params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,68730,U43703.1,1,sp|U43703.1|SC43703 Saccharomyces cerevisiae chromosome XVI cosmid 9545.,1,0,7964,7634,68.50,AACACAUUCAACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGCCCCAUAACCUUUGUACCCCAGAGUGAGGAAAUGAAAUCGAAUUUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAUUUUGCUUUGCCGUUGCAAUUGUGAUAACUUCCUUUGGAAUUUGUUGCGAUAUUUAAUGGCGCGAUGAUCUUGACCCAUCCUAUGUGCUUCCAUUUUGGAAGGAUAGGGAUUCAUGGGUGGGUACAAAUGGCAGUCUGACAAG,Z73500.1/1688-1358 Z73499.1/461-131 X96770.1/54558-54228 U43703.1/7964-7634,7964-7634,0,330,U43703.1/7964-7634
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,69605,Y00887.1,1,sp|Y00887.1|SCDFR1 Yeast DFR1 gene for dihydrofolate reductase (EC 1.5.1.3),0,1,158,489,86.39,AACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGCCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAG,Z75143.1/859-1190 Z75144.1/158-489 M26668.1/157-488 Y00887.1/158-489,158-489,0,331,Y00887.1/158-489
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,69606,M26668.1,1,sp|M26668.1|SCDFR1A Saccharomyces cerevisiae dihydrofolate reductase (DFR1) gene; complete cds.,0,2,157,488,86.39,AACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGCCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAG,Z75143.1/859-1190 Z75144.1/158-489 M26668.1/157-488 Y00887.1/158-489,157-488,0,331,M26668.1/157-488
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,69607,X16541.1,1,sp|X16541.1|SCDFR1G Saccharomyces cerevisiae DNA for dihydrofolate reductase (EC 1.5.1.3),1,3,1167,837,86.44,AACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGCCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAG,X16541.1/1167-837,1167-837,0,330,X16541.1/1167-837
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,69613,M18578.1,1,sp|M18578.1|SCDIHRG S.cerevisiae dihydrofolate reductase gene; complete cds; and U3 small nuclear RNA (snR17A) gene.,0,4,158,488,86.44,AACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGCCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAG,M18578.1/158-488,158-488,0,330,M18578.1/158-488
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,70424,X96770.1,1,sp|X96770.1|SCLACHXVI S.cerevisiae chromosome XVI; left arm DNA,1,5,54558,54228,68.50,AACACAUUCAACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGCCCCAUAACCUUUGUACCCCAGAGUGAGGAAAUGAAAUCGAAUUUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAUUUUGCUUUGCCGUUGCAAUUGUGAUAACUUCCUUUGGAAUUUGUUGCGAUAUUUAAUGGCGCGAUGAUCUUGACCCAUCCUAUGUGCUUCCAUUUUGGAAGGAUAGGGAUUCAUGGGUGGGUACAAAUGGCAGUCUGACAAG,Z73500.1/1688-1358 Z73499.1/461-131 X96770.1/54558-54228 U43703.1/7964-7634,54558-54228,0,330,X96770.1/54558-54228
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,71634,X05499.1,1,sp|X05499.1|SCSNR17A Yeast SNR17A gene for U3 small nuclear RNA,0,6,124,454,86.44,AACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUCUUUGCCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAG,X05499.1/124-454,124-454,0,330,X05499.1/124-454
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,71635,X05498.1,1,sp|X05498.1|SCSNR17B Yeast SNR17B gene for U3 small nuclear RNA,0,7,324,654,64.81,AACACAUUCAACAGUAGGAUCAUUUCUAUAUUAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGCCCCAUAACCUUUGUACCCCAGAGUGAGGAAAUGAAAUCGAAUUUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAUUUUGCUUUGCCGUUGCAAUUGUGAUAACUUCCUUUGGAAUUUGUUGCGAUAUUUAAUGGCGCGAUGAUCUUGACCCAUCCUAUGUGCUUCCAUUUUGGAAGGAUAGGGAUUCAUGGGUGGGUACAAAUGGCAGUCUGACAAG,X05498.1/324-654,324-654,0,330,X05498.1/324-654
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,72255,M26648.1,1,sp|M26648.1|SCUG17C Yeast (S.cerevisiae) U3 small nuclear RNA (SNR17A) gene; complete sequence.,0,8,339,670,86.39,AACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGGCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAG,M26648.1/339-670,339-670,0,331,M26648.1/339-670
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,72276,M26649.1,1,sp|M26649.1|SCUR17D Yeast (S.cerevisiae) U3 small nuclear RNA.,0,9,1,332,83.68,GUCGACGUACUUCAUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGGCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAG,M26649.1/1-332,1-332,0,331,M26649.1/1-332
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,75244,Z75143.1,1,sp|Z75143.1|SCYOR235W S.cerevisiae chromosome XV reading frame ORF YOR235w,0,10,859,1190,86.39,AACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGCCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAG,Z75143.1/859-1190 Z75144.1/158-489 M26668.1/157-488 Y00887.1/158-489,859-1190,0,331,Z75143.1/859-1190
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,75245,Z75144.1,1,sp|Z75144.1|SCYOR236W S.cerevisiae chromosome XV reading frame ORF YOR236w,0,11,158,489,86.39,AACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGCCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAG,Z75143.1/859-1190 Z75144.1/158-489 M26668.1/157-488 Y00887.1/158-489,158-489,0,331,Z75144.1/158-489
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,75392,Z73499.1,1,sp|Z73499.1|SCYPL143W S.cerevisiae chromosome XVI reading frame ORF YPL143w,1,12,461,131,68.50,AACACAUUCAACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGCCCCAUAACCUUUGUACCCCAGAGUGAGGAAAUGAAAUCGAAUUUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAUUUUGCUUUGCCGUUGCAAUUGUGAUAACUUCCUUUGGAAUUUGUUGCGAUAUUUAAUGGCGCGAUGAUCUUGACCCAUCCUAUGUGCUUCCAUUUUGGAAGGAUAGGGAUUCAUGGGUGGGUACAAAUGGCAGUCUGACAAG,Z73500.1/1688-1358 Z73499.1/461-131 X96770.1/54558-54228 U43703.1/7964-7634,461-131,0,330,Z73499.1/461-131
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,75393,Z73500.1,1,sp|Z73500.1|SCYPL144W S.cerevisiae chromosome XVI reading frame ORF YPL144w,1,13,1688,1358,68.50,AACACAUUCAACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGCCCCAUAACCUUUGUACCCCAGAGUGAGGAAAUGAAAUCGAAUUUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAUUUUGCUUUGCCGUUGCAAUUGUGAUAACUUCCUUUGGAAUUUGUUGCGAUAUUUAAUGGCGCGAUGAUCUUGACCCAUCCUAUGUGCUUCCAUUUUGGAAGGAUAGGGAUUCAUGGGUGGGUACAAAUGGCAGUCUGACAAG,Z73500.1/1688-1358 Z73499.1/461-131 X96770.1/54558-54228 U43703.1/7964-7634,1688-1358,0,330,Z73500.1/1688-1358
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,76503,AL121770.1,1,sp|AL121770.1|SPAC821 S.pombe chromosome I cosmid c821.,1,14,10682,10430,77.78,UCGACGAUACUCCAUAGGAUCAUUUCUAUAGUAUACGUCCGGCUUGGGUUUCCUAACCUAGCCACAGAACUCAACACGGAUGAUGAUAGGAGGCACCGUUGCCCUCAGAGUGAGGACUUUUAAUUCUUUGAAGGCAUGCUUUUCGAUUAGGUUUUUUACCUAAUUGUUUUGCUGUCUUUCUAUGCGAUGAUCUCUUACAUGAUAUGUUUCCUUUUGGUCGUAUUAUGUAGGGCAGCUGGUGUUUUCUGACGUG,AL121770.1/10682-10430 X56982.1/38-290,10682-10430,0,252,AL121770.1/10682-10430
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,76684,AL031743.1,1,sp|AL031743.1|SPBC26H8 S.pombe chromosome II cosmid c26H8.,1,15,18723,18472,55.10,UCGACGAUACUCCAUAGGAUCAUUUCUAUAGUAUACGUCCGGCUUGGGUUUCCUAACCUAGCCACAGAACUCAACACGGAUGAUGAUAGAAGGCACCGUUGCCCGCAGAGUGAGAAUUUUUACUUCUUUGAGGAUGUGCUGAUCGAUUUGGCUUUUUGCUUAAUUGUUGUGCUAUCUUUAUUUGCGAUGAUCUCUUACAUGAUAUGUUCCUUUUGGUCGUGUCAUGUAGGGCAGCUGGUGUUUUCUGACGUG,AL031743.1/18723-18472 X56189.1/90-341,18723-18472,0,251,AL031743.1/18723-18472
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77617,X13850.1,1,sp|X13850.1|SPSNRU3 Fission yeast U3 small nuclear RNA gene,0,16,317,568,77.16,GUAUCGAUACUCCAUAGGAUCAUUUCUAUAGUAUACGUCCUUCUUGGGUUUCCUAACCUAGCCACAGAAGUGAACACGGAUGAUGAUAGGAGGCACCGUUGCCUCAGAGUGAGGACUUUUAAUUCUUUGAAGGCAUGCUUUUCGAUUAGGUUUUUUACCUAAUUGUUUUGCUGUCAGAGUAUGCGAUGAUCUCUUACAUGAUAUGUUUCCUUUUGGUCGUAUUAUGUAGGGCAGCUGGUGUUUUCUGACGUG,X13850.1/317-568,317-568,0,251,X13850.1/317-568
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77619,X56982.1,1,sp|X56982.1|SPSNU3A S. pombe snu3a gene for U3A small nuclear RNA,0,17,38,290,77.78,UCGACGAUACUCCAUAGGAUCAUUUCUAUAGUAUACGUCCGGCUUGGGUUUCCUAACCUAGCCACAGAACUCAACACGGAUGAUGAUAGGAGGCACCGUUGCCCUCAGAGUGAGGACUUUUAAUUCUUUGAAGGCAUGCUUUUCGAUUAGGUUUUUUACCUAAUUGUUUUGCUGUCUUUCUAUGCGAUGAUCUCUUACAUGAUAUGUUUCCUUUUGGUCGUAUUAUGUAGGGCAGCUGGUGUUUUCUGACGUG,AL121770.1/10682-10430 X56982.1/38-290,38-290,0,252,X56982.1/38-290
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77620,X56189.1,1,sp|X56189.1|SPSNU3B S. pombe snu3b gene for U3B small nuclear RNA,0,18,90,341,55.10,UCGACGAUACUCCAUAGGAUCAUUUCUAUAGUAUACGUCCGGCUUGGGUUUCCUAACCUAGCCACAGAACUCAACACGGAUGAUGAUAGAAGGCACCGUUGCCCGCAGAGUGAGAAUUUUUACUUCUUUGAGGAUGUGCUGAUCGAUUUGGCUUUUUGCUUAAUUGUUGUGCUAUCUUUAUUUGCGAUGAUCUCUUACAUGAUAUGUUCCUUUUGGUCGUGUCAUGUAGGGCAGCUGGUGUUUUCUGACGUG,AL031743.1/18723-18472 X56189.1/90-341,90-341,0,251,X56189.1/90-341
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,48890,V00190.1,1,sp|V00190.1|DDRNA1 Gene for small nuclear RNA D2 of slime mold (D. discoideum).,0,19,62,269,59.88,AUGACCAAACUCUUAGGAUCAUUUCUAGAGUAUCGUCUAUUAAAAUUAUUCAUCAAUAAUUUUUCCUCUUUCACAGCUAGGAUGAUGAUACACACUCACUAUACGAAAGCGUGAAACCGUUAUUAUCAAAUGAUUCAUUUAUUUGUUAUUAACAUUGAUGACCGUCUAAUUCAGGGAUGAAUUGGUUGUAUGGUGGGAUUCGUACUGG,V00190.1/62-269,62-269,0,207,V00190.1/62-269
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,49086,K00789.1,1,sp|K00789.1|DDURD2 D.discoideum D2 small nuclear RNA.,0,20,2,209,43.20,AUGACCAAACUCUUAGGAUCAUUUCUAGAGYAYYGUCUAUUAAAAUUAUUCAUCAAUAAUUUUUCCUCUUUCAUAGYYAGGAYGAYGAUACACACUCACUAUACGAAAGYGYGAAAYYGUUAUUAUCAAAUGAUUCAUUUAUUUGUUAUUAACAUUGAYGAYYGUCUAAUUCAGGGAUGAAUUGGUUGUAUGGUGGGAUUCGUACUGG,K00789.1/2-209,2-209,0,207,K00789.1/2-209
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz,7138,U27297.1,1,sp|U27297.1|EG27297 Euglena gracilis U3 small nucleolar RNA.,0,21,2,180,37.48,AGACUGUACUCCACAAGGAUCAUUUCUUGAGGAAGUAUCAGUCCGAUUCACAGAGAACACUACAAUCUUCAACAGCCACGAUGAUGACUGGCAGCUUUCCUCUCGGAGCGUGAGGCAGCGAGCGACCUCGGUCGCAUCGCAUCGAUGAUCGCAGAUGAGAGGUCAGCAAUUUGAGUGGU,U27297.1/2-180,2-180,0,178,U27297.1/2-180
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,7289,AC139728.3,1,sp|AC139728.3|AC139728 Carollia perspicillata clone 29G20; complete sequence.,0,22,90984,91193,48.25,AAGACUGUACUUUCGGGGAUCAUUUCUAUAGUUCGUCACUAGAGAAGUUUCUCUGAAUGUGUAGAAUACCCUAAACCAUGAGGAGGAGGUGCAGUGUUCUCUCCUGAGCAAUACCUCUUCUGGUAUUGCUUUUAGAACUGCCAAUAGCCAUUGAUGAUUGUUCUUCUCUUCCUUCAGAAGAGUAAGAGGGGGAGAACACAGUCUGAGUGG,AC139728.3/90984-91193,90984-91193,0,209,AC139728.3/90984-91193
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,15032,AF176810.1,1,sp|AF176810.1|AF176810 Bos taurus U3 small nuclear RNA; partial sequence.,0,23,1,214,87.57,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCCGAAACCACGAGGAGGAGAUAAAGCGUUCUCUUCUGAGCGUGAAGUCGGCUUUGGGUGUUGCUUCUGCAGCUGCCGUUAGCCAUUGAUGAUCGUUCUUCUUUUCCUUUUAGGAGAUGAAGAGGGAGAGAACGUAAUCUGAGUGG,AF176810.1/1-214,1-214,0,213,AF176810.1/1-214
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4769,AC074336.14,1,sp|AC074336.14|AC074336 Mus musculus Strain C57BL6/J chromosome 1 BAC; RP23-366C17; Complete Sequence; complete sequence.,0,24,194216,194429,95.05,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCUGAAACCACGAGGACGAGACGUAGCGUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCAUGAUUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCAGGAGGGUGAGAGGGAAGGAACGCAGUCUGAGUGG,AC074336.14/194216-194429 X04258.1/312-525 AC119809.10/3290-3503,194216-194429,0,213,AC074336.14/194216-194429
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5057,AC098642.5,1,sp|AC098642.5|AC098642 Genomic sequence for Mus musculus; clone RP23-270O7; complete sequence.,1,25,48519,48306,89.34,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCUGAAACCACGAGGACGAGACGUAGCAUCCCCUACUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGAUUGCAGCUGCCUCUUGCCAUUGAUGAUCAUUCUUCUCUCCUUCGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,AC098642.5/48519-48306 AL603682.36/56958-57171,48519-48306,0,213,AC098642.5/48519-48306
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5330,AC109138.10,1,sp|AC109138.10|AC109138 Mus musculus; clone RP23-41B18; complete sequence.,1,26,86930,86717,95.45,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCUGAAACCACGAGGACGAGACAUAGCGUCCCCUCCUGAGCGUGAAGCUGGCUCUAGGUGCUGCUUGAUUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,X14853.1/167-380 AC109138.10/86930-86717,86930-86717,0,213,AC109138.10/86930-86717
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,5713,AC119809.10,1,sp|AC119809.10|AC119809 Mus musculus; clone RP24-505E24; complete sequence.,0,27,3290,3503,95.05,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCUGAAACCACGAGGACGAGACGUAGCGUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCAUGAUUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCAGGAGGGUGAGAGGGAAGGAACGCAGUCUGAGUGG,AC074336.14/194216-194429 X04258.1/312-525 AC119809.10/3290-3503,3290-3503,0,213,AC119809.10/3290-3503
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24100,AL603682.36,1,sp|AL603682.36|AL603682 Mouse DNA sequence from clone RP23-235J5 on chromosome 11,0,28,56958,57171,89.34,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCUGAAACCACGAGGACGAGACGUAGCAUCCCCUACUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGAUUGCAGCUGCCUCUUGCCAUUGAUGAUCAUUCUUCUCUCCUUCGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,AC098642.5/48519-48306 AL603682.36/56958-57171,56958-57171,0,213,AL603682.36/56958-57171
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24875,AL669902.8,1,sp|AL669902.8|AL669902 Mouse DNA sequence from clone RP23-459P8 on chromosome 11,0,29,56811,57024,99.12,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACGUAGCGUUCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGACUGCAGCUGCCUCCUGCCAUUGAUGAUCGUUCUUCCCUCCUUUGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M23706.1/530-743 M23707.1/503-716 AL669902.8/84942-85155 AL669902.8/56811-57024 AL669902.8/62201-62414 M23705.1/702-915 M60173.1/1085-1298 AL669902.8/75860-76073,84942-85155 56811-57024 62201-62414 75860-76073,0,213,AL669902.8/56811-57024
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24875,AL669902.8,1,sp|AL669902.8|AL669902 Mouse DNA sequence from clone RP23-459P8 on chromosome 11,0,30,62201,62414,99.12,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACGUAGCGUUCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGACUGCAGCUGCCUCCUGCCAUUGAUGAUCGUUCUUCCCUCCUUUGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M23706.1/530-743 M23707.1/503-716 AL669902.8/84942-85155 AL669902.8/56811-57024 AL669902.8/62201-62414 M23705.1/702-915 M60173.1/1085-1298 AL669902.8/75860-76073,84942-85155 56811-57024 62201-62414 75860-76073,0,213,AL669902.8/62201-62414
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24875,AL669902.8,1,sp|AL669902.8|AL669902 Mouse DNA sequence from clone RP23-459P8 on chromosome 11,0,31,75860,76073,99.12,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACGUAGCGUUCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGACUGCAGCUGCCUCCUGCCAUUGAUGAUCGUUCUUCCCUCCUUUGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M23706.1/530-743 M23707.1/503-716 AL669902.8/84942-85155 AL669902.8/56811-57024 AL669902.8/62201-62414 M23705.1/702-915 M60173.1/1085-1298 AL669902.8/75860-76073,84942-85155 56811-57024 62201-62414 75860-76073,0,213,AL669902.8/75860-76073
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,24875,AL669902.8,1,sp|AL669902.8|AL669902 Mouse DNA sequence from clone RP23-459P8 on chromosome 11,0,32,84942,85155,99.12,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACGUAGCGUUCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGACUGCAGCUGCCUCCUGCCAUUGAUGAUCGUUCUUCCCUCCUUUGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M23706.1/530-743 M23707.1/503-716 AL669902.8/84942-85155 AL669902.8/56811-57024 AL669902.8/62201-62414 M23705.1/702-915 M60173.1/1085-1298 AL669902.8/75860-76073,84942-85155 56811-57024 62201-62414 75860-76073,0,213,AL669902.8/84942-85155
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26605,AL844548.7,1,sp|AL844548.7|AL844548 Mouse DNA sequence from clone RP23-263D22 on chromosome 2,0,33,113077,113289,74.98,AAGACUAUACUUUCAGGGAUCACUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGGCUACGUAGAGCACCCGAAACCAGGAGGAUGAGACAUACCUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGAGUGCAGCUGCCUCUUGUCAUUGAUGGUUGUUCUUCUGUCCUUCAGGAGGGUGAGAGGGAGGGAAUGCAGUCUGAGUGG,X14852.1/160-372 AL844548.7/113077-113289,113077-113289,0,212,AL844548.7/113077-113289
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,69343,X63743.1,1,sp|X63743.1|MMSNRNA M.musculus DNA sequence for U3A snRNA,0,34,815,1026,90.75,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUUGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGAGGAGACAGAGUGUCCUUUCCUGAGCGUGAAGCCGGCUUUUAGUGCUGCAUUUUGCAACUGCUAUCUGCCAUUGAUGAUCGUUCUCAACUCUCUUGAGGGUUGAGAGGGAGAGGACACAGUCUGAGUGG,X63743.1/815-1026,815-1026,0,211,X63743.1/815-1026
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,69349,X04258.1,1,sp|X04258.1|MMSNU3P Mouse U3 RNA pseudogene,0,35,312,525,95.05,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCUGAAACCACGAGGACGAGACGUAGCGUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCAUGAUUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCAGGAGGGUGAGAGGGAAGGAACGCAGUCUGAGUGG,AC074336.14/194216-194429 X04258.1/312-525 AC119809.10/3290-3503,312-525,0,213,X04258.1/312-525
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,73401,M23705.1,1,sp|M23705.1|MMU3B1A Mus musculus small nuclear RNA (U3B.1) gene.,0,36,702,915,99.12,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACGUAGCGUUCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGACUGCAGCUGCCUCCUGCCAUUGAUGAUCGUUCUUCCCUCCUUUGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M23706.1/530-743 M23707.1/503-716 AL669902.8/84942-85155 AL669902.8/56811-57024 AL669902.8/62201-62414 M23705.1/702-915 M60173.1/1085-1298 AL669902.8/75860-76073,702-915,0,213,M23705.1/702-915
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,73402,M23706.1,1,sp|M23706.1|MMU3B2A Mus musculus small nuclear RNA (U3B.2) gene.,0,37,530,743,99.12,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACGUAGCGUUCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGACUGCAGCUGCCUCCUGCCAUUGAUGAUCGUUCUUCCCUCCUUUGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M23706.1/530-743 M23707.1/503-716 AL669902.8/84942-85155 AL669902.8/56811-57024 AL669902.8/62201-62414 M23705.1/702-915 M60173.1/1085-1298 AL669902.8/75860-76073,530-743,0,213,M23706.1/530-743
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,73403,M23707.1,1,sp|M23707.1|MMU3B3A Mus musculus small nuclear RNA (U3B.3) gene.,0,38,503,716,99.12,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACGUAGCGUUCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGACUGCAGCUGCCUCCUGCCAUUGAUGAUCGUUCUUCCCUCCUUUGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M23706.1/530-743 M23707.1/503-716 AL669902.8/84942-85155 AL669902.8/56811-57024 AL669902.8/62201-62414 M23705.1/702-915 M60173.1/1085-1298 AL669902.8/75860-76073,503-716,0,213,M23707.1/503-716
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,73406,X14852.1,1,sp|X14852.1|MMU3PS15 Mouse U3(psi)3B.15 DNA for U3 small nuclear RNA processed pseudogene,0,39,160,372,74.98,AAGACUAUACUUUCAGGGAUCACUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGGCUACGUAGAGCACCCGAAACCAGGAGGAUGAGACAUACCUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGAGUGCAGCUGCCUCUUGUCAUUGAUGGUUGUUCUUCUGUCCUUCAGGAGGGUGAGAGGGAGGGAAUGCAGUCUGAGUGG,X14852.1/160-372 AL844548.7/113077-113289,160-372,0,212,X14852.1/160-372
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,73407,X14853.1,1,sp|X14853.1|MMU3PS4 Mouse U3(psi)3B.4 DNA for U3 small nuclear RNA processed pseudogene,0,40,167,380,95.45,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCUGAAACCACGAGGACGAGACAUAGCGUCCCCUCCUGAGCGUGAAGCUGGCUCUAGGUGCUGCUUGAUUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,X14853.1/167-380 AC109138.10/86930-86717,167-380,0,213,X14853.1/167-380
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,73408,X14854.1,1,sp|X14854.1|MMU3PS9 Mouse U3(psi)3B.9 DNA for U3 small nuclear RNA processed pseudogene,0,41,213,426,85.81,AGGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAAAGGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGAUGUAGCGUCCCCUCCUAAGUGUGAAGCCGGUUCUAGGUGCUGCUUGAUUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCCCUCCUUCAGGAGGGUGAGAGGGAGAGAACGCAGUCUGAGUGG,X14854.1/213-426,213-426,0,213,X14854.1/213-426
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,76586,M60173.1,1,sp|M60173.1|MMUG3B4 Mouse small nuclear RNA (U3B.4) gene.,0,42,1085,1298,99.12,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACGUAGCGUUCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUGACUGCAGCUGCCUCCUGCCAUUGAUGAUCGUUCUUCCCUCCUUUGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M23706.1/530-743 M23707.1/503-716 AL669902.8/84942-85155 AL669902.8/56811-57024 AL669902.8/62201-62414 M23705.1/702-915 M60173.1/1085-1298 AL669902.8/75860-76073,1085-1298,0,213,M60173.1/1085-1298
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,583,AB007644.1,1,sp|AB007644.1|AB007644 Arabidopsis thaliana genomic DNA; chromosome 5; TAC clone:K19P17.,0,43,28031,28246,79.20,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGG,AB007644.1/28031-28246,28031-28246,0,215,AB007644.1/28031-28246
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,1097,AB013387.1,1,sp|AB013387.1|AB013387 Arabidopsis thaliana genomic DNA; chromosome 5; TAC clone:K18G13.,0,44,24664,24878,72.81,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCUUUUACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCCACGAUCGUCUUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGG,AB013387.1/24664-24878,24664-24878,0,214,AB013387.1/24664-24878
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,1519,AB017066.1,1,sp|AB017066.1|AB017066 Arabidopsis thaliana genomic DNA; chromosome 5; P1 clone:MGN6.,1,45,17528,17314,67.31,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUUACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUUCGGUGCUGUAGAGGAUCGUUACUCGGUUCGGUUCUACCUUGCUGGGGUGGUCGCACGGCGGUCUGACAGG,AB017066.1/17528-17314,15263-15049 17528-17314,0,214,AB017066.1/17528-17314
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,1519,AB017066.1,1,sp|AB017066.1|AB017066 Arabidopsis thaliana genomic DNA; chromosome 5; P1 clone:MGN6.,1,46,15263,15049,72.49,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUAAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUUGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUACCCUAGCCGGGGUGGUCGCACGGCGGUCUGACAGG,AB017066.1/15263-15049,15263-15049 17528-17314,0,214,AB017066.1/15263-15049
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,1683,AB018115.1,1,sp|AB018115.1|AB018115 Arabidopsis thaliana genomic DNA; chromosome 5; P1 clone:MJP23.,1,47,11504,11290,76.32,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGG,X58068.1/103-317 AB018115.1/11504-11290,11504-11290,0,214,AB018115.1/11504-11290
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,8834,AC007067.4,1,sp|AC007067.4|AC007067 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1; complete sequence.,0,48,50711,50924,68.50,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUAAGGAGACAGGCCCUAAACCCUGGUUGAUGAACCAUGACCGUGCGGUCAGAGCGUGAUUGAUGGCUACGAUCGUCUUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUUGGUCUUCCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGG,AC007067.4/50711-50924,50711-50924,0,213,AC007067.4/50711-50924
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9532,AC093490.2,1,sp|AC093490.2|AC093490 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08; complete sequence.,1,49,14113,13896,64.35,CGACCUUACUUGAACAGGAUCUGUUCUACAGGCUCGUACCGUUGCAUCCUUUACCAAUAAGGAGGCAAGCUCUCAAGUCUGGUUGAUGCCGACAUAACCUCCGGGCCAGAGCGUGAUUUUAACGGCUAGGAUGCAUGUUUGAGCCAUCCGACGGCUGCAGAGGAUCGUUCCUGCCUGGUUCACUCCGGUGCAGGGUGGCCCAGAGGUUGUCUGACAGA,AC093490.2/14113-13896,14113-13896,0,217,AC093490.2/14113-13896
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,9725,AC123596.12,1,sp|AC123596.12|AC123596 Medicago truncatula clone mth1-17n5; complete sequence.,1,50,60479,60268,49.96,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUUGUACUACUGUGUCCUUGAUUUCUAAGGAGAUAGGAACAUAUGUCUGGUAGAUGAGUUGUGACCGUGUGAUCAGAGCGUGAUUAACGGCCAGGAUGAUGUGUGCAUCAUCUUCAGCUGUAGAUGAUCGUUCUUGGCCUAGUUCAACUAACCGGGAUGGUCACAUGGUUGUCUGACAGA,AC123596.12/60479-60268,60479-60268,0,211,AC123596.12/60479-60268
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,99643,AP004474.1,1,sp|AP004474.1|AP004474 Lotus corniculatus var. japonicus genomic DNA; chromosome 1; clone:LjT13B22; TM0009.,0,51,40163,40379,46.88,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACACUGACCGUGUGAUCAGAGCGUGAUUAAUAGUCGUCCGAUUGACCUUCGGGUUCAUCAGAUCGACGGUGGAGGAUCGUUCUCAGCGGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGACAGG,AP004474.1/40163-40379 AP006393.1/39231-39015,40163-40379,0,216,AP004474.1/40163-40379
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,100251,AP006393.1,1,sp|AP006393.1|AP006393 Lotus corniculatus var. japonicus genomic DNA; chromosome 1; clone:LjT03B16; TM0276.,0,52,89759,89965,41.39,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACCAUGACCGUGUGAUCAGAGAGUCGUCCGAUUAACCUUUGGGUUCAUCUGAUUGACGGUGGAGGAUUGUUCUCAGCUGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGAUAGA,AP006393.1/89759-89965,39231-39015 89759-89965,0,206,AP006393.1/89759-89965
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,100251,AP006393.1,1,sp|AP006393.1|AP006393 Lotus corniculatus var. japonicus genomic DNA; chromosome 1; clone:LjT03B16; TM0276.,1,53,39231,39015,46.88,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACACUGACCGUGUGAUCAGAGCGUGAUUAAUAGUCGUCCGAUUGACCUUCGGGUUCAUCAGAUCGACGGUGGAGGAUCGUUCUCAGCGGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGACAGG,AP004474.1/40163-40379 AP006393.1/39231-39015,39231-39015 89759-89965,0,216,AP006393.1/39231-39015
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119321,AL137898.1,1,sp|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome 3; BAC clone T20K12,1,54,44750,44536,70.43,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUAAGGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGGCCGUGCGAUCAGAGCGUGAUUGACGGCUACGAUCGUCUUAGGACGCAUCUGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGCCGGGGUGGUUGCACGGCGGUCUGACAGG,AL137898.1/44750-44536,44750-44536,0,214,AL137898.1/44750-44536
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119561,X52629.1,1,sp|X52629.1|ATU3BSNR A.thaliana gene for U3B small nuclear RNA (snRNA),0,55,326,541,81.17,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCAGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGG,X52629.1/326-541,326-541,0,215,X52629.1/326-541
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119562,X52630.1,1,sp|X52630.1|ATU3CSNR A.thaliana U3C snRNA gene,0,56,530,744,79.68,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCUUAAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUUGGAUGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGUCGGGGUGGUCGCACGGCGGUCUGACAGG,X52630.1/530-744,530-744,0,214,X52630.1/530-744
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119563,X58068.1,1,sp|X58068.1|ATU3D A.thaliana U3D snRNA gene,0,57,103,317,76.32,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGG,X58068.1/103-317 AB018115.1/11504-11290,103-317,0,214,X58068.1/103-317
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,188164,AL512546.1,1,sp|AL512546.1|H0410G08 Oryza sativa genomic DNA; chromosome4; BAC clone: H0410G08; complete sequence.,0,58,31303,31517,76.18,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUGAGGAGGCAAGCACUUAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUAACGGCCGGAUCACUGGCUGAUUUGAUCCCACGGCUUUAGAGGAUCGUUUCUUGCCGGGCCUCGCCUGGCCAGGAUGGCUCUCAGGUUGUCUGACAGG,AL512546.1/31303-31517,31303-31517,0,214,AL512546.1/31303-31517
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,192874,X14411.1,1,sp|X14411.1|LEU3SNRN Tomato U3 small nuclear RNA gene,0,59,489,703,66.93,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCAUUGUAUCCUUGAAUUCUAAGGAGACAGGAAUCCAAGUCUGGUUGAUGAAGCAUGGCCAUGUGACCAGAGCGUGAUUAACAGCUAUCCAUGGUUUCUCGAGCUGUGGUUACAGUAGAUGAUCGUUCUUAGACCCUUAAUCUCAGGCCUAAGAUGGUCUCAUGGCUGUCUGACAGA,X14411.1/489-703,489-703,0,214,X14411.1/489-703
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,198574,AL606444.3,1,sp|AL606444.3|OSJN00019 Oryza sativa genomic DNA; chromosome 4; BAC clone: OSJNBa0043L09.,1,60,140423,140209,72.34,CGACCUUACUUGAACGGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUUAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUAACGGCCGGAUCACUGGCUGAUUUGAUCCCACGGCUGUAGAGGAUCGUUUCUUGCCGGGCCUCGCCUGGCCAGGAUGGCUCUCAGGUUCUCUGACAGG,AL606444.3/140423-140209,140423-140209,0,214,AL606444.3/140423-140209
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,199205,X79685.1,1,sp|X79685.1|OSU3SNRN O.sativa L. (Indica cv.IR24) U3 snRNA gene promoter,0,61,140,354,79.34,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUUAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUAACGGCCGGAUCACUGGCUGAUUUGAUCCCACGGCUGUAGAGGAUCGUUUCUUGCCGGGCCUCGCCUGGCCAGGAUGGCUCUCAGGUUGUCUGACAGG,X79685.1/140-354,140-354,0,214,X79685.1/140-354
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,209225,X63065.1,1,sp|X63065.1|TAU3SNRA T.aestivum U3 snRNA gene,0,62,859,1073,84.54,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGCUGCAUCCUUUACCAAUAAGGAGGCAAGCACUUCAGUCUGGUUGAUGCAUCUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUUCCCUUAUGGGGGCAAUCCACGGCUGUAGAGGAUCGUUCCUGCCUUGCUCAUGCUUGUGCAGGGUGGCCCAGAGGUUGUCUGACAGA,X63065.1/859-1073,859-1073,0,214,X63065.1/859-1073
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,214076,Z29641.1,1,sp|Z29641.1|ZMU3SNRNG Zea mays of USE gene encoding U3snRNA.,0,63,760,980,99.58,CGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACUGUUGCAUCUUUGAUUAAUAAGAAGGCAAGUACUUAAACCUGGUUGAUGAGAAUUUGACCUGUGGGCCAGAGCGUGAUUUAACGGCCAGGACUUUGCCUUGGUGCAUUGUCUGGAGCUGCAGAUGAUCGUUCUUGGCCAGGCUUAAUGUCUGGCUAGGGUGGCCUACAGGCUGUUUGACAGG,Z29641.1/760-980,760-980,0,220,Z29641.1/760-980
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,13581,K00780.1,1,sp|K00780.1|RN3B Rat U3B small nuclear RNA.,0,64,1,214,103.49,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACAUAGCGUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUCUGUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCGGGGGGGUAAGAGGGAGGGAACGCAGUCUGAGUGG,K00780.1/1-214,1-214,0,213,K00780.1/1-214
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,19702,V01267.1,1,sp|V01267.1|RNRNA3 Rattus norvegicus U3 snRNA,0,65,2,213,88.58,GUGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCCCACGAAACCACGAGGACGAGACAUAGCGUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUCUGCCUCUUGCCAUUGGCAGCUGAUGAUCGUCUUCUCUCCUUCGGGGGGGUAAGAGGGAGGGAACGCAGUCUGAGUGG,V01267.1/2-213,2-213,0,211,V01267.1/2-213
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20793,X02717.1,1,sp|X02717.1|RNU3B1 Rat gene for small nuclear RNA U3B (U3B.7),0,66,550,763,100.49,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACAUAGCGUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUCUGUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCGGGAGGGUAAGAGGGAGGGAACGCAGUCUGAGUGG,X02717.1/550-763,550-763,0,213,X02717.1/550-763
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20794,X02718.1,1,sp|X02718.1|RNU3B2 Rat gene for small nuclear RNA U3B (U3B.4),0,67,121,334,101.09,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGACGAGACAUAGCGUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUCUGUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCGGGAGAGUAAGAGGGAGGGAACGCAGUCUGAGUGG,X02718.1/121-334,121-334,0,213,X02718.1/121-334
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20795,X02722.1,1,sp|X02722.1|RNU3D Rat gene for small nuclear RNA U3D,0,68,550,762,97.90,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGAGGAGACGUAGCGUUCUCUCCUGAGCGUGAAGCCGGCUCUUAGUGUUGCUUCCUGCAACUGCUAUUGGCCAUUGAUGAUCGUUCUCGAGCCUCUCUGAGGUUCGAGAGGGAGAGAACGCAGUCUGAGUGG,X02722.1/550-762,550-762,0,212,X02722.1/550-762
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20796,X02719.1,1,sp|X02719.1|RNU3P1 Rat pseudogene for small nuclear RNA U3 (H3.1),0,69,51,263,86.05,AAGACCAUACUUUCAAGGAUCAUUUUUAUAGUUCGUUACUAGAGAAGUUGCUCUGACUGUGUGGAACACUGAAACCAUGAGGAUGAGACAUAGUGUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUCUGUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCCGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,X02719.1/51-263,51-263,0,212,X02719.1/51-263
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,20797,X02720.1,1,sp|X02720.1|RNU3P2 Rat pseudogene for small nuclear RNA U3 (H3.3),0,70,51,260,75.95,AGGACUAUACUUUCAUGGAUCAUUUCUAUAGUUUGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACAAAGACGAGACAUAGCGCCCCCUCCUGAGCGUGAAGCUGGCUCUAGGUGCUGCUUCUGUGCAGCUGCCUUUUGCCAUUGAUGAUCGUUCUCUCUUCGGGAGAGUGAGAGGGAGGGAACACAGUCUGAGUGG,X02720.1/51-260,51-260,0,209,X02720.1/51-260
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21444,M11466.1,1,sp|M11466.1|RNUG3PSA Rat U3 small nuclear RNA pseudogene; clone U3-1.,0,71,121,331,76.67,AGGACUAUACUUUCAUGGAUCAUUUCUAUAGUUUGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACAAAGACGAGACAUAGCGCCCCCUCCUGAGCGUGAAGCUGGCUCUAGGUGCUGCUUCUGUGCAGCUGCCCUUUGCCAUUGAUGAUCGUUCUCUCCUUCGGGAGAGUGAGAGGGAGGGAACACAGUCUGAGUGG,M11466.1/121-331,121-331,0,210,M11466.1/121-331
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21445,M11467.1,1,sp|M11467.1|RNUG3PSB Rat U3 small nuclear RNA pseudogene; clone U3-2.,0,72,117,339,53.96,AAGACUAUACUUUUAGGGAUCAUUUCCAUAGUUUGUUACUAGAAAAGUUUCCCUGACUGUGUAGAGCACCCGAAGCCAUGAGGACGAGAAACAGCAAACAGCAUCCCCUCCUGAGUGUGAAGCCGGCUCUAGGUGCUGCUUCUGCGUGGCUGCCUCUUGCCACUAACGAUCUCGUCCUUCACUCCUACGGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M11467.1/117-339,117-339,0,222,M11467.1/117-339
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21446,M11468.1,1,sp|M11468.1|RNUG3PSC Rat U3 small nuclear RNA pseudogene; clone U3-3.,0,73,114,327,90.53,AAGACCAUACUUUCAAGGAUCAUUUUUAUAGUUCGUUACUAGAGAAGUUGCUCUGACUGUGUGGAACACCUGAAACCAUGAGGAUGAGACAUAGUGUCCCCUCCUGAGCGUGAAGCCGGCUCUAGGUGCUGCUUCUGUGCAGCUGCCUCUUGCCAUUGAUGAUCGUUCUUCUCUCCUUCCGGAGGGUGAGAGGGAGGGAACGCAGUCUGAGUGG,M11468.1/114-327,114-327,0,213,M11468.1/114-327
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,21496,J01884.1,1,sp|J01884.1|RNUR3A Rat U3A small nuclear RNA.,0,74,1,214,103.05,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCGUUACUAGAGAAGUUUCUCUGACUGUGUAGAGCACCCGAAACCACGAGGAGGAGACGUAGCGUUCUCUCCUGAGCGUGAAGCCGGCUCUUAGUGUUGCUUCCGUGCAACUGCUAUUGGCCAUUGAUGAUCGUUCUCGGUCCUCUCUGAGGGGCGAGAGGGAGAGAACGCAGUCUGAGUGG,J01884.1/1-214,1-214,0,213,J01884.1/1-214
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,50068,X07319.1,1,sp|X07319.1|XBSNRNU3 Xenopus borealis U3 snRNA,0,75,1,197,56.44,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGGUUUUACCUGGUGAGAUGUGCUCUAAAGUGUCUGAACUCACAAACCACGAGGAAGAGCGUCAGUGUCUUCUCCUGAGCGUGAAGUGAGCUCUCAGUGCUGCUUCAUUGUGGCUGCUGUUUGCUAUUGAUGAACGUUCUACUUCCCCUUUAUUAUUGGGGAGAUGGA,X07319.1/1-197,1-197,0,196,X07319.1/1-197
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,51921,X07318.1,1,sp|X07318.1|XLSNRNU3 Xenopus laevis U3 snRNA,0,76,1,219,84.84,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGGUUGUACCUGGUGAAAUGUGCUCGAAAGUGUCUGAACUCACAAACCACGAGGAAGAGCGUCAGUGUUUUCUCCUGAGCGUGAAGUGAGCUCACAGUGCUGCUUCAUUGUGGCUGCUGUUUGCUAUUGAUGAACGUUCUGCUCCCCUUUAUUAUUGGGGAGAUAGAGGGAGAGAACACAAGCUGAGUGG,X07318.1/1-219,1-219,0,218,X07318.1/1-219
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,52062,Z12613.1,1,sp|Z12613.1|XLU3AG X.laevis U3A gene for U3 small nuclear RNA,0,77,694,912,88.39,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGGUUGUACCUGGUGAAAUGUGCUCGAAAGUGUCUGAACUCACAAACCACGAGGAAGAGCGUCAGUGUUCUCUCCUGAGCGUGAAGUGAGCUCACAGUGCUGCUUCAUUGUGGCUGCUGUUUGCUAUUGAUGAACGUUCUGCUCCCCUUUAUUAUUGGGGAGAUGGAGGGAGAGAACACAGGCUGAGUGG,Z12613.1/694-912,694-912,0,218,Z12613.1/694-912
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz,9590,AC003014.1,1,sp|AC003014.1|AC003014 Human PAC clone RP1-290B4 from Xq23; complete sequence.,0,78,12062,12276,46.16,UGAAGACUAUUUUCAAGGUUCAUUUCUAUAGUUCACUACUGGAGAAGUUUCUCUGAACAUGUGGAACACCAGGAAACAUGAGGAAGAAGCACAGCAUUCUCUCCUAAAUGUGAAGCCAGCUGUUGGUGUUGCUUUGCUAUAACUGCUAUUUGCCAUUGAUGAUUAUUUUCCUCUUCUUCCCAGAGAGUAAGAGGGAGAGGAUGCAGUCUGUGUGG,AC003014.1/12062-12276,12062-12276,0,214,AC003014.1/12062-12276
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,672,AC005378.2,1,sp|AC005378.2|AC005378 Homo sapiens PAC clone RP5-1137M13 from 7q33-q35; complete sequence.,1,79,79834,79620,42.08,CUAGUAACACUUCCAUGCACCAUUUCUAUAGUUUCUUACCAGAGAAGUUUCUCUGAACAUGUGGAGCACCGGAAACCACGAGGAGGCGGCUCAGCAUUCACUCCUGAGCAUGAAGCUGGCUCUUGGUGGUGCUUCUCUGCAAUUGCCUUUUGCUGCUGAUGAUCACUCUUCUCUUCCUUUGGGAGAGUGAAAGGGAAAGGAAGCCAUCUGAAGGG,AC083849.6/28395-28609 AC005378.2/79834-79620,79834-79620,0,214,AC005378.2/79834-79620
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1370,AC006515.7,1,sp|AC006515.7|AC006515 Homo sapiens 3p22-7 PAC RPCI5-1053D16 (Roswell Park Cancer Institute Human PAC Library) complete sequence.,1,80,57464,57254,47.96,AAUUGUAUACUUUCAGGGAUCAUUCCAUAGGUUGUUACUAGAGAAGUUUUUUUAGAUGUGUAGAACACUGGAAACCACGAGGAGGAGGCGCAGCAUUCUCUCUUGACCAUGAAGCCGGCUCUUGGUGUUGUUUCAUUGCAACUGUCAUUUGCCAUUGAUGAUCGUUCUCUUCCUCUGGGAGAGUAAGAGGGAGAGGACACAGUUUGAGUGG,AC006515.7/57464-57254 AC010170.3/130706-130496,57464-57254,0,210,AC006515.7/57464-57254
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1945,AC007952.15,1,sp|AC007952.15|AC007952 Homo sapiens chromosome 17; clone RP11-160E2; complete sequence.,0,81,42151,42366,99.36,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCCCGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AC007952.15/44375-44160 AJ009617.5/7742-7957 AC007952.15/42151-42366,44375-44160 92875-92660 42151-42366,0,215,AC007952.15/42151-42366
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1945,AC007952.15,1,sp|AC007952.15|AC007952 Homo sapiens chromosome 17; clone RP11-160E2; complete sequence.,1,82,92875,92660,96.81,AAGGCUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUUUGAACGUGUAGAGCACCGAAAACCCCGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AC007952.15/92875-92660,44375-44160 92875-92660 42151-42366,0,215,AC007952.15/92875-92660
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,1945,AC007952.15,1,sp|AC007952.15|AC007952 Homo sapiens chromosome 17; clone RP11-160E2; complete sequence.,1,83,44375,44160,99.36,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCCCGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AC007952.15/44375-44160 AJ009617.5/7742-7957 AC007952.15/42151-42366,44375-44160 92875-92660 42151-42366,0,215,AC007952.15/44375-44160
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,2532,AC008929.3,1,sp|AC008929.3|AC008929 Homo sapiens chromosome 5; complete sequence.,0,84,76720,76932,60.52,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGCUCAUUACUAGAGAAGUUCCCCUGAACGUGUAGAACACUGGCAACCAUGAGGAGGACAUGCAGUGUUCUGUCCUGAGUGUGAAGCUGGGUCUUGGUGUUGCUUUGCUGCAAGUACCAUUUGCCACUGAUGAUUGUUUUUGUCUCCCUCUGGGACAGUAAGGGAAAGGACACAGUCUGAGUGA,AC008929.3/76720-76932 AC027347.5/7814-7602,76720-76932,0,212,AC008929.3/76720-76932
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,3100,AC010170.3,1,sp|AC010170.3|AC010170 Homo sapiens 3p22-21.3 BAC RPCI11-487J21 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,85,130706,130496,47.96,AAUUGUAUACUUUCAGGGAUCAUUCCAUAGGUUGUUACUAGAGAAGUUUUUUUAGAUGUGUAGAACACUGGAAACCACGAGGAGGAGGCGCAGCAUUCUCUCUUGACCAUGAAGCCGGCUCUUGGUGUUGUUUCAUUGCAACUGUCAUUUGCCAUUGAUGAUCGUUCUCUUCCUCUGGGAGAGUAAGAGGGAGAGGACACAGUUUGAGUGG,AC006515.7/57464-57254 AC010170.3/130706-130496,130706-130496,0,210,AC010170.3/130706-130496
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,4297,AC013402.9,1,sp|AC013402.9|AC013402 Homo sapiens BAC clone RP11-134N15 from 2; complete sequence.,0,86,38350,38561,58.07,AAGACUAUUCUUCUAGGGAUCUUUUCUAUAGUUCAGUACCAGAGAUGGUUCUCUGACAGUGUGGAGCACCAGAAACCAUGAGAAGGAGGCACAGCAAUCUCUCCUGAGCAUGGAGCCUGCUCUUGGUGUUGUUUUGCUGCAGCUGCUGUUUGCCAUUGAUGAUCGUUCUCUUCUUUCAGGAGAGUAAGAAGGCGAGGAUGCAGUCUGAGUGG,AC013402.9/38350-38561,38350-38561,0,211,AC013402.9/38350-38561
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,5897,AC022616.9,1,sp|AC022616.9|AC022616 Homo sapiens chromosome 8; clone RP11-726G23; complete sequence.,0,87,186616,186827,44.51,AAUGCUAUACUUUCAUGGGUCAUUUCUAUAGUUUGUUAUUAGAGAAGUUUCUCUGAAUGUGUUGAGCACCAGAAACCACGAGGAGAUGCAGCAUUCUCUCCUGAACGGGAAGCCAGCUUUUGGCAUUGCUUUGAUGCAACUACCAUUUGCCAUUGAUGGCAAUGCAUCGCUUCCUCUAGGAGUGUAAGAGGGAGUGGAUGCAGUCAGAGUGG,AC022616.9/186616-186827 AC127487.5/48044-47833,186616-186827,0,211,AC022616.9/186616-186827
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6541,AC025614.12,1,sp|AC025614.12|AC025614 Homo sapiens chromosome 3 clone RP11-69K20; complete sequence.,1,88,45521,45307,70.86,AAGACUAUACUUUGAGGGAUCAUUUCUAUAGUUUGUUACUGGAGAAGUUUCUCUGAAUAUGUAGAGCACCACAAAUCACGAGGAAAAAGCGCAGCAUUCUCUCCUGAGCAUGAAGCCAGUUUUCAGUGUUGCUUCGAUGUAACUGCCUUCUGCCCUUGAUGAUCAUUCUUCUCUCCUCCCUGGAGAGUAAGAGGGAGAGGAGGCAGUCUGAGUGG,AC025614.12/45521-45307,45521-45307,0,214,AC025614.12/45521-45307
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,6976,AC027237.8,1,sp|AC027237.8|AC027237 Homo sapiens chromosome 15; clone RP11-253M7; complete sequence.,0,89,41712,41919,43.44,AAGAGUAUAAUUUCAGGCAUCAAUUCUGUAGUUCCUUACUAGAGAAGUUUCUCUUAACAUGUACAACACUGGAAACCAUGAGGAGGUGGCAGCACAGCAUUCUCUGCUGAGCGUGAGGUUGGCUCUUGGUGUUGCUUUGCUGCAACUGUCAUUUGCCAUUGAUGAUGGUUCUUCUCUUCCUCCGAGGGAGAGAAUGCAGUCUGAGUGG,AC027237.8/41712-41919,41712-41919,0,207,AC027237.8/41712-41919
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7029,AC027347.5,1,sp|AC027347.5|AC027347 Homo sapiens chromosome 5 clone CTD-2562I21; complete sequence.,1,90,7814,7602,60.52,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGCUCAUUACUAGAGAAGUUCCCCUGAACGUGUAGAACACUGGCAACCAUGAGGAGGACAUGCAGUGUUCUGUCCUGAGUGUGAAGCUGGGUCUUGGUGUUGCUUUGCUGCAAGUACCAUUUGCCACUGAUGAUUGUUUUUGUCUCCCUCUGGGACAGUAAGGGAAAGGACACAGUCUGAGUGA,AC008929.3/76720-76932 AC027347.5/7814-7602,7814-7602,0,212,AC027347.5/7814-7602
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,7195,AC036222.23,1,sp|AC036222.23|AC036222 Homo sapiens chromosome 17; clone RP11-433M22; complete sequence.,0,91,129635,129849,64.46,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUAGUUGCUAGAGAAGUUUCUCUGGACAUGUGGAGCACCAGAAACCAUGAGAAGGAGAUGUAGUGUUCUCUCCGGAGCAUGAAGCUGGCUCUUGGUGUUGCUUCGCUGCACCUGCCAUUUGCCAUUGACAAUCAUUCUUCUCUUCCUCUGGGAGAGUAAGGAGGAGAGGACACAGUCUGAGUGG,AC036222.23/129635-129849,129635-129849,0,214,AC036222.23/129635-129849
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9153,AC083849.6,1,sp|AC083849.6|AC083849 Homo sapiens BAC clone RP11-163I18 from 7; complete sequence.,0,92,28395,28609,42.08,CUAGUAACACUUCCAUGCACCAUUUCUAUAGUUUCUUACCAGAGAAGUUUCUCUGAACAUGUGGAGCACCGGAAACCACGAGGAGGCGGCUCAGCAUUCACUCCUGAGCAUGAAGCUGGCUCUUGGUGGUGCUUCUCUGCAAUUGCCUUUUGCUGCUGAUGAUCACUCUUCUCUUCCUUUGGGAGAGUGAAAGGGAAAGGAAGCCAUCUGAAGGG,AC083849.6/28395-28609 AC005378.2/79834-79620,28395-28609,0,214,AC083849.6/28395-28609
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz,9819,AC090515.2,1,sp|AC090515.2|AC090515 Homo sapiens chromosome 15 clone RP11-30K9 map 15q21.3; complete sequence.,1,93,52813,52599,75.30,AAGACUAUACUUUCAGGGAUCAUUUGUAUAGUUCGUUACUAGAGAAUUUUCUCUGAAUGUGUAGAACACCAGAAACCACAAGGAGGAGGCGCAGCGUUCUCUCCUGAGCGUGAAGCCGGGUCCUGGUGUUGCUUCACUGCAACUGCCAUUUGCCAUUGAUGAUUGUUCUUCUCUUCCUUUGGGAGAGUAAGAGGCAAAGGAUGCAGUCUGAAUGG,AC090515.2/52813-52599,52813-52599,0,214,AC090515.2/52813-52599
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,399,AC092040.2,1,sp|AC092040.2|AC092040 Homo sapiens chromosome 3 clone RP11-129B22; complete sequence.,0,94,151625,151836,42.82,AAGAUUAUACUUUCAGGAAUCAUUUCUAUAGUUUGUUACUAGAGAAAGUUCUCUGAAUGUGUAAAGCAUGAAAAACCACAAGGAGACACAGUGUCUGCUCCUGACUGAAAAGCCAGCUCUUGGUGUUGCUCUGCUGCAACUGCUAUUUGCCAUUGAUAACCAUUCUUCUCUUCCUCUGGGAUAGUAAGAGGGAGAGACUGCAGUCUGAGUGG,AC092040.2/151625-151836,151625-151836,0,211,AC092040.2/151625-151836
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,865,AC092805.2,1,sp|AC092805.2|AC092805 Homo sapiens chromosome 1 clone RP11-99A8; complete sequence.,0,95,19984,20197,74.64,AAGACUAUAUUUUCAGGGAUCAUUUCUACAGUGCACUACUAGAGAAGUUUCUGUGAACUUGUAGAGCACCGGAAACCAUGAGCAGGAAGUGCAGCGUUCUCUCCUGAGCAUGAAGCCGGCUCUUGGUGUGGCUUCGCUGCAACUGCCAUUGGCCAUUGAUGAUCGUUCUUCUCUUCUCUGGGAGAGUAAGAGAGAGAGGACACAGUCUGAGUGG,AC124917.4/109955-110168 AC092805.2/19984-20197,19984-20197,0,213,AC092805.2/19984-20197
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5707,AC124917.4,1,sp|AC124917.4|AC124917 Homo sapiens chromosome 1 clone RP5-910L7; complete sequence.,0,96,109955,110168,74.64,AAGACUAUAUUUUCAGGGAUCAUUUCUACAGUGCACUACUAGAGAAGUUUCUGUGAACUUGUAGAGCACCGGAAACCAUGAGCAGGAAGUGCAGCGUUCUCUCCUGAGCAUGAAGCCGGCUCUUGGUGUGGCUUCGCUGCAACUGCCAUUGGCCAUUGAUGAUCGUUCUUCUCUUCUCUGGGAGAGUAAGAGAGAGAGGACACAGUCUGAGUGG,AC124917.4/109955-110168 AC092805.2/19984-20197,109955-110168,0,213,AC124917.4/109955-110168
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,5924,AC127487.5,1,sp|AC127487.5|AC127487 Homo sapiens chromosome 8; clone RP11-729C3; complete sequence.,1,97,48044,47833,44.51,AAUGCUAUACUUUCAUGGGUCAUUUCUAUAGUUUGUUAUUAGAGAAGUUUCUCUGAAUGUGUUGAGCACCAGAAACCACGAGGAGAUGCAGCAUUCUCUCCUGAACGGGAAGCCAGCUUUUGGCAUUGCUUUGAUGCAACUACCAUUUGCCAUUGAUGGCAAUGCAUCGCUUCCUCUAGGAGUGUAAGAGGGAGUGGAUGCAGUCAGAGUGG,AC022616.9/186616-186827 AC127487.5/48044-47833,48044-47833,0,211,AC127487.5/48044-47833
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6845,AC139138.2,1,sp|AC139138.2|AC139138 Homo sapiens chromosome 17; clone XXfos-82524G9; complete sequence.,0,98,40602,40817,100.46,AAGACUAUACUUUCAGGGAUCAGUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUUUGGCGUUGCUUCGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AC139138.2/40602-40817 AC140106.1/19802-19587 AF020535.1/361-576 AF020534.1/361-576,40602-40817,0,215,AC139138.2/40602-40817
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,6937,AC140106.1,1,sp|AC140106.1|AC140106 Homo sapiens chromosome 17; clone XXfos-801239H9; complete sequence.,1,99,19802,19587,100.46,AAGACUAUACUUUCAGGGAUCAGUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUUUGGCGUUGCUUCGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AC139138.2/40602-40817 AC140106.1/19802-19587 AF020535.1/361-576 AF020534.1/361-576,19802-19587,0,215,AC140106.1/19802-19587
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,8836,AF020531.1,1,sp|AF020531.1|AF020531 Homo sapiens U3 small nuclear RNA (U3a) gene; promoter region and complete sequence.,0,100,104,319,97.62,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAAGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGUAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCCCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AF020531.1/104-319,104-319,0,215,AF020531.1/104-319
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,8839,AF020534.1,1,sp|AF020534.1|AF020534 Homo sapiens U3 small nuclear RNA (U3b1) gene; promoter region and complete sequence.,0,101,361,576,100.46,AAGACUAUACUUUCAGGGAUCAGUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUUUGGCGUUGCUUCGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AC139138.2/40602-40817 AC140106.1/19802-19587 AF020535.1/361-576 AF020534.1/361-576,361-576,0,215,AF020534.1/361-576
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz,8840,AF020535.1,1,sp|AF020535.1|AF020535 Homo sapiens U3 small nuclear RNA (U3b2) gene; promoter region and complete sequence.,0,102,361,576,100.46,AAGACUAUACUUUCAGGGAUCAGUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUUUGGCGUUGCUUCGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AC139138.2/40602-40817 AC140106.1/19802-19587 AF020535.1/361-576 AF020534.1/361-576,361-576,0,215,AF020535.1/361-576
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,616,AL157895.8,1,sp|AL157895.8|AL157895 Human DNA sequence from clone RP11-354E11 on chromosome 10,0,103,28499,28714,51.05,AAGACUGUGCUUUCAGGGAUCAUGUCUAUAGUUUGCCACUAGAGAAGUUUUUUUGAACAUGUAGUAGGGCACCAGAAGCACAAGGAAGAGGCACAGCCUUCUCUCCUGAGCAUGAAUCUGGCUCUUGGUCUUGCUUUGUUCCAGCUACCAUUUGCCAUUGAUUAUGUCCUUCUCUUCCUUCCAGAAAGUAAAAGGGAGAGAAUGCAGUCUGAGUGG,AL157895.8/28499-28714,28499-28714,0,215,AL157895.8/28499-28714
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,5393,AL627390.7,1,sp|AL627390.7|AL627390 Human DNA sequence from clone RP13-278H16 on chromosome X,1,104,149172,148958,65.29,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUUGUUACUAGAGAAGUUUCUCUGAACGUGUAUAGCACUGAAAACCACAAAGAAGAGGUGCAGCAUUAUCUCCUAAGUGUAAAGCCGGCUCUUGAUGUUGCUUUGCUGCAACUGCCAUUUGCCAUUGAUGAUCGUUCUUUUCUUCCUUUGGGAGACUGGGAAGGAAAGGAUGCAAUCUGAGUGG,AL627390.7/149172-148958,149172-148958,0,214,AL627390.7/149172-148958
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,7515,AP003113.1,1,sp|AP003113.1|AP003113 Homo sapiens genomic DNA; chromosome 8q23; clone:KB1747F8.,0,105,93246,93456,59.43,AAGACUAUACUCUCAGGAAUCAUUUCUAUAGUUUUUUACUAGAGAAAUUUCUCUGAACGUGUAGAGCACUGGAAACCGUGAGGAGAAGCUGCCUUCUCUUCUGAGCAUGAAGUGAGCUCUCAGUGUUGCUUCUCUGCAACUGCCAUUUGCCAUUGAUGAUCGUUCUUCUCUUCCUCUGGGAGAGUAAAAGGGUACAGGAUGCAGUCUGAGU,AP003113.1/93246-93456 AP003116.2/13755-13965,93246-93456,0,210,AP003113.1/93246-93456
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,7518,AP003116.2,1,sp|AP003116.2|AP003116 Homo sapiens genomic DNA; chromosome 8q23; clone: KB1241F12.,0,106,13755,13965,59.43,AAGACUAUACUCUCAGGAAUCAUUUCUAUAGUUUUUUACUAGAGAAAUUUCUCUGAACGUGUAGAGCACUGGAAACCGUGAGGAGAAGCUGCCUUCUCUUCUGAGCAUGAAGUGAGCUCUCAGUGUUGCUUCUCUGCAACUGCCAUUUGCCAUUGAUGAUCGUUCUUCUCUUCCUCUGGGAGAGUAAAAGGGUACAGGAUGCAGUCUGAGU,AP003113.1/93246-93456 AP003116.2/13755-13965,13755-13965,0,210,AP003116.2/13755-13965
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,7819,AP005327.2,1,sp|AP005327.2|AP005327 Homo sapiens genomic DNA; chromosome 18 clone:RP11-231N16; complete sequence.,1,107,127562,127348,63.66,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCAUUACUAGAGAAGUUUCUCUGAAUGGGUAGAGCACUGGAAACCAUGAGGAGGAGGCACAGUGUUCUCUCCUGAGCAUGAAGCUGACUCUUGGUGUUGCUUCACUGCACCUGCCAUGUGCCACUGAUGAUUGUUCUUGUCUUCCUCUGGGAGAGUAAGACGGAGAGCAUGCAGUCUGAGUGC,AP005327.2/127562-127348 AP005900.1/88759-88973,127562-127348,0,214,AP005327.2/127562-127348
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz,7892,AP005900.1,1,sp|AP005900.1|AP005900 Homo sapiens genomic DNA; chromosome 18p clone:RP11-931H21; complete sequence.,0,108,88759,88973,63.66,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCAUUACUAGAGAAGUUUCUCUGAAUGGGUAGAGCACUGGAAACCAUGAGGAGGAGGCACAGUGUUCUCUCCUGAGCAUGAAGCUGACUCUUGGUGUUGCUUCACUGCACCUGCCAUGUGCCACUGAUGAUUGUUCUUGUCUUCCUCUGGGAGAGUAAGACGGAGAGCAUGCAGUCUGAGUGC,AP005327.2/127562-127348 AP005900.1/88759-88973,88759-88973,0,214,AP005900.1/88759-88973
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz,3301,AL121839.3,1,sp|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-747H7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human),0,109,140802,141016,47.42,AAAAUUAUACUUUCAGCAAUCAUCUCUAUAGUUUGUUACUAGAGAAGCUUCUGUGAAUGUGUAGAGCACCGGAAACCACAAGGCAAAGGCUCAGCAUUCUCUCCUAAGCGCGAAGCUGGCUCCUGGUGUUGGUUGGCCGCAACUGCCAUUUGCCAUUGAUGAUCAUUCUUCUCUUCCUGUGGUAGAGGAAGAGGGAGAGAAUGCAGUUUGAGUGG,AL121839.3/140802-141016,140802-141016,0,214,AL121839.3/140802-141016
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz,3407,AL136038.5,1,sp|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2302E22 of library CalTech-D from chromosome 14 of Homo sapiens (Human),0,110,13275,13477,38.61,AAGACCAUAUUUUCAGGGAUCAUUUCUAUAGUUCAUUCAUUACUAGAGAAGUUUCUCUGAACAUGCAGGGCACCGCAAACCAUGAGGAAGAGGCACAGCAUUCUCUUCUGAGCCUGAAGCCAGCUCUUCUUGCUUCACUGCCAUUUGCCCUUCAUGAUCAUUCUCUUCCUGCAGGAGAGUAAGAAAGGAUGCAGUCUGAGUGG,AL161670.4/161539-161741 AL136038.5/13275-13477,13275-13477,0,202,AL136038.5/13275-13477
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz,3513,AL161670.4,1,sp|AL161670.4|CNS01RHD Human chromosome 14 DNA sequence BAC R-804M7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human),0,111,161539,161741,38.61,AAGACCAUAUUUUCAGGGAUCAUUUCUAUAGUUCAUUCAUUACUAGAGAAGUUUCUCUGAACAUGCAGGGCACCGCAAACCAUGAGGAAGAGGCACAGCAUUCUCUUCUGAGCCUGAAGCCAGCUCUUCUUGCUUCACUGCCAUUUGCCCUUCAUGAUCAUUCUCUUCCUGCAGGAGAGUAAGAAAGGAUGCAGUCUGAGUGG,AL161670.4/161539-161741 AL136038.5/13275-13477,161539-161741,0,202,AL161670.4/161539-161741
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz,3593,AL355836.3,1,sp|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8L8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human),0,112,118882,119096,71.91,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUUCAUUACUAGAGAAGUUUCUCUGAAUGUGUAGAGCACCAGAAACUAUGAGGAGGAGGCACAGAGUUCUCUCCUGAGCAUGAAGCUGGCACUUGGUGUUGCUUUGCUGCAGCUGCCACUUACCAUUGGUGAUUGUUCUUGUCUUCCUCUUGGAGAGUAAGAGAAAGAGAAUGCAGUCUGAGAGG,AL355836.3/118882-119096,118882-119096,0,214,AL355836.3/118882-119096
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz,6701,Z64431.1,1,sp|Z64431.1|HS119C3F H.sapiens CpG island DNA genomic Mse1 fragment; clone 119c3; forward read cpg119c3.ft1a .,0,113,3,190,41.75,AGUACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAAAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUGUGGCGUNGCUUGNNUGNAACUGCCGACAGCCAUUGAUGAUCGUUCUUCUCUCCGAAUUGGGGAG,Z64431.1/3-190,3-190,0,187,Z64431.1/3-190
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz,7380,Z56604.1,1,sp|Z56604.1|HS12E2R H.sapiens CpG island DNA genomic Mse1 fragment; clone 12e2; reverse read cpg12e2.rt1c .,0,114,2,218,92.17,AAGACUAUACUUUCAGGGCAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGUACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUNGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,Z56604.1/2-218,2-218,0,216,Z56604.1/2-218
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz,7627,Z56643.1,1,sp|Z56643.1|HS133B12F H.sapiens CpG island DNA genomic Mse1 fragment; clone 133b12; forward read cpg133b12.ft1a .,0,115,2,217,101.26,AAGACUAUACUNUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,Z56643.1/2-217,2-217,0,215,Z56643.1/2-217
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz,499,BX295541.1,1,sp|BX295541.1|HS172N19 Homo sapiens chromosome X PAC RP1-172N19 map Xq13 markers PHKA1-DXS227,1,116,105234,105020,57.35,AGGGCUAUACUUUCAGGGGUAAUUUCUAUAGUUCAUUACUAGAGUAGUUUCUCUGAAUGUGUAGGGUGCCAGAAACCACAAGGAGGAGGCACAGCAUUCUCUAGUGAGUGUGAAGCCGGCUGUUGGUGUUGCUUCGCUGAAACUGCCAUUUGCCACUGAUAAUCGUUCUUCUUUUCCAUCAGGAGACUAAGAGGUAGAAAACGCAGUCUGAGUGG,BX295541.1/105234-105020,105234-105020,0,214,BX295541.1/105234-105020
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz,3453,Z57913.1,1,sp|Z57913.1|HS21A8F H.sapiens CpG island DNA genomic Mse1 fragment; clone 21a8; forward read cpg21a8.ft1a .,0,117,2,219,93.12,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGCAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGNGUUGCUUGGNUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCNNAUUGGGGAGUGAGAGGGAGAGAAACGCGGUCUGAGUGG,Z57913.1/2-219,2-219,0,217,Z57913.1/2-219
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz,4823,Z60518.1,1,sp|Z60518.1|HS26F4F H.sapiens CpG island DNA genomic Mse1 fragment; clone 26f4; forward read cpg26f4.ft1b .,0,118,2,218,88.70,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUGCUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGNAAAAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUGUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,Z60518.1/2-218,2-218,0,216,Z60518.1/2-218
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz,1564,Z55710.1,1,sp|Z55710.1|HS59F6F H.sapiens CpG island DNA genomic Mse1 fragment; clone 59f6; forward read cpg59f6.ft1a .,0,119,2,215,94.46,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUUUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGU,Z55710.1/2-215,2-215,0,213,Z55710.1/2-215
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz,4179,Z63262.1,1,sp|Z63262.1|HS7H5R H.sapiens CpG island DNA genomic Mse1 fragment; clone 7h5; reverse read cpg7h5.rt1d .,0,120,1,214,82.37,AGAUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUAUCUGAACGUGUAGAGCACCGAAAACCCCGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGNUUUCUGGCGUUGCUUGGCUGNAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGNGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,Z63262.1/1-214,1-214,0,213,Z63262.1/1-214
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz,5534,Z66380.1,1,sp|Z66380.1|HS92A7R H.sapiens CpG island DNA genomic Mse1 fragment; clone 92a7; reverse read cpg92a7.rt1a .,0,121,1,215,91.91,AGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCCCGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUNGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,Z66380.1/1-215,1-215,0,214,Z66380.1/1-215
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz,5488,AJ009617.5,1,sp|AJ009617.5|HSAJ9617 Homo sapiens chromosome 17 sequence from PAC RP1-149D14 and cosmid 40M01,0,122,7742,7957,99.36,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCCCGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AC007952.15/44375-44160 AJ009617.5/7742-7957 AC007952.15/42151-42366,7742-7957 9966-9751,0,215,AJ009617.5/7742-7957
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz,5488,AJ009617.5,1,sp|AJ009617.5|HSAJ9617 Homo sapiens chromosome 17 sequence from PAC RP1-149D14 and cosmid 40M01,1,123,9966,9751,100.48,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGCAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,AJ009617.5/9966-9751,7742-7957 9966-9751,0,215,AJ009617.5/9966-9751
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz,2846,AL121944.14,1,sp|AL121944.14|HSDJ313I6 Human DNA sequence from clone RP1-313I6 on chromosome 6. Contains a KIAA0036 pseudogene; olfactory receptor 2W2; 2B7; 2B8 and 1F12 pseudogenes (OR2W2P; OR2B7P; OR2B8 and OR1F12); the ZNF165 gene for zinc finger protein 165; two zinc finger protein pseudogenes; ESTs; STSs; GSSs and two CpG islands.,0,124,34347,34554,47.79,AAGACUAUACUUUCAGGGAUCAUUUCUACAUUUCCGGGUAAUUUCUUUGAACAUGUGGAGCACCGGAAACCACCAGGAGGAGGCACAGCAUUUUCUCUGGAGCGUGAAGCCAGUUCUUGGUGUUGCUGCAUAGCAACUGCCAUUUGCCUUUGAUGAUCAUUCUUCUUUUCCUUUAGGAGAAUAAGAGGGGGAGAACCCAGUCUGAGGG,AL121944.14/34347-34554,34347-34554,0,207,AL121944.14/34347-34554
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz,3918,AL117334.29,1,sp|AL117334.29|HSJ687F11 Human DNA sequence from clone RP4-687F11 on chromosome 20 Contains the 5' end of the L3MBTL gene for l(3)mbt-like (Drosophila)(DKFZP434N061); a pseudogene similar to MMS2 and chicken CROC-1B and a putative CpG island.,0,125,54607,54817,38.64,AAGACUAUACUUUCAGGGAUCAUUUCUGUAGUUCAUUAUUAGAGAGGUCUCUCUGAAUGAGUAGAGCACUAGAAACCACAGAAGGAGGCACAGUGGUCUCUCCUGAGCAUAAAGCUGGUUUUUGAUGUUGCUUUGCUGCAACUGCCAUUCGUCACUGAUGACUGUUUUCUUCCUCUGGGAGAGUAAGAGGGAGAGGACACUAUCUGAGUGU,AL117334.29/54607-54817,54607-54817,0,210,AL117334.29/54607-54817
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz,7234,X14945.1,1,sp|X14945.1|HSU3 Human gene for U3 small nuclear RNA,0,126,538,753,102.14,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,M14061.1/277-492 X14945.1/538-753,538-753,0,215,X14945.1/538-753
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz,7538,X14946.1,1,sp|X14946.1|HSU3P Human pseudogene for U3 small nuclear RNA,0,127,230,446,74.95,AAGACUAUACUUUCAGGGAUCAUUUGUAUAGUUCGUUACUAGAGAAGUUUCUCUGAAUGUGUAGAACACCAGAAACCACAAGGAGGAGGCGCAGCGUUCUCUCCUGAGCGUGAAGCCGGCUUUCUAGGCGUUGCUCAACUGCAACUGCAGUUUGCCAUUGAUGAUUGUUCUUCUCUUCGUUUGGGAGAGUAAGAGGCAAAGGAUGCAGUCUGAAUGG,X14946.1/230-446,230-446,0,216,X14946.1/230-446
./cmzasha --no-stderr --filter 350 37 Rfam/cm/RF00012.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00012_greedy_forwardinf_cfsqp_cycling_Ecoli_0MM.bin ,Rfam/cm/RF00012.cm (global),/projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz,1196,M14061.1,1,sp|M14061.1|HSUG3PE Human U3 small nuclear RNA gene.,0,128,277,492,102.14,AAGACUAUACUUUCAGGGAUCAUUUCUAUAGUGUGUUACUAGAGAAGUUUCUCUGAACGUGUAGAGCACCGAAAACCACGAGGAAGAGAGGUAGCGUUUUCUCCUGAGCGUGAAGCCGGCUUUCUGGCGUUGCUUGGCUGCAACUGCCGUCAGCCAUUGAUGAUCGUUCUUCUCUCCGUAUUGGGGAGUGAGAGGGAGAGAACGCGGUCUGAGUGG,M14061.1/277-492 X14945.1/538-753,277-492,0,215,M14061.1/277-492



THINGS IN Rfam THAT WEREN'T FOUND:


# hits found that weren't in Rfam: 0 (totally new = 0, overlaps hit in Rfam = 0, overlap hits with more than 10 nucs = 0,  total # hits with 0 overlap with Rfam (ignoring sequence matching) = 0)
# Rfam hits not found: 0 (no overlap of >= 10 nucs: 0)
# Rfam seqs not found: 0 (no overlap of >= 10 nucs: too tricky to calculate)