params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,2402,AB035862.1,1,sp|AB035862.1|AB035862 Rhizoctonia solani plasmid pRS224 pRS-RT gene for reverse transcriptase; complete cds.,1,0,908,862,35.64,ACUCGUCUGGGCUUGGGCUCACUGAUGAGGCUUCGGCCGAAACGAGU,****    NEW  HIT  #0  ****,,2,0,AB035862.1/908-862
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,101930,AL161577.2,1,sp|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4; contig fragment No. 73,1,1,178624,178566,26.84,AACUGGUCGUGAUCUGAAACCCGAUCACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC,****    NEW  HIT  #1  ****,,2,0,AL161577.2/178624-178566
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,101930,AL161577.2,1,sp|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4; contig fragment No. 73,1,2,173611,173553,25.57,AACUGGUCGUGAUCUGAAACUCGAUCACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC,****    NEW  HIT  #2  ****,,2,0,AL161577.2/173611-173553
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,102300,AL022198.1,1,sp|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4; BAC clone F6I18 (ESSA project),0,3,89209,89267,26.84,AACUGGUCGUGAUCUGAAACCCGAUCACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AL022198.1/89209-89267
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,102300,AL022198.1,1,sp|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4; BAC clone F6I18 (ESSA project),0,4,94222,94280,25.57,AACUGGUCGUGAUCUGAAACUCGAUCACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC,****    NEW  HIT (duplicate of new hit #2)   ****,,2,0,AL022198.1/94222-94280
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119282,AL109787.1,1,sp|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4; BAC clone T10C21,1,5,77509,77451,26.84,AACUGGUCGUGAUCUGAAACCCGAUCACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AL109787.1/77509-77451
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,119282,AL109787.1,1,sp|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4; BAC clone T10C21,1,6,72496,72438,25.57,AACUGGUCGUGAUCUGAAACUCGAUCACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC,****    NEW  HIT (duplicate of new hit #2)   ****,,2,0,AL109787.1/72496-72438
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40211,AF170496.1,1,sp|AF170496.1|AF170496 Peach latent mosaic viroid variant #24 from Prunus persica Siberian C cultivar; complete sequence.,0,7,284,335,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,56-3 284-335,0,51,AF170496.1/284-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40211,AF170496.1,1,sp|AF170496.1|AF170496 Peach latent mosaic viroid variant #24 from Prunus persica Siberian C cultivar; complete sequence.,1,8,56,3,68.20,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AF170497.1/56-3 AJ241839.1/56-3 AJ005309.1/56-3 AF170496.1/56-3 AJ005308.1/56-3 AJ005311.1/56-3 AJ005307.1/56-3 AJ005306.1/56-3 AF170515.1/56-3 AF170502.1/56-3 AF170501.1/56-3 AF170500.1/56-3 AF170499.1/56-3 AJ241845.1/56-3,56-3 284-335,0,53,AF170496.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40212,AF170497.1,1,sp|AF170497.1|AF170497 Peach latent mosaic viroid variant #29 from Prunus persica Siberian C cultivar; complete sequence.,0,9,284,335,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,56-3 284-335,0,51,AF170497.1/284-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40212,AF170497.1,1,sp|AF170497.1|AF170497 Peach latent mosaic viroid variant #29 from Prunus persica Siberian C cultivar; complete sequence.,1,10,56,3,68.20,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AF170497.1/56-3 AJ241839.1/56-3 AJ005309.1/56-3 AF170496.1/56-3 AJ005308.1/56-3 AJ005311.1/56-3 AJ005307.1/56-3 AJ005306.1/56-3 AF170515.1/56-3 AF170502.1/56-3 AF170501.1/56-3 AF170500.1/56-3 AF170499.1/56-3 AJ241845.1/56-3,56-3 284-335,0,53,AF170497.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40213,AF170498.1,1,sp|AF170498.1|AF170498 Peach latent mosaic viroid variant #21 from Prunus persica Siberian C cultivar; complete sequence.,0,11,283,336,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,283-336 56-3,0,53,AF170498.1/283-336
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40213,AF170498.1,1,sp|AF170498.1|AF170498 Peach latent mosaic viroid variant #21 from Prunus persica Siberian C cultivar; complete sequence.,1,12,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,283-336 56-3,0,53,AF170498.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40214,AF170499.1,1,sp|AF170499.1|AF170499 Peach latent mosaic viroid variant #22 from Prunus persica Siberian C cultivar; complete sequence.,0,13,285,336,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,285-336 56-3,0,51,AF170499.1/285-336
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40214,AF170499.1,1,sp|AF170499.1|AF170499 Peach latent mosaic viroid variant #22 from Prunus persica Siberian C cultivar; complete sequence.,1,14,56,3,68.20,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AF170497.1/56-3 AJ241839.1/56-3 AJ005309.1/56-3 AF170496.1/56-3 AJ005308.1/56-3 AJ005311.1/56-3 AJ005307.1/56-3 AJ005306.1/56-3 AF170515.1/56-3 AF170502.1/56-3 AF170501.1/56-3 AF170500.1/56-3 AF170499.1/56-3 AJ241845.1/56-3,285-336 56-3,0,53,AF170499.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40215,AF170500.1,1,sp|AF170500.1|AF170500 Peach latent mosaic viroid variant #1 from Prunus persica Hardired cultivar; complete sequence.,0,15,284,335,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,56-3 284-335,0,51,AF170500.1/284-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40215,AF170500.1,1,sp|AF170500.1|AF170500 Peach latent mosaic viroid variant #1 from Prunus persica Hardired cultivar; complete sequence.,1,16,56,3,68.20,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AF170497.1/56-3 AJ241839.1/56-3 AJ005309.1/56-3 AF170496.1/56-3 AJ005308.1/56-3 AJ005311.1/56-3 AJ005307.1/56-3 AJ005306.1/56-3 AF170515.1/56-3 AF170502.1/56-3 AF170501.1/56-3 AF170500.1/56-3 AF170499.1/56-3 AJ241845.1/56-3,56-3 284-335,0,53,AF170500.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40216,AF170501.1,1,sp|AF170501.1|AF170501 Peach latent mosaic viroid variant #6 from Prunus persica Hardired cultivar; complete sequence.,0,17,283,334,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,56-3 283-334,0,51,AF170501.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40216,AF170501.1,1,sp|AF170501.1|AF170501 Peach latent mosaic viroid variant #6 from Prunus persica Hardired cultivar; complete sequence.,1,18,56,3,68.20,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AF170497.1/56-3 AJ241839.1/56-3 AJ005309.1/56-3 AF170496.1/56-3 AJ005308.1/56-3 AJ005311.1/56-3 AJ005307.1/56-3 AJ005306.1/56-3 AF170515.1/56-3 AF170502.1/56-3 AF170501.1/56-3 AF170500.1/56-3 AF170499.1/56-3 AJ241845.1/56-3,56-3 283-334,0,53,AF170501.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40217,AF170502.1,1,sp|AF170502.1|AF170502 Peach latent mosaic viroid variant #7 from Prunus persica Hardired cultivar; complete sequence.,0,19,284,335,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,284-335 56-3,0,51,AF170502.1/284-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40217,AF170502.1,1,sp|AF170502.1|AF170502 Peach latent mosaic viroid variant #7 from Prunus persica Hardired cultivar; complete sequence.,1,20,56,3,68.20,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AF170497.1/56-3 AJ241839.1/56-3 AJ005309.1/56-3 AF170496.1/56-3 AJ005308.1/56-3 AJ005311.1/56-3 AJ005307.1/56-3 AJ005306.1/56-3 AF170515.1/56-3 AF170502.1/56-3 AF170501.1/56-3 AF170500.1/56-3 AF170499.1/56-3 AJ241845.1/56-3,284-335 56-3,0,53,AF170502.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40218,AF170503.1,1,sp|AF170503.1|AF170503 Peach latent mosaic viroid variant #8 from Prunus persica Hardired cultivar; complete sequence.,0,21,281,332,63.61,AAAGGUCUGUGCUUAGCACACUGACGAGUUCCUGAAAUGGAACGAAACCUUU,AF170503.1/281-332,55-3 281-332,0,51,AF170503.1/281-332
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40218,AF170503.1,1,sp|AF170503.1|AF170503 Peach latent mosaic viroid variant #8 from Prunus persica Hardired cultivar; complete sequence.,1,22,55,3,58.68,CAUAAGUCUGGGCUUAGCCACUGACGAGUCGCUGGGAUACGGCGAAACUUAUG,AF170503.1/55-3,55-3 281-332,0,52,AF170503.1/55-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40219,AF170504.1,1,sp|AF170504.1|AF170504 Peach latent mosaic viroid variant #11 from Prunus persica Redhaven cultivar; complete sequence.,0,23,284,337,68.37,GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC,AF170504.1/284-337,284-337 56-3,0,53,AF170504.1/284-337
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40219,AF170504.1,1,sp|AF170504.1|AF170504 Peach latent mosaic viroid variant #11 from Prunus persica Redhaven cultivar; complete sequence.,1,24,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,284-337 56-3,0,53,AF170504.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40220,AF170505.1,1,sp|AF170505.1|AF170505 Peach latent mosaic viroid variant #12 from Prunus persica Redhaven cultivar; complete sequence.,0,25,285,336,68.80,AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AF170506.1/285-336 AF170509.1/284-335 AF170505.1/285-336 AF170507.1/285-336 AF170519.1/282-333,56-3 285-336,0,51,AF170505.1/285-336
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40220,AF170505.1,1,sp|AF170505.1|AF170505 Peach latent mosaic viroid variant #12 from Prunus persica Redhaven cultivar; complete sequence.,1,26,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 285-336,0,53,AF170505.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40221,AF170506.1,1,sp|AF170506.1|AF170506 Peach latent mosaic viroid variant #13 from Prunus persica Redhaven cultivar; complete sequence.,0,27,285,336,68.80,AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AF170506.1/285-336 AF170509.1/284-335 AF170505.1/285-336 AF170507.1/285-336 AF170519.1/282-333,56-3 285-336,0,51,AF170506.1/285-336
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40221,AF170506.1,1,sp|AF170506.1|AF170506 Peach latent mosaic viroid variant #13 from Prunus persica Redhaven cultivar; complete sequence.,1,28,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 285-336,0,53,AF170506.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40222,AF170507.1,1,sp|AF170507.1|AF170507 Peach latent mosaic viroid variant #15 from Prunus persica Redhaven cultivar; complete sequence.,0,29,285,336,68.80,AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AF170506.1/285-336 AF170509.1/284-335 AF170505.1/285-336 AF170507.1/285-336 AF170519.1/282-333,56-3 285-336,0,51,AF170507.1/285-336
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40222,AF170507.1,1,sp|AF170507.1|AF170507 Peach latent mosaic viroid variant #15 from Prunus persica Redhaven cultivar; complete sequence.,1,30,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 285-336,0,53,AF170507.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40223,AF170508.1,1,sp|AF170508.1|AF170508 Peach latent mosaic viroid variant #2 from Prunus persica Harrow Beauty cultivar; complete sequence.,0,31,283,336,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,283-336 56-3,0,53,AF170508.1/283-336
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40223,AF170508.1,1,sp|AF170508.1|AF170508 Peach latent mosaic viroid variant #2 from Prunus persica Harrow Beauty cultivar; complete sequence.,1,32,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,283-336 56-3,0,53,AF170508.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40224,AF170509.1,1,sp|AF170509.1|AF170509 Peach latent mosaic viroid variant #3 from Prunus persica Harrow Beauty cultivar; complete sequence.,0,33,284,335,68.80,AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AF170506.1/285-336 AF170509.1/284-335 AF170505.1/285-336 AF170507.1/285-336 AF170519.1/282-333,284-335 56-3,0,51,AF170509.1/284-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40224,AF170509.1,1,sp|AF170509.1|AF170509 Peach latent mosaic viroid variant #3 from Prunus persica Harrow Beauty cultivar; complete sequence.,1,34,56,3,63.02,CAUAAGUCUAGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170509.1/56-3,284-335 56-3,0,53,AF170509.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40225,AF170510.1,1,sp|AF170510.1|AF170510 Peach latent mosaic viroid variant #4 from Prunus persica Harrow Beauty cultivar; complete sequence.,0,35,286,339,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,56-3 286-339,0,53,AF170510.1/286-339
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40225,AF170510.1,1,sp|AF170510.1|AF170510 Peach latent mosaic viroid variant #4 from Prunus persica Harrow Beauty cultivar; complete sequence.,1,36,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 286-339,0,53,AF170510.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40226,AF170511.1,1,sp|AF170511.1|AF170511 Peach latent mosaic viroid variant #5 from Prunus persica Harrow Beauty cultivar; complete sequence.,0,37,283,336,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,56-3 283-336,0,53,AF170511.1/283-336
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40226,AF170511.1,1,sp|AF170511.1|AF170511 Peach latent mosaic viroid variant #5 from Prunus persica Harrow Beauty cultivar; complete sequence.,1,38,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 283-336,0,53,AF170511.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40227,AF170512.1,1,sp|AF170512.1|AF170512 Peach latent mosaic viroid variant #11 from Prunus persica Redgold cultivar; complete sequence.,0,39,284,335,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,284-335 56-3,0,51,AF170512.1/284-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40227,AF170512.1,1,sp|AF170512.1|AF170512 Peach latent mosaic viroid variant #11 from Prunus persica Redgold cultivar; complete sequence.,1,40,56,3,66.49,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AJ241827.1/56-3 AJ005319.1/56-3 AJ241847.1/56-3 AF170514.1/56-3 AJ005321.1/56-3 AJ005317.1/56-3 AJ241850.1/56-3 AJ241846.1/56-3 AJ005320.1/56-3 AJ005316.1/56-3 AF170512.1/56-3,284-335 56-3,0,53,AF170512.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40228,AF170513.1,1,sp|AF170513.1|AF170513 Peach latent mosaic viroid variant #15 from Prunus persica Redgold cultivar; complete sequence.,0,41,283,336,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,56-3 283-336,0,53,AF170513.1/283-336
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40228,AF170513.1,1,sp|AF170513.1|AF170513 Peach latent mosaic viroid variant #15 from Prunus persica Redgold cultivar; complete sequence.,1,42,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 283-336,0,53,AF170513.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40229,AF170514.1,1,sp|AF170514.1|AF170514 Peach latent mosaic viroid variant #16 from Prunus persica Redgold cultivar; complete sequence.,0,43,284,335,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,284-335 56-3,0,51,AF170514.1/284-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40229,AF170514.1,1,sp|AF170514.1|AF170514 Peach latent mosaic viroid variant #16 from Prunus persica Redgold cultivar; complete sequence.,1,44,56,3,66.49,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AJ241827.1/56-3 AJ005319.1/56-3 AJ241847.1/56-3 AF170514.1/56-3 AJ005321.1/56-3 AJ005317.1/56-3 AJ241850.1/56-3 AJ241846.1/56-3 AJ005320.1/56-3 AJ005316.1/56-3 AF170512.1/56-3,284-335 56-3,0,53,AF170514.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40230,AF170515.1,1,sp|AF170515.1|AF170515 Peach latent mosaic viroid variant #20 from Prunus persica Redgold cultivar; complete sequence.,0,45,284,335,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,56-3 284-335,0,51,AF170515.1/284-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40230,AF170515.1,1,sp|AF170515.1|AF170515 Peach latent mosaic viroid variant #20 from Prunus persica Redgold cultivar; complete sequence.,1,46,56,3,68.20,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AF170497.1/56-3 AJ241839.1/56-3 AJ005309.1/56-3 AF170496.1/56-3 AJ005308.1/56-3 AJ005311.1/56-3 AJ005307.1/56-3 AJ005306.1/56-3 AF170515.1/56-3 AF170502.1/56-3 AF170501.1/56-3 AF170500.1/56-3 AF170499.1/56-3 AJ241845.1/56-3,56-3 284-335,0,53,AF170515.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40231,AF170516.1,1,sp|AF170516.1|AF170516 Peach latent mosaic viroid variant #5 from Prunus persica Agua cultivar; complete sequence.,0,47,283,335,62.40,GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170516.1/283-335,56-3 283-335,0,52,AF170516.1/283-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40231,AF170516.1,1,sp|AF170516.1|AF170516 Peach latent mosaic viroid variant #5 from Prunus persica Agua cultivar; complete sequence.,1,48,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 283-335,0,53,AF170516.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40232,AF170517.1,1,sp|AF170517.1|AF170517 Peach latent mosaic viroid variant #11 from Prunus persica Agua cultivar; complete sequence.,0,49,284,334,61.94,AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ550903.1/282-332 AF170517.1/284-334 AJ550905.1/282-332 AJ005304.1/282-332 AJ550902.1/282-332 AJ005313.1/283-333 AJ550904.1/282-332,284-334 56-3,0,50,AF170517.1/284-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40232,AF170517.1,1,sp|AF170517.1|AF170517 Peach latent mosaic viroid variant #11 from Prunus persica Agua cultivar; complete sequence.,1,50,56,3,63.12,CAUAAGUCUGGGCUUAGACCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170517.1/56-3,284-334 56-3,0,53,AF170517.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40233,AF170518.1,1,sp|AF170518.1|AF170518 Peach latent mosaic viroid variant #2 from Prunus persica Suncrest cultivar; complete sequence.,0,51,281,334,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,55-3 281-334,0,53,AF170518.1/281-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40233,AF170518.1,1,sp|AF170518.1|AF170518 Peach latent mosaic viroid variant #2 from Prunus persica Suncrest cultivar; complete sequence.,1,52,55,3,60.13,CAUAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170519.1/55-3 AF170518.1/55-3,55-3 281-334,0,52,AF170518.1/55-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40234,AF170519.1,1,sp|AF170519.1|AF170519 Peach latent mosaic viroid variant #1 from Prunus persica Golden Health cultivar; complete sequence.,0,53,282,333,68.80,AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AF170506.1/285-336 AF170509.1/284-335 AF170505.1/285-336 AF170507.1/285-336 AF170519.1/282-333,55-3 282-333,0,51,AF170519.1/282-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40234,AF170519.1,1,sp|AF170519.1|AF170519 Peach latent mosaic viroid variant #1 from Prunus persica Golden Health cultivar; complete sequence.,1,54,55,3,60.13,CAUAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170519.1/55-3 AF170518.1/55-3,55-3 282-333,0,52,AF170519.1/55-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40235,AF170520.1,1,sp|AF170520.1|AF170520 Peach latent mosaic viroid variant #1 from Prunus persica Tylor cultivar; complete sequence.,0,55,282,335,69.62,GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC,AF170521.1/282-335 AF170523.1/282-335 AF170520.1/282-335 AF170522.1/282-335,55-3 282-335,0,53,AF170520.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40235,AF170520.1,1,sp|AF170520.1|AF170520 Peach latent mosaic viroid variant #1 from Prunus persica Tylor cultivar; complete sequence.,1,56,55,3,60.11,CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AF170523.1/55-3 AF170522.1/55-3 AF170521.1/55-3 AF170520.1/55-3,55-3 282-335,0,52,AF170520.1/55-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40236,AF170521.1,1,sp|AF170521.1|AF170521 Peach latent mosaic viroid variant #2 from Prunus persica Tylor cultivar; complete sequence.,0,57,282,335,69.62,GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC,AF170521.1/282-335 AF170523.1/282-335 AF170520.1/282-335 AF170522.1/282-335,282-335 55-3,0,53,AF170521.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40236,AF170521.1,1,sp|AF170521.1|AF170521 Peach latent mosaic viroid variant #2 from Prunus persica Tylor cultivar; complete sequence.,1,58,55,3,60.11,CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AF170523.1/55-3 AF170522.1/55-3 AF170521.1/55-3 AF170520.1/55-3,282-335 55-3,0,52,AF170521.1/55-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40237,AF170522.1,1,sp|AF170522.1|AF170522 Peach latent mosaic viroid variant #3 from Prunus persica Tylor cultivar; complete sequence.,0,59,282,335,69.62,GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC,AF170521.1/282-335 AF170523.1/282-335 AF170520.1/282-335 AF170522.1/282-335,55-3 282-335,0,53,AF170522.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40237,AF170522.1,1,sp|AF170522.1|AF170522 Peach latent mosaic viroid variant #3 from Prunus persica Tylor cultivar; complete sequence.,1,60,55,3,60.11,CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AF170523.1/55-3 AF170522.1/55-3 AF170521.1/55-3 AF170520.1/55-3,55-3 282-335,0,52,AF170522.1/55-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40238,AF170523.1,1,sp|AF170523.1|AF170523 Peach latent mosaic viroid variant #4 from Prunus persica Tylor cultivar; complete sequence.,0,61,282,335,69.62,GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC,AF170521.1/282-335 AF170523.1/282-335 AF170520.1/282-335 AF170522.1/282-335,55-3 282-335,0,53,AF170523.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,40238,AF170523.1,1,sp|AF170523.1|AF170523 Peach latent mosaic viroid variant #4 from Prunus persica Tylor cultivar; complete sequence.,1,62,55,3,60.11,CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AF170523.1/55-3 AF170522.1/55-3 AF170521.1/55-3 AF170520.1/55-3,55-3 282-335,0,52,AF170523.1/55-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,64798,AF339739.1,1,sp|AF339739.1|AF339739 Peach latent mosaic viroid peach isolate; complete genome.,0,63,281,334,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,56-3 281-334,0,53,AF339739.1/281-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,64798,AF339739.1,1,sp|AF339739.1|AF339739 Peach latent mosaic viroid peach isolate; complete genome.,1,64,56,3,64.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG,AF339739.1/56-3,56-3 281-334,0,53,AF339739.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,64799,AF339740.1,1,sp|AF339740.1|AF339740 Peach latent mosaic viroid wild pear isolate; complete genome.,0,65,282,335,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,282-335 56-3,0,53,AF339740.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,64799,AF339740.1,1,sp|AF339740.1|AF339740 Peach latent mosaic viroid wild pear isolate; complete genome.,1,66,56,3,62.39,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG,AF339740.1/56-3,282-335 56-3,0,53,AF339740.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,64800,AF339741.1,1,sp|AF339741.1|AF339741 Peach latent mosaic viroid cherry isolate; complete genome.,0,67,281,334,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,56-3 281-334,0,53,AF339741.1/281-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,64800,AF339741.1,1,sp|AF339741.1|AF339741 Peach latent mosaic viroid cherry isolate; complete genome.,1,68,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 281-334,0,53,AF339741.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,64801,AF339742.1,1,sp|AF339742.1|AF339742 Peach latent mosaic viroid plum isolate; complete genome.,0,69,282,335,69.26,GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC,AF170508.1/283-336 AF170510.1/286-339 AF339739.1/281-334 AF339741.1/281-334 AF339740.1/282-335 AF170518.1/281-334 AF339742.1/282-335 AF170498.1/283-336 AF170511.1/283-336 AF170513.1/283-336,56-3 282-335,0,53,AF339742.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,64801,AF339742.1,1,sp|AF339742.1|AF339742 Peach latent mosaic viroid plum isolate; complete genome.,1,70,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 282-335,0,53,AF339742.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,136599,M63666.1,1,sp|M63666.1|BYDSATRN Cereal yellow dwarf virus-RPA satellite RNA.,1,71,246,192,46.75,CCGGUGUCUCAAGGUGCGUACCUUGACUGAUGAGUCCGAAAGGACGAAACACCAG,M63666.1/246-192,246-192,0,54,M63666.1/246-192
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137422,AJ247112.1,1,sp|AJ247112.1|CCH247112 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 1,1,72,133,53,43.90,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247115.1/133-53 AJ247121.1/133-53 AJ247114.1/133-53 AJ247120.1/133-53 AJ247112.1/133-53 AJ247119.1/131-51 AJ247118.1/133-53 AJ247117.1/133-53,133-53,0,80,AJ247112.1/133-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137423,AJ247113.1,1,sp|AJ247113.1|CCH247113 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 2,1,73,134,53,43.82,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUUGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247113.1/134-53,134-53,0,81,AJ247113.1/134-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137424,AJ247114.1,1,sp|AJ247114.1|CCH247114 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 3,1,74,133,53,43.90,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247115.1/133-53 AJ247121.1/133-53 AJ247114.1/133-53 AJ247120.1/133-53 AJ247112.1/133-53 AJ247119.1/131-51 AJ247118.1/133-53 AJ247117.1/133-53,133-53,0,80,AJ247114.1/133-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137425,AJ247115.1,1,sp|AJ247115.1|CCH247115 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 4,1,75,133,53,43.90,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247115.1/133-53 AJ247121.1/133-53 AJ247114.1/133-53 AJ247120.1/133-53 AJ247112.1/133-53 AJ247119.1/131-51 AJ247118.1/133-53 AJ247117.1/133-53,133-53,0,80,AJ247115.1/133-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137426,AJ247116.1,1,sp|AJ247116.1|CCH247116 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 6,1,76,133,53,41.99,UCCAGUCGAGACCUGAAGUGGGUUUACUGAUGAGGCUGUGGAGAGAGCGAAAGCUUUACUCCCACACAAGCCGAAACUGGA,AJ247116.1/133-53,133-53,0,80,AJ247116.1/133-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137427,AJ247117.1,1,sp|AJ247117.1|CCH247117 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 7,1,77,133,53,43.90,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247115.1/133-53 AJ247121.1/133-53 AJ247114.1/133-53 AJ247120.1/133-53 AJ247112.1/133-53 AJ247119.1/131-51 AJ247118.1/133-53 AJ247117.1/133-53,133-53,0,80,AJ247117.1/133-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137428,AJ247118.1,1,sp|AJ247118.1|CCH247118 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 25,1,78,133,53,43.90,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247115.1/133-53 AJ247121.1/133-53 AJ247114.1/133-53 AJ247120.1/133-53 AJ247112.1/133-53 AJ247119.1/131-51 AJ247118.1/133-53 AJ247117.1/133-53,133-53,0,80,AJ247118.1/133-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137429,AJ247119.1,1,sp|AJ247119.1|CCH247119 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 26,1,79,131,51,43.90,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247115.1/133-53 AJ247121.1/133-53 AJ247114.1/133-53 AJ247120.1/133-53 AJ247112.1/133-53 AJ247119.1/131-51 AJ247118.1/133-53 AJ247117.1/133-53,131-51,0,80,AJ247119.1/131-51
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137430,AJ247120.1,1,sp|AJ247120.1|CCH247120 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 30,1,80,133,53,43.90,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247115.1/133-53 AJ247121.1/133-53 AJ247114.1/133-53 AJ247120.1/133-53 AJ247112.1/133-53 AJ247119.1/131-51 AJ247118.1/133-53 AJ247117.1/133-53,133-53,0,80,AJ247120.1/133-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137431,AJ247121.1,1,sp|AJ247121.1|CCH247121 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 35,1,81,133,53,43.90,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247115.1/133-53 AJ247121.1/133-53 AJ247114.1/133-53 AJ247120.1/133-53 AJ247112.1/133-53 AJ247119.1/131-51 AJ247118.1/133-53 AJ247117.1/133-53,133-53,0,80,AJ247121.1/133-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137432,AJ247122.1,1,sp|AJ247122.1|CCH247122 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 38,1,82,132,52,43.90,UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUAUUGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247122.1/132-52,132-52,0,80,AJ247122.1/132-52
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137433,AJ247123.1,1,sp|AJ247123.1|CCH247123 Chrysanthemum chlorotic mottle viroid RNA; variant CMNS 41,1,83,132,52,44.24,UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAGCUUUACUCCCGCACAAGCCGAAACUGGA,AJ247123.1/132-52,132-52,0,80,AJ247123.1/132-52
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,137438,Y14700.1,1,sp|Y14700.1|CCMVCM5 Chrysanthemum chlorotic mottle viroid,1,84,133,53,44.24,UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAGCUUUACUCCCACACAAGCCGAAACUGGA,Y14700.1/133-53,133-53,0,80,Y14700.1/133-53
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,138243,Y12833.1,1,sp|Y12833.1|CSCVLRNA Cherry small circular viroid-like RNA; satellite RNA,1,85,338,286,38.62,CGCUAUAUGGGGAUGUGUGUCCCUACUGACGAGUUCAAAAGAACGAAAUAGUU,Y12833.1/338-286,338-286,0,52,Y12833.1/338-286
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140420,AJ536612.1,1,sp|AJ536612.1|ELA536612 Eggplant latent viroid complete genome; isolate 1,1,86,205,153,38.33,CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGGGCGAAACGGUA,AJ536616.1/205-153 AJ536612.1/205-153 AJ536617.1/205-153,205-153,0,52,AJ536612.1/205-153
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140421,AJ536613.1,1,sp|AJ536613.1|ELA536613 Eggplant latent viroid complete genome; isolate 2,1,87,205,151,41.67,CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGAAAGGACGAAACGGUAC,AJ536613.1/205-151 AJ536619.1/206-152 AJ536618.1/204-150,205-151,0,54,AJ536613.1/205-151
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140422,AJ536614.1,1,sp|AJ536614.1|ELA536614 Eggplant latent viroid complete genome; isolate 3,1,88,205,153,37.31,CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAAAAGGGCGAAACGGUA,AJ536614.1/205-153,205-153,0,52,AJ536614.1/205-153
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140423,AJ536615.1,1,sp|AJ536615.1|ELA536615 Eggplant latent viroid complete genome; isolate 4,1,89,205,153,32.72,CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGAGCGAAACGGUA,AJ536615.1/205-153,205-153,0,52,AJ536615.1/205-153
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140424,AJ536616.1,1,sp|AJ536616.1|ELA536616 Eggplant latent viroid complete genome; isolate 5,1,90,205,153,38.33,CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGGGCGAAACGGUA,AJ536616.1/205-153 AJ536612.1/205-153 AJ536617.1/205-153,205-153,0,52,AJ536616.1/205-153
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140425,AJ536617.1,1,sp|AJ536617.1|ELA536617 Eggplant latent viroid complete genome; isolate 6,1,91,205,153,38.33,CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGGGCGAAACGGUA,AJ536616.1/205-153 AJ536612.1/205-153 AJ536617.1/205-153,205-153,0,52,AJ536617.1/205-153
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140426,AJ536618.1,1,sp|AJ536618.1|ELA536618 Eggplant latent viroid complete genome; isolate 7,1,92,204,150,41.67,CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGAAAGGACGAAACGGUAC,AJ536613.1/205-151 AJ536619.1/206-152 AJ536618.1/204-150,204-150,0,54,AJ536618.1/204-150
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140427,AJ536619.1,1,sp|AJ536619.1|ELA536619 Eggplant latent viroid complete genome; isolate 8,1,93,206,152,41.67,CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGAAAGGACGAAACGGUAC,AJ536613.1/205-151 AJ536619.1/206-152 AJ536618.1/204-150,206-152,0,54,AJ536619.1/206-152
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,140428,AJ536620.1,1,sp|AJ536620.1|ELA536620 Eggplant latent viroid complete genome; isolate 9,1,94,206,152,38.98,CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAAAAGGGCGAAACGGUAC,AJ536620.1/206-152,206-152,0,54,AJ536620.1/206-152
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,180957,X01984.1,1,sp|X01984.1|LTSVARN2 Lucerne transient streak virus satellite RNA (LTSV-A) RNA 2 sequence,1,95,170,107,34.71,CAGACGUAUGAGACUGACUGAAACGCCGUCUCACUGAUGAGGCCAUGGCAGGCCGAAACGUCCG,****    NEW  HIT  #7  ****,,2,0,X01984.1/170-107
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,180958,X01985.1,1,sp|X01985.1|LTSVNRN2 Lucerne transient streak virus (LTSV-N) RNA2 sequence,1,96,169,107,35.03,CAGACGUAUGAGACUGACUGAUAGCCGUCUCACUGAUGAGGCCAUGGCAGGCCGAAACGUCCG,****    NEW  HIT  #8  ****,,2,0,X01985.1/169-107
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,181766,D00341.1,1,sp|D00341.1|MTSCA Lucerne transient streak virus (LTSV-C) satellite RNA; complete sequence.,0,97,160,218,25.12,CAUACGUCUGAGCGUGAUACUCGCUCACUGAAGAUGGCCUAGUAAGGCCGAAACGUAGU,****    NEW  HIT  #9  ****,,2,0,D00341.1/160-218
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,181766,D00341.1,1,sp|D00341.1|MTSCA Lucerne transient streak virus (LTSV-C) satellite RNA; complete sequence.,1,98,168,107,31.09,AGACGUAUGAGAGACUGACUGAAACCGUCUCACUGAUGAGGCCAUGGUAGGCCGAAACGUCC,****    NEW  HIT  #10  ****,,2,0,D00341.1/168-107
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,182993,J02386.1,1,sp|J02386.1|NOR2 Solanum nodiflorum mottle virus satellite RNA.,0,99,43,94,41.95,GUCCGUAGUGGAUGUGUAUCCACUCUGAUGAGUCCAAAAGGACGAAACGGAU,J02386.1/43-94,43-94,0,51,J02386.1/43-94
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184662,AJ241818.1,1,sp|AJ241818.1|PLA241818 peach latent mosaic viroid; varient gds6-1b,0,100,282,335,69.27,AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ005303.1/281-334 AJ241818.1/282-335 AJ241820.1/282-335 AJ005296.1/282-335 AJ241842.1/282-335 AJ241827.1/282-335 AJ241844.1/282-335 AJ241849.1/282-335 AJ241819.1/282-335 AJ241821.1/282-335 AJ005297.1/282-335,282-335 56-3,0,53,AJ241818.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184662,AJ241818.1,1,sp|AJ241818.1|PLA241818 peach latent mosaic viroid; varient gds6-1b,1,101,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,282-335 56-3,0,53,AJ241818.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184663,AJ241819.1,1,sp|AJ241819.1|PLA241819 peach latent mosaic viroid; varient gds6-1,0,102,282,335,69.27,AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ005303.1/281-334 AJ241818.1/282-335 AJ241820.1/282-335 AJ005296.1/282-335 AJ241842.1/282-335 AJ241827.1/282-335 AJ241844.1/282-335 AJ241849.1/282-335 AJ241819.1/282-335 AJ241821.1/282-335 AJ005297.1/282-335,56-3 282-335,0,53,AJ241819.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184663,AJ241819.1,1,sp|AJ241819.1|PLA241819 peach latent mosaic viroid; varient gds6-1,1,103,56,3,65.14,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG,AJ241819.1/56-3,56-3 282-335,0,53,AJ241819.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184664,AJ241820.1,1,sp|AJ241820.1|PLA241820 peach latent mosaic viroid; varient gds6-3,0,104,282,335,69.27,AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ005303.1/281-334 AJ241818.1/282-335 AJ241820.1/282-335 AJ005296.1/282-335 AJ241842.1/282-335 AJ241827.1/282-335 AJ241844.1/282-335 AJ241849.1/282-335 AJ241819.1/282-335 AJ241821.1/282-335 AJ005297.1/282-335,282-335 56-3,0,53,AJ241820.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184664,AJ241820.1,1,sp|AJ241820.1|PLA241820 peach latent mosaic viroid; varient gds6-3,1,105,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,282-335 56-3,0,53,AJ241820.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184665,AJ241821.1,1,sp|AJ241821.1|PLA241821 peach latent mosaic viroid; varient gds6-7,0,106,282,335,69.27,AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ005303.1/281-334 AJ241818.1/282-335 AJ241820.1/282-335 AJ005296.1/282-335 AJ241842.1/282-335 AJ241827.1/282-335 AJ241844.1/282-335 AJ241849.1/282-335 AJ241819.1/282-335 AJ241821.1/282-335 AJ005297.1/282-335,56-3 282-335,0,53,AJ241821.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184665,AJ241821.1,1,sp|AJ241821.1|PLA241821 peach latent mosaic viroid; varient gds6-7,1,107,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,56-3 282-335,0,53,AJ241821.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184666,AJ241822.1,1,sp|AJ241822.1|PLA241822 peach latent mosaic viroid; varient gds6-8,0,108,283,333,60.68,AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241832.1/283-333 AJ005318.1/281-331 AJ241822.1/283-333 AJ005295.1/283-333 AJ241833.1/283-333 AJ005319.1/281-331 AJ005294.1/283-333 AJ005320.1/282-332,283-333 56-3,0,50,AJ241822.1/283-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184666,AJ241822.1,1,sp|AJ241822.1|PLA241822 peach latent mosaic viroid; varient gds6-8,1,109,56,3,64.18,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ005301.1/56-3 AJ005300.1/56-3 AJ005299.1/56-3 AJ241837.1/56-3 AJ005298.1/56-3 AJ241836.1/56-3 AJ241823.1/56-3 AJ005297.1/56-3 AJ241835.1/56-3 AJ241822.1/56-3 AJ005296.1/56-3 AJ241834.1/56-3 AJ241833.1/56-3 AJ005294.1/56-3 AJ241832.1/56-3,283-333 56-3,0,53,AJ241822.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184667,AJ241823.1,1,sp|AJ241823.1|PLA241823 peach latent mosaic viroid; varient gds6-11,0,110,283,334,62.88,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUAAAAUGAGACGAAACUCUU,AJ241823.1/283-334,56-3 283-334,0,51,AJ241823.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184667,AJ241823.1,1,sp|AJ241823.1|PLA241823 peach latent mosaic viroid; varient gds6-11,1,111,56,3,64.18,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ005301.1/56-3 AJ005300.1/56-3 AJ005299.1/56-3 AJ241837.1/56-3 AJ005298.1/56-3 AJ241836.1/56-3 AJ241823.1/56-3 AJ005297.1/56-3 AJ241835.1/56-3 AJ241822.1/56-3 AJ005296.1/56-3 AJ241834.1/56-3 AJ241833.1/56-3 AJ005294.1/56-3 AJ241832.1/56-3,56-3 283-334,0,53,AJ241823.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184668,AJ241824.1,1,sp|AJ241824.1|PLA241824 peach latent mosaic viroid; varient gds6-12,0,112,283,334,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,56-3 283-334,0,51,AJ241824.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184668,AJ241824.1,1,sp|AJ241824.1|PLA241824 peach latent mosaic viroid; varient gds6-12,1,113,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,56-3 283-334,0,53,AJ241824.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184669,AJ241825.1,1,sp|AJ241825.1|PLA241825 peach latent mosaic viroid; varient gds6-22,0,114,283,334,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,283-334 56-3,0,51,AJ241825.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184669,AJ241825.1,1,sp|AJ241825.1|PLA241825 peach latent mosaic viroid; varient gds6-22,1,115,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,283-334 56-3,0,53,AJ241825.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184670,AJ241826.1,1,sp|AJ241826.1|PLA241826 peach latent mosaic viroid; varient gds15-1s,0,116,283,334,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,56-3 283-334,0,51,AJ241826.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184670,AJ241826.1,1,sp|AJ241826.1|PLA241826 peach latent mosaic viroid; varient gds15-1s,1,117,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,56-3 283-334,0,53,AJ241826.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184671,AJ241827.1,1,sp|AJ241827.1|PLA241827 peach latent mosaic viroid; varient gds15-2s,0,118,282,335,69.27,AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ005303.1/281-334 AJ241818.1/282-335 AJ241820.1/282-335 AJ005296.1/282-335 AJ241842.1/282-335 AJ241827.1/282-335 AJ241844.1/282-335 AJ241849.1/282-335 AJ241819.1/282-335 AJ241821.1/282-335 AJ005297.1/282-335,56-3 282-335,0,53,AJ241827.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184671,AJ241827.1,1,sp|AJ241827.1|PLA241827 peach latent mosaic viroid; varient gds15-2s,1,119,56,3,66.49,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AJ241827.1/56-3 AJ005319.1/56-3 AJ241847.1/56-3 AF170514.1/56-3 AJ005321.1/56-3 AJ005317.1/56-3 AJ241850.1/56-3 AJ241846.1/56-3 AJ005320.1/56-3 AJ005316.1/56-3 AF170512.1/56-3,56-3 282-335,0,53,AJ241827.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184672,AJ241828.1,1,sp|AJ241828.1|PLA241828 peach latent mosaic viroid; varient gds15-4s,0,120,282,334,61.83,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAAUGAGACGAAACUCUU,AJ241828.1/282-334 AJ005317.1/282-334,282-334 56-3,0,52,AJ241828.1/282-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184672,AJ241828.1,1,sp|AJ241828.1|PLA241828 peach latent mosaic viroid; varient gds15-4s,1,121,56,3,61.62,CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AJ241828.1/56-3,282-334 56-3,0,53,AJ241828.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184673,AJ241829.1,1,sp|AJ241829.1|PLA241829 peach latent mosaic viroid; varient gds15-5s,0,122,280,331,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,280-331 56-3,0,51,AJ241829.1/280-331
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184673,AJ241829.1,1,sp|AJ241829.1|PLA241829 peach latent mosaic viroid; varient gds15-5s,1,123,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,280-331 56-3,0,53,AJ241829.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184674,AJ241830.1,1,sp|AJ241830.1|PLA241830 peach latent mosaic viroid; varient gds15-6s,0,124,282,334,62.41,AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ241830.1/282-334,56-3 282-334,0,52,AJ241830.1/282-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184674,AJ241830.1,1,sp|AJ241830.1|PLA241830 peach latent mosaic viroid; varient gds15-6s,1,125,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,56-3 282-334,0,53,AJ241830.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184675,AJ241831.1,1,sp|AJ241831.1|PLA241831 peach latent mosaic viroid; varient gds15-4as,0,126,282,333,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,56-3 282-333,0,51,AJ241831.1/282-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184675,AJ241831.1,1,sp|AJ241831.1|PLA241831 peach latent mosaic viroid; varient gds15-4as,1,127,56,3,63.07,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG,AJ241831.1/56-3,56-3 282-333,0,53,AJ241831.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184676,AJ241832.1,1,sp|AJ241832.1|PLA241832 peach latent mosaic viroid; varient gds15-6as,0,128,283,333,60.68,AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241832.1/283-333 AJ005318.1/281-331 AJ241822.1/283-333 AJ005295.1/283-333 AJ241833.1/283-333 AJ005319.1/281-331 AJ005294.1/283-333 AJ005320.1/282-332,283-333 56-3,0,50,AJ241832.1/283-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184676,AJ241832.1,1,sp|AJ241832.1|PLA241832 peach latent mosaic viroid; varient gds15-6as,1,129,56,3,64.18,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ005301.1/56-3 AJ005300.1/56-3 AJ005299.1/56-3 AJ241837.1/56-3 AJ005298.1/56-3 AJ241836.1/56-3 AJ241823.1/56-3 AJ005297.1/56-3 AJ241835.1/56-3 AJ241822.1/56-3 AJ005296.1/56-3 AJ241834.1/56-3 AJ241833.1/56-3 AJ005294.1/56-3 AJ241832.1/56-3,283-333 56-3,0,53,AJ241832.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184677,AJ241833.1,1,sp|AJ241833.1|PLA241833 peach latent mosaic viroid; varient gds15-7as,0,130,283,333,60.68,AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241832.1/283-333 AJ005318.1/281-331 AJ241822.1/283-333 AJ005295.1/283-333 AJ241833.1/283-333 AJ005319.1/281-331 AJ005294.1/283-333 AJ005320.1/282-332,283-333 56-3,0,50,AJ241833.1/283-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184677,AJ241833.1,1,sp|AJ241833.1|PLA241833 peach latent mosaic viroid; varient gds15-7as,1,131,56,3,64.18,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ005301.1/56-3 AJ005300.1/56-3 AJ005299.1/56-3 AJ241837.1/56-3 AJ005298.1/56-3 AJ241836.1/56-3 AJ241823.1/56-3 AJ005297.1/56-3 AJ241835.1/56-3 AJ241822.1/56-3 AJ005296.1/56-3 AJ241834.1/56-3 AJ241833.1/56-3 AJ005294.1/56-3 AJ241832.1/56-3,283-333 56-3,0,53,AJ241833.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184678,AJ241834.1,1,sp|AJ241834.1|PLA241834 peach latent mosaic viroid; varient gds15-10as,0,132,283,334,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,283-334 56-3,0,51,AJ241834.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184678,AJ241834.1,1,sp|AJ241834.1|PLA241834 peach latent mosaic viroid; varient gds15-10as,1,133,56,3,64.18,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ005301.1/56-3 AJ005300.1/56-3 AJ005299.1/56-3 AJ241837.1/56-3 AJ005298.1/56-3 AJ241836.1/56-3 AJ241823.1/56-3 AJ005297.1/56-3 AJ241835.1/56-3 AJ241822.1/56-3 AJ005296.1/56-3 AJ241834.1/56-3 AJ241833.1/56-3 AJ005294.1/56-3 AJ241832.1/56-3,283-334 56-3,0,53,AJ241834.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184679,AJ241835.1,1,sp|AJ241835.1|PLA241835 peach latent mosaic viroid; varient gds15-11as,0,134,282,333,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,282-333 56-3,0,51,AJ241835.1/282-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184679,AJ241835.1,1,sp|AJ241835.1|PLA241835 peach latent mosaic viroid; varient gds15-11as,1,135,56,3,64.18,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ005301.1/56-3 AJ005300.1/56-3 AJ005299.1/56-3 AJ241837.1/56-3 AJ005298.1/56-3 AJ241836.1/56-3 AJ241823.1/56-3 AJ005297.1/56-3 AJ241835.1/56-3 AJ241822.1/56-3 AJ005296.1/56-3 AJ241834.1/56-3 AJ241833.1/56-3 AJ005294.1/56-3 AJ241832.1/56-3,282-333 56-3,0,53,AJ241835.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184680,AJ241836.1,1,sp|AJ241836.1|PLA241836 peach latent mosaic viroid; varient gds15-12as,0,136,282,333,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,56-3 282-333,0,51,AJ241836.1/282-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184680,AJ241836.1,1,sp|AJ241836.1|PLA241836 peach latent mosaic viroid; varient gds15-12as,1,137,56,3,64.18,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ005301.1/56-3 AJ005300.1/56-3 AJ005299.1/56-3 AJ241837.1/56-3 AJ005298.1/56-3 AJ241836.1/56-3 AJ241823.1/56-3 AJ005297.1/56-3 AJ241835.1/56-3 AJ241822.1/56-3 AJ005296.1/56-3 AJ241834.1/56-3 AJ241833.1/56-3 AJ005294.1/56-3 AJ241832.1/56-3,56-3 282-333,0,53,AJ241836.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184681,AJ241837.1,1,sp|AJ241837.1|PLA241837 peach latent mosaic viroid; varient gds15-18as,0,138,283,334,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,283-334 56-3,0,51,AJ241837.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184681,AJ241837.1,1,sp|AJ241837.1|PLA241837 peach latent mosaic viroid; varient gds15-18as,1,139,56,3,64.18,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ005301.1/56-3 AJ005300.1/56-3 AJ005299.1/56-3 AJ241837.1/56-3 AJ005298.1/56-3 AJ241836.1/56-3 AJ241823.1/56-3 AJ005297.1/56-3 AJ241835.1/56-3 AJ241822.1/56-3 AJ005296.1/56-3 AJ241834.1/56-3 AJ241833.1/56-3 AJ005294.1/56-3 AJ241832.1/56-3,283-334 56-3,0,53,AJ241837.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184682,AJ241838.1,1,sp|AJ241838.1|PLA241838 peach latent mosaic viroid; varient esc10-1,0,140,283,334,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,56-3 283-334,0,51,AJ241838.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184682,AJ241838.1,1,sp|AJ241838.1|PLA241838 peach latent mosaic viroid; varient esc10-1,1,141,56,3,58.72,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG,AJ241838.1/56-3,56-3 283-334,0,53,AJ241838.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184683,AJ241839.1,1,sp|AJ241839.1|PLA241839 peach latent mosaic viroid; varient esc10-2,0,142,283,333,60.71,AUGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AJ241839.1/283-333,56-3 283-333,0,50,AJ241839.1/283-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184683,AJ241839.1,1,sp|AJ241839.1|PLA241839 peach latent mosaic viroid; varient esc10-2,1,143,56,3,68.20,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AF170497.1/56-3 AJ241839.1/56-3 AJ005309.1/56-3 AF170496.1/56-3 AJ005308.1/56-3 AJ005311.1/56-3 AJ005307.1/56-3 AJ005306.1/56-3 AF170515.1/56-3 AF170502.1/56-3 AF170501.1/56-3 AF170500.1/56-3 AF170499.1/56-3 AJ241845.1/56-3,56-3 283-333,0,53,AJ241839.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184684,AJ241840.1,1,sp|AJ241840.1|PLA241840 peach latent mosaic viroid; varient esc10-3,0,144,283,334,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,56-3 283-334,0,51,AJ241840.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184684,AJ241840.1,1,sp|AJ241840.1|PLA241840 peach latent mosaic viroid; varient esc10-3,1,145,56,3,67.00,CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AJ241840.1/56-3,56-3 283-334,0,53,AJ241840.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184685,AJ241841.1,1,sp|AJ241841.1|PLA241841 peach latent mosaic viroid; varient esc10-4,0,146,284,335,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,284-335 57-3,0,51,AJ241841.1/284-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184685,AJ241841.1,1,sp|AJ241841.1|PLA241841 peach latent mosaic viroid; varient esc10-4,1,147,57,3,61.15,CAAAAGUUUGGGCUAAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AJ241841.1/57-3,284-335 57-3,0,54,AJ241841.1/57-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184686,AJ241842.1,1,sp|AJ241842.1|PLA241842 peach latent mosaic viroid; varient esc10-5,0,148,282,335,69.27,AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ005303.1/281-334 AJ241818.1/282-335 AJ241820.1/282-335 AJ005296.1/282-335 AJ241842.1/282-335 AJ241827.1/282-335 AJ241844.1/282-335 AJ241849.1/282-335 AJ241819.1/282-335 AJ241821.1/282-335 AJ005297.1/282-335,56-3 282-335,0,53,AJ241842.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184686,AJ241842.1,1,sp|AJ241842.1|PLA241842 peach latent mosaic viroid; varient esc10-5,1,149,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,56-3 282-335,0,53,AJ241842.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184687,AJ241843.1,1,sp|AJ241843.1|PLA241843 peach latent mosaic viroid; varient esc10-6b,0,150,281,332,67.57,AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU,AF170502.1/284-335 AJ241841.1/284-335 AF170496.1/284-335 AJ005306.1/283-334 AJ241843.1/281-332 AJ005309.1/282-333 AJ005308.1/283-334 AJ005311.1/282-333 AF170499.1/285-336 AJ241838.1/283-334 AF170501.1/283-334 AF170497.1/284-335 AF170515.1/284-335 AF170500.1/284-335 AJ005307.1/283-334 AJ241840.1/283-334 AJ005310.1/282-333,56-3 281-332,0,51,AJ241843.1/281-332
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184687,AJ241843.1,1,sp|AJ241843.1|PLA241843 peach latent mosaic viroid; varient esc10-6b,1,151,56,3,64.23,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG,AJ241843.1/56-3,56-3 281-332,0,53,AJ241843.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184688,AJ241844.1,1,sp|AJ241844.1|PLA241844 peach latent mosaic viroid; varient esc10-12,0,152,282,335,69.27,AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ005303.1/281-334 AJ241818.1/282-335 AJ241820.1/282-335 AJ005296.1/282-335 AJ241842.1/282-335 AJ241827.1/282-335 AJ241844.1/282-335 AJ241849.1/282-335 AJ241819.1/282-335 AJ241821.1/282-335 AJ005297.1/282-335,56-3 282-335,0,53,AJ241844.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184688,AJ241844.1,1,sp|AJ241844.1|PLA241844 peach latent mosaic viroid; varient esc10-12,1,153,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,56-3 282-335,0,53,AJ241844.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184689,AJ241845.1,1,sp|AJ241845.1|PLA241845 peach latent mosaic viroid; varient esc10-13,0,154,282,335,69.25,GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG,AJ241845.1/282-335,282-335 56-3,0,53,AJ241845.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184689,AJ241845.1,1,sp|AJ241845.1|PLA241845 peach latent mosaic viroid; varient esc10-13,1,155,56,3,68.20,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG,AF170497.1/56-3 AJ241839.1/56-3 AJ005309.1/56-3 AF170496.1/56-3 AJ005308.1/56-3 AJ005311.1/56-3 AJ005307.1/56-3 AJ005306.1/56-3 AF170515.1/56-3 AF170502.1/56-3 AF170501.1/56-3 AF170500.1/56-3 AF170499.1/56-3 AJ241845.1/56-3,282-335 56-3,0,53,AJ241845.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184690,AJ241846.1,1,sp|AJ241846.1|PLA241846 peach latent mosaic viroid; varient ls11-2b,0,156,283,334,67.54,AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ241825.1/283-334 AF170512.1/284-335 AJ550912.1/283-334 AJ241837.1/283-334 AJ005298.1/283-334 AF170514.1/284-335 AJ005301.1/283-334 AJ241835.1/282-333 AJ241834.1/283-334 AJ241824.1/283-334 AJ241829.1/280-331 AJ241846.1/283-334 AJ241826.1/283-334 AJ005316.1/282-333 AJ241831.1/282-333 AJ241836.1/282-333,283-334 56-3,0,51,AJ241846.1/283-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184690,AJ241846.1,1,sp|AJ241846.1|PLA241846 peach latent mosaic viroid; varient ls11-2b,1,157,56,3,66.49,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AJ241827.1/56-3 AJ005319.1/56-3 AJ241847.1/56-3 AF170514.1/56-3 AJ005321.1/56-3 AJ005317.1/56-3 AJ241850.1/56-3 AJ241846.1/56-3 AJ005320.1/56-3 AJ005316.1/56-3 AF170512.1/56-3,283-334 56-3,0,53,AJ241846.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184691,AJ241847.1,1,sp|AJ241847.1|PLA241847 peach latent mosaic viroid; varient ls11-3,0,158,281,334,64.75,GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG,AJ241847.1/281-334,56-3 281-334,0,53,AJ241847.1/281-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184691,AJ241847.1,1,sp|AJ241847.1|PLA241847 peach latent mosaic viroid; varient ls11-3,1,159,56,3,66.49,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AJ241827.1/56-3 AJ005319.1/56-3 AJ241847.1/56-3 AF170514.1/56-3 AJ005321.1/56-3 AJ005317.1/56-3 AJ241850.1/56-3 AJ241846.1/56-3 AJ005320.1/56-3 AJ005316.1/56-3 AF170512.1/56-3,56-3 281-334,0,53,AJ241847.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184692,AJ241848.1,1,sp|AJ241848.1|PLA241848 peach latent mosaic viroid; varient ls11-4,0,160,281,334,69.22,GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ241848.1/281-334,281-334 56-3,0,53,AJ241848.1/281-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184692,AJ241848.1,1,sp|AJ241848.1|PLA241848 peach latent mosaic viroid; varient ls11-4,1,161,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,281-334 56-3,0,53,AJ241848.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184693,AJ241849.1,1,sp|AJ241849.1|PLA241849 peach latent mosaic viroid; varient ls11-6,0,162,282,335,69.27,AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG,AJ005303.1/281-334 AJ241818.1/282-335 AJ241820.1/282-335 AJ005296.1/282-335 AJ241842.1/282-335 AJ241827.1/282-335 AJ241844.1/282-335 AJ241849.1/282-335 AJ241819.1/282-335 AJ241821.1/282-335 AJ005297.1/282-335,56-3 282-335,0,53,AJ241849.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184693,AJ241849.1,1,sp|AJ241849.1|PLA241849 peach latent mosaic viroid; varient ls11-6,1,163,56,3,66.47,CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG,AJ241844.1/56-3 AJ241830.1/56-3 AJ241826.1/56-3 AJ241842.1/56-3 AJ241825.1/56-3 AJ241824.1/56-3 AF170504.1/56-3 AJ241849.1/56-3 AJ241848.1/56-3 AJ241818.1/56-3 AJ241821.1/56-3 AJ005295.1/56-3 AJ241829.1/56-3 AJ241820.1/56-3 AJ005303.1/56-3 AJ005302.1/56-3,56-3 282-335,0,53,AJ241849.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184694,AJ241850.1,1,sp|AJ241850.1|PLA241850 peach latent mosaic viroid; varient ls11-12,0,164,283,333,60.50,AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAAGAGACGAAACUCUU,AJ241850.1/283-333,56-3 283-333,0,50,AJ241850.1/283-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184694,AJ241850.1,1,sp|AJ241850.1|PLA241850 peach latent mosaic viroid; varient ls11-12,1,165,56,3,66.49,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AJ241827.1/56-3 AJ005319.1/56-3 AJ241847.1/56-3 AF170514.1/56-3 AJ005321.1/56-3 AJ005317.1/56-3 AJ241850.1/56-3 AJ241846.1/56-3 AJ005320.1/56-3 AJ005316.1/56-3 AF170512.1/56-3,56-3 283-333,0,53,AJ241850.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184696,AJ550545.1,1,sp|AJ550545.1|PLA550545 Peach latent mosaic viroid complete genome; isolate PC-C31,0,166,282,335,61.67,GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC,AJ550545.1/282-335 AJ550900.1/282-335 AJ550899.1/282-335,282-335 56-3,0,53,AJ550545.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184696,AJ550545.1,1,sp|AJ550545.1|PLA550545 Peach latent mosaic viroid complete genome; isolate PC-C31,1,167,56,3,61.21,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG,AJ550900.1/56-3 AJ550545.1/56-3 AJ550898.1/56-3,282-335 56-3,0,53,AJ550545.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184697,AJ550898.1,1,sp|AJ550898.1|PLA550898 Peach latent mosaic viroid complete genome; isolate PC-C39,0,168,282,335,62.63,GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUC,AJ550898.1/282-335,56-3 282-335,0,53,AJ550898.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184697,AJ550898.1,1,sp|AJ550898.1|PLA550898 Peach latent mosaic viroid complete genome; isolate PC-C39,1,169,56,3,61.21,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG,AJ550900.1/56-3 AJ550545.1/56-3 AJ550898.1/56-3,56-3 282-335,0,53,AJ550898.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184698,AJ550899.1,1,sp|AJ550899.1|PLA550899 Peach latent mosaic viroid complete genome; isolate PC-C41,0,170,282,335,61.67,GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC,AJ550545.1/282-335 AJ550900.1/282-335 AJ550899.1/282-335,282-335 56-3,0,53,AJ550899.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184698,AJ550899.1,1,sp|AJ550899.1|PLA550899 Peach latent mosaic viroid complete genome; isolate PC-C41,1,171,56,3,62.48,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG,AJ550901.1/56-3 AJ550899.1/56-3,282-335 56-3,0,53,AJ550899.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184699,AJ550900.1,1,sp|AJ550900.1|PLA550900 Peach latent mosaic viroid complete genome; isolate PC-C34,0,172,282,335,61.67,GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC,AJ550545.1/282-335 AJ550900.1/282-335 AJ550899.1/282-335,282-335 56-3,0,53,AJ550900.1/282-335
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184699,AJ550900.1,1,sp|AJ550900.1|PLA550900 Peach latent mosaic viroid complete genome; isolate PC-C34,1,173,56,3,61.21,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG,AJ550900.1/56-3 AJ550545.1/56-3 AJ550898.1/56-3,282-335 56-3,0,53,AJ550900.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184700,AJ550901.1,1,sp|AJ550901.1|PLA550901 Peach latent mosaic viroid complete genome; isolate PC-C38,0,174,282,334,54.81,GAAGAGUCGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC,AJ550901.1/282-334,56-3 282-334,0,52,AJ550901.1/282-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184700,AJ550901.1,1,sp|AJ550901.1|PLA550901 Peach latent mosaic viroid complete genome; isolate PC-C38,1,175,56,3,62.48,CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG,AJ550901.1/56-3 AJ550899.1/56-3,56-3 282-334,0,53,AJ550901.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184701,AJ550902.1,1,sp|AJ550902.1|PLA550902 Peach latent mosaic viroid complete genome; isolate PC-C33,0,176,282,332,61.94,AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ550903.1/282-332 AF170517.1/284-334 AJ550905.1/282-332 AJ005304.1/282-332 AJ550902.1/282-332 AJ005313.1/283-333 AJ550904.1/282-332,56-3 282-332,0,50,AJ550902.1/282-332
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184701,AJ550902.1,1,sp|AJ550902.1|PLA550902 Peach latent mosaic viroid complete genome; isolate PC-C33,1,177,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,56-3 282-332,0,53,AJ550902.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184702,AJ550903.1,1,sp|AJ550903.1|PLA550903 Peach latent mosaic viroid complete genome; isolate PC-C27,0,178,282,332,61.94,AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ550903.1/282-332 AF170517.1/284-334 AJ550905.1/282-332 AJ005304.1/282-332 AJ550902.1/282-332 AJ005313.1/283-333 AJ550904.1/282-332,282-332 56-3,0,50,AJ550903.1/282-332
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184702,AJ550903.1,1,sp|AJ550903.1|PLA550903 Peach latent mosaic viroid complete genome; isolate PC-C27,1,179,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,282-332 56-3,0,53,AJ550903.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184703,AJ550904.1,1,sp|AJ550904.1|PLA550904 Peach latent mosaic viroid complete genome; isolate PC-C29,0,180,282,332,61.94,AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ550903.1/282-332 AF170517.1/284-334 AJ550905.1/282-332 AJ005304.1/282-332 AJ550902.1/282-332 AJ005313.1/283-333 AJ550904.1/282-332,282-332 56-3,0,50,AJ550904.1/282-332
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184703,AJ550904.1,1,sp|AJ550904.1|PLA550904 Peach latent mosaic viroid complete genome; isolate PC-C29,1,181,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,282-332 56-3,0,53,AJ550904.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184704,AJ550905.1,1,sp|AJ550905.1|PLA550905 Peach latent mosaic viroid complete genome; isolate PC-C32,0,182,282,332,61.94,AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU,AJ550903.1/282-332 AF170517.1/284-334 AJ550905.1/282-332 AJ005304.1/282-332 AJ550902.1/282-332 AJ005313.1/283-333 AJ550904.1/282-332,282-332 56-3,0,50,AJ550905.1/282-332
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184704,AJ550905.1,1,sp|AJ550905.1|PLA550905 Peach latent mosaic viroid complete genome; isolate PC-C32,1,183,56,3,67.74,CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG,AF170511.1/56-3 AF170507.1/56-3 AJ550903.1/56-3 AF170510.1/56-3 AF170506.1/56-3 AJ005313.1/56-3 AJ550902.1/56-3 AF170505.1/56-3 AF339742.1/56-3 AF339741.1/56-3 AF170516.1/56-3 AJ005304.1/56-3 AF170513.1/56-3 AJ550905.1/56-3 AF170508.1/56-3 AJ550904.1/56-3 AF170498.1/56-3,282-332 56-3,0,53,AJ550905.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184705,AJ550906.1,1,sp|AJ550906.1|PLA550906 Peach latent mosaic viroid complete genome; isolate PC-C36,0,184,282,334,61.44,GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC,AJ550906.1/282-334,56-3 282-334,0,52,AJ550906.1/282-334
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184705,AJ550906.1,1,sp|AJ550906.1|PLA550906 Peach latent mosaic viroid complete genome; isolate PC-C36,1,185,56,3,65.59,CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG,AJ550908.1/56-3 AJ550910.1/56-3 AJ550906.1/56-3,56-3 282-334,0,53,AJ550906.1/56-3
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin ,Rfam/cm/RF00008.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,184706,AJ550907.1,1,sp|AJ550907.1|PLA550907 Peach latent mosaic viroid complete genome; isolate PC-C42,0,186,281,333,56.88,AAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC,AJ550907.1/281-333,56-3 281-333,0,52,AJ550907.1/281-333
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureu