C CAACC+C ::C::AG:C: :A:+UU+ :U: :G:CU::G 79050 UGGUUGACAACCAUUucCACAACCCC--AUCCUAGGCCUAAGCUUG-UCUUUGGCCUUUG 79106 >>,,,,,,,,,,,,<<<<___>>>> 119 gcAAUUUUUGGAAGcccuccaaggg 143 ::AAUUU+ G+ A C ::C+ :: G 79107 AGAAUUUC-GAGA-CCAACA-CUAG 79128 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9285,sp|AC069556.4|AC069556 Genomic Sequence For Arabidopsis thaliana Clone T1G16 From Chromosome V, complete sequence. ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUAUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUGGGCCUCUGAGAAUUUCUGGAAGAGCUCC hit 80 : 53184 53319 (fwd) 116.50 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:A+UGAGG+ UUAACCGA:GC:CG::UAUUGC 53184 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUAUUAACCGAGGCGCGUCUAUUGC 53243 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C: AG:C: :A:+UU+ :U: :G:CU :G: 53244 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUAGGCCUAAGCUUG-UCUUGGGCCUCUGA 53300 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 :AAUUU+UGGAAG++CUCC 53301 GAAUUUCUGGAAGAGCUCC----- 53319 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9896,sp|AC137830.6|AC137830 Medicago truncatula clone mth2-33g10, complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGUGUUUGGGGGCAAUGACACAGCUAACGAGCUUUUAACCAAGGCGUGUCUAUUGCUGCUGGUUGAAAACUAUUUUCAAAUCCCUUCUUAAGCUUAAGACAACUCAAGUCUUUGAGAAUUACUGGAAGGACUCCCUUUAAAGUAAAGUC hit 81 : 101635 101482 (rev) 73.15 bits ::::::::::::.:::::<<-<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGCGCUA.GGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 AUCUUUG G U+ GGGGCAAU::C::AGC:A+ GAG +UUUAACC A:GC::G::UAUUG 12221 AUCUUUGUGUUUgGGGGCAAUGACACAGCUAACGAGCUUUUAACCAAGGCGUGUCUAUUG 12280 ,,...,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>> 60 CU...AgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcu 115 CU +:UU:AAAACUAUU C:AA:C+C ::CU:A: C:::A: +A :U:::G :U 12281 CUgcuGGUUGAAAACUAUUuUCAAAUCCC--UUCUUAAGCUUAAGACAA--CUCAAGUCU 12336 >>>>>,,,,,,,,,,,,<<<<__.........._>>>> 116 uuggcAAUUUUUGGAAGcccucc..........aaggg 143 :UG::AAUU +UGGAAG::CUCC AAG:: 12337 UUGAGAAUUACUGGAAGGACUCCcuuuaaaguaAAGUC 12374 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #99395,sp|AP003760.4|AP003760 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05. ----isReversed: 1 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUAAUACCGAGGCGCGUCAAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUUGGCCCGUCAGGGCCACUGAGAAUUUCUGGAAGGGCUCCUUCUCUUCGGGGAGGGUAAAGCC hit 82 : 10053 9903 (rev) 97.16 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:AGUGAGG+ U ACCGA:GC:CG:: AUUGC 172629 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUAAU-ACCGAGGCGCGUCAAUUGC 172687 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::CU :G:C::+ U A ::G:C: UG: 172688 UGGUUGAAAACUAUUuCCAAACCCC--CUCUUUGGCCCG---UCA-----GGGCCACUGA 172737 >,,,,,,,,,,,,<<<<__.................._>>>> 120 cAAUUUUUGGAAGcccucc..................aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 172738 GAAUUUCUGGAAGGGCUCCuucucuucggggaggguaAAGCC 172779 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #100144,sp|AP006099.1|AP006099 Lotus corniculatus var. japonicus genomic DNA, chromosome 5, clone:LjT03D07, TM0180a. ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUUAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUAGGCCUGGGUUCACCCCUGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUUGGGGUAAAGCU hit 83 : 69439 69589 (fwd) 108.40 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC: +UGAGG+U+UAACCGA:GC:CG::UAUUGC 69439 AUCUUUGCGCUUGGGGCAAUGACGCAGCUUAUGAGGUUCUAACCGAGGCGCGUCUAUUGC 69498 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C :AG:C: ::: U A ::: :G:CU: G: 69499 UGGUUGAAAACUAUUuCCAAACCCC--CUCUUAGGCCUGGGUUCA-CCCCUGGCCUUCGA 69555 >,,,,,,,,,,,,<<<<__.........._>>>> 120 cAAUUUUUGGAAGcccucc..........aaggg 143 :AAUUU+UGGAAG :CUCC AAG: 69556 GAAUUUCUGGAAGGGCUCCcuuugggguaAAGCU 69589 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101415,sp|AC002131.1|ATAC2131 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence. ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGUUCCCUUCGGGGUAAAGC hit 84 : 107603 107752 (fwd) 118.02 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:A+UGAGG+ UUAACCGA:GC:CG::UAUUGC 107603 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGC 107662 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C::AG:C: :A:+UU+ :U: :G:CU::G: 107663 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUAGGCCUAAGCUUG-UCUUGGGCCUUCGA 107719 >,,,,,,,,,,,,<<<<__........._>>>> 120 cAAUUUUUGGAAGcccucc.........aaggg 143 :AAUUU+UGGAAG: :UCC AA: : 107720 GAAUUUCUGGAAGGGUUCCcuucgggguAAAGC 107752 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101505,sp|AF007270.1|ATAF7270 Arabidopsis thaliana BAC F2P16, complete sequence. ----isReversed: 1 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGAGCUCC hit 85 : 95661 95526 (rev) 119.59 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:A+UGAGG+ UUAACCGA:GC:CG::UAUUGC 15286 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGC 15345 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C::AG:C: :A:+UU+ :U: :G:CU::G: 15346 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUAGGCCUAAGCUUG-UCUUGGGCCUUCGA 15402 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 :AAUUU+UGGAAG++CUCC 15403 GAAUUUCUGGAAGAGCUCC----- 15421 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #103562,sp|AJ505691.1|ATH505691 Arabidopsis thaliana partial putative U4.1 small nuclear RNA (U4.1 snRNA gene), clone Ath-188a, 5' end incomplete ----isReversed: 0 ----hitSequence: GGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGUUCCCUUCGGGGUAAAGC hit 86 : 1 136 (fwd) 73.26 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 GGCAAU::CG:AGC:A+UGAGG+ UUAACCGA:GC:CG::UAUUGC 1 --------------GGCAAUGACGCAGCUAAUGAGGUCUUAACCGAGGCGCGUCUAUUGC 46 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C::AG:C: :A:+UU+ :U: :G:CU::G: 47 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUAGGCCUAAGCUUG-UCUUGGGCCUUCGA 103 >,,,,,,,,,,,,<<<<__........._>>>> 120 cAAUUUUUGGAAGcccucc.........aaggg 143 :AAUUU+UGGAAG: :UCC AA: : 104 GAAUUUCUGGAAGGGUUCCcuucgggguAAAGC 136 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #103563,sp|AJ505692.1|ATH505692 Arabidopsis thaliana partial putative U4.1 small nuclear RNA (U4.1 snRNA gene), clone Ath-188b, 5' end incomplete ----isReversed: 0 ----hitSequence: CAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUGGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC hit 87 : 1 135 (fwd) 69.72 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 CAAU::CG:AGC:A+UGAGG+U+UAACCGA:GC:CG::UAUUGC 1 ----------------CAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGC 44 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C:::G:C: :A:+UU+ :U: :G:C:::G: 45 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUGGGCCUAAGCUUG-UCUUGGGCCUUCGA 101 >,,,,,,,,,,,,<<<<__.........._>>>> 120 cAAUUUUUGGAAGcccucc..........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 102 GAAUUUCUGGAAGGGCUCCcuucgggguaAAGCC 135 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119574,sp|X67145.1|ATU41SN A.thaliana U4.1 snRNA gene ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUAGGCCUAAGCUUGUCUUAGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUUGGGGUAAAGCC hit 88 : 194 344 (fwd) 123.34 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:A+UGAGG+U+UAACCGA:GC:CG::UAUUGC 194 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUUCUAACCGAGGCGCGUCUAUUGC 253 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C::AG:C:::A:+UU+ :U:::G:CU::G: 254 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUAGGCCUAAGCUUG-UCUUAGGCCUUCGA 310 >,,,,,,,,,,,,<<<<__.........._>>>> 120 cAAUUUUUGGAAGcccucc..........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 311 GAAUUUCUGGAAGGGCUCCcuuugggguaAAGCC 344 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119577,sp|X67146.1|ATU42SN A.thaliana U4.2 snRNA gene ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCCUGGGCCUAAGCUUGUCUUGGGCCUUCGAGAAUUUCUGGAAGGGCUCCCUUUGGGUAAAGCC hit 89 : 296 445 (fwd) 118.16 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:A+UGAGG+ +UAACCGA:GC:CG::UAUUGC 296 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGC 355 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C:::G:C: :A:+UU+ :U: :G:C:::G: 356 UGGUUGAAAACUAUUuCCAAACCCC--CUCCUGGGCCUAAGCUUG-UCUUGGGCCUUCGA 412 >,,,,,,,,,,,,<<<<__........._>>>> 120 cAAUUUUUGGAAGcccucc.........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 413 GAAUUUCUGGAAGGGCUCCcuuuggguaAAGCC 445 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119585,sp|X67147.1|ATU43SN A.thaliana U4.3 snRNA pseudogene ----isReversed: 0 ----hitSequence: AUCGUUGCGCUUGGACAAUGACACAUCUAAUGAGGUUCUAACCGAGAUGCGUCUAUGCUGGUUGAAAACUAUUUCUAAACCCCCUCCUAACCCUAAGUUUGUCUUGGGCCUUGGAGAAUUUUUGUAUUUCCUUUGGGU hit 90 : 239 376 (fwd) 71.00 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUC UUGCGC + GG CAAU::C::A :A+UGAGG+U+UAACCGA: ::G::UA UGC 239 AUCGUUGCGC-UUGGACAAUGACACAUCUAAUGAGGUUCUAACCGAGAUGCGUCUA-UGC 296 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU C :AACC+C ::C::A: C: :A: UU+ :U: :G :U::G: 297 UGGUUGAAAACUAUUuCUAAACCCC--CUCCUAACCCUAAGUUUG-UCUUGGGCCUUGGA 353 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 :AAUUUUUG A :CC:+ :GG: 354 GAAUUUUUGUAUUUCCUUU-GGGU 376 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #158266,sp|AY198655.1|AY198655 Arabidopsis thaliana sequence flanking Ds3 end of Ds-EnhancerTrap insertion from line ET2049. ----isReversed: 1 ----hitSequence: AGCUAAUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCAUGGGCCUGGGCUUGACCUAUGGCCUUUGAGAAUUUCUGGAAGGGCUCCCUUCGGGGUAAAGCC hit 91 : 478 352 (rev) 30.14 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CU AAU:: GUA C:A ACCGA:GCGC ::UAUUGC 1 AGCU-------------AAUGAGGUA-CUA-----------ACCGAGGCGCGUCUAUUGC 35 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C:::G:C: ::+UU+ :: :G:C:::G: 36 UGGUUGAAAACUAUUuCCAAACCCC--CUCAUGGGCCUGGGCUUGACCUAUGGCCUUUGA 93 >,,,,,,,,,,,,<<<<__.........._>>>> 120 cAAUUUUUGGAAGcccucc..........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 94 GAAUUUCUGGAAGGGCUCCcuucgggguaAAGCC 127 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #182775,sp|X71485.1|CRRNAU4A C.reinhardtii U4 snRNA ----isReversed: 0 ----hitSequence: AUCCUUGCGCUUGGGGCAGUGUCGCAGACUGUGAGGUCUAACCGAGUCGCGACAGUGCCAGUUGAAAACUUAUUCCAUCCCCGUCGGUCGUCGUUCUUCGGAACGCUUCCGCAAUUUCUGUCGGGCCUUUUGGC hit 92 : 1 134 (fwd) 58.79 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUC UUGCGCU+GGGGCA:U:UCG:AG:C GUGAGG+ U+ ACCGAG:C:CGA: A:UGC 1 AUCCUUGCGCUUGGGGCAGUGUCGCAGACUGUGAGGUCUA-ACCGAGUCGCGAC-AGUGC 58 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 AG UGAAAACU+ U CCA CC+C G: ::: +:: ++UU + ::+ ::: :C 59 CAGUUGAAAACUUAUUCCAUCCCC--GUC-GGUCGUCGUUCUU---CGGAACGCUUCCGC 112 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUU+UG G:CC + GG: 113 AAUUUCUGUCGGGCCUUU-UGGC 134 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #202810,sp|X15931.1|PSSNU4A Pea U4 snRNA (clone pPSUN4.1) ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUACUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUGGGCCUGGGCUUUGCUUGGGCCUUUGAGAAUUUCUGGAAGGGCUCCCUCUGGGUAAAGCC hit 93 : 1 150 (fwd) 115.06 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:AGUGAGG+ +UAACCGA:GC:CG::UAUUGC 1 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUACUAACCGAGGCGCGUCUAUUGC 60 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::C :+G:+:::::G U U :::::+:C+:UG: 61 UGGUUGAAAACUAUUuCCAAACCCC--CUC-UUGGGCCUGGGCUUUGCUUGGGCCUUUGA 117 >,,,,,,,,,,,,<<<<__........._>>>> 120 cAAUUUUUGGAAGcccucc.........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 118 GAAUUUCUGGAAGGGCUCCcucuggguaAAGCC 150 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #202811,sp|X15932.1|PSSNU4B Pea U4 snRNA (clone pPSU4.2) ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUUCUAACCGAGGUGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUAGGCUUGAGGCAACUCAAGCCUUUGAGAAUUUUUGGAAGGACUCCCUUAGGGUAAAGUC hit 94 : 1 149 (fwd) 126.33 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:A C:AGUGAGG+U+UAACCGA:G :CG::UAUUGC 1 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUUCUAACCGAGGUGCGUCUAUUGC 60 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::CU:AG:C:::A:G +A :U:::G:CU:UG: 61 UGGUUGAAAACUAUUuCCAAACCCC--CUCUUAGGCUUGAGGCAA--CUCAAGCCUUUGA 116 >,,,,,,,,,,,,<<<<__........._>>>> 120 cAAUUUUUGGAAGcccucc.........aaggg 143 :AAUUUUUGGAAG::CUCC AAG:: 117 GAAUUUUUGGAAGGACUCCcuuaggguaAAGUC 149 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #202812,sp|X15933.1|PSSNU4C Pea U4 snRNA (clone pPSU4.3) ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCCAAACCCCCUCUUAGGCUUGAGGUAACUCAAGCCUUUGAGAAUUUCUGGAAGGGCUCCCUUAGGGUAAAGUC hit 95 : 1 149 (fwd) 128.35 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CG:AGC:AGUGAGG+U+UAACCGA:GC:CG::UAUUGC 1 AUCUUUGCGCUUGGGGCAAUGACGCAGCUAGUGAGGUUCUAACCGAGGCGCGUCUAUUGC 60 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU CC:AACC+C ::CU:AG:C:::A:GU+A :U:::G:CU:UG: 61 UGGUUGAAAACUAUUuCCAAACCCC--CUCUUAGGCUUGAGGUAA--CUCAAGCCUUUGA 116 >,,,,,,,,,,,,<<<<__........._>>>> 120 cAAUUUUUGGAAGcccucc.........aaggg 143 :AAUUU+UGGAAG: CUCC AAG : 117 GAAUUUCUGGAAGGGCUCCcuuaggguaAAGUC 149 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #212198,sp|X07112.1|VFU4A Vicia faba U4A small nuclear RNA ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGUAGCUAGUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUGCCAAACCCCUCUUAGGCUUGGGCUUGGGUUCAAGCCUUUGAGAAUUUCUGGAAGGACUCCCUUUGGGGUAAAGUC hit 96 : 1 152 (fwd) 124.22 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CGUAGC:AGUGAGG+U+UAACCGA:GCGCG::UAUUGC 1 AUCUUUGCGCUUGGGGCAAUGACGUAGCUAGUGAGGUUCUAACCGAGGCGCGUCUAUUGC 60 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>> 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcuuug 118 U+GUU:AAAACUAUU CC:AACC+ ::CU:AG:C:::::+UU+ :::::G:CU:UG 61 UGGUUGAAAACUAUUugCCAAACCC---CUCUUAGGCUUGGGCUUGGGUUCAAGCCUUUG 117 >>,,,,,,,,,,,,<<<<__.........._>>>> 119 gcAAUUUUUGGAAGcccucc..........aaggg 143 ::AAUUU+UGGAAG::CUCC AAG:: 118 AGAAUUUCUGGAAGGACUCCcuuugggguaAAGUC 152 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #212199,sp|X07113.1|VFU4B Vicia faba U4B small nuclear RNA ----isReversed: 0 ----hitSequence: AUCUUUGCGCUUGGGGCAAUGACGUAGCUAGUGAGGUUCUAACCGAGGCGCGUCUAUUGCUGGUUGAAAACUAUUUCUAAACCCCCUCUUAGGCUUGAGUUUAACUCAAGCCUUUGAGAAUUUCUGGAAGGACUCCUUCGGGGUAAAGUC hit 97 : 1 150 (fwd) 125.03 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AUCUUUGCGCU+GGGGCAAU::CGUAGC:AGUGAGG+U+UAACCGA:GCGCG::UAUUGC 1 AUCUUUGCGCUUGGGGCAAUGACGUAGCUAGUGAGGUUCUAACCGAGGCGCGUCUAUUGC 60 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+GUU:AAAACUAUU C :AACC+C ::CU:AG:C:::A: UUA A:U:::G:CU:UG: 61 UGGUUGAAAACUAUUuCUAAACCCC--CUCUUAGGCUUGAGUUUA-ACUCAAGCCUUUGA 117 >,,,,,,,,,,,,<<<<__........._>>>> 120 cAAUUUUUGGAAGcccucc.........aaggg 143 :AAUUU+UGGAAG::CUCC AAG:: 118 GAAUUUCUGGAAGGACUCCuucgggguaAAGUC 150 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1527,sp|AC131886.5|AC131886 Rattus norvegicus 4 BAC CH230-53A1 (Children's Hospital Oakland Research Institute) complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCUAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCUAAAGAGAAAUUAAGUACCUCAUCUAAGACUCCUUUAGAUGCAAUAGAGCAUAGUUUGUAAGCUCCACAAAU hit 98 : 52109 52256 (fwd) 60.30 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCC +UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 52109 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCUAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 52166 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<____......__>>>>>> 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguua......uauugucg 112 UA:UU:AAAACU+UU C :AA:+G ::: A : C+:C U+U+A U U G:+G 52167 UAAUUGAAAACUUUUccCUAAAGAGAAAUUA-AGUACCUCAUCUAAgacuccUUUAGAUG 52225 >>>>>>>>,,,.,,,,,,,,,<<<<___>>>> 113 gcuuuggcAAU.UUUUGGAAGcccuccaaggg 143 : U+::: AU UUUG AAG : C : 52226 CAAUAGAGCAUaGUUUGUAAGCUCCAC-AAAU 52256 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #13732,sp|K00782.1|RN4A Rat U4 small nuclear RNA. ----isReversed: 0 ----hitSequence: AACUUUGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGUCUCUACGGAGA hit 99 : 2 136 (fwd) 108.43 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 2 AACUUUGC---AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 57 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG++AUAU:GUCGGC::UGGC 58 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGAAAUAUAGUCGGCAUUGGC 116 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG :C::++ +::G: 117 AAUUUUUG----UCUCUAcGGAGA 136 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21450,sp|M26115.1|RNUGPSA Rat U4-1 small nuclear RNA pseudogene. ----isReversed: 0 ----hitSequence: AGACUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAACAUAAUAGGUUACACAGACAAUUAAU hit 100 : 29 122 (fwd) 21.53 bits ::.:::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>, 1 Au.CUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 A+ CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UG 29 AGaCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUG 86 ,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 60 CUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 CUA:UU:AAA C :AA:+G G::: + ::: 87 CUAAUUGAAA------CAUAAUAG---GUUA-----------CAC------------AGA 114 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 CAAUU AA U 115 CAAUU-----AA----U------- 122 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21451,sp|M26116.1|RNUGPSB Rat U4-2 small nuclear RNA pseudogene. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUAAAGAAAAGUAGUCAAUAGAAU hit 101 : 15 107 (fwd) 35.38 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 15 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 72 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU:AAAACU+ :AA: G U++ C 73 UAAUUGAAAACUUAAAGAAAA-----G--------------UAG--------------UC 99 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAU AG+ +U 100 AAU-------AGA-AU------- 107 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21452,sp|M26117.1|RNUGPSC Rat U4-3 small nuclear RNA pseudogene. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAGUCAACAUUAGGGCUGGAGAGAUA hit 102 : 1 91 (fwd) 21.74 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 1 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 58 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU +AA: G:C: A+ + UUA :G:C 59 UAAUU------------GAAA-----GUCA-AC-A------UUA------------GGGC 81 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 UGGA G+++U A 82 ------UGGA-GAGAU--A---- 91 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21453,sp|M26118.1|RNUGPSD Rat U4-4 small nuclear RNA pseudogene. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUUCAAGGUGCCAUUACUGCUAAUUGAAAACUAUUAUUAUCAGAGAAAACAGGU hit 103 : 31 122 (fwd) 15.55 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAU GUA CCA+UGAGG+UU+ + C AGG GC AUUA:UGC 31 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UUCAAGGUGCCAUUACUGC 88 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U :AAAACUAUU : A: : + A : 89 UAAUUGAAAACUAUUA-UUAU-----C--------------AGA---------------G 113 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA AA ++ U 114 AA-------AACAGGU------- 122 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21532,sp|K00477.1|RNURU4A Rat U4a small nuclear RNA (snRNA). ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 104 : 2 142 (fwd) 129.24 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21533,sp|K00478.1|RNURU4B Rat U4b small nuclear RNA (snRNA). ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 105 : 2 142 (fwd) 129.24 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #21534,sp|K00479.1|RNURU4C Rat U4c small nuclear RNA (snRNA). ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 106 : 2 142 (fwd) 130.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC A:GACGAC:UG++AUAU:GUCGGC:UUGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-AUGACGACUUGAAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #42594,sp|M14136.1|GGU4BX Chicken U4X and U4B small nuclear RNA genes. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUAAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 107 : 1141 1281 (fwd) 127.81 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+U + +CCGAGGCGCGAUUA:UGC 1141 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUAA-UCCGAGGCGCGAUUAUUGC 1198 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC A:GACGAC:UG++AUAU:GUCGGC:UUGGC 1199 UAAUUGAAAACUUUUCCCAAUACCCCGCC-AUGACGACUUGAAAUAUAGUCGGCAUUGGC 1257 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 1258 AAUUUUUGACAGUCUCUAcGGAGA 1281 ----endhit ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAGUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGAGAGCCUCCCCGGAGG hit 108 : 535 675 (fwd) 135.02 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 535 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 592 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC A:GACGAC:UG++AUAU:GUCGGC:UUGGC 593 UAGUUGAAAACUUUUCCCAAUACCCCGCC-AUGACGACUUGAAAUAUAGUCGGCAUUGGC 651 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AGCC::CC +::GG 652 AAUUUUUGAGAGCCUCCCcGGAGG 675 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #42713,sp|K00474.1|GGURU4A Chicken U4a small nuclear RNA (snRNA). ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUAAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 109 : 2 142 (fwd) 126.16 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+U + +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUAA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #42714,sp|K00475.1|GGURU4B Chicken U4b small nuclear RNA (snRNA). ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUAAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 110 : 2 142 (fwd) 126.16 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+U + +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUAA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #42715,sp|K00476.1|GGURU4C Chicken U4c small nuclear RNA (snRNA). ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUAAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 111 : 2 142 (fwd) 127.81 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+U + +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUAA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC A:GACGAC:UG++AUAU:GUCGGC:UUGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-AUGACGACUUGAAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9474,sp|AC002429.1|AC002429 Homo sapiens BAC clone GS1-200K5 from 7, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCACAGCAAAUGAGGUUUAUCCUAGGCGUGAUUAUAGCUAAUUGAAGACUUUUCCCAAUAUCCCGCUGUGAGGACUUACAAUACAGUCGGCAUUAACAUUUUUUGGCAGUCUUUAUGGAGA hit 112 : 138105 138245 (fwd) 88.09 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGC :UAUC::AGC:A+UGAGG+UU+ +CC A:GC::GAUUA: GC 138105 AGCUUUGUGC-AGUGGCAGUAUCACAGCAAAUGAGGUUUA-UCCUAGGCGUGAUUAUAGC 138162 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAA ACU+UUCCCAA:+ CCCG : ::GA+GAC:+ +AUA+:GUC+GC::U: C 138163 UAAUUGAAGACUUUUCCCAAUAUCCCGCU-GUGAGGACUUACAAUACAGUCGGCAUUAAC 138221 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 A UUUUUGG AG:C::++ +::G: 138222 AUUUUUUGGCAGUCUUUAuGGAGA 138245 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9651,sp|AC003108.1|AC003108 Human Chromosome 16 BAC clone CIT987SK-327O24, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUACCGUAGCCAAUGAGAUUUAUCCGAGACGCGAUUAUUGCUAAUUGGAAAUUUUCCCAAUACCCCACCGUGAUGACUUGAAAUAUAAUCAGCGCUGGCAAUUUUUGACAGUCUCUACGGAGA hit 113 : 5228 5367 (fwd) 85.56 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UA CGUAG CA+UGAG +UU+ +CCGAG CGCG UUA:UGC 5228 AGCUUUGCAC-AGUGGCAGUACCGUAGCCAAUGAGAUUUA-UCCGAGACGCGAUUAUUGC 5285 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUG AAA U+UUCCCAA:++CCC:CC : GA:GA :UG++AUAU: UC:GC :UGG: 5286 UAAUUGGAAA-UUUUCCCAAUACCCCACC-GUGAUGACUUGAAAUAUAAUCAGCGCUGGC 5343 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 5344 AAUUUUUGACAGUCUCUAcGGAGA 5367 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9854,sp|AC004167.1|AC004167 Homo sapiens chromosome 17, clone HRPC1096F1, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGUGCUAUUACUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUAAUGACUUGAAAUAUAGUUGGCAUUCGCAAUUUUUGACAGUCUCUAUGGAGA hit 114 : 76205 76065 (rev) 108.10 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU GUA CCA+UGAGG+UU+ +CCGAGG GC AUUA:UGC 48672 AGCUUUGUGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGUGCUAUUACUGC 48729 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGC A::A: AC:UG++AUAU:GU :G::UU GC 48730 UAAUUGAAAACUUUUCCCAAUACCCCGCC-AUAAUGACUUGAAAUAUAGUUGGCAUUCGC 48788 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 48789 AAUUUUUGACAGUCUCUAuGGAGA 48812 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9931,sp|AC004263.1|AC004263 Homo sapiens PAC clone 278C19 from 12q, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCACUGGCAAUUUUUGACAGUCUCUACGGAGA hit 115 : 100956 100816 (rev) 126.10 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+ U+ +CCGAGGCGCGAUUA:UGC 5966 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUCUA-UCCGAGGCGCGAUUAUUGC 6023 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 6024 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCACUGGC 6082 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 6083 AAUUUUUGACAGUCUCUAcGGAGA 6106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9931,sp|AC004263.1|AC004263 Homo sapiens PAC clone 278C19 from 12q, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 116 : 99622 99482 (rev) 130.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 7300 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 7357 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC A:GACGAC:UG++AUAU:GUCGGC:UUGGC 7358 UAAUUGAAAACUUUUCCCAAUACCCCGCC-AUGACGACUUGAAAUAUAGUCGGCAUUGGC 7416 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 7417 AAUUUUUGACAGUCUCUAcGGAGA 7440 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #106,sp|AC004662.1|AC004662 Homo sapiens chromosome 1, clone hRPC.842_A_23, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAGUGAGGUUUAUCCGAGGCGCAAUUAUUGCUAAUUGAAAUUAUGAUUUUCCUACUUUAUUUAGUAUUGGUAGAUCCUUCAUUAUUGAACUCAGACAUCC hit 117 : 19192 19066 (rev) 43.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAU GUAGCCAGUGAGG+UU+ +CCGAGGCGC AUUA:UGC 100712 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAGUGAGGUUUA-UCCGAGGCGCAAUUAUUGC 100769 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U::AAA UU ::A: : ::::: C :AU U++UAUU: +::::: : 100770 UAAUUGAAA----UUA-UGAU-----UUUCCUA-CUUUAUUUAGUAUUGGU-AGAUCCUU 100817 ,,,,,,,,,,...,,<<<<___>>>> 121 AAUUUUUGGA...AGcccuccaaggg 143 AUU UUG+A AG+C+UCC 100818 CAUUAUUGAAcucAGACAUCC----- 100838 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #440,sp|AC005064.3|AC005064 Homo sapiens clone CTB-107G13, complete sequence. ----isReversed: 1 ----hitSequence: AACUUUGUGCAAUGGCAGUAUCAUAGCCAGUGGGAUUUAUCCAAAGCACAAUUAUUGCUAGAUGAAAAGAUCAUUGUAUUUCUACAUACUAGCAAUGAACAAAUGUUUUUUAAAACUCUUC hit 118 : 67139 67019 (rev) 16.12 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUG GC A GGCA:UAU :+AGC AGUG GG UUUA+CC A GC+: AUUA:UGC 52346 AACUUUGUGC-AAUGGCAGUAUCAUAGCCAGUG-GGAUUUAUCCAAAGCACAAUUAUUGC 52403 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: UGAAAA AU CA : G:: ::: C:A +UA U:G+::: ::C 52404 UAGAUGAAAAG-AU---CAUU-----GUA-UUU-CUAC---AUA----CUAGCAAUGAAC 52445 ,,...,,,,,,,,,,<<<<___>>>> 121 AA...UUUUUGGAAGcccuccaaggg 143 AA UUUUU +AA C CU+C 52446 AAaugUUUUUUAAAACUCUUC----- 52466 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #870,sp|AC005726.1|AC005726 Homo sapiens chromosome 17, clone hRPK.192_H_23, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGGGCAGUGGCAGUAUCAUAGCCAGUAAGGUUUAUCCGAGGCACAAUUAUUACUGAUUAUUGCCAAUUGAAACAGUGAGUUAUGAUCAUGCCACUGCACUCCAGCUUGGG hit 119 : 55404 55518 (fwd) 13.57 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU :+AGCCAGU AGG+UU+ +CCGAGGC+: AUUA:U C 55404 AGCUUUGGGC-AGUGGCAGUAUCAUAGCCAGUAAGGUUUA-UCCGAGGCACAAUUAUUAC 55461 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U+ A UAUU CC A+ G:: :: + : A GUUA U : ::U:: 55462 UG-------AUUAUUgCCAAUU-----GAA-AC--AGUGA-GUUA---UGAU---CAUGC 55499 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 CA +UG A CC::C ::GG 55500 CA----CUGCACUCCAGCU-UGGG 55518 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1274,sp|AC006362.2|AC006362 Homo sapiens PAC clone RP5-1173P7 from 7, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGUGGCAGUAAGGUAGCCAAUGAGGUUUAUUUGAGGCGCAAUUAUUGCUAAUUGAAACAGAUUCGUAGUGCACAGAGAGUGGGAUUUGUAGUUAACUACAUCUAGAUUUUUAAAUCCCCACC hit 120 : 6318 6449 (fwd) 36.54 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UA GUAGCCA+UGAGG+UU+ + +GAGGCGC UUA:UGC 6318 AGCUUUGUGC-AGUGGCAGUAAGGUAGCCAAUGAGGUUUA-UUUGAGGCGCAAUUAUUGC 6375 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: U:AAA AUUC :A : GC C: : A :: G : UGU++ U : C :: U : : 6376 UAAUUGAAACAGAUUCGUAGU-GCACAGAGAGUGGGAUUUGUAG--UUAACUACAUCU-A 6431 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AUUUUU +A CCC+CC 6432 GAUUUUUAAAUCCCCACC----- 6449 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1536,sp|AC007097.4|AC007097 Homo sapiens BAC clone RP11-332E22 from 7q35-q36, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGAACACUGGCAGUAUCGUAGCCAGUCAGGUUUAUCUGAGGUGUGAUUACUGCUGAUGGAAAACUUUUCCUGAUACCCUGCCAUGAUGACUUGUAAUGCAGUGAGCACUGGCAAUUUUUGACAGUCUCCAUGGAGA hit 121 : 24607 24467 (rev) 88.09 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C A GGCA:UAUC UA CCAGU AGG+UU+ +C+GAGG G GAUUA:UGC 118224 AGCUUUGAAC-ACUGGCAGUAUCGUAGCCAGUCAGGUUUA-UCUGAGGUGUGAUUACUGC 118281 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:U::AAAACU+UUCC::A:++CC GCC :GA: AC:+GU+AU +:GU :GC: UGGC 118282 UGAUGGAAAACUUUUCCUGAUACCCUGCC-AUGAUGACUUGUAAUGCAGUGAGCACUGGC 118340 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::C+ +::G: 118341 AAUUUUUGACAGUCUCCAuGGAGA 118364 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1797,sp|AC007570.23|AC007570 Homo sapiens 12 BAC RP11-968O1 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AUUGUGCAGUGUCAGUGUUGUCGCCAGUGAGGUUUACCCAAGAUGUGAUUAUUGCUGAUUGAAAACUUUUCCCACUACCCCACCAUGAUGACUUGAAAUAUAGUCAACAUUGGCAGUUUUUGACAGUCUUUAUGGAGA hit 122 : 38056 38193 (fwd) 64.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A UUG GC AG G CA:U U U CAGUGAGG+UU+ CC AG G A UA:UGC 38056 A---UUGUGC-AGUGUCAGUGUUGUCGCCAGUGAGGUUUA-CCCAAGAUGUGAUUAUUGC 38110 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+: UGAAAACU+UUCCCA :++CCC:CC A:G :GAC:UG++AUAU:GUC: C:UUGG: 38111 UGAUUGAAAACUUUUCCCACUACCCCACC-AUGAUGACUUGAAAUAUAGUCAACAUUGGC 38169 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 A UUUUUG+ AG:C::++ +::G: 38170 AGUUUUUGACAGUCUUUAuGGAGA 38193 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1987,sp|AC008040.7|AC008040 Homo sapiens 3 BAC RP11-379K17 (Roswell Park Cancer Institue Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCCAUUUCAUAGCCAGUGAAGUUUAUCUGAGGCACUUGCUAAUUGAAAACUUUUCUCAAUACCCUGCCAUGAUGAAAUAUGGUUGGCACUGGCAAUUUUUGAGACUCUAUGGAG hit 123 : 46169 46042 (rev) 60.03 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGC:AU UC:+AGCCAGUGA G+UU+ +C+GAGGC+: U:GC 158749 AGCUUUGUGC-AGUGGCCAUUUCAUAGCCAGUGAAGUUUA-UCUGAGGCAC-----UUGC 158801 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUC CAA:++CC GCC :GA: A: +UAU :U :GC: UGGC 158802 UAAUUGAAAACUUUUCUCAAUACCCUGCC-AUGAUGAA---AUAUG--GUUGGCACUGGC 158855 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ A C:C: :G:G 158856 AAUUUUUGAGA-CUCUAU-GGAG 158876 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1994,sp|AC008055.7|AC008055 Homo sapiens 12 BAC RP11-718L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCAGUAUGGUAGCCCAUGAGGUUUAUCCGAGGCCCGAUUAUGGCUAGUUGAAAAUGUUUCCCAAUACCCUGCCAUGAUGAUUUAAAAUAUAGUCGGCAUGGGCAAUUUUUGCAGUCUGUAUUGA hit 124 : 186865 186728 (rev) 85.48 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGC :UAU G AGCC +UGAGG+UU+ +CCGAGGC C AUUA: GC 9889 AGCUUUGCAC-AGUGGCAGUAUGGUAGCCCAUGAGGUUUA-UCCGAGGCCCGAUUAUGGC 9946 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAA +UUCCCAA:++CC GCC A:GA:GA::U ++AUAU::UC:GC:U GGC 9947 UAGUUGAAAAUGUUUCCCAAUACCCUGCC-AUGAUGAUUUAAAAUAUAGUCGGCAUGGGC 10005 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG A G:C::++ ::G: 10006 AAUUUUUGCA-GUCUGUA-UUGA 10026 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2144,sp|AC008438.6|AC008438 Homo sapiens chromosome 5 clone CTC-329D1, complete sequence. ----isReversed: 1 ----hitSequence: AGAUUUGCUCAGUGGCAGUAUCAUAGCCAAAGGCAUCAUUAUUGCUAAUUGAAAACUUUUCCCAAUAACCUGCCAUGGCCUUGAAAUAUAGUAAGCAUUGGGAAUUUUGAGUCUCUAUGGA hit 125 : 55843 55723 (rev) 34.76 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUGC C AG GGCA:UAU :+AGCCA A AGGC+: AUUA:UGC 29876 AGAUUUGCUC-AGUGGCAGUAUCAUAGCCA----------A----AGGCAUCAUUAUUGC 29920 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:+ CC CC A:G C:UG++AUAU:G GC:UUGG 29921 UAAUUGAAAACUUUUCCCAAUAACCUGCC-AUG--GCCUUGAAAUAUAGUAAGCAUUGGG 29977 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUU UG AG:C: ++ :G: 29978 AAUUU-UG--AGUCUCUA-UGGA 29996 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2547,sp|AC008949.9|AC008949 Homo sapiens chromosome 5 clone CTD-2335O24, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUAUGCAGCAGCAACAUCAUAGACAAUGGGGUUUAUCUGAAGUGCGAUUAUUGCUAAUUGAGAAAAAAAAUAAAGGCUGACUGCCAUCUAUAAAACAAGUCAUCGGCCCACCUGAUUGAUGAAGUGCCCCCUCCACUGGGAA hit 126 : 154298 154443 (fwd) 11.36 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUU GC AG GCAA AUC:UA : A+UG GG+UU+ +C+GA : G:GAUUAUUGC 154298 AGCUUUAUGC-AGCAGCAACAUCAUAGACAAUGGGGUUUA-UCUGAAGUGCGAUUAUUGC 154355 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____.....__>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua.....uauugucggcu 115 UA:UU:A AA A :AA: G : + ::::C: ::+ U+A +:: :G::: 154356 UAAUUGAGAAAAAAAAUAAAG-G---CUG-ACUGCCAUCUAUAAaacaaGUCAUCGGCCC 154410 >>>>>,,,,,,,,,,,,<<<<__......._>>>> 116 uuggcAAUUUUUGGAAGcccucc.......aaggg 143 : + :A U U GAAG: C:CC +:G : 154411 ACCUGAUUGAU--GAAGUGCCCCcuccacuGGGAA 154443 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2563,sp|AC008966.9|AC008966 Homo sapiens chromosome 5 clone CTD-2366F13, complete sequence. ----isReversed: 1 ----hitSequence: AGUUUUGCAGUGGCAGUGUGAUGACCAAUGAGGUUUAUCUGAGGUGCGAUUAUUGCUAAUUGAAGCAGUGCCCUGGAGGUACUAGAAUUCCUUAUCAGUUUCAUACAAUUUCAGGGCUUGAUUUUUUA hit 127 : 141722 141595 (rev) 12.48 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUGC AG GGCA:U U :U :CCA+UGAGG+UU+ +C+GAGG:G: A UA:UGC 33110 AGUUUUGC---AGUGGCAGUGUGAUGACCAAUGAGGUUUA-UCUGAGGUGCGAUUAUUGC 33165 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 UA: GA A A U CCC :+G G:: :+ + A::++ U +::U +:+:: 33166 UAAUUGA--AGCAGUgCCCUGGAG---GUA-CU--AGAAUUCCUUAUCAGUU---UCAUA 33214 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 CAAUUU+ GG : : + : : 33215 CAAUUUCAGGGCUUGAUUU-UUUA 33237 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2570,sp|AC008973.6|AC008973 Homo sapiens chromosome 5 clone CTD-2380L12, complete sequence. ----isReversed: 1 ----hitSequence: AGUUUUGCAGUGGCAGUGUGAUGACCAAUGAGGUUUAUCUGAGGUGCGAUUAUUGCUAAUUGAAGCAGUGCCCUGGAGGUACUAGAAUUCCUUAUCAGUUUCAUACAAUUUCAGGGCUUGAUUUUUUA hit 128 : 88822 88695 (rev) 12.48 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUGC AG GGCA:U U :U :CCA+UGAGG+UU+ +C+GAGG:G: A UA:UGC 28211 AGUUUUGC---AGUGGCAGUGUGAUGACCAAUGAGGUUUA-UCUGAGGUGCGAUUAUUGC 28266 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 UA: GA A A U CCC :+G G:: :+ + A::++ U +::U +:+:: 28267 UAAUUGA--AGCAGUgCCCUGGAG---GUA-CU--AGAAUUCCUUAUCAGUU---UCAUA 28315 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 CAAUUU+ GG : : + : : 28316 CAAUUUCAGGGCUUGAUUU-UUUA 28338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2702,sp|AC009162.11|AC009162 Homo sapiens chromosome 16 clone RP11-76H6, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCUUAACCAAUGAGGUUUAUCUGAGGCACAAUUAUUGCUAAUUGAAAACUUUUCCCAACACUGCCAUAAUGACUUGAGCUAUACUAGGCAUUGGCAAUUUAAUUUUUGACAGUCUCUACGGAGA hit 129 : 7428 7285 (rev) 77.93 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU :+A CCA+UGAGG+UU+ +C+GAGG +: AUUA:UGC 174223 AGCUUUGUGC-AGUGGCAGUAUCUUAACCAAUGAGGUUUA-UCUGAGGCACAAUUAUUGC 174280 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++ GCC A::A: A :UG+ UAU: U :G::UUGGC 174281 UAAUUGAAAACUUUUCCCAACACU--GCC-AUAAUGACUUGAGCUAUACUAGGCAUUGGC 174337 ,,,,.....,,,,,,,,<<<<__._>>>> 121 AAUU.....UUUGGAAGcccucc.aaggg 143 AAUU UUUG+ AG:C::++ +::G: 174338 AAUUuaauuUUUGACAGUCUCUAcGGAGA 174366 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2822,sp|AC009413.2|AC009413 Homo sapiens BAC clone RP11-459K11 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGAGUGGUGCUACCACCGUCGCCUCUGAGGUUUAACCGAGGCGCGAUUGUUGCUGAUUGAAAACAUGAGACCUAAUUCCAGCCCCCUCCUCCCUCCAGUGGCAGGCGGAGGCUCCACAUCCAUUU hit 130 : 20206 20077 (rev) 13.68 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG G G G A: A CGU GCC UGAGG+UU+ ACCGAGGCGCG UU :UGC 154207 AGCUUUGAGU-GGUGCUACCACCGUCGCCUCUGAGGUUUA-ACCGAGGCGCGAUUGUUGC 154264 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>> 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcuuug 118 U+:UU:AAAAC + CC:AA: +C GCC ::: C: C:U+ ++ U:G :G ::: G 154265 UGAUUGAAAACAUGAgaCCUAAUUCCA-GCCCCCUCCUCCCUCCAG--UGGCAGGCGGAG 154321 >>,,,,,,,,,,,,<<<<___>>>> 119 gcAAUUUUUGGAAGcccuccaaggg 143 GC U + A CC+U+ 154322 GC-----UCCACAUCCAUUU----- 154336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3036,sp|AC009995.9|AC009995 Homo sapiens chromosome 8, clone RP11-373H15, complete sequence. ----isReversed: 0 ----hitSequence: UUUGCACACUGGUCAUGUCAUAGCCAGUAAGGUUUAUCUGAGGUGUGAUUAUUGCUAAUUGACAGCUUUUCUAGAAGAGGAUUCCUUUCUUUUUGUCUCCUCAGGCAACUUUAUCGCAAAUAAUG hit 131 : 153632 153756 (fwd) 18.99 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 UUUGC C A GG :AU UC:UA CCAGU AGG+UU+ +C+GAGG G:GA UAU:GC 153632 ---UUUGCAC-ACUGGUCAUGUCAUAGCCAGUAAGGUUUA-UCUGAGGUGUGAUUAUUGC 153686 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U::A A CU+UUC ::A: G:+ :A: :+ : U+UU U : +:+:U:++:C 153687 UAAUUGACAGCUUUUCUAGAA-----GAG-GAU-UCCUUUCUUU--UUGUCUCCUCAGGC 153737 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA UUU + GC:++++A :G 153738 AACUUU--AUCGCAAAUAA--UG 153756 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3463,sp|AC010733.8|AC010733 Homo sapiens BAC clone RP11-373L24 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAUUGGCAGUAUAGCCAAGUGAGGUUUAUCUUAGGAGUGGUUAUUGUUAAUUGAAAACUUUUUCCUAAUAUCCUGCUGUCAUGACUUGCAGUAUAGUCAGCAUUGGCAAUUUUUGACAGUCUUUUUGGAGA hit 132 : 64758 64897 (fwd) 66.13 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC A GGCA:UA : C:AGUGAGG+UU+ +C+ A:G : UUA:UG 64758 AGCUUUGUGC-AUUGGCAGUAUAGC--CAAGUGAGGUUUA-UCUUAGGAGUGGUUAUUGU 64813 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 UA:UU:AAAACU+UU CC:AA:+ CC GC: :: A:GAC:UG ++UAU:GUC:G ::U:G 64814 UAAUUGAAAACUUUUuCCUAAUAUCCUGCU-GUCAUGACUUGCAGUAUAGUCAGCAUUGG 64872 >,,,,,,,,,,,,<<<<__._>>>> 120 cAAUUUUUGGAAGcccucc.aaggg 143 CAAUUUUUG+ AG:C::+ +::G: 64873 CAAUUUUUGACAGUCUUUUuGGAGA 64897 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3548,sp|AC010976.5|AC010976 Homo sapiens BAC clone RP11-286H15 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUACUCAAGGAGUGAUUAUUGCUAAUUGAAAAACUGAUGAACAUAUGAAGUGCAUGUCUGUAGCUUAAUAGUACAAAGUCAGCCAACUUGAGACCUUGGCUCAGGUA hit 133 : 22903 23045 (fwd) 38.27 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUC:UA CCA+UGAGG+UU+ C AGG G:GAUUA:UGC 22903 AGCUUUGCGC-AGUGGCAGUAUCAUAGCCAAUGAGGUUUA-CUCAAGGAGUGAUUAUUGC 22960 ,,<<<<._________..__....>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>> 61 UAgUug.AAAACUAUU..CC....caAccgCCCgccuaagacgacauguuauauugucgg 113 UA:UU AAAACU U C AA: GC G:C+:+:: : :A U++ U: : : 22961 UAAUUGaAAAACUGAUgaACauauGAAGUGCAUGUCUGUAGCUUAA--UAG---UACAAA 23015 >>>>>>>,,,,,,,,,,,,<<<<___>>>> 114 cuuuggcAAUUUUUGGAAGcccuccaaggg 143 :+:+G:CAA UU G+ : :+CA: : 23016 GUCAGCCAACUUGAGACCUUGGCUCAGGUA 23045 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3566,sp|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCAGUAUUGUAGCCGAUGAGGUUUAUCCAAGGCAUGAUUAUUGCUAAUUGAAAUUCAAAAAAAGCUGGGGGGAGAAAAAGGCCAGCAUGAAGAAAAAGAGGAAGGUACAGAAUGAUUGGAAUUGGCAGGUUAU hit 134 : 29429 29283 (rev) 25.53 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAU +AGCC +UGAGG+UU+ +CC AGGC+ AUUA:UGC 188187 AGCUUUGCAC-AGUGGCAGUAUUGUAGCCGAUGAGGUUUA-UCCAAGGCAUGAUUAUUGC 188244 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____................ 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua................ 104 UA:UU:AAA A :AA: ::+ : : : ++A 188245 UAAUUGAAAUUCAAAA-AAAG-----CUG-GGGGGAGAA--AAAggccagcaugaagaaa 188295 __>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<__._>>>> 105 uauugucggcuuuggcAAUUUUUGGAAGcccucc.aaggg 143 A : : :++::AAU UUGGAA :: :C+ +: :: 188296 AA-GAGGAAGGUACAGAAUGAUUGGAA-UUGGCAgGUUAU 188333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3722,sp|AC011399.6|AC011399 Homo sapiens chromosome 5 clone CTB-25P15, complete sequence. ----isReversed: 0 ----hitSequence: AGAUUUGCUCAGUGGCAGUAUCAUAGCCAAAGGCAUCAUUAUUGCUAAUUGAAAACUUUUCCCAAUAACCUGCCAUGGCCUUGAAAUAUAGUAAGCAUUGGGAAUUUUGAGUCUCUAUGGA hit 135 : 168434 168554 (fwd) 34.76 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUGC C AG GGCA:UAU :+AGCCA A AGGC+: AUUA:UGC 168434 AGAUUUGCUC-AGUGGCAGUAUCAUAGCCA----------A----AGGCAUCAUUAUUGC 168478 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:+ CC CC A:G C:UG++AUAU:G GC:UUGG 168479 UAAUUGAAAACUUUUCCCAAUAACCUGCC-AUG--GCCUUGAAAUAUAGUAAGCAUUGGG 168535 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUU UG AG:C: ++ :G: 168536 AAUUU-UG--AGUCUCUA-UGGA 168554 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3802,sp|AC011497.6|AC011497 Homo sapiens chromosome 19 clone CTB-50E14, complete sequence. ----isReversed: 1 ----hitSequence: UGUGCGCAGUGGUAUUAUUGUAGCCAAUGAGGUUUAUCCGAGGUGCAAUUAUUGUGAAUGGGAAACUUUCGCAAUAACAUCAGCCAACAAGUGUCAUGGACCAUGAAGGCUUUGGGAGUUCAGAGCUAU hit 136 : 26582 26454 (rev) 26.47 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 U UGCGC AG GG A+UAU:GUA CCA+UGAGG+UU+ +CCGAGG GC:AUUA+UG 142005 ---UGUGCGC-AGUGGUAUUAUUGUAGCCAAUGAGGUUUA-UCCGAGGUGCAAUUAUUGU 142059 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 A:U:: AAACU+U C ::A:C C GCC ::+ + ::+++U+ A+:: ::+GG 142060 GAAUGGGAAACUUUCgCAAUAACAUCAGCC-AAC-AAGUGUCAUGGACCAU----GAAGG 142113 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 C UUUGG AG:: : ++: :: 142114 C----UUUGGGAGUUCAGAGCUAU 142133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3928,sp|AC011811.42|AC011811 Homo sapiens clone b250a12, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCGUAGCCAAUGAGCUUUACCCGAGGCGCGAUUAUUGCUAGUUAAAUAUUUAUAAAAACCUUUCGAGCAGCGCCUGAACAAGAAUAGGUUCAGAGGAGACUCCGGUAGUCUGAGUUUGGGCUUGGCCCAGGGUGGGGAAAAGCCCUUGUC hit 137 : 52400 52231 (rev) 40.34 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAUCGUAGCCA+UGAG +UU+ CCGAGGCGCGAUUA:UGC 179340 AGCUUUGCAC-AGUGGCAGUAUCGUAGCCAAUGAGCUUUA-CCCGAGGCGCGAUUAUUGC 179397 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____................ 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua................ 104 UAGUU AA A U+ U AACC CG:+: : :C: A:++++ 179398 UAGUUAAAUAUUUAUAAAAACCUUUCGAGCAGCGCCUGAACAAGaauagguucagaggag 179457 ..............__>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 ..............uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 :U :G: : :+:CA U GGAA : C C G : 179458 acuccgguagucugAGUUUGGGCUUGGCCCAGGGUGGGGAAAAGCCCU-UGUC 179509 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3942,sp|AC011884.8|AC011884 Homo sapiens chromosome , clone RP11-17N6, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCCGUGGCAGUAACCUAGUCAAUGAGGUUUCUCCAAGGCGCAGGUAUUGCUAAUUGAGAAAAAAUAAGAAAUACAGACUCUCGAGCCCCACCCAAACACAUUGAACCAAAACUAGCAUUUUAUCAAAACCCCA hit 138 : 145219 145079 (rev) 12.50 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC G GGCA:U UAG CA+UGAGG+UU +CC AG CG UA:UGC 17791 AGCUUUGUGC-CGUGGCAGUAACCUAGUCAAUGAGGUUUC-UCCAAGGCGCAGGUAUUGC 17848 ,,<<<<_________.__>>>>,,,...,,<<<<<<<<<<<<<<______>>>>>>>>.. 61 UAgUugAAAACUAUU.CCcaAccgC...CCgccuaagacgacauguuauauugucggc.. 114 UA:UU:A AA A U :AA:++ C :: : G : :: +++A A :: : C 17849 UAAUUGAGAAAAAAUaAGAAAUAC-agaCUCUC-GAGCCCCACCCAAACACAUUGAACca 17906 .>>>>>>,,,,,,,,,,,,<<<<___>>>> 115 .uuuggcAAUUUUUGGAAGcccuccaaggg 143 : :: AUUUU AA +CC C+ 17907 aAACUAGCAUUUUAUCAAAACCCCA----- 17931 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4896,sp|AC017099.11|AC017099 Homo sapiens BAC clone RP11-542D13 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGCGUUGCGCGGUGGCCGUAUGGUGGCCAAUGAGGUUUAUCCGAAGCGCGAUUAUUGCUAAUUGAAAACUUUUCGCAAUACCCCACCGUGACGACUUGCAAUAUAGUCGACAUCGGCAAUUUUUAACAGUCUCUACGGAGA hit 139 : 175113 174973 (rev) 90.70 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+C UUGCGC G GGC::UAU GU GC A+UGAGG+UU+ +CCGA GCGC AUUA::GC 55314 AGCGUUGCGC-GGUGGCCGUAUGGUGGCCAAUGAGGUUUA-UCCGAAGCGCGAUUAUUGC 55371 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUC CAA:++CCC:CC ::G CGAC:UG +AUAU:GUCG C:: GG: 55372 UAAUUGAAAACUUUUCGCAAUACCCCACC-GUGACGACUUGCAAUAUAGUCGACAUCGGC 55430 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUU + AG:C::++ +::G: 55431 AAUUUUUAACAGUCUCUAcGGAGA 55454 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4906,sp|AC018358.20|AC018358 Homo sapiens 3 BAC RP11-333B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUUACUAGUUGAAAAUUUUCCCCAAUACCCCGCCGUGACGACUUGAGAUAGAGGCAGCAUUGGCAAUUUUUGACAGUUUUUAGGGAUA hit 140 : 48038 47913 (rev) 40.02 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UA C :A ++ A +GA: G UUA:U C 57725 AGCUUUGCAC-AGUGGCAGUAUC---A-UA------GCCA-A-UGAG----GUUUAUUAC 57767 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAA U+U CCCAA:++CCCGCC ::GA G C: G+ AUA :G C GC::UGGC 57768 UAGUUGAAAAUUUUCCCCAAUACCCCGCC-GUGACGACUUGAGAUAGAGGCAGCAUUGGC 57826 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG: ::++ +:: : 57827 AAUUUUUGACAGUUUUUAgGGAUA 57850 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4982,sp|AC018616.5|AC018616 Homo sapiens chromosome 8, clone RP11-157I4, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGAACAUAGCCAUUGAGGUUCAUCUGAGGUGUAAUUAUUGCUAAUAAAAAAAAAAAUGAAGACAGGGAGAAUUAGGAUGGGGAUGAAGCAGCACCAGAAGUUAAAGCAAGUUGACUA hit 141 : 4891 4759 (rev) 12.32 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA: A :UA CCA UGAGG+U++ +C+GAGG G: UUA:UGC 161058 AGCUUUGUGC-AGUGGCAG-AACAUAGCCAUUGAGGUUCA-UCUGAGGUGUAAUUAUUGC 161114 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____..__>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua..uauugucggcuuug 118 UA:U AAAA A A:+ ::+ : ::: :: :G+U+ A: :: ::: : + 161115 UAAUAAAAAAAAAAAU-GAAGA----CAG-GGAGAAUUAGGAUGggGAUGAAGCAGCACC 161168 >>,,,,,,,,,,,,<<<<___>>>> 119 gcAAUUUUUGGAAGcccuccaaggg 143 ::AA UU +AAG :::+ +::: 161169 AGAAGUU---AAAGCAAGUUGACUA 161190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4996,sp|AC018639.8|AC018639 Human Chromosome 7 clone RP11-128A6, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCAGUAUUGUAGCCGAUGAGGUUUAUCCAAGGCAUGAUUAUUGCUAAUUGAAAUUCAAAAAAAGCUGGGGGGAGAAAAAGGCCAGCAUGAAGAAAAAGAGGAAGGUACAGAAUGAUUGGAAUUGGCAGGUUAU hit 142 : 119980 119834 (rev) 25.53 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAU +AGCC +UGAGG+UU+ +CC AGGC+ AUUA:UGC 37600 AGCUUUGCAC-AGUGGCAGUAUUGUAGCCGAUGAGGUUUA-UCCAAGGCAUGAUUAUUGC 37657 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____................ 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua................ 104 UA:UU:AAA A :AA: ::+ : : : ++A 37658 UAAUUGAAAUUCAAAA-AAAG-----CUG-GGGGGAGAA--AAAggccagcaugaagaaa 37708 __>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<__._>>>> 105 uauugucggcuuuggcAAUUUUUGGAAGcccucc.aaggg 143 A : : :++::AAU UUGGAA :: :C+ +: :: 37709 AA-GAGGAAGGUACAGAAUGAUUGGAA-UUGGCAgGUUAU 37746 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5427,sp|AC020978.10|AC020978 Homo sapiens chromosome 16 clone RP11-96D1, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGAGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCAAGGCGUAAUUAUUGGUAGUUGAAACUCAAGAGUUGAGCCCCAUAAGAAUUCCAAUUUGCUUAAAGCAAAUGUAGGUUUUGUUUGCGUCUCCAUU hit 143 : 11527 11663 (fwd) 29.11 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU UAGCCA+UGAGG+UU+ +CC AGGCG AUUA:UG 11527 AGCUUUGAGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCAAGGCGUAAUUAUUGG 11584 ,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA U::AA ACU ::A C+CC ::: : :A::: A: UU+ :U :::G: :+ 11585 UAGUUGAA-ACUCAAgagU-UGAGCCCC-AUA-AGAAUUCCAAUUUG--CUUAAAGCAAA 11638 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 :::A UUUUG G : +C : 11639 UGUAGGUUUUGUUUGCGUCUC-CAUU 11663 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5521,sp|AC021305.9|AC021305 Homo sapiens chromosome 8, clone RP11-140B16, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGUGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAACAAAAUGGAAGACAGGUGACUUUUCCCCUCCCUUGAAUAAACACUUCUUCCACACAUGGAUUUC hit 144 : 150467 150337 (rev) 36.40 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCG +G GGCA:UAUC:UAGCCA+UGAGG+UU+ +CCGAGGCG:GAUUA:UGC 14450 AGCUUUGCG--UGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCCGAGGCGUGAUUAUUGC 14506 ,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA:U::AAAAC A ::A:+G G: ::: :: U :: ::: 14507 UAAUUGAAAACAAAAuggA-AGACAG---GUGACUU-UUCCC--CUCCC-UUGA---AUA 14555 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 :CA UU UU A ::: + ::: 14556 AACACUUCUUCCACACAUGGA-UUUC 14580 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5682,sp|AC022079.16|AC022079 Homo sapiens 12 BAC RP11-425D17 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AACUUUGCACAAUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCAAGGCGGAAUUACUGCUGACAGAAUAGAUGUUUGCUUAAAAGACUUUAUGCAGAAUCAUGAGAAUCUAAGCACCUAAACUUAAGGUG hit 145 : 45662 45790 (fwd) 11.14 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUGC C A GGCA:UAU UAGCCA+UGAGG+UU+ +CC AGGCG AUUA:UGC 45662 AACUUUGCAC-AAUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCAAGGCGGAAUUACUGC 45719 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+: A AA UA ++: G ::: :A +GA : +U+ A : UC :U::: 45720 UGA--CAGAA-UAGAU--GUUUG---CUU-AAA-AGACUUUAUGCAGAAUC----AUGAG 45765 ,,,,,,,,,,,,<<<<__......_>>>> 121 AAUUUUUGGAAGcccucc......aaggg 143 AAU U AAGC:C:++ A:G:G 45766 AAUCU----AAGCACCUAaacuuaAGGUG 45790 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5980,sp|AC023043.8|AC023043 Homo sapiens chromosome 18, clone RP11-49I11, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUACAGUGCCAGUAUCAGAGCCAAUGAGGUUUUUCUGAGGUGUGAUUAUUGCUAAUUGAAAACUUUUCCCAAUUAAAAACAAAAACAAAAUAAAAUUUAAAAAACACACCAGAG hit 146 : 104876 104995 (fwd) 49.88 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG G CA:UAUC: A CCA+UGAGG+UUU +C+GAGG :GAUUA:UGC 104876 AGCUUUGUAC-AGUGCCAGUAUCAGAGCCAAUGAGGUUUU-UCUGAGGUGUGAUUAUUGC 104933 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA: ::: : : +++A A : :+::: 104934 UAAUUGAAAACUUUUCCCAAU-----UAA-AAA-------CAAAAA-------CAAAAUA 104973 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA UUU +AA C C CC G G 104974 AAAUUUAAAAAACACACC-AGAG 104995 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6337,sp|AC024903.17|AC024903 Homo sapiens 16 BAC RP11-71L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGAGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCAAGGCGUAAUUAUUGGUAGUUGAAACUCAAGAGUUGAGCCCCAUAAGAAUUCCAAUUUGCUUAAAGCAAAUGUAGGUUUUGUUUGCGUCUCCAUU hit 147 : 9688 9552 (rev) 29.11 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU UAGCCA+UGAGG+UU+ +CC AGGCG AUUA:UG 157551 AGCUUUGAGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCAAGGCGUAAUUAUUGG 157608 ,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA U::AA ACU ::A C+CC ::: : :A::: A: UU+ :U :::G: :+ 157609 UAGUUGAA-ACUCAAgagU-UGAGCCCC-AUA-AGAAUUCCAAUUUG--CUUAAAGCAAA 157662 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 :::A UUUUG G : +C : 157663 UGUAGGUUUUGUUUGCGUCUC-CAUU 157687 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6524,sp|AC025569.37|AC025569 Homo sapiens 12 BAC RP11-588H23 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AUCCUUUAAGUACAUUUUCAGCUUCAUGCAGCCAGUGAGGUUUUUCUGAGGUGUGAUUAUUGCUAAUUGAAAACUUCCCAAUACCCGGUGGUGAUGAUUUGCAAUACAGUUGGCAUCGGAAAAUUUUGACAAUCUCUACAGA hit 148 : 97145 97286 (fwd) 41.47 bits ::::::...:::::::::::<<-<<<<<..-<<<_________________>>>>>>>>- 1 AuCUUU...GCGCUAGGGGCaaUaucgu..AgccAGUGAGGcUuuAaCCGAggcgcgauU 55 AUC UU G C A CA: UC:U A CCAGUGAGG+UUU +C+GAGG G:GA U 97145 AUCCUUuaaGUAC-AUUUUCAGCUUCAUgcAGCCAGUGAGGUUUU-UCUGAGGUGUGAUU 97202 ->>,,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>> 56 AuuGCUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcu 115 A:UGCUA:UUGAAAACU UCCCAA:++CC :+ ::GA: A::+G +AUA+::U :GC: 97203 AUUGCUAAUUGAAAACU--UCCCAAUACCCGGUG-GUGAUGAUUUGCAAUACAGUUGGCA 97259 >>>>>,,,,,,,,,,,,<<<<___>>>> 116 uuggcAAUUUUUGGAAGcccuccaaggg 143 : +: AA UUUUG+ A :C: ++ :G: 97260 UCGGAAAAUUUUGACAAUCUCUA-CAGA 97286 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7035,sp|AC027373.11|AC027373 Homo sapiens chromosome 8, clone RP11-521I2, complete sequence. ----isReversed: 0 ----hitSequence: AACUUUGUGCAAUGGCAGCCAAUGAGGUUUACCUGAGGUGUGAUUAUUGCUAAUGGAAAACUCUUCUCAGUACCCUGCCACGAUGAGUUGAAAUAUAGUCAGCAUUGGCAAUUUUUGACCGUCUCUCCAGAGA hit 149 : 96466 96598 (fwd) 53.47 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUG GC A AU :A CCA+UGAGG+UU+ C+GAGG : AUUAUUGC 96466 AACUUUGUGC-------A--AUGGCAGCCAAUGAGGUUUA-CCUGAGGUGUGAUUAUUGC 96515 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: :GAAAACU UUC C: :++CC GCC A:GA:GA :UG++AUAU: UC:GC:UUGGC 96516 UAAUGGAAAACUCUUCUCAGUACCCUGCC-ACGAUGAGUUGAAAUAUAGUCAGCAUUGGC 96574 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ G:C::+C A::G: 96575 AAUUUUUGACCGUCUCUCcAGAGA 96598 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7155,sp|AC034240.5|AC034240 Homo sapiens chromosome 5 clone CTD-2335C11, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUAUGCAGCAGCAACAUCAUAGACAAUGGGGUUUAUCUGAAGUGCGAUUAUUGCUAAUUGAGAAAAAAAAUAAAGGCUGACUGCCAUCUAUAAAACAAGUCAUCGGCCCACCUGAUUGAUGAAGUGCCCCCUCCACUGGGAA hit 150 : 34587 34732 (fwd) 11.36 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUU GC AG GCAA AUC:UA : A+UG GG+UU+ +C+GA : G:GAUUAUUGC 34587 AGCUUUAUGC-AGCAGCAACAUCAUAGACAAUGGGGUUUA-UCUGAAGUGCGAUUAUUGC 34644 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____.....__>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua.....uauugucggcu 115 UA:UU:A AA A :AA: G : + ::::C: ::+ U+A +:: :G::: 34645 UAAUUGAGAAAAAAAAUAAAG-G---CUG-ACUGCCAUCUAUAAaacaaGUCAUCGGCCC 34699 >>>>>,,,,,,,,,,,,<<<<__......._>>>> 116 uuggcAAUUUUUGGAAGcccucc.......aaggg 143 : + :A U U GAAG: C:CC +:G : 34700 ACCUGAUUGAU--GAAGUGCCCCcuccacuGGGAA 34732 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7227,sp|AC040171.4|AC040171 Homo sapiens chromosome 16 clone RP11-52D13, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCCCAGUGGCGGCAUUGUAGCCAAUGAGGUUUACCUGAAGUACAAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCUCCAUGACGACUUGAAAUAUAGUCAGCACUGGCAAUUUUUGACCGUCUCUACAGAGA hit 151 : 103906 103766 (rev) 94.57 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGC:: AU:G+A C A+UGAGG+UU+ C+GA G +C:AUUA::GC 47463 AGCUUUGCCC-AGUGGCGGCAUUGUAGCCAAUGAGGUUUA-CCUGAAGUACAAUUAUUGC 47520 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCC:CC :GA GAC:UG++AUAU:GUC GC: UGG: 47521 UAAUUGAAAACUUUUCCCAAUACCCCUCC-AUGACGACUUGAAAUAUAGUCAGCACUGGC 47579 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ G:C::++ A::G: 47580 AAUUUUUGACCGUCUCUAcAGAGA 47603 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7318,sp|AC051642.5|AC051642 Homo sapiens chromosome 8, clone RP11-583M2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCAUAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCAAGGCACAAUUAUUGCUGGUUAUUGGUAAUUAUCCUACAGAAAUGAAAACUUACGUUCAUACAAACAUGUGUGUGCAGAUAACAAG hit 152 : 81574 81701 (fwd) 11.11 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC AG GGCA:UAU :+AGCCA+UGAGG+UU+ +CC AGGC+: AUUA:UGC 81574 AGCUUUGCAU-AGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCCAAGGCACAAUUAUUGC 81631 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U+:UU A U U AA: ::::: : :G :A+G++A A+U: C: : ::::: 81632 UGGUU----AUUGGU---AAU-----UAUCCUACAGAAAUGAAA-ACUUACGUUCAUACA 81678 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA U UG GC :++A: G 81679 AACAUGUGUGUGCAGAUAACAAG 81701 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7337,sp|AC055120.5|AC055120 Homo sapiens BAC clone RP11-336N6 from 4, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUACAAUGGCAGUAUCAUAGCCAAUGAGGUUUAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUAUUUCUUGCGAAAAUAGAAUAUAGCUAUAUCACUGACAUGGAUGCACAAGCUACUGUUUUAAAAUAAGUUUAUC hit 153 : 152705 152850 (fwd) 39.14 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C A GGCA:UAUC:+AGCCA+UGAGG+UU+ +C+GAGGC+:GAUUA:UGC 152705 AGCUUUGUAC-AAUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCUGAGGCAUGAUUAUUGC 152762 ,,<<<<_________..__......>>>>,,,,,<<<<<<<<<<<<<<______>>>>>> 61 UAgUugAAAACUAUU..CC......caAccgCCCgccuaagacgacauguuauauugucg 112 UA:UU:AAAACU+U C :AA:+G ::: :::A: CA +U A A UG : 152763 UAAUUGAAAACUUUAuuUCuugcgaAAAUAGAAUAUA-GCUAUAUCA-CUGACA-UGGAU 152819 >>.>>>>>>,,,,,,,,,,,,<<<<___>>>> 113 gc.uuuggcAAUUUUUGGAAGcccuccaaggg 143 G: ::+:::A U UUU +AA ::::+ :::: 152820 GCaCAAGCUACUGUUUUAAAAUAAGUU-UAUC 152850 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7349,sp|AC055725.22|AC055725 Homo sapiens 3 BAC RP11-470E12 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCGGUAUCGUAGCCAAUGAGGUCUAUCCGAGGAGCGAUUACCGCUCAUCGAAAACACAUUAAAGGAACUAAGAAUUCAUUAAGAAUUAAUAACAUUAACAUUAACUUAAUGUUAACAUUGUUAACAA hit 154 : 114390 114250 (rev) 29.77 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGC :UAUCGUA CCA+UGAGG+ U+ +CCGAGG GCGAUUA: GC 54700 AGCUUUGCAC-AGUGGCGGUAUCGUAGCCAAUGAGGUCUA-UCCGAGGAGCGAUUACCGC 54757 ,,<<<<_____.____......__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>> 61 UAgUugAAAAC.UAUU......CCcaAccgCCCgccuaagacgacauguuauauugucgg 113 U :U::AAAAC AUU C::A:+ C: : :A ::::A U+A A U:::: 54758 UCAUCGAAAACaCAUUaaaggaACUAAGAAUUCAUU-AAGAAUUAA--UAACA-UUAACA 54813 >>>>>>>,,,,,,,,,,,,<<<<___>>>> 114 cuuuggcAAUUUUUGGAAGcccuccaaggg 143 U:+: :AAU UU +A :: U++ A :: 54814 UUAACUUAAUGUU--AACAUUGUUA-ACAA 54840 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7623,sp|AC068025.12|AC068025 Homo sapiens chromosome 17, clone RP11-802D6, complete sequence. ----isReversed: 0 ----hitSequence: AACUUUGUGCAGUGGCAGUAUUGUAGCCAAUGAGAUUUAUCCGAGGUGUGAUUAUUGCUCAUUGAAAAAUCAUAGGCUGGGCACGGUGGCUCACAUCUGUAAUCUUAGUACUUUGGGAGGCCGAAGCAGGUGGA hit 155 : 142956 143089 (fwd) 22.87 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUG GC AG GGCA:UAU UA CCA+UGAG +UU+ +CCGAGG G AUUA:UGC 142956 AACUUUGUGC-AGUGGCAGUAUUGUAGCCAAUGAGAUUUA-UCCGAGGUGUGAUUAUUGC 143013 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U :U :AAAA : A:+G C G + :A+: : :U++ AU U: : : U:++ 143014 UCAUUGAAAAA------UCAUAGGCUGGG-CACGGUGGCUCACAUCUGUAAUC-UUAGU- 143064 ,,,,,,,,,,,,<<<<__...._>>>> 121 AAUUUUUGGAAGcccucc....aaggg 143 A UUUGG AG CC: + +:GG 143065 AC--UUUGGGAGGCCGAAgcagGUGGA 143089 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7678,sp|AC068282.8|AC068282 Homo sapiens BAC clone RP11-314L11 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUACUCAAGGAGUGAUUAUUGCUAAUUGAAAAACUGAUGAACAUAUGAAGUGCAUGUCUGUAGCUUAAUAGUACAAAGUCAGCCAACUUGAGACCUUGGCUCAGGUA hit 156 : 151193 151335 (fwd) 38.27 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUC:UA CCA+UGAGG+UU+ C AGG G:GAUUA:UGC 151193 AGCUUUGCGC-AGUGGCAGUAUCAUAGCCAAUGAGGUUUA-CUCAAGGAGUGAUUAUUGC 151250 ,,<<<<._________..__....>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>> 61 UAgUug.AAAACUAUU..CC....caAccgCCCgccuaagacgacauguuauauugucgg 113 UA:UU AAAACU U C AA: GC G:C+:+:: : :A U++ U: : : 151251 UAAUUGaAAAACUGAUgaACauauGAAGUGCAUGUCUGUAGCUUAA--UAG---UACAAA 151305 >>>>>>>,,,,,,,,,,,,<<<<___>>>> 114 cuuuggcAAUUUUUGGAAGcccuccaaggg 143 :+:+G:CAA UU G+ : :+CA: : 151306 GUCAGCCAACUUGAGACCUUGGCUCAGGUA 151335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7762,sp|AC068594.15|AC068594 Homo sapiens chromosome 17, clone RP11-285E9, complete sequence. ----isReversed: 1 ----hitSequence: CUCUCUGCACAGUGGCCCCAUCAUAGUCAGUGAGGUUUACCCGAGACGUGAUUAUUGCUCAUUGAAAACUUCCCAAUACCACAAGAUAACUUGCAAUAGAGCUGGCACCGGCCAUUUCCAUUUUUUUU hit 157 : 21849 21722 (rev) 28.91 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 UCU UGC C AG GGC:: AUC:UAG:CAGUGAGG+UU+ CCGAG:CG:GAUUA::GC 146653 CUCUCUGCAC-AGUGGCCCCAUCAUAGUCAGUGAGGUUUA-CCCGAGACGUGAUUAUUGC 146710 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U :UUGAAAACU UCCCAA:++ :C GA: C: G +AUA :G :GC G: 146711 UCAUUGAAAACU--UCCCAAUAC---CAC-AAGAUAACUUGCAAUAGAGCUGGCACCGGC 146764 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AUUU+ :: + :: 146765 CAUUUC------CAUUUU-UUUU 146780 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7875,sp|AC068954.5|AC068954 Homo sapiens chromosome 8, clone RP11-45A11, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGUAGCAUUGUAACCAAUUAGGCUUAUCCAAGGCACAAUUAUUGCUAAUUAAAUAUCAUAUUUCUGUUUCCUUAUAUUUAAACAGAGGAAACUGGGCUACAUGAUUUCUUCAUUCCCUCUAAGAA hit 158 : 132227 132090 (rev) 23.51 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GG A: AU:G+A CCA+U AGGCUU+ +CC AGG +C:AUUA:UGC 31315 AGCUUUGUGC-AGUGGUAGCAUUGUAACCAAUUAGGCUUA-UCCAAGGCACAAUUAUUGC 31372 ,,<<<<_____..______>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>> 61 UAgUugAAAAC..UAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuug 118 UA: : AA A UAUU C : : +C :::+: :A+:A+A:G++A : U: G: :+: 31373 UAAUUAAAUAUcaUAUUUCUGUUUCCUUAUAUUUAAACAGAGGAAA--C--UG-GGCUAC 31427 >>,,,,,,,,,,,,<<<<___>>>> 119 gcAAUUUUUGGAAGcccuccaaggg 143 :: AUUU+U A CUC AAG 31428 AUGAUUUCUUCAUUCCCUCUAAGAA 31452 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7891,sp|AC069023.5|AC069023 Homo sapiens chromosome 10 clone RP11-457D2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUACAGUGGCAGUAUCUUAGCCGAUGAGGUUUAUCCGAGGCACGAUUAUUGCUAAUUGAAGUUUGCUUUGUCAGUUUUUGAUUCAUGUACUUUGGGGCCCUGUUGUUAGGUACAUAUUCGUCUACACUCAUUACAUCUUCUUGAUGUAUUAAAAAUUUUUUUCCUAUGAA hit 159 : 61200 61025 (rev) 23.88 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG GGCA:UAUC:+AGCC +UGAGG+UU+ +CCGAGGC+:GAUUA:UGC 70146 AGCUUUGUAC-AGUGGCAGUAUCUUAGCCGAUGAGGUUUA-UCCGAGGCACGAUUAUUGC 70203 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____................ 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua................ 104 UA: ::AA U U :: :+G ::: :: + :CAUGU+ 70204 UAAUUGAAGUUUGCUU-UGUCAG---UUU-UUG-AUUCAUGUACuuuggggcccuguugu 70257 ................................__>>>>>>>>>>>>>>,,,,,,,,,,,, 105 ................................uauugucggcuuuggcAAUUUUUGGAAG 132 U UUG: G ::U:::AAUUUUU 70258 uagguacauauucgucuacacucauuacaucuUCUUGAU-GUAUUAAAAAUUUUU----- 70311 <<<<___>>>> 133 cccuccaaggg 143 ::C ++ G:: 70312 UUCCUA-UGAA 70321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8277,sp|AC073476.6|AC073476 Homo sapiens BAC clone RP11-690I21 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCGUAGCCAAUGAGCUUUACCCGAGGCGCGAUUAUUGCUAGUUAAAUAUUUAUAAAAACCUUUCGAGCAGCGCCUGAACAAGAAUAGGUUCAGAGGAGACUCCGGUAGUCUGAGUUUGGGCUUGGCCCAGGGUGGGGAAAAGCCCUUGUC hit 160 : 39411 39580 (fwd) 40.34 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAUCGUAGCCA+UGAG +UU+ CCGAGGCGCGAUUA:UGC 39411 AGCUUUGCAC-AGUGGCAGUAUCGUAGCCAAUGAGCUUUA-CCCGAGGCGCGAUUAUUGC 39468 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____................ 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua................ 104 UAGUU AA A U+ U AACC CG:+: : :C: A:++++ 39469 UAGUUAAAUAUUUAUAAAAACCUUUCGAGCAGCGCCUGAACAAGaauagguucagaggag 39528 ..............__>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 ..............uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 :U :G: : :+:CA U GGAA : C C G : 39529 acuccgguagucugAGUUUGGGCUUGGCCCAGGGUGGGGAAAAGCCCU-UGUC 39580 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8441,sp|AC073989.6|AC073989 Homo sapiens BAC clone RP11-473L20 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGUUUUGCACAGAGGCAGUAUCGUAGCCAUGGAGGUUUAUCUGGGGUGAGGUUAUUGAUAAUUGAAAAUGAAAACAAUAAAGACAGAAUUAUGUUAGGAGACAGACUGUGGCCCUUCAUUGGGAUGGCAUUGGUG hit 161 : 66929 67063 (fwd) 11.86 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUGC C AG GGCA:UA C UA CCA GAGG+UU+ +C+G GG G G UUA:UG 66929 AGUUUUGCAC-AGAGGCAGUAUCGUAGCCAUGGAGGUUUA-UCUGGGGUGAGGUUAUUGA 66986 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAA A CAA:+ G:C A : : ::: U++ A ::: :+: U G:C 66987 UAAUUGAAAAUGAAAA-CAAUAAA--GAC-AGA-AUUAUGUUAGGAGACAGACUGUGGCC 67041 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 U UUGG A C + G 67042 CUUCAUUGGGAUGGCAUU-GGUG 67063 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8645,sp|AC078878.20|AC078878 Homo sapiens 12 BAC RP11-983C2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AUUUAACAUUAGGUAUAUCUCCUAAUGCUAUCCCUCCCUAUCUGAGGUGUAAUUAUUGCAUGAAAAUUUUUCCCAGUACUCGGUCAUGAUGACUUGAAAUAGAAUCAACAUUGGCAAUCUUUGACAGUCUCUAUGGAGA hit 162 : 160305 160443 (fwd) 12.55 bits :::::::::::::::::<<-<<<<<-<<<____..___...__________>>>>>>>>- 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUG..AGG...cUuuAaCCGAggcgcgauU 55 A UUU A ::UAU :: C:A+UG A C +UA+C+GA:G :: AUU 160305 A--UUUA----ACAUUAGGUAUAUCUCCUAAUGcuAUCccuCCCUAUCUGAGGUGUAAUU 160358 ->>,,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>> 56 AuuGCUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcu 115 A::GC UGAAAA U+UUCCCA ++ C G:C A:G :GA : G++AUA : UC: C: 160359 AUUGC---AUGAAAAUUUUUCCCAGUACUCGGUC-AUGAUGACUUGAAAUAGAAUCAACA 160414 >>>>>,,,,,,,,,,,,<<<<__._>>>> 116 uuggcAAUUUUUGGAAGcccucc.aaggg 143 UUG:CAAU UUUG+ AG:C::++ +::G: 160415 UUGGCAAUCUUUGACAGUCUCUAuGGAGA 160443 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8728,sp|AC079093.16|AC079093 Homo sapiens chromosome 8, clone RP11-265H5, complete sequence. ----isReversed: 1 ----hitSequence: AACUUUGUGCAAUGGCAGCCAAUGAGGUUUACCUGAGGUGUGAUUAUUGCUAAUGGAAAACUCUUCUCAGUACCCUGCCACGAUGAGUUGAAAUAUAGUCAGCAUUGGCAAUUUUUGACCGUCUCUCCAGAGA hit 163 : 111536 111404 (rev) 53.47 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUG GC A AU :A CCA+UGAGG+UU+ C+GAGG : AUUAUUGC 30077 AACUUUGUGC-------A--AUGGCAGCCAAUGAGGUUUA-CCUGAGGUGUGAUUAUUGC 30126 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: :GAAAACU UUC C: :++CC GCC A:GA:GA :UG++AUAU: UC:GC:UUGGC 30127 UAAUGGAAAACUCUUCUCAGUACCCUGCC-ACGAUGAGUUGAAAUAUAGUCAGCAUUGGC 30185 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ G:C::+C A::G: 30186 AAUUUUUGACCGUCUCUCcAGAGA 30209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9121,sp|AC082651.6|AC082651 Homo sapiens BAC clone RP11-521D12 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGAUUUCUGCAGUGGCGGUACCAUAGCCAAUGAGGUUUGCCUGAGACAUGAUUAUUGCUAAUUGAAAACUUUUCCCUAUAGCUUGUCAUGACAACUUGAAAUAUAAUUGGCAUCGAGAAUUUUUGAGACUCUCUACAG hit 164 : 113253 113116 (rev) 76.71 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUU GC AG GGC::UA C:+AG CA+UGAGG+UU C+GAG C+:G UUA::GC 90518 AGAUUUCUGC-AGUGGCGGUACCAUAGCCAAUGAGGUUU-GCCUGAGACAUGAUUAUUGC 90575 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U GAAAACU+UUCCC A:+GC :C A:GAC A :UG++AUAU: U GGC:U G: 90576 UAAUUGAAAACUUUUCCCUAUAGCUUGUC-AUGACAACUUGAAAUAUAAUUGGCAUCGAG 90634 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ A C: UC A :G 90635 AAUUUUUGAGA-CUCUCU-ACAG 90655 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9134,sp|AC083804.13|AC083804 Homo sapiens 3 BAC RP11-269P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAAGCGCGAUUAUUGCUAAUUGAAAACUAAAUCUUUGUAGUUUACUUACAUAGGCAUAUUUGUGACUGUGUAUGUA hit 165 : 19740 19623 (rev) 53.64 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAUCGUAGC A+UGAGG+UU+ +CCGA GCGCGAUUA:UGC 87240 AGCUUUGUGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAAGCGCGAUUAUUGC 87297 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU:AAAACU :AA: :::U +:A++ UUA U:++ U::: 87298 UAAUUGAAAACU-----AAAU-----CUUU----GUAGU--UUACU---UACA---UAGG 87335 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AU UUUG A : ::++ :: : 87336 CAUAUUUGUGACUGUGUA-UGUA 87357 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9332,sp|AC084837.4|AC084837 Homo sapiens chromosome 8, clone CTD-2005J16, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUAAAGUUUAUCUGAGAUGUGAUUAUUGCCAGUUGAAAGCUUCUCCCACUACCCUGCCAUGACAACUUGCAGUAUAAUUGACACUGGCAAUCUUUUAUAGUCUCUAUGGAGA hit 166 : 69910 69770 (rev) 77.51 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUC:UA CA+U A G+UU+ +C+GAG G:GAUUA:UGC 69687 AGCUUUGCGC-AGUGGCAGUAUCAUAGCCAAUAAAGUUUA-UCUGAGAUGUGAUUAUUGC 69744 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 A: UGAAA CU+ UCCCA :++CC GCC :G C A :UG ++UAU: U G C: UGGC 69745 CAGUUGAAAGCUUCUCCCACUACCCUGCC-AUGACAACUUGCAGUAUAAUUGACACUGGC 69803 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAU UUU + AG:C::++ +::G: 69804 AAUCUUUUAUAGUCUCUAuGGAGA 69827 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9483,sp|AC087456.3|AC087456 Homo sapiens chromosome 15, clone RP11-26A13, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUUGUAGCCAAUGAGGUUUAUCUGAGGCGCAAUUAUUGCUAAUUGAAAAAAAUGGACAUGUAAUCUGAAUAGACAUUUCUUAAAAGAAGGCAUAUA hit 167 : 91960 91846 (rev) 47.36 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU:GUAGCCA+UGAGG+UU+ +C+GAGGCGC:AUUA:UGC 78986 AGCUUUGUGC-AGUGGCAGUAUUGUAGCCAAUGAGGUUUA-UCUGAGGCGCAAUUAUUGC 79043 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU:AAAA :AA: G G:C A: U+AU G :U+G:C 79044 UAAUUGAAAA-------AAAU-G---GAC-AUG--------UAAUC-----UGAAUAGAC 79078 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 A UU UU +AAG:: :C+ : :: 79079 AUUUCUUAAAAGAAGGCA-UAUA 79100 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9665,sp|AC090096.5|AC090096 Homo sapiens chromosome 8, clone RP11-159C14, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCCGUGGCAGUAACCUAGUCAAUGAGGUUUCUCCAAGGCGCAGGUAUUGCUAAUUGAGAAAAAAUAAGAAAUACAGACUCUCGAGCCCCACCCAAACACAUUGAACCAAAACUAGCAUUUUAUCAAAACCCCA hit 168 : 67818 67678 (rev) 12.50 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC G GGCA:U UAG CA+UGAGG+UU +CC AG CG UA:UGC 105341 AGCUUUGUGC-CGUGGCAGUAACCUAGUCAAUGAGGUUUC-UCCAAGGCGCAGGUAUUGC 105398 ,,<<<<_________.__>>>>,,,...,,<<<<<<<<<<<<<<______>>>>>>>>.. 61 UAgUugAAAACUAUU.CCcaAccgC...CCgccuaagacgacauguuauauugucggc.. 114 UA:UU:A AA A U :AA:++ C :: : G : :: +++A A :: : C 105399 UAAUUGAGAAAAAAUaAGAAAUAC-agaCUCUC-GAGCCCCACCCAAACACAUUGAACca 105456 .>>>>>>,,,,,,,,,,,,<<<<___>>>> 115 .uuuggcAAUUUUUGGAAGcccuccaaggg 143 : :: AUUUU AA +CC C+ 105457 aAACUAGCAUUUUAUCAAAACCCCA----- 105481 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9865,sp|AC090621.10|AC090621 Homo sapiens chromosome 18, clone RP11-396N11, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCACUAUUGUAGCUACUGAGGUUCCUCCAAGGUGUGAUUAUUGCUAAUUAAAAACAUUUCCCAAUACCACGGUGUGAUGACUUGCAUUAGAAUGGGCAUUGGCAAUUUUUGACAGUCUCUACAGAGA hit 169 : 169830 169690 (rev) 70.30 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU UA C:A UGAGG+U+ +CC A:G G AUUA:UGC 19029 AGCUUUGUGC-AGUGGCACUAUUGUAGCUACUGAGGUUCC-UCCAAGGUGUGAUUAUUGC 19086 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU AAAAC +UUCC AA:++C CG : ::GA: A : G + UA : U :GC::U: C 19087 UAAUUAAAAACAUUUCCCAAUACCACGGU-GUGAUGACUUGCAUUAGAAUGGGCAUUGGC 19145 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ A::G: 19146 AAUUUUUGACAGUCUCUAcAGAGA 19169 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9928,sp|AC090771.4|AC090771 Homo sapiens chromosome 18, clone RP11-795H16, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGUGGCACUAUUGUAGCUACUGAGGUUCCUCCAAGGUGUGAUUAUUGCUAAUUAAAAACAUUUCCCAAUACCACGGUGUGAUGACUUGCAUUAGAAUGGGCAUUGGCAAUUUUUGACAGUCUCUACAGAGA hit 170 : 104218 104358 (fwd) 70.30 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU UA C:A UGAGG+U+ +CC A:G G AUUA:UGC 104218 AGCUUUGUGC-AGUGGCACUAUUGUAGCUACUGAGGUUCC-UCCAAGGUGUGAUUAUUGC 104275 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU AAAAC +UUCC AA:++C CG : ::GA: A : G + UA : U :GC::U: C 104276 UAAUUAAAAACAUUUCCCAAUACCACGGU-GUGAUGACUUGCAUUAGAAUGGGCAUUGGC 104334 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ A::G: 104335 AAUUUUUGACAGUCUCUAcAGAGA 104358 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #106,sp|AC091195.6|AC091195 Homo sapiens chromosome 8, clone RP11-814D21, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUAAAGUUUAUCUGAGAUGUGAUUAUUGCCAGUUGAAAGCUUCUCCCACUACCCUGCCAUGACAACUUGCAGUAUAAUUGACACUGGCAAUCUUUUAUAGUCUCUAUGGAGA hit 171 : 27579 27719 (fwd) 77.51 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUC:UA CA+U A G+UU+ +C+GAG G:GAUUA:UGC 27579 AGCUUUGCGC-AGUGGCAGUAUCAUAGCCAAUAAAGUUUA-UCUGAGAUGUGAUUAUUGC 27636 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 A: UGAAA CU+ UCCCA :++CC GCC :G C A :UG ++UAU: U G C: UGGC 27637 CAGUUGAAAGCUUCUCCCACUACCCUGCC-AUGACAACUUGCAGUAUAAUUGACACUGGC 27695 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAU UUU + AG:C::++ +::G: 27696 AAUCUUUUAUAGUCUCUAuGGAGA 27719 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #134,sp|AC091485.8|AC091485 Homo sapiens BAC clone RP11-434N4 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUAGCAGUAUCGUAGCCAAUGAGGUUUAUCUGAGUGCAAUUAUUGCUAAUUGGAAACUUUUCCCAAUACCCCACUGCAAUUACUUGCGAUAUAGUCAGCACUGGCAAUUUUUGACAGUCUCUAUGGAGA hit 172 : 53471 53332 (rev) 77.84 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GCA:UAU GUAG:CA+UGAGG+UU+ +C+GAG: GC AUUA:UGC 58593 AGCUUUGUGC-AGUAGCAGUAUCGUAGCCAAUGAGGUUUA-UCUGAGU-GCAAUUAUUGC 58649 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUG AAACU+UUCCCAA:++CCC:C: :::A: AC:UG AUAU:GU :G:::U:G: 58650 UAAUUGGAAACUUUUCCCAAUACCCCACU-GCAAUUACUUGCGAUAUAGUCAGCACUGGC 58708 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 58709 AAUUUUUGACAGUCUCUAuGGAGA 58732 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #636,sp|AC092451.12|AC092451 Homo sapiens 12p BAC RP11-318G8 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCACAAUUAUUGCUAAUUGAAAACAUUUCCCAAUAUCCUGCCAUGAAGACUUGUAAUAUAGUUGGCAUUAGCAAUUUUUGACAGUCUCUACGGAGA hit 173 : 2781 2641 (rev) 96.57 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAU :+AGCCA+UGAGG+UU+ +CCGAGGC+: AUUA:UGC 71525 AGCUUUGCAC-AGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCCGAGGCACAAUUAUUGC 71582 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAAC +UUCCCAA:+ CC GC A:GA: AC:UGU+AUAU:GU :GC:UU GC 71583 UAAUUGAAAACAUUUCCCAAUAUCCUGCC-AUGAAGACUUGUAAUAUAGUUGGCAUUAGC 71641 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 71642 AAUUUUUGACAGUCUCUAcGGAGA 71665 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #839,sp|AC092756.2|AC092756 Homo sapiens chromosome 15 clone RP11-429D19 map 15q21.3, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAAUGGCAAUAUUUUAGCCAGGGCUGUUCAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUUCACAAUACCCUGCCAUGAUGACUGGAAAUACAGUCAGCAUUGACAAUUUUUGACAGUCUCUAUGGAGA hit 174 : 112704 112564 (rev) 93.66 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC A GGCAAUAU :+AGCCAG G G+U++ +C+GAGGC+: AUUAUUGC 77296 AGCUUUGCGC-AAUGGCAAUAUUUUAGCCAGGGCUGUUCA-UCUGAGGCAUGAUUAUUGC 77353 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUC CAA:++CC G C A:GA:GAC::G++AUA::GUC:GC:UUG C 77354 UAAUUGAAAACUUUUCACAAUACCCUGCC-AUGAUGACUGGAAAUACAGUCAGCAUUGAC 77412 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 77413 AAUUUUUGACAGUCUCUAuGGAGA 77436 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1180,sp|AC093286.3|AC093286 Homo sapiens chromosome 5 clone RP11-456A14, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCUCAGUGGCAGUAUUAUGACCAACGAGCUCCAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUUCCCAGUACGACUAUUGAAAUAUAGUUUAGAUUGGCAUUUUUUGGACAGUCUGUAUGGA hit 175 : 65939 66069 (fwd) 58.06 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAU :+ CCA+ GAG + ++ +C+GAGG +: AUUA:UGC 65939 AGCUUUGCUC-AGUGGCAGUAUUAUGACCAACGAGCUCCA-UCUGAGGCAUGAUUAUUGC 65996 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: UGAAAACU+UUCCCA :++ G:CUA:::: A A U++ U ::::UUG:C 65997 UAAUUGAAAACUUUUCCCAGUAC---GACUAUUGAAAUA--UAG-----UUUAGAUUGGC 66046 ,,,,,,,,,,.,,<<<<___>>>> 121 AAUUUUUGGA.AGcccuccaaggg 143 A UUUUUGGA AG:C::++ ::G: 66047 AUUUUUUGGAcAGUCUGUA-UGGA 66069 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1186,sp|AC093296.2|AC093296 Homo sapiens chromosome 5 clone RP11-536I7, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCUCAGUGGCAGUAUUAUGACCAACGAGCUCCAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUUCCCAGUACGACUAUUGAAAUAUAGUUUAGAUUGGCAUUUUUUGGACAGUCUGUAUGGA hit 176 : 156754 156624 (rev) 58.06 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAU :+ CCA+ GAG + ++ +C+GAGG +: AUUA:UGC 3680 AGCUUUGCUC-AGUGGCAGUAUUAUGACCAACGAGCUCCA-UCUGAGGCAUGAUUAUUGC 3737 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: UGAAAACU+UUCCCA :++ G:CUA:::: A A U++ U ::::UUG:C 3738 UAAUUGAAAACUUUUCCCAGUAC---GACUAUUGAAAUA--UAG-----UUUAGAUUGGC 3787 ,,,,,,,,,,.,,<<<<___>>>> 121 AAUUUUUGGA.AGcccuccaaggg 143 A UUUUUGGA AG:C::++ ::G: 3788 AUUUUUUGGAcAGUCUGUA-UGGA 3810 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1190,sp|AC093301.3|AC093301 Homo sapiens chromosome 5 clone RP11-565F4, complete sequence. ----isReversed: 1 ----hitSequence: AACUUCACAAAGAGGCAGUAUUACACCCACUGAGGUUUAUCCAAGGUAUGAUUCUUGCUAACUGAAAACUUUUCUCAAUGUCUCACCAUGAUGACUUGAAGUCUGAUAUUCGACUUUGGCAAUUUUUAACAAUCACUGUGG hit 177 : 118358 118218 (rev) 42.47 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUU C AG GGCA:UAU ::A CCA UGAGG+UU+ +CC AGG :: AUU :UGC 60188 AACUUCACAA-AGAGGCAGUAUUACACCCACUGAGGUUUA-UCCAAGGUAUGAUUCUUGC 60245 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<____...__>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguua...uauugucggcuu 116 UA::U:AAAACU+UU C:A:: + C :CC A+G :GA :UG+++ AU: UC: C+U 60246 UAACUGAAAACUUUUcUCAAUGUCUC-ACC-AUGAUGACUUGAAGucuGAUAUUCGACUU 60303 >>>>,,,,,,,,,,,,<<<<___>>>> 117 uggcAAUUUUUGGAAGcccuccaaggg 143 UGG:AAUUUUU + A :C::+ ::G: 60304 UGGCAAUUUUUAACAAUCACU--GUGG 60328 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2042,sp|AC097635.4|AC097635 Homo sapiens chromosome 3 clone RP11-263O21, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGAGGCAGUAUCAUAGCCAGUGAGGUUUAGCCACGUUGUGAUUAUUGCUAAUUGAAAACUUUUCCCCAUAGCUCACCGUGACGACUUGUAAUACAGCAAGCAUUAAAAAUAAAAUAAAUAUGACACA hit 178 : 138334 138470 (fwd) 57.55 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAUC:UA :CAGUGAGG+UU+ CC G: G:GAUUA:UGC 138334 AGCUUUGUGC-AGAGGCAGUAUCAUAGCCAGUGAGGUUUA-GCCACGUUGUGAUUAUUGC 138391 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U GAAAACU+UUCCC A:+GC C: ::GA C:+GU+AUA+:G GC::U : 138392 UAAUUGAAAACUUUUCCCCAUAGCUCACC-GUGACGACUUGUAAUACAGCAAGCAUUAAA 138450 ,,,,,,,,,,,,<<<<__.._>>>> 121 AAUUUUUGGAAGcccucc..aaggg 143 AAU +AA : ::++ A:: : 138451 AAU-----AAAAUAAAUAugACACA 138470 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2301,sp|AC099521.2|AC099521 Homo sapiens chromosome 16 clone RP11-71L14, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGAGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCAAGGCGUAAUUAUUGGUAGUUGAAACUCAAGAGUUGAGCCCCAUAAGAAUUCCAAUUUGCUUAAAGCAAAUGUAGGUUUUGUUUGCGUCUCCAUU hit 179 : 9689 9553 (rev) 29.11 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU UAGCCA+UGAGG+UU+ +CC AGGCG AUUA:UG 157557 AGCUUUGAGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCAAGGCGUAAUUAUUGG 157614 ,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA U::AA ACU ::A C+CC ::: : :A::: A: UU+ :U :::G: :+ 157615 UAGUUGAA-ACUCAAgagU-UGAGCCCC-AUA-AGAAUUCCAAUUUG--CUUAAAGCAAA 157668 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 :::A UUUUG G : +C : 157669 UGUAGGUUUUGUUUGCGUCUC-CAUU 157693 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2390,sp|AC099784.2|AC099784 Homo sapiens chromosome 1 clone RP11-159C21, complete sequence. ----isReversed: 1 ----hitSequence: AGCUCUGCAGUGGCAGUAUCAUAGCCCCUUAUCUAAGGCACGGUCAUUGCUAAUUGAGAACUAUUCCCAAUACCUCACCAUGAUGACUUGAAAUAUGGUCUGCAAUAGCAAUUUCUUUCUUUC hit 180 : 21296 21174 (rev) 32.28 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CU UGC AG GGCA:UA C:+AGCC CUU+ +C+ AGGC+:G U A:UGC 141872 AGCUCUGC---AGUGGCAGUAUCAUAGCCC------CUUA-UCUAAGGCACGGUCAUUGC 141921 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGA AACUAUUCCCAA:++C C:C ::GA:GAC UG++AUAU GUC:GC::U G: 141922 UAAUUGAGAACUAUUCCCAAUACCUCACC-AUGAUGACUUGAAAUAUGGUCUGCAAUAGC 141980 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUU+U C U+C 141981 AAUUUCU----UUCUUUC----- 141994 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2557,sp|AC103705.5|AC103705 Homo sapiens chromosome 8, clone RP11-55J15, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUCACCGAGGUGCGAUUAUUGCUAAUAGAAAGCCACAGAUGGUCCUGGAGACCAGAGCCAUCAAAACCCUUGUUCUUGUGCGGAAAAGAAGGCAAACCAGG hit 181 : 152648 152512 (rev) 39.24 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUA CCA+UGAGG+UU ACCGAGG GCGAUUA:UGC 41542 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUC-ACCGAGGUGCGAUUAUUGC 41599 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____.........__>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua.........uauuguc 111 UA:U :AAA C A C: A: G C ::+ AG C+A:A:+ + U :U:U+ 41600 UAAUAGAAAGCCA---CAGAUGGUC-CUGG-AGACCAGAGCCAUcaaaacccuUGUUCUU 41654 >>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 112 ggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 G +::AA GAAG C:: C ::G 41655 GU---GCGGAAAA----GAAGGCAAAC-CAGG 41678 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2715,sp|AC104070.3|AC104070 Homo sapiens BAC clone RP11-279K24 from 4, complete sequence. ----isReversed: 1 ----hitSequence: AGCUCUCUGCAGUGGCUGUAUCAUAGCCAAUGAGGUUUAUCCAAGGCAUGAUUAUUGCUAAUUGAAAAUGAGCAGCGCAAGGCAGUGGACCUUGUGAGGAGUUGAGAUAUUUUCACACACCUGGUG hit 182 : 14709 14584 (rev) 32.98 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CU U GC AG GGC :UAUC:+AGCCA+UGAGG+UU+ +CC AGGC+:GAUUA: GC 108583 AGCUCUCUGC-AGUGGCUGUAUCAUAGCCAAUGAGGUUUA-UCCAAGGCAUGAUUAUUGC 108640 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U::AAAA ::A: ::+::::A+ :: UG + U :: +G::::+:: 108641 UAAUUGAAAA-------UGAG-----CAGCGCAAGGCAGUGGACCUUGUGAGGAGUUGAG 108688 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 A UUUU + A C:C:+ :G:G 108689 AUAUUUUCACA-CACCU--GGUG 108708 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2782,sp|AC104185.2|AC104185 Homo sapiens chromosome 3 clone RP11-268J19, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUCACACAGUGGCAAUUGUUGUAGCCAAUGAGGUUUAUCUGAAGCACAAUUAUUGCUGAUUGAAAACUUUUCCCAGUACCCUGCUGUGAUGACUUUAAAUAUAGUUGGCAUUGGCAGUUUUUGAUAGUCUCCAAAGAGA hit 183 : 30852 30711 (rev) 82.23 bits :::::::::::::::::<<-.<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGCGCUAGGGGCaaU.aucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 A+CUU C C AG GGCAAU U:G+AGC A+UGAGG+UU+ +C+GA GC+C:A UAUUG 135067 AGCUUCACAC-AGUGGCAAUuGUUGUAGCCAAUGAGGUUUA-UCUGAAGCACAAUUAUUG 135124 ,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 60 CUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 CU+: UGAAAACU+UUCCCA :++CC GC: ::GA: AC:U ++AUAU:GU :GC::U:G 135125 CUGAUUGAAAACUUUUCCCAGUACCCUGCU-GUGAUGACUUUAAAUAUAGUUGGCAUUGG 135183 >,,,,,,,,,,,,<<<<__._>>>> 120 cAAUUUUUGGAAGcccucc.aaggg 143 CA UUUUUG+ AG:C::C+ A::G: 135184 CAGUUUUUGAUAGUCUCCAaAGAGA 135208 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2831,sp|AC104332.2|AC104332 Homo sapiens chromosome 1 clone RP11-330C7, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAGUGAGGUUUAUCCGAGGCGCAAUUAUUGCUAAUUGAAAUUAUGAUUUUCCUACUUUAUUUAGUAUUGGUAGAUCCUUCAUUAUUGAACUCAGACAUCC hit 184 : 95482 95356 (rev) 43.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAU GUAGCCAGUGAGG+UU+ +CCGAGGCGC AUUA:UGC 88357 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAGUGAGGUUUA-UCCGAGGCGCAAUUAUUGC 88414 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U::AAA UU ::A: : ::::: C :AU U++UAUU: +::::: : 88415 UAAUUGAAA----UUA-UGAU-----UUUCCUA-CUUUAUUUAGUAUUGGU-AGAUCCUU 88462 ,,,,,,,,,,...,,<<<<___>>>> 121 AAUUUUUGGA...AGcccuccaaggg 143 AUU UUG+A AG+C+UCC 88463 CAUUAUUGAAcucAGACAUCC----- 88483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3178,sp|AC105150.2|AC105150 Homo sapiens chromosome 8, clone RP11-328K2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUAAAGUUUAUCUGAGAUGUGAUUAUUGCCAGUUGAAAGCUUCUCCCACUACCCUGCCAUGACAACUUGCAGUAUAAUUGACACUGGCAAUCUUUUAUAGUCUCUAUGGAGA hit 185 : 584 444 (rev) 77.51 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUC:UA CA+U A G+UU+ +C+GAG G:GAUUA:UGC 200417 AGCUUUGCGC-AGUGGCAGUAUCAUAGCCAAUAAAGUUUA-UCUGAGAUGUGAUUAUUGC 200474 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 A: UGAAA CU+ UCCCA :++CC GCC :G C A :UG ++UAU: U G C: UGGC 200475 CAGUUGAAAGCUUCUCCCACUACCCUGCC-AUGACAACUUGCAGUAUAAUUGACACUGGC 200533 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAU UUU + AG:C::++ +::G: 200534 AAUCUUUUAUAGUCUCUAuGGAGA 200557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3843,sp|AC108130.3|AC108130 Homo sapiens chromosome 5 clone RP11-84B12, complete sequence. ----isReversed: 0 ----hitSequence: AACUUUGCACAGGGCAGUGUCACAACCAAUGAAGUUUAUCCAAAGUGCAAUUAUUGCUAAUUAAAAAAUUUUCCAAUGCCCCACCAUGACAGCUUAAAAUAUACUCAGCAUUGACAAAUUUUUCUCAUUUGGAGAAA hit 186 : 17066 17202 (fwd) 39.53 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUGC C AG GGCA:U U ::A:C A+UGA G+UU+ +CC A G::: A UA:UGC 17066 AACUUUGCAC-AG-GGCAGUGUCACAACCAAUGAAGUUUA-UCCAAAGUGCAAUUAUUGC 17122 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____.__>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua.uauugucggcuuugg 119 UA:UU AAAA U+UUC AA: GCCC :C:A:G :+A::U ++A UAU::U+:GC:U:G: 17123 UAAUUAAAAAAUUUUC-CAAU-GCCCCACCAUG-ACAGCUUAAAaUAUACUCAGCAUUGA 17179 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 AA UUUU ::: + ::: 17180 CAAAUUUUUCUCAUUUGGA-GAAA 17202 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3963,sp|AC108667.9|AC108667 Homo sapiens 3 BAC RP11-816B4 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGAGCGAUUACUGCUAAUUGAAAAAGAAAAUGCCUGCAGUUUAGAAGAUGGCUGAUAAAGAAACAGAUUCUGGAAUUAAAAAUUAAAACCUA hit 187 : 86959 86824 (rev) 46.34 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUA CCA+UGAGG+ U+ +CCGAGG GCGAUUA:UGC 43711 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUCUA-UCCGAGGAGCGAUUACUGC 43768 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU:AAAA A :AA: GCC G : ++ ::A :G+U+ : U::+ +: C 43769 UAAUUGAAAAAGA----AAAU-GCCUGCA-GU--UUAGAAGAUGGCUGAUAAAG--AAAC 43818 ,,,,,,,,,,,,<<<<__....._>>>> 121 AAUUUUUGGAAGcccucc.....aaggg 143 A UU+UGGAA :::: + A:::: 43819 AGAUUCUGGAAUUAAAAAuuaaaACCUA 43846 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4201,sp|AC109826.4|AC109826 Homo sapiens BAC clone RP11-764D5 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUAUGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCUGAGGUGUGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACUCCACCAUGAUGACUUGAAAUAUAGUCAGCAUUGGCAAUUUUUGACAGUCUGUACAGA hit 188 : 75347 75485 (fwd) 111.02 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUU GC AG GGCA:UAUC:UA CCA+UGAGG+UU+ +C+GAGG G:GAUUA:UGC 75347 AGCUUUAUGC-AGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCUGAGGUGUGAUUAUUGC 75404 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++ CC:CC A:GA:GAC:UG++AUAU:GUC:GC:UUGG: 75405 UAAUUGAAAACUUUUCCCAAUACUCCACC-AUGAUGACUUGAAAUAUAGUCAGCAUUGGC 75463 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ AG:C: ++ :G: 75464 AAUUUUUGACAGUCUGUA-CAGA 75485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4274,sp|AC110373.4|AC110373 Homo sapiens BAC clone RP11-548H18 from 4, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUACAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUAUUUCUUGCGAAAAUAGAAUAUAGCUAUAUCACUGACAUGGAUGCACAAGCUACUGUUUUAAAAUAAGUUUAUC hit 189 : 9980 10125 (fwd) 43.60 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG GGCA:UAUC:+AGCCA+UGAGG+UU+ +C+GAGGC+:GAUUA:UGC 9980 AGCUUUGUAC-AGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCUGAGGCAUGAUUAUUGC 10037 ,,<<<<_________..__......>>>>,,,,,<<<<<<<<<<<<<<______>>>>>> 61 UAgUugAAAACUAUU..CC......caAccgCCCgccuaagacgacauguuauauugucg 112 UA:UU:AAAACU+U C :AA:+G ::: :::A: CA +U A A UG : 10038 UAAUUGAAAACUUUAuuUCuugcgaAAAUAGAAUAUA-GCUAUAUCA-CUGACA-UGGAU 10094 >>.>>>>>>,,,,,,,,,,,,<<<<___>>>> 113 gc.uuuggcAAUUUUUGGAAGcccuccaaggg 143 G: ::+:::A U UUU +AA ::::+ :::: 10095 GCaCAAGCUACUGUUUUAAAAUAAGUU-UAUC 10125 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4666,sp|AC113370.2|AC113370 Homo sapiens chromosome 5 clone RP11-124O5, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCACAUUGGCAGUAUUAUAGCUAGAGGUUUAUUCAAGAAGUGAUUAUUGUUAAUUGAAAACUUUCCUGUUACCUCACCACGAUGACUUGUAAUAUAAUCAACAUUGGUAAUUUUUGAUAUUAUCCAAAAA hit 190 : 78211 78076 (rev) 51.19 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C A GGCA:UAU :UA :A GAGG+UU+ + C A: G: AUUA:UG 111380 AGCUUUGCAC-AUUGGCAGUAUUAUAGCUA--GAGGUUUA-UUCAAGAAGUGAUUAUUGU 111435 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: ::AAAACU UUCC:: :++C C:CC A:G :GA :UGU+AUAU: UC: C:UUGG: 111436 UAAUUGAAAACU-UUCCUGUUACCUCACC-ACGAUGACUUGUAAUAUAAUCAACAUUGGU 111493 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ A :::UCCAA::: 111494 AAUUUUUGAUA-UUAUCCAAAAA 111515 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #4707,sp|AC113425.2|AC113425 Homo sapiens chromosome 5 clone RP11-626B22, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAAAUUGAGGAAUAGUUUAGUAAAACACACAGAUCUUAAAUAUAUAAUUCAAUGGCUUUUUACAAAUAUCUAUCUGUAGCCAACAC hit 191 : 64018 64168 (fwd) 41.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAUC:UAGCCA+UGAGG+UU+ +CCGAGGCG:GAUUA:UGC 64018 AGCUUUGUGC-AGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCCGAGGCGUGAUUAUUGC 64075 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<____............... 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguua............... 104 UA:UU AAAA AUU AA:+G :::::A: ++ CA ++ 64076 UAAUUGAAAA--AUUgAGGAAUAGU--UUAGUAAAACACA--CAGaucuuaaauauauaa 64129 ...__>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 ...uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 A UG + :U:::::AAU U+U + ::::CCA:::: 64130 uucAA-UGGC-UUUUUACAAAUAUCU-AUCUGUAGCCAACAC 64168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5431,sp|AC119675.2|AC119675 Homo sapiens chromosome 1 clone RP4-731G4, complete sequence. ----isReversed: 1 ----hitSequence: AACUUAUGUAAGUAGCAGUAUUAUCAACAAUGAGGUUUAUCUGCGGCACAAUUCUCGCUCACUGAAAAAUCCCAACACCCAGCCAUGAAAACUUGCAAUAUAGUCGGCAUUGGCAACUUUUGACAGUCUCUAUGGAGA hit 192 : 36787 36650 (rev) 34.46 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A C UU G AG GC :UAU::+ :CA+UGAGG+UU+ +C+G G: +::AUU : GC 102153 AAC-UUAUGUAAGUAGCAGUAUUAUCAACAAUGAGGUUUA-UCUGCGGCACAAUUCUCGC 102210 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 U ::UGAAAA UCCCA::++CC GCC A:GA: AC:UG +AUAU:GU :GC:UUGGC 102211 UCACUGAAAA---AUCCCAACACCCAGCC-AUGAAAACUUGCAAUAUAGUCGGCAUUGGC 102266 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AA UUUUG+ AG:C::++ +::G: 102267 AACUUUUGACAGUCUCUAuGGAGA 102290 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5456,sp|AC119793.3|AC119793 Homo sapiens 12 BAC RP11-390F17 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: ACCCUGCACAGUAGUAGUAUCAUAGUCAAUGAGGUUUAUCCGAGGCACAAUUAUUGCUAAUUGAAGUCUUUUCACAAUAUCCUGCCAUGAUGACUUGAAAUAUAGUCAUAUAUUUCAAGUAUUGGUAAUUAUUGACAGUCUUUAAGGA hit 193 : 15706 15559 (rev) 45.01 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A C UGC C AG G A:UAU :+AG CA+UGAGG+UU+ +CCGAG C+: AUUA:UGC 57920 ACC-CUGCAC-AGUAGUAGUAUCAUAGUCAAUGAGGUUUA-UCCGAGGCACAAUUAUUGC 57976 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>...... 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggc...... 114 UA:UUGAA CU+UUC CAA:+ CC CC A: :GAC:UG++AUAU:GUC: 57977 UAAUUGAAGUCUUUUCACAAUAUCCUGCC-AUGAUGACUUGAAAUAUAGUCAUAuauuuc 58035 ....>>>>>>,,,,,,,,,,,,<<<<___>>>> 115 ....uuuggcAAUUUUUGGAAGcccuccaaggg 143 :UUGG AAUU UUG+ AG:C:U++ A:G: 58036 aaguAUUGGUAAUUAUUGACAGUCUUUA-AGGA 58067 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5500,sp|AC121161.2|AC121161 Homo sapiens BAC clone RP11-781M16 from 4, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUACCGUGGCAGUCUCAUAACCAAUGAGGUUUAUUCGAGGCGUGAUUACUGCUAAUUAAAAACUUUUUCCAAUACCCCAUCAUCAUGACUUGAAAUAUAGCUGGCAUAGGCAAUUUUUGACAGUCUCUAUGGAGA hit 194 : 2422 2562 (fwd) 80.97 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C G GGCA:U UC:UA CCA+UGAGG+UU+ + CGAGG G:GA UA:UGC 2422 AGCUUUGUAC-CGUGGCAGUCUCAUAACCAAUGAGGUUUA-UUCGAGGCGUGAUUACUGC 2479 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU AAAACU+UU C AA:++CCC::C A: A: C:UG++AUAU:G :G :U+G:: 2480 UAAUUAAAAACUUUUUCCAAUACCCCAUC-AUCAUGACUUGAAAUAUAGCUGGCAUAGGC 2538 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 2539 AAUUUUUGACAGUCUCUAuGGAGA 2562 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5596,sp|AC123595.1|AC123595 Homo sapiens chromosome 5 clone RP11-213H15, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGAGCAGUGGCAGUAUGGUAGCCAAUGCAGUUUAUCCAAUGUGCAAUUAUUAUUAAUUGAAAACUGUUCCCAAUACUUCACUGUAAUGACUUGCGAUAUAGUCAGUAUUGGCAAUUUUUUGUUUGUUUGUUUAAG hit 195 : 131881 131742 (rev) 51.42 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU GUA C A+UG G+UU+ +CC A G GC AUUA:U 42994 AGCUUUGAGC-AGUGGCAGUAUGGUAGCCAAUGCAGUUUA-UCCAAUGUGCAAUUAUUAU 43051 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU UUCCCAA:++ C:C: :::A:GAC:UG AUAU:GUC:G:::U:G: 43052 UAAUUGAAAACUGUUCCCAAUACUUCACU-GUAAUGACUUGCGAUAUAGUCAGUAUUGGC 43110 ,,,,,,,.,,,,,<<<<___>>>> 121 AAUUUUU.GGAAGcccuccaaggg 143 AAUUUUU G G::::+ :::: 43111 AAUUUUUuGUUUGUUUGUU-UAAG 43133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5735,sp|AC125289.1|AC125289 Homo sapiens chromosome 4 clone RP11-781M16, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUACCGUGGCAGUCUCAUAACCAAUGAGGUUUAUUCGAGGCGUGAUUACUGCUAAUUAAAAACUUUUUCCAAUACCCCAUCAUCAUGACUUGAAAUAUAGCUGGCAUAGGCAAUUUUUGACAGUCUCUAUGGAGA hit 196 : 2422 2562 (fwd) 80.97 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C G GGCA:U UC:UA CCA+UGAGG+UU+ + CGAGG G:GA UA:UGC 2422 AGCUUUGUAC-CGUGGCAGUCUCAUAACCAAUGAGGUUUA-UUCGAGGCGUGAUUACUGC 2479 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU AAAACU+UU C AA:++CCC::C A: A: C:UG++AUAU:G :G :U+G:: 2480 UAAUUAAAAACUUUUUCCAAUACCCCAUC-AUCAUGACUUGAAAUAUAGCUGGCAUAGGC 2538 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 2539 AAUUUUUGACAGUCUCUAuGGAGA 2562 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5770,sp|AC125612.7|AC125612 Homo sapiens 12 BAC RP11-117N2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGAGCAGUGAUAGUAUCAUACCCGAGGUUUAUCCAAGGCACAGUUAUUGCUAAUUGAAAAUUUUUCCCAAAUACCCCCACCAUGACAACUUGUGAUUAUAGUUGGCAUUGGCAAUUUUUGAGUUUCUGCAGAGA hit 197 : 108464 108602 (fwd) 60.64 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG G A:UA :+A CC GAGG+UU+ +CC AGG +: UUA:UGC 108464 AGCUUUGAGC-AGUGAUAGUAUCAUACCC---GAGGUUUA-UCCAAGGCACAGUUAUUGC 108518 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<____.__>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguua.uauugucggcuuug 118 UA:UU:AAAA U+UU CC:AA:++CCC :C:A:GAC AC:UGU A UAU:GU GGC:U:G 108519 UAAUUGAAAAUUUUUcCCAAAUACCCCCACCAUGACAACUUGUGAuUAUAGUUGGCAUUG 108578 >>,,,,,,,,,,,,<<<<___>>>> 119 gcAAUUUUUGGAAGcccuccaaggg 143 : AAUUUUUG+ :C: C+ :G: 108579 GCAAUUUUUGAGUUUCUGCA-GAGA 108602 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5872,sp|AC126773.2|AC126773 Homo sapiens chromosome 16 clone RP11-615I2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCUUAACCAAUGAGGUUUAUCUGAGGCACAAUUAUUGCUAAUUGAAAACUUUUCCCAACACUGCCAUAAUGACUUGAGCUAUACUAGGCAUUGGCAAUUUAAUUUUUGACAGUCUCUACGGAGA hit 198 : 29195 29338 (fwd) 77.93 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU :+A CCA+UGAGG+UU+ +C+GAGG +: AUUA:UGC 29195 AGCUUUGUGC-AGUGGCAGUAUCUUAACCAAUGAGGUUUA-UCUGAGGCACAAUUAUUGC 29252 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++ GCC A::A: A :UG+ UAU: U :G::UUGGC 29253 UAAUUGAAAACUUUUCCCAACACU--GCC-AUAAUGACUUGAGCUAUACUAGGCAUUGGC 29309 ,,,,.....,,,,,,,,<<<<__._>>>> 121 AAUU.....UUUGGAAGcccucc.aaggg 143 AAUU UUUG+ AG:C::++ +::G: 29310 AAUUuaauuUUUGACAGUCUCUAcGGAGA 29338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6106,sp|AC130456.2|AC130456 Homo sapiens chromosome 16 clone CTA-363E6, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCAGUGGCAGUACCGUAGCCAAUGAGAUUUAUCCGAGACGCGAUUAUUGCUAAUUGGAAAUUUUCCCAAUACCCCACCGUGAUGACUUGAAAUAUAAUCAGCGCUGGCAAUUUUUGACAGUCUCUACGGAGA hit 199 : 213032 213169 (fwd) 80.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC AG GGCA:UA CGUAG CA+UGAG +UU+ +CCGAG CGCG UUA:UGC 213032 AGCUUUGC---AGUGGCAGUACCGUAGCCAAUGAGAUUUA-UCCGAGACGCGAUUAUUGC 213087 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUG AAA U+UUCCCAA:++CCC:CC : GA:GA :UG++AUAU: UC:GC :UGG: 213088 UAAUUGGAAA-UUUUCCCAAUACCCCACC-GUGAUGACUUGAAAUAUAAUCAGCGCUGGC 213145 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 213146 AAUUUUUGACAGUCUCUAcGGAGA 213169 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6308,sp|AC133330.2|AC133330 Homo sapiens chromosome 8 clone RP11-139A3 map 8q24.2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGUGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAACAAAAUGGAAGACAGGUGACUUUUCCCCUCCCUUGAAUAAACACUUCUUCCACACAUGGAUUUC hit 200 : 150510 150380 (rev) 36.40 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCG +G GGCA:UAUC:UAGCCA+UGAGG+UU+ +CCGAGGCG:GAUUA:UGC 14448 AGCUUUGCG--UGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCCGAGGCGUGAUUAUUGC 14504 ,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA:U::AAAAC A ::A:+G G: ::: :: U :: ::: 14505 UAAUUGAAAACAAAAuggA-AGACAG---GUGACUU-UUCCC--CUCCC-UUGA---AUA 14553 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 :CA UU UU A ::: + ::: 14554 AACACUUCUUCCACACAUGGA-UUUC 14578 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6356,sp|AC133750.2|AC133750 Homo sapiens 3 BAC RP11-619K22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: CACUUCAUGCCUUUGGUGGUAUUGUAGCCAAUGAGGUUUAUCCGAGGUGUGAUUAUUGCUAAUUGAAAACUUCCCAACACUCCGCCAUGACGACUUGCAAUAUAGUAGGCAUUGGCAAAAAAAAAAAAA hit 201 : 27012 26884 (rev) 50.37 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 CUU GC++ GG ::UAU UA CCA+UGAGG+UU+ +CCGAGG G AUUA::GC 60375 CACUUCAUGCCUUUGGUGGUAUUGUAGCCAAUGAGGUUUA-UCCGAGGUGUGAUUAUUGC 60433 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU UCCCAA:++ CCGCC A:GAC AC:UG +AUAU:GU GGC:UUGGC 60434 UAAUUGAAAACU--UCCCAACACUCCGCC-AUGACGACUUGCAAUAUAGUAGGCAUUGGC 60490 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA +AA + ++ A 60491 AAAA----AAAAAAAA--A---- 60503 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #7055,sp|AC144525.3|AC144525 Homo sapiens BAC clone CTC-833E13 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGUAAUAUCAUAGCCCAUGAGGUUUAUCUGAGGCGCGAUUAUUGCUAAUUAAAAGCUUCCCCACAAUAAUAAUAGUGUAAAAUGUGGGAUGAGUAAAUUAGAAAUGUGCCUAAC hit 202 : 30675 30801 (fwd) 39.30 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GG AAUAUC:UAGCC +UGAGG+UU+ +C+GAGGCG:GAUUAUUGC 30675 AGCUUUGCAC-AGUGGUAAUAUCAUAGCCCAUGAGGUUUA-UCUGAGGCGCGAUUAUUGC 30732 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U AAA CU+ CC A: :::U : : UGU+A AU : :+ U::: 30733 UAAUUAAAAGCUUCCCCACAA-----UAAU----AAUAGUGUAAAAUGUGGGA---UGAG 30780 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 A UU G+AA : ::CC :: : 30781 UAAAUUAGAAA-UGUGCC-UAAC 30801 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #7094,sp|AC144897.2|AC144897 Homo sapiens BAC clone CTD-2384O13 from 4, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGUAGUGGCAGUAUCAUAGCCAAUAAGGCUUUAUCUAAGGCAUAACUAUUGCUAAUUAAAUAAUUUUGAAUAAAGAAUAAAAGAACAGAUCUAUUUCUCUAUGUAUCUAUAUGGUCACAAAGUAUGUUUCUG hit 203 : 2596 2458 (rev) 21.76 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG G AG GGCA:U U :+AGCCA+U AGGCUUUA+C+ AGGC+: A UA:UGC 6284 AGCUUUGUGU-AGUGGCAGUAUCAUAGCCAAUAAGGCUUUAUCUAAGGCAUAACUAUUGC 6342 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>> 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcuuug 118 UA:UU AA A U+UU AA:+ ::: A A: A:A++U+ U +U:U :G U : 6343 UAAUUAAAUAAUUUUgaAUAAAGAA---UAA-AAGAACAGAUCUAUUUCUCUAUGUAUCU 6398 >>,,,,,,,,,,,,<<<<___>>>> 119 gcAAUUUUUGGAAGcccuccaaggg 143 ::A U+ +AAG::::+ :::: 6399 AUAUGGUCACAAAGUAUGUU-UCUG 6422 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #7795,sp|AF196779.1|AF196779 Homo sapiens transcription factor IGHM enhancer 3, JM11 protein, JM4 protein, JM5 protein, T54 protein, JM10 protein, A4 differentiation-dependent protein, triple LIM domain protein 6, and synaptophysin genes, complete cds; and L-type calcium channel alpha-1 subunit gene, partial cds, complete sequence. ----isReversed: 0 ----hitSequence: UGCUUUUUGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUAGCCAAGGUGUGGAUAUUGCUAAUUGGAAACUUCCCAAUACCCCGCCCCGAAGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUAUGAAGA hit 204 : 52021 52157 (fwd) 77.60 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 +CUUU GC AG GGCA:U C:UA CCA+UGAGG+UU+ CC AGG G:G UA:UGC 52021 UGCUUUUUGC-AGUGGCAGUAUCAUAGCCAAUGAGGUUUA-GCCAAGGUGUGGAUAUUGC 52078 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUG AAACU UCCCAA:++CCCGCC ::GA:GAC:UG +AUAU:GUC:GC::UGGC 52079 UAAUUGGAAACU--UCCCAAUACCCCGCC-CCGAAGACUUGCAAUAUAGUCGGCAUUGGC 52135 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ AG:C: + + :G: 52136 AAUUUUUGACAGUCUAU-GAAGA 52157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----sequence: #1733,sp|AF254981.4|AF254981 Homo sapiens chromosome 8 clone RP11-429D14 map 8q24.2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGUGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAACAAAAUGGAAGACAGGUGACUUUUCCCCUCCCUUGAAUAAACACUUCUUCCACACAUGGAUUUC hit 205 : 104674 104544 (rev) 36.40 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCG +G GGCA:UAUC:UAGCCA+UGAGG+UU+ +CCGAGGCG:GAUUA:UGC 97469 AGCUUUGCG--UGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCCGAGGCGUGAUUAUUGC 97525 ,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA:U::AAAAC A ::A:+G G: ::: :: U :: ::: 97526 UAAUUGAAAACAAAAuggA-AGACAG---GUGACUU-UUCCC--CUCCC-UUGA---AUA 97574 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 :CA UU UU A ::: + ::: 97575 AACACUUCUUCCACACAUGGA-UUUC 97599 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----sequence: #2624,sp|AF267168.3|AF267168 Homo sapiens chromosome 8 clone RP11-134N2, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGCGUGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAACAAAAUGGAAGACAGGUGACUUUUCCCCUCCCUUGAAUAAACACUUCUUCCACACAUGGAUUUC hit 206 : 166510 166380 (rev) 36.40 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCG +G GGCA:UAUC:UAGCCA+UGAGG+UU+ +CCGAGGCG:GAUUA:UGC 14448 AGCUUUGCG--UGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCCGAGGCGUGAUUAUUGC 14504 ,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA:U::AAAAC A ::A:+G G: ::: :: U :: ::: 14505 UAAUUGAAAACAAAAuggA-AGACAG---GUGACUU-UUCCC--CUCCC-UUGA---AUA 14553 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 :CA UU UU A ::: + ::: 14554 AACACUUCUUCCACACAUGGA-UUUC 14578 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----sequence: #5416,sp|AF512556.1|AF512556 Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2) gene, complete cds. ----isReversed: 0 ----hitSequence: AGUUUUGCAGUGGCAGUGUGAUGACCAAUGAGGUUUAUCUGAGGUGCGAUUAUUGCUAAUUGAAGCAGUGCCCUGGAGGUACUAGAAUUCCUUAUCAGUUUCAUACAAUUUCAGGGCUUGAUUUUUUA hit 207 : 14152 14279 (fwd) 12.48 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUGC AG GGCA:U U :U :CCA+UGAGG+UU+ +C+GAGG:G: A UA:UGC 14152 AGUUUUGC---AGUGGCAGUGUGAUGACCAAUGAGGUUUA-UCUGAGGUGCGAUUAUUGC 14207 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 UA: GA A A U CCC :+G G:: :+ + A::++ U +::U +:+:: 14208 UAAUUGA--AGCAGUgCCCUGGAG---GUA-CU--AGAAUUCCUUAUCAGUU---UCAUA 14256 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 CAAUUU+ GG : : + : : 14257 CAAUUUCAGGGCUUGAUUU-UUUA 14279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----sequence: #1600,sp|AK023655.1|AK023655 Homo sapiens cDNA FLJ13593 fis, clone PLACE1009493. ----isReversed: 0 ----hitSequence: AGCUUUGCAGUGGCAGUACCGUAGCCAAUGAGAUUUAUCCGAGACGCGAUUAUUGCUAAUUGGAAAUUUUCCCAAUACCCCACCGUGAUGACUUGAAAUAUAAUCAGCGCUGGCAAUUUUUGACAGUCUCUACGGAGA hit 208 : 1667 1804 (fwd) 80.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC AG GGCA:UA CGUAG CA+UGAG +UU+ +CCGAG CGCG UUA:UGC 1667 AGCUUUGC---AGUGGCAGUACCGUAGCCAAUGAGAUUUA-UCCGAGACGCGAUUAUUGC 1722 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUG AAA U+UUCCCAA:++CCC:CC : GA:GA :UG++AUAU: UC:GC :UGG: 1723 UAAUUGGAAA-UUUUCCCAAUACCCCACC-GUGAUGACUUGAAAUAUAAUCAGCGCUGGC 1780 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 1781 AAUUUUUGACAGUCUCUAcGGAGA 1804 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----sequence: #2754,sp|AK024809.1|AK024809 Homo sapiens cDNA: FLJ21156 fis, clone CAS09878. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 209 : 1 141 (fwd) 130.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 1 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 58 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC A:GACGAC:UG++AUAU:GUCGGC:UUGGC 59 UAAUUGAAAACUUUUCCCAAUACCCCGCC-AUGACGACUUGAAAUAUAGUCGGCAUUGGC 117 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 118 AAUUUUUGACAGUCUCUAcGGAGA 141 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----sequence: #9706,sp|AK074255.1|AK074255 Homo sapiens cDNA FLJ23675 fis, clone HEP08462. ----isReversed: 1 ----hitSequence: AGCUUUGUACAGUGGAAAUAUGGUAGCCAAUGAGGUUUAUCCUAGGUUAUUGCUAAUUGAAAACUUUUUCCAAUACCCUGCCAUGACAACUUGCAAGAUAGUCAGCACUGGCAAUUUUUGACAGUCACUAUGGC hit 210 : 1857 1724 (rev) 70.98 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG GG AAUAU GUA CCA+UGAGG+UU+ +CC AGG UAUUGC 706 AGCUUUGUAC-AGUGGAAAUAUGGUAGCCAAUGAGGUUUA-UCCUAGGU-----UAUUGC 758 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UU CCAA:++CC GCC :GA AC:UG +A AU:GU GC: UGGC 759 UAAUUGAAAACUUUUUCCAAUACCCUGCC-AUGACAACUUGCAAGAUAGUCAGCACUGGC 817 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ A : C C A G : 818 AAUUUUUGACA-GUCACUAUGGC 839 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #4557,sp|AK093944.1|AK093944 Homo sapiens cDNA FLJ36625 fis, clone TRACH2017368, weakly similar to Homo sapiens mRNA for LAK-4p. ----isReversed: 0 ----hitSequence: AGCUUUGCAGUGGCAGUACCGUAGCCAAUGAGAUUUAUCCGAGACGCGAUUAUUGCUAAUUGGAAAUUUUCCCAAUACCCCACCGUGAUGACUUGAAAUAUAAUCAGCGCUGGCAAUUUUUGACAGUCUCUACGGAGA hit 211 : 2241 2378 (fwd) 80.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC AG GGCA:UA CGUAG CA+UGAG +UU+ +CCGAG CGCG UUA:UGC 2241 AGCUUUGC---AGUGGCAGUACCGUAGCCAAUGAGAUUUA-UCCGAGACGCGAUUAUUGC 2296 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUG AAA U+UUCCCAA:++CCC:CC : GA:GA :UG++AUAU: UC:GC :UGG: 2297 UAAUUGGAAA-UUUUCCCAAUACCCCACC-GUGAUGACUUGAAAUAUAAUCAGCGCUGGC 2354 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 2355 AAUUUUUGACAGUCUCUAcGGAGA 2378 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #9508,sp|AL133332.12|AL133332 Human DNA sequence from clone RP5-846D11 on chromosome 1 Contains part of EVI5 (ecotropic viral integration site 5), ESTs, STSs, GSSs and a CpG Island. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAGUGAGGUUUAUCCGAGGCGCAAUUAUUGCUAAUUGAAAUUAUGAUUUUCCUACUUUAUUUAGUAUUGGUAGAUCCUUCAUUAUUGAACUCAGACAUCC hit 212 : 21171 21045 (rev) 43.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAU GUAGCCAGUGAGG+UU+ +CCGAGGCGC AUUA:UGC 130930 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAGUGAGGUUUA-UCCGAGGCGCAAUUAUUGC 130987 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U::AAA UU ::A: : ::::: C :AU U++UAUU: +::::: : 130988 UAAUUGAAA----UUA-UGAU-----UUUCCUA-CUUUAUUUAGUAUUGGU-AGAUCCUU 131035 ,,,,,,,,,,...,,<<<<___>>>> 121 AAUUUUUGGA...AGcccuccaaggg 143 AUU UUG+A AG+C+UCC 131036 CAUUAUUGAAcucAGACAUCC----- 131056 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #9644,sp|AL135904.11|AL135904 Human DNA sequence from clone RP5-1005H11 on chromosome 6 Contains part of the gene for a 7 transmembrane receptor (rhodopsin family) (olfactory receptor like) protein, the gene for WUGSC:H_DJ0988G15.3 protein, part of the PDNP3 (phosphodiesterase I/nucleotide pyrophosphatase 3) gene, ESTs, STSs and GSSs. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAUUGGCAGUAUAGUAGCCAAUGAGGUUUAUUUGAGGUAUGAUUAUUGCUCAUAAAAAUUUUACAAAGGCAAAAAUAGGGUGAGGGUGCUGGGCACAGUGUCUCACACCAGCAAUCCCAAUGCUUAAAAGAAGCCAAGGCA hit 213 : 940 791 (rev) 24.86 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC A GGCA:UAU +A CCA+UGAGG+UU+ + +GAGG + AUUA:UGC 58191 AGCUUUGUGC-AUUGGCAGUAUAGUAGCCAAUGAGGUUUA-UUUGAGGUAUGAUUAUUGC 58248 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____.............__> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua.............uau 107 U :U AAAA U+UU C A:+G C ::: ::::+G:: :G U+ : 58249 UCAU--AAAAAUUUUAC--AAAGGCAAAA-AUAGGGUGAGGGUGcugggcacaguguCUC 58303 >>>>>>>.>>>>>>,,,,,,,,,,,,<<<<___>>>> 108 ugucggc.uuuggcAAUUUUUGGAAGcccuccaaggg 143 ::C+:: ::U:::AAU UU +AAG: :C+A: : 58304 ACACCAGcAAUCCCAAUGCUUAAAAGAAGCCAAGGCA 58340 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4,sp|AL137847.12|AL137847 Human DNA sequence from clone RP11-439K3 on chromosome 9q22.2-31.1 ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUAUUGUAGCCAGUGAGGUUCAUCCGAGGCACAAUUAUUGGCUAAUUAAACUAUCUCACUGACCAAGGCUACCUAUAACUCAUAUAAACAAAGUGUUUUUCCUUUAUCUUGGUUGAACCUAGGGCU hit 214 : 107831 107973 (fwd) 35.55 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,. 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG. 59 A+CUUUGC C AG GGCA:UAU:G+AGCCAGUGAGG+U++ +CCGAGGC+C:AUUA:UG 107831 AGCUUUGCAC-AGUGGCAGUAUUGUAGCCAGUGAGGUUCA-UCCGAGGCACAAUUAUUGg 107888 ,,,<<<<_________.......__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>> 60 CUAgUugAAAACUAUU.......CCcaAccgCCCgccuaagacgacauguuauauugucg 112 CUA:UU AAACUAU CC AA: + C ::UAA :C :: ++A A :: G 107889 CUAAUU--AAACUAUCucacugaCC-AAGGCUACCUAUAACUCAUAU--AAACA-AAGUG 107942 >>>>>>>>,,,,,,,,,,,,<<<<___>>>> 113 gcuuuggcAAUUUUUGGAAGcccuccaaggg 143 : UUU:: U UUGG G: C:+++:G : 107943 UUUUUCCUUUAUCUUGGUUGAACCUAGGGCU 107973 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #264,sp|AL139098.15|AL139098 Human DNA sequence from clone RP1-276J11 on chromosome 6 ----isReversed: 1 ----hitSequence: GGCUUUGCACAGUGGCAUGAUCGUAGUCAAUGAGGUUUAUCCAGGGUGCGAUUACUGCUAAUUGAAAAUUUUUCCCAAUACUCCACCAUGAUGACCAGAAAUAUAGUUGGCAUUGACAAUUUUUGACAGUCUCUGCAGA hit 215 : 120279 120141 (rev) 74.25 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 +CUUUGC C AG GGCA AUCGUA CA+UGAGG+UU+ +CC G GCGAUUA UGC 11223 GGCUUUGCAC-AGUGGCAUGAUCGUAGUCAAUGAGGUUUA-UCCAGGGUGCGAUUACUGC 11280 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAA U+UUCCCAA:++ CC: C A:GA: AC::G++AUA::GU :GC:UUG : 11281 UAAUUGAAAAUUUUUCCCAAUACUCCACC-AUGAUGACCAGAAAUAUAGUUGGCAUUGAC 11339 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ AG:C: + + :G: 11340 AAUUUUUGACAGUCUCU-GCAGA 11361 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #287,sp|AL139128.24|AL139128 Human DNA sequence from clone RP11-101O6 on chromosome 1 ----isReversed: 0 ----hitSequence: AGCUUUGUACAGUGACAGGAUUAUAGCCAAUGAGGCAUGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCUGGCAUUGGCAAUUUUUGACAAUCUCUAUGGAGA hit 216 : 130794 130899 (fwd) 31.98 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG G CA: AU :+AGCCA A +GAGGC+: AUUA:UGC 130794 AGCUUUGUAC-AGUGACAGGAUUAUAGCCA----------A--UGAGGCAUGAUUAUUGC 130840 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CC G C UU+ G C 130841 UAAUUGAAAACUUUUCCCAAUACCCUGGCA-----------UUG-------------G-C 130875 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ A :C::++ +::G: 130876 AAUUUUUGACAAUCUCUAuGGAGA 130899 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #363,sp|AL139281.7|AL139281 Human DNA sequence from clone RP11-215C7 on chromosome 10 ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCAAUAUUGCAGCCAAUAAGGUUUAUCUGAGGUGCAAUUAUUGCCAGUCAAAGGGCCAAAUUAGCCAAGAUUAUUGCUAAUCUUCACCAAACAAGUUAUUCCAAGCUCCGAAAGUACUUUACAAGGUUGAGUA hit 217 : 139791 139645 (rev) 23.54 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCAAUAU:G:A CCA+U AGG+UU+ +C+GAGG :C:AUUAUUGC 36993 AGCUUUGCAC-AGUGGCAAUAUUGCAGCCAAUAAGGUUUA-UCUGAGGUGCAAUUAUUGC 37050 ,,<<<<_......__________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>> 61 UAgUugA......AAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggc 114 A:U: A AAA UA C :A: :+:: ::C:: + +A ::G:: 37051 CAGUCAAagggccAAAUUAGCCAAGAUUA---UUGCUAAUCUUCA-CCAA---ACAAGUU 37103 >>>>>>,,,,,,,,,,,,<<<<__........_>>>> 115 uuuggcAAUUUUUGGAAGcccucc........aaggg 143 ::+: AA U+ G+AAG::CU+ +AG:: 37104 AUUCC-AAGCUCCGAAAGUACUUUacaagguuGAGUA 37139 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #425,sp|AL139398.20|AL139398 Human DNA sequence from clone RP11-528B10 on chromosome Xp11.21-11.23 ----isReversed: 0 ----hitSequence: AGCUUUGCUCAGUGGUGGCACUGUAGCAGCCAAUAAGGUUUAUCUGAGGCGCCAUUAUUGCUAAUUGAAAACUUUGCUCAGUACCCCAUCGUGAAGACUUGCCAUAGAGUCAGCAUUGGCAAUUUUUGACAAUUUCUAUGGAGA hit 218 : 73291 73434 (fwd) 66.32 bits :::::::::::::...::::<<-<<<<<-<<<_________________>>>>>>>>--> 1 AuCUUUGCGCUAG...GGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAu 57 A+CUUUGC C AG GGCA:U U G:AGCCA+U AGG+UU+ +C+GAGGC:C A UA: 73291 AGCUUUGCUC-AGuggUGGCACUGUAGCAGCCAAUAAGGUUUA-UCUGAGGCGCCAUUAU 73348 >,,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 58 uGCUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UGCUA: UGAAAACU+U C CA :++CCC::C ::GA:GAC: G AUA :GUC:GC::U 73349 UGCUAAUUGAAAACUUUGCUCAGUACCCCAUC-GUGAAGACUUGCCAUAGAGUCAGCAUU 73407 >>>,,,,,,,,,,,,<<<<__._>>>> 118 ggcAAUUUUUGGAAGcccucc.aaggg 143 G::AAUUUUUG+ A : ::++ +:: : 73408 GGCAAUUUUUGACAAUUUCUAuGGAGA 73434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #723,sp|AL158191.17|AL158191 Human DNA sequence from clone RP11-309H15 on chromosome 13 ----isReversed: 0 ----hitSequence: AGCUUCAUGCAGUGACAGUAUUGUAGCCAAUGAGGUUUAUCCAGGAGUAAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCUGGCCGUGACAACUUGCAAUAUAGUUGGCAUUGGCAAUUUUUGACAGUCUCUAUGGAGA hit 219 : 56773 56912 (fwd) 91.67 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUU GC AG G CA:UAU: UA CCA+UGAGG+UU+ +CC AGG G :AUUA:UGC 56773 AGCUUCAUGC-AGUGACAGUAUUGUAGCCAAUGAGGUUUA-UCC-AGGAGUAAUUAUUGC 56829 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++C GCC ::GAC AC:UG +AUAU:GU GGC::UGGC 56830 UAAUUGAAAACUUUUCCCAAUACCUGGCC-GUGACAACUUGCAAUAUAGUUGGCAUUGGC 56888 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 56889 AAUUUUUGACAGUCUCUAuGGAGA 56912 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #761,sp|AL158830.17|AL158830 Human DNA sequence from clone RP11-421H8 on chromosome 9 Contains the 3' end of the RECK gene for reversion-inducing-cysteine-rich protein with kazal motifs (suppression of tumorigenicity 5, suppression of tumorigenicity 15, ST15), a gene for 17kD fetal brain protein, the CCIN gene for calicin, the CLTA gene for clathrin, light polypeptide (Lca), the gene for UDP-N-acetylglucosamine 2-epimerase and CpG islands. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCAAGGUGCGAUUAUUGCUAAUUGAAAGUAUCAUACUGUAAACCAGGCUGAGUGCAGUGGCUCAUGCCUGUCUUCCCAACACUUUUGUGAUCAUUUGAGU hit 220 : 169286 169425 (fwd) 38.55 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAUCGUA CCA+UGAGG+UU+ +CC AGG GCGAUUA:UGC 169286 AGCUUUGUGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCAAGGUGCGAUUAUUGC 169343 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>> 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcuuug 118 UA: ::AA A UAU C:: :+ CC :AG:++ : :G U A: : ++:CU: 169344 UAAUUGAA-AGUAUCauACUGUAAACCAGGCUGAGUGCAGUGGCUC-AUGCCUGUCUUCC 169401 >>,.,,,,,,,,,,,<<<<___>>>> 119 gcA.AUUUUUGGAAGcccuccaaggg 143 A A UUUUG A :C::+ ::G: 169402 CAAcACUUUUGUGA-UCAUUU-GAGU 169425 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #956,sp|AL161613.23|AL161613 Human DNA sequence from clone RP11-22J15 on chromosome 13 ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCAGUGUCAUAGCCAAUGAAGUUUGUCCAAGGUGCGAUUAUUGCUAAUUGGAAACUUUCCAAUACCCCACCAUAACAACUUGAAAUGUAGUCAGCACUGGCGAUUUUUGACAGUCUCUACAGAGA hit 221 : 12903 12765 (rev) 68.45 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:U UC:UA CCA+UGA G+UU +CC AGG G:GA UA:UGC 100470 AGCUUUGCAC-AGUGGCAGUGUCAUAGCCAAUGAAGUUU-GUCCAAGGUGCGAUUAUUGC 100527 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUG AAACU+U CCAA:++CCC:CC ::A AC:UG++AU U:GU G:: UGG: 100528 UAAUUGGAAACUUU--CCAAUACCCCACC-AUAACAACUUGAAAUGUAGUCAGCACUGGC 100584 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AUUUUUG+ AG:C::++ A::G: 100585 GAUUUUUGACAGUCUCUAcAGAGA 100608 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1635,sp|AL354920.21|AL354920 Human DNA sequence from clone RP11-522I20 on chromosome 9 ----isReversed: 1 ----hitSequence: AACUUUGUGCAGUGGCAGUAUCAUAGCCAGUGAGGUUUGUCUGAGGCACGAUUAUUGAUAAUUGAAAACUAUUCCCAAUACCUUACCAGGAUGAUUUGGCAUAUAGUUGGCAUUGGCAAUUUUUGACUUGGCAAAAU hit 222 : 25885 25749 (rev) 76.67 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUG GC AG GGCA:UAUC:+AGCCAGUGAGG+UU +C+GAGGC+:GAUUA:UG 142920 AACUUUGUGC-AGUGGCAGUAUCAUAGCCAGUGAGGUUU-GUCUGAGGCACGAUUAUUGA 142977 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACUAUUCCCAA:++C :CC A GA: A::UG AUAU::U :GC UUGG: 142978 UAAUUGAAAACUAUUCCCAAUACCUUACC-AGGAUGAUUUGGCAUAUAGUUGGCAUUGGC 143036 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ ::: CA::: 143037 AAUUUUUGA---CUUGGCAAAAU 143056 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1639,sp|AL354928.9|AL354928 Human DNA sequence from clone RP11-175D17 on chromosome 9 ----isReversed: 1 ----hitSequence: AGCUUUGCAGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAAAAAAAAUACACACAGGAAAGUGUACAAAACAAAUGUGUGUCUCAGUGAAUUAACAGAAAGCAGACCCAUG hit 223 : 147417 147279 (rev) 47.72 bits ::::::::.:::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGC.GCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 A+CUUUGC GC AG GGCA:UAUCGUAGCCA+UGAGG+ U+ +CCGAGGCGCGAUUA:UG 29123 AGCUUUGCaGC-AGUGGCAGUAUCGUAGCCAAUGAGGUCUA-UCCGAGGCGCGAUUAUUG 29180 ,,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 60 CUAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 CUA:U :AAAA A C: A:+G ::::+G:+:A:A:+++A :U:U: :C+:: 29181 CUAAUUGAAAAAAAAAauACACACAG---GAAAGUGUACAAAACAAA-UGUGUG-UCUCA 29235 >>>,,,,.,,,,,,,,<<<<___>>>> 118 ggcAAUU.UUUGGAAGcccuccaaggg 143 :: AAUU + G+AAGC: :CC : :G 29236 GUGAAUUaACAGAAAGCAGACC-CAUG 29261 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1659,sp|AL354951.7|AL354951 Human DNA sequence from clone RP11-451M19 on chromosome 10 ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUUGUAGCCAAUGAGGUCUAUCCGAGGCGUGAUUAUUGCUAAUAGAAACAGGAAAAUUUUUUUAAUAAAUCCUCACCUUGGUCUUCACAGGAACCACAAGGACAACAUUCUCAAUGCGAAUU hit 224 : 82518 82658 (fwd) 31.08 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAU UAGCCA+UGAGG+ U+ +CCGAGGCG AUUA:UGC 82518 AGCUUUGCGC-AGUGGCAGUAUUGUAGCCAAUGAGGUCUA-UCCGAGGCGUGAUUAUUGC 82575 ,,<<<<_.......________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>> 61 UAgUugA.......AAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucg 112 UA:U :A AAA U+UU : A:+ CC :C: :G::+::: ++ :::+: 82576 UAAUAGAaacaggaAAAUUUUUuUAAUAAAUCCUCACCUUGGUCUUCA-CAG---GAACC 82631 >>>>>>>>,,.,,,,,,,,,,<<<<___>>>> 113 gcuuuggcAA.UUUUUGGAAGcccuccaaggg 143 :C: :G: AA UU+U +A GC++++ 82632 ACAAGGACAAcAUUCUCAAUGCGAAUU----- 82658 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1697,sp|AL355143.17|AL355143 Human DNA sequence from clone RP11-304C16 on chromosome 6 ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGGAGUAUGGUAGCCAGUGAGGUUUAUUCCAGGUGCAAUUAUUGCUAAUUGAUAACGUUUCCCAAUAUCCCACCAUGACAACUUGAAACAUAGUCGGUAUUGGCAAUUUUUGACAGUCUCUAGUGA hit 225 : 19385 19247 (rev) 83.95 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GG A:UAU GUA CCAGUGAGG+UU+ + C AGG GC AUUA:UGC 43196 AGCUUUGCAC-AGUGGGAGUAUGGUAGCCAGUGAGGUUUA-UUCCAGGUGCAAUUAUUGC 43253 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGA AAC +UUCCCAA:+ CCC:CC A: AC AC:UG++A AU:GU GG :UUGG: 43254 UAAUUGAUAACGUUUCCCAAUAUCCCACC-AUGACAACUUGAAACAUAGUCGGUAUUGGC 43312 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ AG:C::++ ::G: 43313 AAUUUUUGACAGUCUCUA-GUGA 43334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1703,sp|AL355150.11|AL355150 Human DNA sequence from clone RP11-380K21 on chromosome 6 ----isReversed: 1 ----hitSequence: AGCUUUGUGCAUUGGCAGUAUAGUAGCCAAUGAGGUUUAUUUGAGGUAUGAUUAUUGCUCAUAAAAAUUUUACAAAGGCAAAAAUAGGGUGAGGGUGCUGGGCACAGUGUCUCACACCAGCAAUCCCAAUGCUUAAAAGAAGCCAAGGCA hit 226 : 935 786 (rev) 24.86 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC A GGCA:UAU +A CCA+UGAGG+UU+ + +GAGG + AUUA:UGC 19219 AGCUUUGUGC-AUUGGCAGUAUAGUAGCCAAUGAGGUUUA-UUUGAGGUAUGAUUAUUGC 19276 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____.............__> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua.............uau 107 U :U AAAA U+UU C A:+G C ::: ::::+G:: :G U+ : 19277 UCAU--AAAAAUUUUAC--AAAGGCAAAA-AUAGGGUGAGGGUGcugggcacaguguCUC 19331 >>>>>>>.>>>>>>,,,,,,,,,,,,<<<<___>>>> 108 ugucggc.uuuggcAAUUUUUGGAAGcccuccaaggg 143 ::C+:: ::U:::AAU UU +AAG: :C+A: : 19332 ACACCAGcAAUCCCAAUGCUUAAAAGAAGCCAAGGCA 19368 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1858,sp|AL355615.12|AL355615 Human DNA sequence from clone RP11-33E24 on chromosome 6 ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUAGUGUAGCUAGUGAGGUUUAUCCGAGGUGCAGUUAUUGCUAAUUAAAAACUUUUUGUCACCAUUCCAAGAUGGCUGAAUAGGAACAGCUCUGGUCUACAGCUCCCAGCAAGAUCGAUGAAGAAGAUGGGUGAUUUCUGCAUUUCCAACUGAGGU hit 227 : 94646 94818 (fwd) 39.82 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UA :GUA C:AGUGAGG+UU+ +CCGA:G GC: UUA:UGC 94646 AGCUUUGCAC-AGUGGCAGUAGUGUAGCUAGUGAGGUUUA-UCCGAGGUGCAGUUAUUGC 94703 ,,<<<<_________....__>>>>,,,,,<<<<<<<<<<<<<<____............ 61 UAgUugAAAACUAUU....CCcaAccgCCCgccuaagacgacauguua............ 104 UA: U AAAACU+UU C A :C+ ::+ A: :C: :A U++ 94704 UAAUUAAAAACUUUUugucACCAUUCC---AAG-AUGGCUGAA--UAGgaacagcucugg 94757 .....................__>>>>>>>>.>>>>>>,,,,,,,,,,,,<<<<__._>> 105 .....................uauugucggc.uuuggcAAUUUUUGGAAGcccucc.aag 141 A U: :G: :U +:: AUUU+UG A :CC C + G 94758 ucuacagcucccagcaagaucGA-UGAAGAAgAUGGGUGAUUUCUGCAUUUCCAACuGAG 94816 >> 142 gg 143 G: 94817 GU 94818 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2055,sp|AL356356.17|AL356356 Human DNA sequence from clone RP11-54A4 on chromosome 1 ----isReversed: 1 ----hitSequence: AGUUUUGUGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUGUCCAAUGUACAAUUAUUGCUAAUUGAAAACGUUUCAGGCCAAGCACAGUGGCUCACGCCUAUAAUCCCAGCACUCUGGGAGGCCGAGACAGGCC hit 228 : 135885 135753 (rev) 24.47 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUG GC AG GGCA:UAU :+A C A+UGAGG+UU +CC A G +: AUUA:UGC 40666 AGUUUUGUGC-AGUGGCAGUAUCAUAGCCAAUGAGGUUU-GUCCAAUGUACAAUUAUUGC 40723 ,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 UA:UUGAAAAC +UU CCAA: + :C: ++G: :: :+ UA : :: :C 40724 UAAUUGAAAACGUUUcagGCCAAG-C---ACA-GUGGCUCACGCCUA--U--AAUCC--C 40772 >>>,,,,,,,,,,,,<<<<__..._>>>> 118 ggcAAUUUUUGGAAGcccucc...aaggg 143 :G:A U+UGG A ::C: + A:G:: 40773 AGCAC--UCUGGGA-GGCCGAgacAGGCC 40798 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2145,sp|AL356601.14|AL356601 Human DNA sequence from clone RP11-486D20 on chromosome 6 ----isReversed: 1 ----hitSequence: AGCUUUGCACCAUGGCAGUAUUGUAGCCAAUGAGGUUUAUCUGAGGUGUGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACUCCACCAUGAUGACUUGUAACAUAGUCAGUAUUGGCAAUUUUUGACAGUCUCCAGGGA hit 229 : 8846 8708 (rev) 92.75 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C+A GGCA:UAU UA CCA+UGAGG+UU+ +C+GAGG G AUUA:UGC 82327 AGCUUUGCACCA-UGGCAGUAUUGUAGCCAAUGAGGUUUA-UCUGAGGUGUGAUUAUUGC 82384 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++ CC:CC A: A:GAC:UGU+A AU:GUC:G :UUGG: 82385 UAAUUGAAAACUUUUCCCAAUACUCCACC-AUGAUGACUUGUAACAUAGUCAGUAUUGGC 82443 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUUG+ AG:C::C+ ::G: 82444 AAUUUUUGACAGUCUCCA-GGGA 82465 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2219,sp|AL356968.41|AL356968 Human DNA sequence from clone RP11-329A14 on chromosome 1 ----isReversed: 0 ----hitSequence: AGCUUUGCACAUUGGCAGUAUCGCAGCCAAUGAGAUUUAUCCAAGGCAUGAUUAUUGCUAAUAAAAAGCUUAUAUUAGGAAAAAAUAUCUGUAAUCAAUCAUCUAUGCUUCCAUCUCAAGAAGCUGCCAGCCUG hit 230 : 121627 121760 (fwd) 18.79 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C A GGCA:UAUC :AGCCA+UGAG +UU+ +CC AGGC: GAUUA:UGC 121627 AGCUUUGCAC-AUUGGCAGUAUCGCAGCCAAUGAGAUUUA-UCCAAGGCAUGAUUAUUGC 121684 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>.>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggc.uuugg 119 UA:U AAA CU+ U A: G:: A: :: :: GU+AU :: ::+: U :: 121685 UAAUAAAAAGCUUAUA-UUAG-----GAA-AAA-AUAUCUGUAAUCAAUCAUCUaUGCUU 121736 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 C AU U+ GAAGC C++ G 121737 CCAUCUCAAGAAGCUGCCAGCCUG 121760 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2330,sp|AL357561.19|AL357561 Human DNA sequence from clone RP11-417E19 on chromosome 6 ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGACAGUAUCGGAGCCAAUGAGGUUUAUCCGAGGGGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCAGCCGUGACGACUUGAAAUACAGUCGGCACUGGCAAUUUUUGACAGUCUCUAUGGAGA hit 231 : 42854 42714 (rev) 112.40 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG G CA:UAUCG A:CCA+UGAGG+UU+ +CCGAGG: CGAUUA:UGC 20503 AGCUUUGCAC-AGUGACAGUAUCGGAGCCAAUGAGGUUUA-UCCGAGGGGCGAUUAUUGC 20560 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CC GCC ::GACGAC:+G++AUA+:GUCGGC::UGGC 20561 UAAUUGAAAACUUUUCCCAAUACCCAGCC-GUGACGACUUGAAAUACAGUCGGCACUGGC 20619 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 20620 AAUUUUUGACAGUCUCUAuGGAGA 20643 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2430,sp|AL358612.9|AL358612 Human DNA sequence from clone RP11-435M3 on chromosome 10 ----isReversed: 1 ----hitSequence: AUUUAUUGGAUUGAUAGAAGAGCGCAGACCCUGAGGGAAUGGGAGGCAUGAUUAUUGCUAAUUGAAAACUUUUCCAAAUACCUUGCCCUGAUGACUUGCAAUACAAUCACGUUGGUAAUUGUUGUCAGUCUCUAUAAAGA hit 232 : 27569 27430 (rev) 23.28 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 AU U U G U+G AA A C :AG:C UGAGG A+ GAG:C: G UUAUUGC 146453 AUUUAUUGGAUUGAUAGAAGAGCGCAGACCCUGAGGGA--AUGGGAGGCAUGAUUAUUGC 146510 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU:AAAACU+UUCC:AA:++C CC : G GA :+G +AUA+: UC C :UGG 146511 UAAUUGAAAACUUUUCCAAAUACCUUGCC-CUGAUGACUUGCAAUACAAUC-ACGUUGGU 146568 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUU UUG AG:C: ++ A :G: 146569 AAUUGUUGUCAGUCUCUAuAAAGA 146592 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2516,sp|AL359199.34|AL359199 Human DNA sequence from clone RP11-296A20 on chromosome 1 ----isReversed: 0 ----hitSequence: AGUUUUGUGCUGUGGCAGUAUCAUAGCCGAUGAAGUUUAUCCAAGGCACAAUUAUUGCUAAUUGAAAACUUUACCCAAUACCCCACCAUGACAACUUGCAACAUAUUCAGCAUUGGCAAUUUUUUUUUUUUUUGAGACA hit 233 : 85287 85425 (fwd) 66.46 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUG GC +G GGCA:UAU :+AGCC +UGA G+UU+ +CC AGGC+: AUUA:UGC 85287 AGUUUUGUGC-UGUGGCAGUAUCAUAGCCGAUGAAGUUUA-UCCAAGGCACAAUUAUUGC 85344 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+U CCCAA:++CCC:CC A:GA A :UG +A AU: U GC:UUGG: 85345 UAAUUGAAAACUUUACCCAAUACCCCACC-AUGACAACUUGCAACAUAUUCAGCAUUGGC 85403 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAUUUUU : :: + :: : 85404 AAUUUUUUUUUUUUUUGA-GACA 85425 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2598,sp|AL359545.12|AL359545 Human DNA sequence from clone RP13-42E14 on chromosome Xq13.1-13.3 ----isReversed: 1 ----hitSequence: ACAUUUAAAAAUAAAUUGGAAGCCAACGAGGUUUAUCCGAGGCACAGUUAUUGCUAAUUGAAAAUUUUUCCCGAUACCUGGCCAUUAUGACUUGAAAUACAGUUGGCAUUGGUGAAAUAAAUAAAU hit 234 : 85098 84973 (rev) 17.97 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A UUU A AA G AGCCA+ GAGG+UU+ +CCGAGGC C UAUUGC 42146 ACAUUU-----AAAAAUAAAUUGGAAGCCAACGAGGUUUA-UCCGAGGCACAGUUAUUGC 42199 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U:GAAAA U+UUCCC:A:++C CC A::A: AC:+G++AUA+:GU :G::UUGG 42200 UAAUUGAAAAUUUUUCCCGAUACCUGGCC-AUUAUGACUUGAAAUACAGUUGGCAUUGGU 42258 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 A U +AA + +U 42259 GAAAU---AAAUAAAU------- 42271 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3450,sp|AL445230.11|AL445230 Human DNA sequence from clone RP11-517F10 on chromosome 1 ----isReversed: 1 ----hitSequence: AGCUUUGCACAAUGGCAAGUAUCAUAGCCAAUGAGGUUUAUCUGAGGCAUGACUAUUGCUAAUUGAAAAAUUUUCCCAAUACCCCACUGUGAUGACUUGCAACAUAGUCAGCACUGACAAUUUUUGACAGUCUAUACAAAGA hit 235 : 53917 53776 (rev) 85.83 bits :::::::::::::::::<<.-<<<<<-<<<_________________>>>>>>>>-->>, 1 AuCUUUGCGCUAGGGGCaa.UaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG 59 A+CUUUGC C A GGCAA U UC:+AGCCA+UGAGG+UU+ +C+GAGGC+:GA UAUUG 48429 AGCUUUGCAC-AAUGGCAAgUAUCAUAGCCAAUGAGGUUUA-UCUGAGGCAUGACUAUUG 48486 ,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 60 CUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 CUA:UUGAAAA U+UUCCCAA:++CC :CU::GA:GAC:UG +A AU:GUC:GC::UG: 48487 CUAAUUGAAAAAUUUUCCCAAUACCC-CACUGUGAUGACUUGCAACAUAGUCAGCACUGA 48545 >,,,,,,,,,,,,<<<<__._>>>> 120 cAAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C: ++ A :G: 48546 CAAUUUUUGACAGUCUAUAcAAAGA 48570 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3766,sp|AL451051.6|AL451051 Human DNA sequence from clone RP11-293L15 on chromosome 1 ----isReversed: 1 ----hitSequence: AGUUUUGUGCAGGGGCAGUAUCAUAGUAUCGUAGCCAGUGAGGUUUAUCAAAGGUGUGAUUAUUGCUAACUGAAAACUUUUCCCAAUAUCCCUUCAUGACAACUAAAAAUAGAGUCGGCAUUGGCAAUUUUCGAAUUUGACAGUCUA hit 236 : 19158 19012 (rev) 60.73 bits :::::::::::::::::........<<-<<<<<-<<<_________________>>>>>> 1 AuCUUUGCGCUAGGGGC........aaUaucguAgccAGUGAGGcUuuAaCCGAggcgcg 52 A+ UUUG GC AGGGGC A:UAUC UA CCAGUGAGG+UU+ +C AGG G G 57614 AGUUUUGUGC-AGGGGCaguaucauAGUAUCGUAGCCAGUGAGGUUUA-UCAAAGGUGUG 57671 >>-->>,,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>> 53 auUAuuGCUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucg 112 AUUA:UGCUA::UGAAAACU+UUCCCA::+ CCC::C A:GAC AC:: ++AUA::GU G 57672 AUUAUUGCUAACUGAAAACUUUUCCCAAUAUCCCUUC-AUGACAACUAAAAAUAGAGUCG 57730 >>>>>>>>,,,,,,,,,,,,<<<<___>>>> 113 gcuuuggcAAUUUUUGGAAGcccuccaaggg 143 GC:UUG::AAUUUU G+A : C++ : 57731 GCAUUGGCAAUUUUCGAAU-UUGACAGUCUA 57760 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4051,sp|AL513170.16|AL513170 Human DNA sequence from clone RP11-285B4 on chromosome 1 ----isReversed: 1 ----hitSequence: AGCUUUGUGAAGUGGCAGUAUCAUAGCCAGUGAGGUUUAUCCAAGGCACGAUUAUUGCUAACUGAGCAGGCUUGCCUCAUAAGUCCCUCAAUAGUCAGAAAAUCCACUGGUCAUACAAAUGUGAGUCUUCUGUUCCUUAAUAAUUUCUCAAAUGAAUAAAUA hit 237 : 45135 44974 (rev) 26.98 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG G AG GGCA:UAUC:+AGCCAGUGAGG+UU+ +CC AGGC+:GAUUA:UGC 51614 AGCUUUGUGA-AGUGGCAGUAUCAUAGCCAGUGAGGUUUA-UCCAAGGCACGAUUAUUGC 51671 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<____.............. 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguua.............. 104 UA::UGA A UU C CA::+G CC : :A : ::A:A ++A 51672 UAACUGAGCAGGCUUgcCUCAUAAGUCCCUCAAUAGUCAGA--AAAuccacuggucauac 51729 ..........__>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 ..........uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 U:U:: : U: : AAUUU+U +AA : : ++ : : 51730 aaaugugaguCU-UCUGUUCCUUAAUAAUUUCUCAAA-UGAAUA-AAUA 51775 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4121,sp|AL513353.7|AL513353 Human DNA sequence from clone RP11-309N12 on chromosome 9 ----isReversed: 0 ----hitSequence: AGCUUUGUGAAUGGCAGUAUCAUAGCCAAUGAGGUUUAUCUGAGGAGAGAUUAUUCUAAGAGAAAGUAUAAUAAGAUUCAAUAAGAUUUCAUAUGUUCCUUGUAUUUCAAGUGUAUCUAAUAAUUUAAUACCUG hit 238 : 95406 95539 (fwd) 12.09 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG G A GGCA:UAUC:UA CCA+UGAGG+UU+ +C+GAGG G:GAUUA:U C 95406 AGCUUUGUGA-A-UGGCAGUAUCAUAGCCAAUGAGGUUUA-UCUGAGGAGAGAUUAUU-C 95461 ,,<<<<_________.......__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>> 61 UAgUugAAAACUAUU.......CCcaAccgCCCgccuaagacgacauguuauauugucgg 113 UA:: :AA A UAU C: ::+G ::: ::: :::: +UU+UA :::: 95462 UAAGAGAA-AGUAUAauaagauUCAAUAAG---AUU-UCAUAUGUUCCUUGUAUUUCAAG 95516 >>>>>>>,,,,,,,,,,,,<<<<___>>>> 114 cuuuggcAAUUUUUGGAAGcccuccaaggg 143 :::+:::AAU UU AA +CCU + 95517 UGUAUCUAAUAAUUU-AAUACCU--G---- 95539 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4600,sp|AL590669.11|AL590669 Human DNA sequence from clone RP11-76K24 on chromosome 1 ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGUAGCAGUAUUAUAGCCAGUGAAGUUUAUCUGAGGUGAUUAUUGCUAACUGAAAAACCCCUGCCUUUCAGGAACUAUUCUAAUUAAGGAAGACAGAUGAGAAGAAAAGAAGGAAAACAUUU hit 239 : 7628 7759 (fwd) 18.31 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GCA:UAU UA CCAGUGA G+UU+ +C+GAGG G AUUA:UGC 7628 AGCUUUGUGC-AGUAGCAGUAUUAUAGCCAGUGAAGUUUA-UCUGAGGUG--AUUAUUGC 7683 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____......__>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua......uauugucggc 114 UA::::AAAA A CC:::: ::::: G ::::: +U+A A ::::: 7684 UAACUGAAAA--ACCCCUGCC-----UUUCAGGAACUAUUCUAAuuaaggAAGACAGAU- 7735 >>>>>>,,,,,,,,,,,,<<<<___>>>> 115 uuuggcAAUUUUUGGAAGcccuccaaggg 143 :::::AA GGAA +C+U+ 7736 GAGAAGAAAAGAAGGAAAACAUUU----- 7759 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4637,sp|AL590783.5|AL590783 Human DNA sequence from clone RP11-397C12 on chromosome 1 ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUAGCAAUAUCAUAGCCAAUGAGGUUUAUCUGAGGCGCAGUCAUUGCUAAUUGAAAACUUUAAAGGACUAAAUCUUAAUGCAGAAAAGAAGUUGAUUUUAACACAAUUGUUCAUAUUAAAUG hit 240 : 86814 86682 (rev) 37.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GCAAUA :UAGCCA+UGAGG+UU+ +C+GAGGCG: U AUUGC 70543 AGCUUUGCAC-AGUAGCAAUAUCAUAGCCAAUGAGGUUUA-UCUGAGGCGCAGUCAUUGC 70600 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____.....__>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua.....uauugucggcu 115 UA:UU:AAAACU+U :AA: G: +:A:: : :A G ++ A U: : ::U 70601 UAAUUGAAAACUUU---AAAG-----GACUAAAUCUUAAUGCAGaaaagAAGUUGAUUUU 70652 >>>>>,,,,,,,,,,,,<<<<___>>>> 116 uuggcAAUUUUUGGAAGcccuccaaggg 143 :+ :CAAUU UU C:: + A ::G 70653 AACACAAUUGUU-----CAUAUUAAAUG 70675 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4922,sp|AL592079.5|AL592079 Human DNA sequence from clone RP11-96P22 on chromosome 6 ----isReversed: 1 ----hitSequence: ACCUCUGCACAGUGGCAGUAUCAUAGUCAAUGAGGUUUAUCCAAUGUGUGAUUAUUGUUAAUUGAAAACUUUUCCCAAUACCCCACCAUGAUGACUUGAAAUAUAGUCAGCAUGGGCAAUUUUUGAGUGUCUUUAUGGAGA hit 241 : 3803 3663 (rev) 82.07 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CU UGC C AG GGCA:UAUC:UA A+UGAGG+UU+ +CC A G:GAUUA:UG 73245 ACCUCUGCAC-AGUGGCAGUAUCAUAGUCAAUGAGGUUUA-UCCAAUGUGUGAUUAUUGU 73302 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCC:CC A:GA:GAC:UG++AUAU:GUC:GC:U GG: 73303 UAAUUGAAAACUUUUCCCAAUACCCCACC-AUGAUGACUUGAAAUAUAGUCAGCAUGGGC 73361 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ G:C::++ +::G: 73362 AAUUUUUGAGUGUCUUUAuGGAGA 73385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #5326,sp|AL607089.16|AL607089 Human DNA sequence from clone RP11-248I9 on chromosome 1 ----isReversed: 1 ----hitSequence: AGUUUUGUGCAGUGGCGGUAUCACAGCCAAUGAGGUUUACGUGAGGUACAAUUAUUGUUAUUCGUAAGAUAAAACAAAACAAAGUACCUAUGAGCUUUGGCAUCUUGCAACUCCUUCAAAUGUGUCACCAUACA hit 242 : 70436 70303 (rev) 19.37 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUG GC AG GGC::UAU ::A CCA+UGAGG+UU+ +GAGG :: AUUA::G 27186 AGUUUUGUGC-AGUGGCGGUAUCACAGCCAAUGAGGUUUA-CGUGAGGUACAAUUAUUGU 27243 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U:G AA UA C:A: :C: AAG::+::AUG+ UU::+::C U:G: 27244 UAUUCGUAAGAUAAAA-CAAA-----ACA-AAGUACCUAUGAGC-UUUGGCAUC--UUGC 27293 ,,,,,,,,,,,,<<<<__..._>>>> 121 AAUUUUUGGAAGcccucc...aaggg 143 AA U +U AA ::::+C A:::: 27294 AACUCCUUCAAAUGUGUCaccAUACA 27319 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #5656,sp|AL672032.6|AL672032 Human DNA sequence from clone RP11-308B5 on chromosome X ----isReversed: 1 ----hitSequence: AGUUUUGUGCAGUGGCAGCAUCAUAGCCAGUGAGGUUUAUCUGAGGAGUGAUUAUUGCUAAUUGAAAACUUUUCCCAGUACCCCGCCAUGAUGGCUUGAAAUAUAGUUGGCGUUGGCAUUUUUUGACAGUCUGUAUGGA hit 243 : 190439 190301 (rev) 92.85 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUUG GC AG GGCA: AUC:UA CCAGUGAGG+UU+ +C+GAGG G:GAUUA:UGC 18879 AGUUUUGUGC-AGUGGCAGCAUCAUAGCCAGUGAGGUUUA-UCUGAGGAGUGAUUAUUGC 18936 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: UGAAAACU+UUCCCA :++CCCGCC A GA: C:UG++AUAU:G :GC UUGGC 18937 UAAUUGAAAACUUUUCCCAGUACCCCGCC-AUGAUGGCUUGAAAUAUAGUUGGCGUUGGC 18995 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 A UUUUUG+ AG:C::++ ::G: 18996 AUUUUUUGACAGUCUGUA-UGGA 19017 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #5907,sp|AL772262.4|AL772262 Human DNA sequence from clone RP11-444C24 on chromosome X ----isReversed: 0 ----hitSequence: UUCUUUGUUCAGUGGCAAUAUCACACUUCAUGAAGUUUUUCUGAGUCACAAUUAUUGCUGAUUGAAAUUUUUAGAGUAAUGAUUUUUCCUGCAUAAUUUUAAUUAUUUAUAUAAUUAUGCAUUUUGAUUUAAGGAUUUUAAUGAAUAUUUGAAAAAGAGA hit 244 : 24958 25117 (fwd) 22.74 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 UCUUUG C AG GGCAAUAU ::A : +UGA G+UUU +C+GA: :: AUUAUUGC 24958 UUCUUUGUUC-AGUGGCAAUAUCACACUUCAUGAAGUUUU-UCUGAGUCACAAUUAUUGC 25015 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<____............... 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguua............... 104 U+:UU:AAA U+U :AA: G :+:::::C: ++UA 25016 UGAUUGAAAUUUUUAgAGUAAU-----G---AUUUUUCCUGCAUAauuuuaauuauuuau 25067 ..................__>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 ..................uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 U :G:::::+:+ G AAU UUUG+AA +++ A 25068 auaauuaugcauuuugauUUAAGGAUUUUAAUG-AAUAUUUGAAAAAGAG--A---- 25117 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6043,sp|AL929302.16|AL929302 Human DNA sequence from clone RP11-716A19 on chromosome X ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAAGCUAAGUAAGAGCUCACAGAAUCAAAGGAGCCAACUUGGAAAGGGUAGGAACCAGAGC hit 245 : 64943 64818 (rev) 41.07 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAUC UAGCCA+UGAGG+UU+ +CCGAGGCG GAUUA:UGC 107672 AGCUUUGCAC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGUGAUUAUUGC 107729 ,,<<<<____._______>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAA.CUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 UA:UU:AAAA CUA :AA:+G :: :::: :CA +++ G: :::: U : 107730 UAAUUGAAAAgCUAAG--UAAGAG---CUC-ACAGAAUCA--AAG----GAGCCAACUUG 107777 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 :AA GG AG: ::C+ :: : 107778 GAAAG---GGUAGGAACCA-GAGC 107797 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6597,sp|AP000673.4|AP000673 Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-88B16. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCAUAGCCAGUGAGGUUUAUCUGAAGCACGAUUAUUACUAAUUGAAAACAGAAUGUGCAUAAAUAACAAGUCAGUUAUUCCUCCAGGA hit 246 : 31132 31239 (fwd) 34.34 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUC:+AGC AGUGAGG+UU+ +C+GA GC+:GAUUA:U C 31132 AGCUUUGCGC-AGUGGCAGUAUCAUAGCCAGUGAGGUUUA-UCUGAAGCACGAUUAUUAC 31189 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU AAAAC AA: G: : +UA A : :C 31190 UAAUUGAAAACA-----GAAU-----GUGC-----------AUAAA----------UAAC 31218 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA U+ G A :CCUCC AGG: 31219 AA-GUCAGUUAUUCCUCC-AGGA 31239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6619,sp|AP000705.2|AP000705 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B745D19, LL56-APP region. ----isReversed: 0 ----hitSequence: ACCUUUGCACAGUGGAAGUAUGCUAGCUGAUGAGGUUUAUCUGAGGUGCAAGUAUUGCUAAUUCAAAACUUUUCCCAAUACCCGGCCAUGAUGACUUGAAAUAUGGUCGACAUUGGCAAUUUUCGACAGUCUCUGCAGAGA hit 247 : 102719 102859 (fwd) 79.19 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUGC C AG GG A:U U UA C: +UGAGG+UU+ +C+GA:G G A UA:UGC 102719 ACCUUUGCAC-AGUGGAAGUAUGCUAGCUGAUGAGGUUUA-UCUGAGGUGCAAGUAUUGC 102776 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU AAAACU+UUCC AA:++CC GCC A:G :GAC UG++AUAU GUC: C:UUGGC 102777 UAAUUCAAAACUUUUCCCAAUACCCGGCC-AUGAUGACUUGAAAUAUGGUCGACAUUGGC 102835 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUU G+ AG:C::+ A::G: 102836 AAUUUUCGACAGUCUCUGcAGAGA 102859 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6622,sp|AP000717.5|AP000717 Homo sapiens genomic DNA, chromosome 11 clone:CMB9-75M6, complete sequence. ----isReversed: 1 ----hitSequence: AGUUUUUUGCAGUGGCAGUAUUGCAGCCAAUGAGGUUUAUCUGAGGGGUGAUUAUUGCUCUUUGAAAAUUGAAAAAAAAAAAAAAAAAGACAUGACAUUUGCAUAAAUUCUUUUUUUUUUUUUUGAGAUGGAGUCUUGC hit 248 : 12940 12802 (rev) 26.47 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUU GC AG GGCA:UAU :A:CCA+UGAGG+UU+ +C+GAGG:: AUUA:UGC 16222 AGUUUUUUGC-AGUGGCAGUAUUGCAGCCAAUGAGGUUUA-UCUGAGGGGUGAUUAUUGC 16279 ,,<<<<_________...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>> 61 UAgUugAAAACUAUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcuuu 117 U :UU:AAAA U :AA:+ ::: A:: : ::: UU+ A::: : ::UU 16280 UCUUUGAAAAUUGAAaaaAAAAAAAA---AAA-AGACAUGACAUUUGCAUAAAUUCUUUU 16335 >>>,,,,,,,,,,,,<<<<___>>>> 118 ggcAAUUUUUGGAAGcccuccaaggg 143 ::: UUUUUG+ A : ::+C :: : 16336 UUUUUUUUUUGAGAUGGAGUC-UUGC 16360 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6863,sp|AP001157.4|AP001157 Homo sapiens genomic DNA, chromosome 11q clone:RP11-658F2. ----isReversed: 1 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCAUAGCCAAUGAGGUUUAUCCGAGGCGCAAUUAUUGCUAAUUGAAAACAAAACAUUAGCCAUGCAUGAUGACUGGCACCUGUAAUCCCAGCUACUCAGGAGGCUGAGGCAUUAAAAUCACUUGAACCCAGGAGGUG hit 249 : 34194 34038 (rev) 42.28 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAU :UAGCCA+UGAGG+UU+ +CCGAGGCG: AUUA:UGC 166265 AGCUUUGCGC-AGUGGCAGUAUCAUAGCCAAUGAGGUUUA-UCCGAGGCGCAAUUAUUGC 166322 ,,<<<<_________......__........>>>>,,,,,<<<<<<<<<<<<<<______ 61 UAgUugAAAACUAUU......CC........caAccgCCCgccuaagacgacauguuaua 106 UA:U::AAAAC A CC ::A: G C :CC ::A:::C::G UA 166323 UAAUUGAAAACAAAAcauuagCCaugcaugaUGACUGGC-ACC-UGUAAUCCCAGCUACU 166380 >>>>>>>>>>>>>>,,,,,,,,,,,,<<<<__........_>>>> 107 uugucggcuuuggcAAUUUUUGGAAGcccucc........aaggg 143 ::G:::G:: +GG:A UU +AA C:C:+ A:G:G 166381 CAGGAGGCUGAGGCA----UUAAAAUCACUUGaacccaggAGGUG 166421 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6875,sp|AP001183.6|AP001183 Homo sapiens genomic DNA, chromosome 11 clone:RP11-679I18, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCGUAGCCAGUGAGGUUUAUCGGAGGCGUGAUCACUGCUAAUUGAAAACUUUUCUAUAAAGGAACUGGUCUGUAGUUAAAAAAAAAAAAAUCAAUGUCACAAAGGACAAGGAA hit 250 : 15127 14995 (rev) 52.08 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAUC UAGCCAGUGAGG+UU+ +C GAGGCG GAU A:UGC 159401 AGCUUUGUGC-AGUGGCAGUAUCGUAGCCAGUGAGGUUUA-UCGGAGGCGUGAUCACUGC 159458 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U :AAAACU+UUC : A:+G G:: :: :: : ::GUUA :: : :: ::+::C 159459 UAAUUGAAAACUUUUCUAUAAAG---GAA-CUGGUCUGUAGUUA--AAAAAAAAAAAAUC 159512 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAU U+ +AAG C A G 159513 AAUGUCACAAAGGACA--AGGAA 159533 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7121,sp|AP001684.1|AP001684 Homo sapiens genomic DNA, chromosome 21q, section 28/105. ----isReversed: 0 ----hitSequence: ACCUUUGCACAGUGGAAGUAUGCUAGCUGAUGAGGUUUAUCUGAGGUGCAAGUAUUGCUAAUUCAAAACUUUUCCCAAUACCCGGCCAUGAUGACUUGAAAUAUGGUCGACAUUGGCAAUUUUCGACAGUCUCUGCAGAGA hit 251 : 2245 2385 (fwd) 79.19 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUGC C AG GG A:U U UA C: +UGAGG+UU+ +C+GA:G G A UA:UGC 2245 ACCUUUGCAC-AGUGGAAGUAUGCUAGCUGAUGAGGUUUA-UCUGAGGUGCAAGUAUUGC 2302 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU AAAACU+UUCC AA:++CC GCC A:G :GAC UG++AUAU GUC: C:UUGGC 2303 UAAUUCAAAACUUUUCCCAAUACCCGGCC-AUGAUGACUUGAAAUAUGGUCGACAUUGGC 2361 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUU G+ AG:C::+ A::G: 2362 AAUUUUCGACAGUCUCUGcAGAGA 2385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7233,sp|AP001893.5|AP001893 Homo sapiens genomic DNA, chromosome 11 clone:RP11-50B3, complete sequence. ----isReversed: 1 ----hitSequence: AGUUUUUUGCAGUGGCAGUAUUGCAGCCAAUGAGGUUUAUCUGAGGGGUGAUUAUUGCUCUUUGAAAAUUGGAAAAAAAAAAAAAAAAAAGACAUGACAUUUGCAUAAAUUCUUUUUUUUUUUUUUGAGAUGGAGUCUUGC hit 252 : 149801 149661 (rev) 22.79 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+ UUU GC AG GGCA:UAU :A:CCA+UGAGG+UU+ +C+GAGG:: AUUA:UGC 7902 AGUUUUUUGC-AGUGGCAGUAUUGCAGCCAAUGAGGUUUA-UCUGAGGGGUGAUUAUUGC 7959 ,,<<<<______..___...__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>> 61 UAgUugAAAACU..AUU...CCcaAccgCCCgccuaagacgacauguuauauugucggcu 115 U :UU:AAAA U A :AA:+ ::: A:: : ::: UU+ A::: : :: 7960 UCUUUGAAAAUUggAAAaaaAAAAAAAA---AAA-AGACAUGACAUUUGCAUAAAUUCUU 8015 >>>>>,,,,,,,,,,,,<<<<___>>>> 116 uuggcAAUUUUUGGAAGcccuccaaggg 143 UU::: UUUUUG+ A : ::+C :: : 8016 UUUUUUUUUUUUGAGAUGGAGUC-UUGC 8042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7234,sp|AP001894.4|AP001894 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-606E8. ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCAAACCCAGUGAGGUUUAUCUGUGGCAUGAUUAUUGCUAAUUGAUACUUCCCUCUACAGGAAUUUAAACUUUCCUCUUCAGGAAUGAAAGAUUGGGGUGGUGGGGAACUUCUCAAUACCCUGCCGGG hit 253 : 11220 11367 (fwd) 34.25 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAUC: A CCAGUGAGG+UU+ +C+G GG :GAUUA:UGC 11220 AGCUUUGCAC-AGUGGCAGUAUCAAACCCAGUGAGGUUUA-UCUGUGGCAUGAUUAUUGC 11277 ,,<<<<_.__________>>>>,,,,,<<<<<<<<<<<<<<____..........__>>> 61 UAgUugA.AAACUAUUCCcaAccgCCCgccuaagacgacauguua..........uauug 109 UA:U GA ACU+ C C A:+G ::: A:: : C U+UU AU G 11278 UAAUUGAu--ACUUCCCUCUACAGGAAUUU-AAACUUUCCUCUUCaggaaugaaaGAUUG 11334 >>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 110 ucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 : ::U :::AA UU+U +A CCC C GGG 11335 GGGUGGUGGGGAACUUCUCAAUACCCUGC-CGGG 11367 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7468,sp|AP003041.3|AP003041 Homo sapiens genomic DNA, chromosome 11 clone:RP11-567M21, complete sequence. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUCGUAGCCAGUGAGGUUUAUCGGAGGCGUGAUCACUGCUAAUUGAAAACUUUUCUAUAAAGGAACUGGUCUGUAGUUAAAAAAAAAAAAAUCAAUGUCACAAAGGACAAGGAA hit 254 : 163011 162879 (rev) 52.08 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAUC UAGCCAGUGAGG+UU+ +C GAGGCG GAU A:UGC 25162 AGCUUUGUGC-AGUGGCAGUAUCGUAGCCAGUGAGGUUUA-UCGGAGGCGUGAUCACUGC 25219 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:U :AAAACU+UUC : A:+G G:: :: :: : ::GUUA :: : :: ::+::C 25220 UAAUUGAAAACUUUUCUAUAAAG---GAA-CUGGUCUGUAGUUA--AAAAAAAAAAAAUC 25273 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AAU U+ +AAG C A G 25274 AAUGUCACAAAGGACA--AGGAA 25294 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7696,sp|AP004195.1|AP004195 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1434A12. ----isReversed: 1 ----hitSequence: AACUUUGUGCAAUGGCAGCCAAUGAGGUUUACCUGAGGUGUGAUUAUUGCUAAUGGAAAACUCUUCUCAGUACCCUGCCACGAUGAGUUGAAAUAUAGUCAGCAUUGGCAAUUUUUGACCGUCUCUCCAGAGA hit 255 : 127620 127488 (rev) 53.47 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUG GC A AU :A CCA+UGAGG+UU+ C+GAGG : AUUAUUGC 24215 AACUUUGUGC-------A--AUGGCAGCCAAUGAGGUUUA-CCUGAGGUGUGAUUAUUGC 24264 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: :GAAAACU UUC C: :++CC GCC A:GA:GA :UG++AUAU: UC:GC:UUGGC 24265 UAAUGGAAAACUCUUCUCAGUACCCUGCC-ACGAUGAGUUGAAAUAUAGUCAGCAUUGGC 24323 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ G:C::+C A::G: 24324 AAUUUUUGACCGUCUCUCcAGAGA 24347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7721,sp|AP004293.1|AP004293 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1630B3. ----isReversed: 1 ----hitSequence: AACUUUGUGCAAUGGCAGCCAAUGAGGUUUACCUGAGGUGUGAUUAUUGCUAAUGGAAAACUCUUCUCAGUACCCUGCCACGAUGAGUUGAAAUAUAGUCAGCAUUGGCAAUUUUUGACCGUCUCUCCAGAGA hit 256 : 1026 894 (rev) 53.47 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A CUUUG GC A AU :A CCA+UGAGG+UU+ C+GAGG : AUUAUUGC 124619 AACUUUGUGC-------A--AUGGCAGCCAAUGAGGUUUA-CCUGAGGUGUGAUUAUUGC 124668 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA: :GAAAACU UUC C: :++CC GCC A:GA:GA :UG++AUAU: UC:GC:UUGGC 124669 UAAUGGAAAACUCUUCUCAGUACCCUGCC-ACGAUGAGUUGAAAUAUAGUCAGCAUUGGC 124727 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ G:C::+C A::G: 124728 AAUUUUUGACCGUCUCUCcAGAGA 124751 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7725,sp|AP004318.2|AP004318 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-77K9. ----isReversed: 0 ----hitSequence: AGCUUUGCCCAGUGGCAACAUCAUAACCAGUGAGGUUUAUACAGGGUGCAAUUAUUGCUAACUGAAAACUUUUCCUAAUACCCACCAUGAUGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUGGAUAGUCUCUAUGGAGA hit 257 : 91286 91425 (fwd) 84.30 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCAA AU :UA:CCAGUGAGG+UU+ AC G GG:G: AUUAUUGC 91286 AGCUUUGCCC-AGUGGCAACAUCAUAACCAGUGAGGUUUAUACAG-GGUGCAAUUAUUGC 91343 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA::U:AAAACU+UUCC:A::++CC :CC A:GA:GAC:UG++AUAU:GUC:GC:UUGG: 91344 UAACUGAAAACUUUUCCUAAUACCC-ACC-AUGAUGACUUGAAAUAUAGUCGGCAUUGGC 91401 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUU G+ AG:C::++ +::G: 91402 AAUUUUGGAUAGUCUCUAuGGAGA 91425 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----sequence: #2585,sp|AY236494.1|AY236494 Homo sapiens transmembrane channel-like protein 5 (TMC5) mRNA, complete cds. ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUACCGUAGCCAAUGAGAUUUAUCCGAGACGCGAUUAUUGCUAAUUGGAAAUUUUCCCAAUACCCCACCGUGAUGACUUGAAAUAUAAUCAGCGCUGGCAAUUUUUGACAGUCUCUACGGAGA hit 258 : 3184 3323 (fwd) 85.56 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UA CGUAG CA+UGAG +UU+ +CCGAG CGCG UUA:UGC 3184 AGCUUUGCAC-AGUGGCAGUACCGUAGCCAAUGAGAUUUA-UCCGAGACGCGAUUAUUGC 3241 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUG AAA U+UUCCCAA:++CCC:CC : GA:GA :UG++AUAU: UC:GC :UGG: 3242 UAAUUGGAAA-UUUUCCCAAUACCCCACC-GUGAUGACUUGAAAUAUAAUCAGCGCUGGC 3299 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 3300 AAUUUUUGACAGUCUCUAcGGAGA 3323 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3026,sp|BX255924.4|BX255924 Human DNA sequence from clone RP11-541I19 on chromosome 10 ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCUUAGCCGAUGAGGUUUAUCCGAGGCACGAUUAUUGCUAAUUGAAGUUUGCUUUGUCAGUUUUUGAUUCAUGUACUUUGGGGCCCUGUUGUUAGGUACAUAUUCGUCUACACUCAUUACAUCUUCUUGAUGUAUUAAAAAUUUUUUUCCUAUGAA hit 259 : 3546 3721 (fwd) 25.78 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAUC:+AGCC +UGAGG+UU+ +CCGAGGC+:GAUUA:UGC 3546 AGCUUUGCAC-AGUGGCAGUAUCUUAGCCGAUGAGGUUUA-UCCGAGGCACGAUUAUUGC 3603 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____................ 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua................ 104 UA: ::AA U U :: :+G ::: :: + :CAUGU+ 3604 UAAUUGAAGUUUGCUU-UGUCAG---UUU-UUG-AUUCAUGUACuuuggggcccuguugu 3657 ................................__>>>>>>>>>>>>>>,,,,,,,,,,,, 105 ................................uauugucggcuuuggcAAUUUUUGGAAG 132 U UUG: G ::U:::AAUUUUU 3658 uagguacauauucgucuacacucauuacaucuUCUUGAU-GUAUUAAAAAUUUUU----- 3711 <<<<___>>>> 133 cccuccaaggg 143 ::C ++ G:: 3712 UUCCUA-UGAA 3721 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3286,sp|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-976B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 0 ----hitSequence: AGCUUUGUACAGUGGAAAUAUGGUAGCCAAUGAGGUUUAUCCUAGGUUAUUGCUAAUUGAAAACUUUUUCCAAUACCCUGCCAUGACAACUUGCAAGAUAGUCAGCACUGGCAAUUUUUGACAGUCACUAUGGAGA hit 260 : 199773 199908 (fwd) 72.96 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG GG AAUAU GUA CCA+UGAGG+UU+ +CC AGG UAUUGC 199773 AGCUUUGUAC-AGUGGAAAUAUGGUAGCCAAUGAGGUUUA-UCCUAGGU-----UAUUGC 199825 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UU CCAA:++CC GCC :GA AC:UG +A AU:GU GC: UGGC 199826 UAAUUGAAAACUUUUUCCAAUACCCUGCC-AUGACAACUUGCAAGAUAGUCAGCACUGGC 199884 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 199885 AAUUUUUGACAGUCACUAuGGAGA 199908 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3356,sp|AL133238.3|CNS01DUB Human chromosome 14 DNA sequence BAC C-2510G9 of library CalTech-D from chromosome 14 of Homo sapiens (Human) ----isReversed: 1 ----hitSequence: AGCUUUGUACAGUGGAAAUAUGGUAGCCAAUGAGGUUUAUCCUAGGUUAUUGCUAAUUGAAAACUUUUUCCAAUACCCUGCCAUGACAACUUGCAAGAUAGUCAGCACUGGCAAUUUUUGACAGUCACUAUGGAGA hit 261 : 183169 183034 (rev) 72.96 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG GG AAUAU GUA CCA+UGAGG+UU+ +CC AGG UAUUGC 1964 AGCUUUGUAC-AGUGGAAAUAUGGUAGCCAAUGAGGUUUA-UCCUAGGU-----UAUUGC 2016 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UU CCAA:++CC GCC :GA AC:UG +A AU:GU GC: UGGC 2017 UAAUUGAAAACUUUUUCCAAUACCCUGCC-AUGACAACUUGCAAGAUAGUCAGCACUGGC 2075 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 2076 AAUUUUUGACAGUCACUAuGGAGA 2099 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3459,sp|AL139300.6|CNS01DXG Human chromosome 14 DNA sequence BAC R-894P9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 1 ----hitSequence: AGCUUUGCACAGCGGCAGUAUUGUAGCCAAUGAGAUUUAUCUGAGGUGUGAUUAUUGAUAAUUGAAAACUUUUCCCAAUACCCUGCCGUGAUGACUUGCAAUAUAGUCAGCACUGGCAAUUUUUGACAGUCUCUACAGAGA hit 262 : 113929 113789 (rev) 95.10 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAU UA CCA+UGAG +UU+ +C+GAGG G AUUA:UG 77635 AGCUUUGCAC-AGCGGCAGUAUUGUAGCCAAUGAGAUUUA-UCUGAGGUGUGAUUAUUGA 77692 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CC GCC ::GA:GAC:UG +AUAU:GUC:GC::UGGC 77693 UAAUUGAAAACUUUUCCCAAUACCCUGCC-GUGAUGACUUGCAAUAUAGUCAGCACUGGC 77751 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ A::G: 77752 AAUUUUUGACAGUCUCUAcAGAGA 77775 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3525,sp|AL162171.4|CNS01RHP Human chromosome 14 DNA sequence BAC R-507K2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGUAGUAUCAUAGCCAGUGAGGUUUAUCUGAGGCAUGAUUAUCGACAAUUGAAACAAAAUGUCCUCUUUUGCAAGUAAAAACUCCAGGCACCAAAGUGUUUGCUCGCUCUGCCAUGUGAG hit 263 : 134286 134154 (rev) 32.48 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GG :UAUC:+AGCCAGUGAGG+UU+ +C+GAGGC+:GAUUA: G 63265 AGCUUUGUGC-AGUGGUAGUAUCAUAGCCAGUGAGGUUUA-UCUGAGGCAUGAUUAUCGA 63322 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 A:UU:AAA C:AA: G C : :: : :A: ++A A:U: :G:: : 63323 CAAUUGAAA-------CAAAAUGUC-CUCU-UU-UGCAAGUAAAAACUCCAGGCA-CCAA 63371 ,,,,,,,,,,,,<<<<__..._>>>> 121 AAUUUUUGGAAGcccucc...aaggg 143 A U UUUG GC:C C + G:G 63372 AGUGUUUGCUCGCUCUGCcauGUGAG 63397 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #5669,sp|AL022311.5|HS1014D13 Human DNA sequence from clone RP5-1014D13 on chromosome 22q13.1-13.2 Contains the 3' end of the gene for proteins HSPC021 and HSPC025 (similar to C. elegans FAT-3 alcohol dehydrogenase), the gene for a novel protein similar to ACTN3 (actinin, alpha 3), STSs, GSSs, and a CpG island. ----isReversed: 1 ----hitSequence: AGCUUUGUGCAGUGGCAGUAUGGCCAAUGAGGGUUAUGUGAGGUGUGAUUAUUGCUAACUAAAAAUAAAAAAAUAAAGAAGGCAGCAGGACAAUGGCUUCCCACUUGUAAAGUACUCCAACAGUAUACAAA hit 264 : 8244 8114 (rev) 12.79 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA:UAU CCA+UGAGG UU+ + +GAGG G GAUUA:UGC 63020 AGCUUUGUGC-AGUGGCAGUAU---GGCCAAUGAGGGUUA-UGUGAGGUGUGAUUAUUGC 63074 ,,<<<<_________..__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>> 61 UAgUugAAAACUAUU..CCcaAccgCCCgccuaagacgacauguuauauugucggcuuug 118 UA::U AAAA A A::+ C A + +G A +U+ U C+ UUG 63075 UAACUAAAAAUAAAAaaAUAAAGAA---GGC-AGCAGGACA--AUGGC-UUCCCA-CUUG 63126 >>,,,,,,,,,,,,<<<<___>>>> 119 gcAAUUUUUGGAAGcccuccaaggg 143 AA U +U AA : ::++ :: : 63127 UAAAGUACUCCAACAGUAUA-CAAA 63150 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #7730,sp|AL022067.1|HS134E15 Human DNA sequence from clone RP1-134E15 on chromosome 6q21 Contains the 3' part of the PRDM1 gene for PR domain containing 1 with ZNF domain and the 3' part of the APG5L gene for APG5 autophagy 5-like (S. cerevisiae). ----isReversed: 0 ----hitSequence: AGCUUUGUGUACUGGCAAUAUCAUAACCAAUGAGGUUCAUCCAAGACAUGAUAAUUGCUAAUGGCAAACAGCAUAAAACCAACUGCCAAAAAAAUGCUUUGCAUCCCACAAGAACUAGAUAUAGACAAGUGCCAUUUUUGCUACACAGAAUGCU hit 265 : 176821 176974 (fwd) 18.62 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG G A GGCAAUAUC:+A CA+UGAGG+U++ +CC AG +:GAU AUUGC 176821 AGCUUUGUGU-ACUGGCAAUAUCAUAACCAAUGAGGUUCA-UCCAAGACAUGAUAAUUGC 176878 ,,<<<<_____....______>>>>,,,,,<<<<<<<<<<<<<<____............ 61 UAgUugAAAAC....UAUUCCcaAccgCCCgccuaagacgacauguua............ 104 UA:U:G AAAC UA CC:A: GCC ::::: ::C: :: ++U 176879 UAAUGGCAAACagcaUAAAACCAACUGCCAAAAAAAUGCUUUG-CAUCccacaagaacua 176937 __>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 A :: :G:: ::::: AUUUUUG A C +A G 176938 GA-UAUAGACAAGUGCCAUUUUUGCUA-CACAGAAUGCU 176974 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #7944,sp|Z64561.1|HS13A2R H.sapiens CpG island DNA genomic Mse1 fragment, clone 13a2, reverse read cpg13a2.rt1c . ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCC hit 266 : 232 314 (fwd) 22.03 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+ U+ +CCGAGGCGCGAUUA:UGC 232 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUCUA-UCCGAGGCGCGAUUAUUGC 289 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA: 290 UAAUUGAAAACUUUUCCCAAU--------------------------------------- 310 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 A CCC 311 A-----------CCC-------- 314 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----sequence: #6995,sp|AL513498.2|HS336O12 Homo sapiens chromosome 9 BAC RP11-336O12. ----isReversed: 0 ----hitSequence: AGCUUUGUGCAGUGGCAGGAUCAUAGCCAAUGAGGUUUAUGCGAGGCACAAUUACUGCUAACUGAAACUACGAAUGGAGUAUUAAAAUUCAGAAUUCUGGGGUCAGGGGAGGCCUUGAAUUUGAUUUACUUU hit 267 : 86313 86444 (fwd) 21.34 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG GC AG GGCA: AU :+AGCCA+UGAGG+UU+ + CGAGGC+: AUUA:UGC 86313 AGCUUUGUGC-AGUGGCAGGAUCAUAGCCAAUGAGGUUUA-UGCGAGGCACAAUUACUGC 86370 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:::GAA ACUA C::: : +::+: : A:AU ++ AUU:U : :+::+ : 86371 UAACUGAA-ACUA----CGAA-----UGGAGUAUUAAAAUUCAGAAUUCUGGGGUCAGGG 86420 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 A +U GAA : :+ A: : 86421 GAGGCCUUGAAUUUGAUUuACUUU 86444 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----sequence: #2925,sp|AL121990.34|HSDJ613A2 Human DNA sequence from clone RP4-613A2 on chromosome 1q42.11-42.3 ----isReversed: 1 ----hitSequence: AGCUUAGCACAGUGGCAGUAUCAUAGGCAGUGAGGUUUAUCCGAGGCGUGAUUAUUGCCAAUUGAAAACUUUUCUCGAUACCCUUCUGUGAUGACUUGCAAUGUAGUCAGCAUUGGCAAGGUUUUUUUUUUUUU hit 268 : 49204 49071 (rev) 65.51 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUU GC C AG GGCA:UAUC:UAG CAGUGAGG+UU+ +CCGAG CG:GAUUA:UGC 98710 AGCUUAGCAC-AGUGGCAGUAUCAUAGGCAGUGAGGUUUA-UCCGAGGCGUGAUUAUUGC 98767 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 A:U:GAAAACU+UUC C:A:++CC ::CU::GA:GAC:UG +AU U:GUC:GC::UG:: 98768 CAAUUGAAAACUUUUCUCGAUACCC-UUCUGUGAUGACUUGCAAUGUAGUCAGCAUUGGC 98826 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA UUU : : + : : 98827 AAGGUUU-----UUUUUU-UUUU 98843 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----sequence: #3023,sp|AL078461.38|HSDJ901O8 Human DNA sequence from clone RP5-901O8 on chromosome 20q11.1-11.23 Contains ESTs, STSs and GSSs. Contains parts of the hepatocellular carcinoma-associated antigen 58 (HCA58) gene, a cytochrome c oxidase VIIB subunit (COX7B) pseudogene and a hypoxia inducible protein 1 (HIG1) pseudogene. ----isReversed: 0 ----hitSequence: AGCUUUGCCCAGUGGCAGUAUCCUAGCCAAUGAGGUUUAUCUGAGGCAUGAUUAUUAAAAUAAUUGAAAAUUUUCCCAAUACACCAAAGUGACAACUUACAACAUAGGUUGGCAAUGGCAAUUUUUGACAUGUCUACAAAGAC hit 269 : 97565 97707 (fwd) 59.86 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,. 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuG. 59 A+CUUUGC C AG GGCA:UAUC +AGCCA+UGAGG+UU+ +C+GAGGC+ GAUUA:U 97565 AGCUUUGCCC-AGUGGCAGUAUCCUAGCCAAUGAGGUUUA-UCUGAGGCAUGAUUAUUAa 97622 .,,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>.>>>>>>>> 60 .CUAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauug.ucggcuuu 117 UA:UUGAAAA U+UUCCCAA:++ CC::: ::GAC AC:U +A AU:G U GGC::U 97623 aAUAAUUGAAAA-UUUUCCCAAUACACCAAA-GUGACAACUUACAACAUAGgUUGGCAAU 97680 >>>,,,,,,,,,,,,<<<<__._>>>> 118 ggcAAUUUUUGGAAGcccucc.aaggg 143 :::AAUUUUUG+ A ::CU C AAG:: 97681 GGCAAUUUUUGACAUGUCUACaAAGAC 97707 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #3800,sp|AL132794.25|HSJ343I24 Human DNA sequence from clone RP3-343I24 on chromosome 6q13-14.1 Contains ESTs, STSs and GSSs. ----isReversed: 1 ----hitSequence: AGCUUUGCACAGUGGUAGUAUCACAGCCACUGAGGUCUGAGAUGCAAUUAUUGCUCAUUGAAAACUUUUCCCAAAACCCCUGUCAUGAUGACUUGCAAUAUAGUUGACAUUGGUAAUUUUUGACAGUCUCUAAGGAGA hit 270 : 32675 32538 (rev) 68.67 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GG A:UAU ::A CA UGAGG +C+GAG :: AUUA:UGC 82054 AGCUUUGCAC-AGUGGUAGUAUCACAGCCACUGAGG-----UCUGAGAUGCAAUUAUUGC 82107 ,,<<<<_________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 U :UU:AAAACU+UU CC:AA:C+CC :C A:G : AC:UG +AUAU:GU : C:UUG: 82108 UCAUUGAAAACUUUUcCCAAAACCCCUGUC-AUGAUGACUUGCAAUAUAGUUGACAUUGG 82166 >,,,,,,,,,,,,<<<<__._>>>> 120 cAAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 82167 UAAUUUUUGACAGUCUCUAaGGAGA 82191 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----sequence: #9748,sp|M67480.1|HSPROAA2 Human prothymosin-alpha gene, complete cds. ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCGUAGCCAAUGAGCUUUACCCGAGGCGCGAUUAUUGCUAGUUAAAUAUUUAUAAAAACCUUUCGAGCAGCGCCUGAACAAGAAUAGGUUCAGAGGAGACUCCGGUAUCUGAGUUUGGGCUUGGCCAGGGUGGGGAAAAGCCCUUGUU hit 271 : 222 389 (fwd) 41.37 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAUCGUAGCCA+UGAG +UU+ CCGAGGCGCGAUUA:UGC 222 AGCUUUGCAC-AGUGGCAGUAUCGUAGCCAAUGAGCUUUA-CCCGAGGCGCGAUUAUUGC 279 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<____................ 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguua................ 104 UAGUU AA A U+ U AACC CG:+:A:+:C: A:++++ 280 UAGUUAAAUAUUUAUAAAAACCUUUCGAGCAGCGCCUGAACAAGaauagguucagaggag 339 .............__>>>>>>>>>>>>>>,,,,,,,,,,,,<<<<___>>>> 105 .............uauugucggcuuuggcAAUUUUUGGAAGcccuccaaggg 143 :U :G: :U:+:CA U GGAA : C C G : 340 acuccgguaucugAGUUUGGGC-UUGGCCAGGGUGGGGAAAAGCCCU-UGUU 389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #1730,sp|V00592.1|HSRU4A Homo sapiens U4A snRNA ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 272 : 1 141 (fwd) 129.24 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 1 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 58 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 59 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCAUUGGC 117 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 118 AAUUUUUGACAGUCUCUAcGGAGA 141 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #7659,sp|X02651.1|HSU44P Human U4 snRNA pseudogene (U4/4) ----isReversed: 0 ----hitSequence: AGCUUUGUACAGUGCCAGUAUCAGAGCCAAUGAGGUUUUUCUGAGGUGUGAUUAUUGCUAAUUGAAAACUUUUCCCAAUUAAAAACAAAAACAAAAUAAAAUUUAAAAAACACACCAGAG hit 273 : 53 172 (fwd) 49.88 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG G CA:UAUC: A CCA+UGAGG+UUU +C+GAGG :GAUUA:UGC 53 AGCUUUGUAC-AGUGCCAGUAUCAGAGCCAAUGAGGUUUU-UCUGAGGUGUGAUUAUUGC 110 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA: ::: : : +++A A : :+::: 111 UAAUUGAAAACUUUUCCCAAU-----UAA-AAA-------CAAAAA-------CAAAAUA 150 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA UUU +AA C C CC G G 151 AAAUUUAAAAAACACACC-AGAG 172 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #7673,sp|X02652.1|HSU45P Human U4 small nuclear RNA pseudogene (U4/5) ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGAGCGAUUAUUGCUAAUUGAAAAAGAAAAUGCCUGCAGUUUAGAAGAUGGCUGAUAAAGAAACAGAUUCUGGAAUUAAAAAUUAAAACCUA hit 274 : 53 188 (fwd) 48.16 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUA CCA+UGAGG+ U+ +CCGAGG GCGAUUA:UGC 53 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUCUA-UCCGAGGAGCGAUUAUUGC 110 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU:AAAA A :AA: GCC G : ++ ::A :G+U+ : U::+ +: C 111 UAAUUGAAAAAGA----AAAU-GCCUGCA-GU--UUAGAAGAUGGCUGAUAAAG--AAAC 160 ,,,,,,,,,,,,<<<<__....._>>>> 121 AAUUUUUGGAAGcccucc.....aaggg 143 A UU+UGGAA :::: + A:::: 161 AGAUUCUGGAAUUAAAAAuuaaaACCUA 188 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #7708,sp|X02653.1|HSU46P Human U4 small nuclear RNA pseudogene (U4/6) ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUUGUAGCCAAUGAGGUCUAUCCGAGGCGUGAUUAUUGCUAAUAGAAACAGGAAAAUUUUUUUAAUAAAUCCUCACCUUGGUCUUCACAGGAACCACAAGGACAACAUUCUCAAUGCGAAUU hit 275 : 53 193 (fwd) 31.08 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAU UAGCCA+UGAGG+ U+ +CCGAGGCG AUUA:UGC 53 AGCUUUGCGC-AGUGGCAGUAUUGUAGCCAAUGAGGUCUA-UCCGAGGCGUGAUUAUUGC 110 ,,<<<<_.......________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>> 61 UAgUugA.......AAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucg 112 UA:U :A AAA U+UU : A:+ CC :C: :G::+::: ++ :::+: 111 UAAUAGAaacaggaAAAUUUUUuUAAUAAAUCCUCACCUUGGUCUUCA-CAG---GAACC 166 >>>>>>>>,,.,,,,,,,,,,<<<<___>>>> 113 gcuuuggcAA.UUUUUGGAAGcccuccaaggg 143 :C: :G: AA UU+U +A GC++++ 167 ACAAGGACAAcAUUCUCAAUGCGAAUU----- 193 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #7747,sp|X02654.1|HSU48P Human U4 small nuclear RNA pseudogene (U4/8) ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAAGCUAAGUAAGAGCUCACAGAAUCAAAGGAGCCAACUUGGAAAGGGUAGGAACCAGAGC hit 276 : 53 178 (fwd) 41.07 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAUC UAGCCA+UGAGG+UU+ +CCGAGGCG GAUUA:UGC 53 AGCUUUGCAC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGUGAUUAUUGC 110 ,,<<<<____._______>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAA.CUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 UA:UU:AAAA CUA :AA:+G :: :::: :CA +++ G: :::: U : 111 UAAUUGAAAAgCUAAG--UAAGAG---CUC-ACAGAAUCA--AAG----GAGCCAACUUG 158 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 :AA GG AG: ::C+ :: : 159 GAAAG---GGUAGGAACCA-GAGC 178 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #7772,sp|X01868.1|HSU4P Human pseudogene for U4 small nuclear RNA ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGAGCGAUUAUUGCUAAUUGAAAAAGAAAAUGCCUGCAGUUUAGAAGAUGGCUG hit 277 : 140 237 (fwd) 27.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUA CCA+UGAGG+ U+ +CCGAGG GCGAUUA:UGC 140 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUCUA-UCCGAGGAGCGAUUAUUGC 197 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU:AAAA A :AA: GC U+ C 198 UAAUUGAAAAAGA----AAAU-----GC-------------CUG---------------C 220 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 A UUU GAAG+ C + 221 A--GUUUAGAAGAUGGCUG---- 237 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----sequence: #7773,sp|X59361.1|HSU4SNRNA H.sapiens U4 snRNA ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 278 : 1 140 (fwd) 121.61 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGU GCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 1 AGCUUUGCGC-AGUGGCAGUAUCGU-GCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 57 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 58 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCAUUGGC 116 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 117 AAUUUUUGACAGUCUCUAcGGAGA 140 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #472,sp|U91321.1|HSU91321 Human Chromosome 16 BAC clone CIT987SK-A-363E6, complete sequence. ----isReversed: 0 ----hitSequence: AGCUUUGCAGUGGCAGUACCGUAGCCAAUGAGAUUUAUCCGAGACGCGAUUAUUGCUAAUUGGAAAUUUUCCCAAUACCCCACCGUGAUGACUUGAAAUAUAAUCAGCGCUGGCAAUUUUUGACAGUCUCUACGGAGA hit 279 : 213086 213223 (fwd) 80.73 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC AG GGCA:UA CGUAG CA+UGAG +UU+ +CCGAG CGCG UUA:UGC 213086 AGCUUUGC---AGUGGCAGUACCGUAGCCAAUGAGAUUUA-UCCGAGACGCGAUUAUUGC 213141 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUG AAA U+UUCCCAA:++CCC:CC : GA:GA :UG++AUAU: UC:GC :UGG: 213142 UAAUUGGAAA-UUUUCCCAAUACCCCACC-GUGAUGACUUGAAAUAUAAUCAGCGCUGGC 213199 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 213200 AAUUUUUGACAGUCUCUAcGGAGA 213223 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1197,sp|M24745.1|HSUG4PA Human U4 small nuclear RNA pseudogene. ----isReversed: 0 ----hitSequence: UGCGUUGCGCGGUGGCCGUAUGGUGGCCAAUGAGGUUUAUCCGAAGCGCGAUUAUUGCUAAUUGAAAACUUUUCGCAAUACCCCACCGUGACGACUUGCAAUAUAGUCGACAUCGGCAAUUUUUAACAGUCUCUACGGAGA hit 280 : 238 378 (fwd) 86.09 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 +C UUGCGC G GGC::UAU GU GC A+UGAGG+UU+ +CCGA GCGC AUUA::GC 238 UGCGUUGCGC-GGUGGCCGUAUGGUGGCCAAUGAGGUUUA-UCCGAAGCGCGAUUAUUGC 295 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUC CAA:++CCC:CC ::G CGAC:UG +AUAU:GUCG C:: GG: 296 UAAUUGAAAACUUUUCGCAAUACCCCACC-GUGACGACUUGCAAUAUAGUCGACAUCGGC 354 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUU + AG:C::++ +::G: 355 AAUUUUUAACAGUCUCUAcGGAGA 378 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1198,sp|M24746.1|HSUG4PB Human U4 small nuclear RNA pseudogene. ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGACAGUAUCGGAGCCAAUGAGGUUUAUCCGAGGGGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCAGCCGUGACGACUUGAAAUACAGUCGGCACUGGCAAUUUUUGACAGUCUCUAUGGAGA hit 281 : 301 441 (fwd) 112.40 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG G CA:UAUCG A:CCA+UGAGG+UU+ +CCGAGG: CGAUUA:UGC 301 AGCUUUGCAC-AGUGACAGUAUCGGAGCCAAUGAGGUUUA-UCCGAGGGGCGAUUAUUGC 358 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CC GCC ::GACGAC:+G++AUA+:GUCGGC::UGGC 359 UAAUUGAAAACUUUUCCCAAUACCCAGCC-GUGACGACUUGAAAUACAGUCGGCACUGGC 417 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 418 AAUUUUUGACAGUCUCUAuGGAGA 441 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1199,sp|M11384.1|HSUG4PSA Human U4 RNA pseudogene U4/4. ----isReversed: 0 ----hitSequence: AGCUUUGUACAGUGCCAGUAUCAGAGCCAAUGAGGUUUUUCUGAGGUGUGAUUAUUGCUAAUUGAAAACUUUUCCCAAUUAAAAACAAAAACAAAAUAAAAUUUAAAAAACACACCAGAG hit 282 : 34 153 (fwd) 49.88 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUG C AG G CA:UAUC: A CCA+UGAGG+UUU +C+GAGG :GAUUA:UGC 34 AGCUUUGUAC-AGUGCCAGUAUCAGAGCCAAUGAGGUUUU-UCUGAGGUGUGAUUAUUGC 91 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA: ::: : : +++A A : :+::: 92 UAAUUGAAAACUUUUCCCAAU-----UAA-AAA-------CAAAAA-------CAAAAUA 131 ,,,,,,,,,,,,<<<<___>>>> 121 AAUUUUUGGAAGcccuccaaggg 143 AA UUU +AA C C CC G G 132 AAAUUUAAAAAACACACC-AGAG 153 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1200,sp|M11385.1|HSUG4PSB Human U4 RNA pseudogene U4/5. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGAGCGAUUAUUGCUAAUUGAAAAAGAAAAUGCCUGCAGUUUAGAAGAUGGCUGAUAAAGAAACAGAUUCUGGAAUUAAAAAUUAAAACCUA hit 283 : 34 169 (fwd) 48.16 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUA CCA+UGAGG+ U+ +CCGAGG GCGAUUA:UGC 34 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUCUA-UCCGAGGAGCGAUUAUUGC 91 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UU:AAAA A :AA: GCC G : ++ ::A :G+U+ : U::+ +: C 92 UAAUUGAAAAAGA----AAAU-GCCUGCA-GU--UUAGAAGAUGGCUGAUAAAG--AAAC 141 ,,,,,,,,,,,,<<<<__....._>>>> 121 AAUUUUUGGAAGcccucc.....aaggg 143 A UU+UGGAA :::: + A:::: 142 AGAUUCUGGAAUUAAAAAuuaaaACCUA 169 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1201,sp|M11386.1|HSUG4PSC Human U4 RNA pseudogene U4/6. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUUGUAGCCAAUGAGGUCUAUCCGAGGCGUGAUUAUUGCUAAUAGAAACAGGAAAAUUUUUUUAAUAAAUCCUCACCUUGGUCUUCACAGGAACCACAAGGACAACAUUCUCAAUGCGAAUU hit 284 : 34 174 (fwd) 31.08 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAU UAGCCA+UGAGG+ U+ +CCGAGGCG AUUA:UGC 34 AGCUUUGCGC-AGUGGCAGUAUUGUAGCCAAUGAGGUCUA-UCCGAGGCGUGAUUAUUGC 91 ,,<<<<_.......________.__>>>>,,,,,<<<<<<<<<<<<<<______>>>>>> 61 UAgUugA.......AAACUAUU.CCcaAccgCCCgccuaagacgacauguuauauugucg 112 UA:U :A AAA U+UU : A:+ CC :C: :G::+::: ++ :::+: 92 UAAUAGAaacaggaAAAUUUUUuUAAUAAAUCCUCACCUUGGUCUUCA-CAG---GAACC 147 >>>>>>>>,,.,,,,,,,,,,<<<<___>>>> 113 gcuuuggcAA.UUUUUGGAAGcccuccaaggg 143 :C: :G: AA UU+U +A GC++++ 148 ACAAGGACAAcAUUCUCAAUGCGAAUU----- 174 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1202,sp|M11387.1|HSUG4PSD Human U4 RNA pseudogene U4/8. ----isReversed: 0 ----hitSequence: AGCUUUGCACAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGUGAUUAUUGCUAAUUGAAAAGCUAAGUAAGAGCUCACAGAAUCAAAGGAGCCAACUUGGAAAGGGUAGGAACCAGAGC hit 285 : 34 159 (fwd) 41.07 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGC C AG GGCA:UAUC UAGCCA+UGAGG+UU+ +CCGAGGCG GAUUA:UGC 34 AGCUUUGCAC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGUGAUUAUUGC 91 ,,<<<<____._______>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>> 61 UAgUugAAAA.CUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuugg 119 UA:UU:AAAA CUA :AA:+G :: :::: :CA +++ G: :::: U : 92 UAAUUGAAAAgCUAAG--UAAGAG---CUC-ACAGAAUCA--AAG----GAGCCAACUUG 139 >,,,,,,,,,,,,<<<<___>>>> 120 cAAUUUUUGGAAGcccuccaaggg 143 :AA GG AG: ::C+ :: : 140 GAAAG---GGUAGGAACCA-GAGC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1261,sp|M15956.1|HSUGU4BL Human U4B-like small nuclear RNA gene, complete cds. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUCUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCACUGGCAAUUUUUGACAGUCUCUACGGAGA hit 286 : 271 411 (fwd) 126.10 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+ U+ +CCGAGGCGCGAUUA:UGC 271 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUCUA-UCCGAGGCGCGAUUAUUGC 328 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 329 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCACUGGC 387 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 388 AAUUUUUGACAGUCUCUAcGGAGA 411 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1262,sp|M15957.1|HSUGU4CA Human U4C small nuclear RNA gene, complete cds. ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 287 : 271 411 (fwd) 130.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 271 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 328 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC A:GACGAC:UG++AUAU:GUCGGC:UUGGC 329 UAAUUGAAAACUUUUCCCAAUACCCCGCC-AUGACGACUUGAAAUAUAGUCGGCAUUGGC 387 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 388 AAUUUUUGACAGUCUCUAcGGAGA 411 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1783,sp|K00472.1|HSURU4B Human U4b small nuclear RNA (snRNA). ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 288 : 2 142 (fwd) 129.24 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC ::GACGAC:UG +AUAU:GUCGGC::UGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-GUGACGACUUGCAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----sequence: #1784,sp|K00473.1|HSURU4C Human U4c small nuclear RNA (snRNA). ----isReversed: 0 ----hitSequence: AGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCAUGACGACUUGAAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGA hit 289 : 2 142 (fwd) 130.89 bits :::::::::::::::::<<-<<<<<-<<<_________________>>>>>>>>-->>,, 1 AuCUUUGCGCUAGGGGCaaUaucguAgccAGUGAGGcUuuAaCCGAggcgcgauUAuuGC 60 A+CUUUGCGC AG GGCA:UAUCGUAGCCA+UGAGG+UU+ +CCGAGGCGCGAUUA:UGC 2 AGCUUUGCGC-AGUGGCAGUAUCGUAGCCAAUGAGGUUUA-UCCGAGGCGCGAUUAUUGC 59 ,,<<<<___________>>>>,,,,,<<<<<<<<<<<<<<______>>>>>>>>>>>>>> 61 UAgUugAAAACUAUUCCcaAccgCCCgccuaagacgacauguuauauugucggcuuuggc 120 UA:UUGAAAACU+UUCCCAA:++CCCGCC A:GACGAC:UG++AUAU:GUCGGC:UUGGC 60 UAAUUGAAAACUUUUCCCAAUACCCCGCC-AUGACGACUUGAAAUAUAGUCGGCAUUGGC 118 ,,,,,,,,,,,,<<<<__._>>>> 121 AAUUUUUGGAAGcccucc.aaggg 143 AAUUUUUG+ AG:C::++ +::G: 119 AAUUUUUGACAGUCUCUAcGGAGA 142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=0.00128133, 2d-fracLetsThru=0.000682448). Filter report: done 1.65905e+10 nucs (frac lets thru so far=0.0452409, 2d-fracLetsThru=0.0248899). Filter report: done 7.5057e+08 nucs (frac lets thru so far=0.0283223, 2d-fracLetsThru=0.0274187). done 1.65905e+10 nucs (frac lets thru so far=0.00128133, 2d-fracLetsThru=0.000682448). CPU time: 716960.01u 568.21s 199:18:48.21 Elapsed: 203:01:16