Params: ./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00008_greedy_forwardinf_cfsqp_cycling_Saureus_0MM.bin hmm data/TryAllCm/RF00008_forwardinf_hmmtype1_Saureus_0MM.bin Build: release Host: gattaca.cs.washington.edu pid: 21168 ----cmFile: Rfam/cm/RF00008.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #2402,sp|AB035862.1|AB035862 Rhizoctonia solani plasmid pRS224 pRS-RT gene for reverse transcriptase, complete cds. ----isReversed: 1 ----hitSequence: ACUCGUCUGGGCUUGGGCUCACUGAUGAGGCUUCGGCCGAAACGAGU hit 0 : 908 862 (rev) 35.64 bits :((((((,<<<<<__._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A: :GUCUG:GCUU GC:CACUGAUGAG:C U + G:CGAAAC: :U 4079 -ACUCGUCUGGGCUUgGGCUCACUGAUGAGGC-UU----CG-GCCGAAACGAGU- 4125 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101930,sp|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73 ----isReversed: 1 ----hitSequence: AACUGGUCGUGAUCUGAAACCCGAUCACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC hit 1 : 178624 178566 (rev) 26.84 bits :((((((,<<<<<__......._>>>>>,,,,,,,<<<<________>>>>,,,)))))) 1 CaucaGUCUGugCUU.......AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugau 53 A: :GUC: ::: U ::: :CUGAUGAG::C +G+ UAG::CGAAAC: :U 16239 AACUGGUCGUGAUCUgaaacccGAUCACCUGAUGAGCUCAAGG--UAGAGCGAAACCAGU 16296 : 54 G 54 16297 C 16297 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101930,sp|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73 ----isReversed: 1 ----hitSequence: AACUGGUCGUGAUCUGAAACUCGAUCACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC hit 2 : 173611 173553 (rev) 25.57 bits :((((((,<<<<<__......._>>>>>,,,,,,,<<<<________>>>>,,,)))))) 1 CaucaGUCUGugCUU.......AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugau 53 A: :GUC: ::: U ::: :CUGAUGAG::C +G+ AG::CGAAAC: :U 21252 AACUGGUCGUGAUCUgaaacucGAUCACCUGAUGAGCUCAAGG--CAGAGCGAAACCAGU 21309 : 54 G 54 21310 C 21310 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102300,sp|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project) ----isReversed: 0 ----hitSequence: AACUGGUCGUGAUCUGAAACCCGAUCACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC hit 3 : 89209 89267 (fwd) 26.84 bits :((((((,<<<<<__......._>>>>>,,,,,,,<<<<________>>>>,,,)))))) 1 CaucaGUCUGugCUU.......AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugau 53 A: :GUC: ::: U ::: :CUGAUGAG::C +G+ UAG::CGAAAC: :U 89209 AACUGGUCGUGAUCUgaaacccGAUCACCUGAUGAGCUCAAGG--UAGAGCGAAACCAGU 89266 : 54 G 54 89267 C 89267 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102300,sp|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project) ----isReversed: 0 ----hitSequence: AACUGGUCGUGAUCUGAAACUCGAUCACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC hit 4 : 94222 94280 (fwd) 25.57 bits :((((((,<<<<<__......._>>>>>,,,,,,,<<<<________>>>>,,,)))))) 1 CaucaGUCUGugCUU.......AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugau 53 A: :GUC: ::: U ::: :CUGAUGAG::C +G+ AG::CGAAAC: :U 94222 AACUGGUCGUGAUCUgaaacucGAUCACCUGAUGAGCUCAAGG--CAGAGCGAAACCAGU 94279 : 54 G 54 94280 C 94280 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119282,sp|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21 ----isReversed: 1 ----hitSequence: AACUGGUCGUGAUCUGAAACCCGAUCACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC hit 5 : 77509 77451 (rev) 26.84 bits :((((((,<<<<<__......._>>>>>,,,,,,,<<<<________>>>>,,,)))))) 1 CaucaGUCUGugCUU.......AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugau 53 A: :GUC: ::: U ::: :CUGAUGAG::C +G+ UAG::CGAAAC: :U 352 AACUGGUCGUGAUCUgaaacccGAUCACCUGAUGAGCUCAAGG--UAGAGCGAAACCAGU 409 : 54 G 54 410 C 410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119282,sp|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21 ----isReversed: 1 ----hitSequence: AACUGGUCGUGAUCUGAAACUCGAUCACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC hit 6 : 72496 72438 (rev) 25.57 bits :((((((,<<<<<__......._>>>>>,,,,,,,<<<<________>>>>,,,)))))) 1 CaucaGUCUGugCUU.......AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugau 53 A: :GUC: ::: U ::: :CUGAUGAG::C +G+ AG::CGAAAC: :U 5365 AACUGGUCGUGAUCUgaaacucGAUCACCUGAUGAGCUCAAGG--CAGAGCGAAACCAGU 5422 : 54 G 54 5423 C 5423 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40211,sp|AF170496.1|AF170496 Peach latent mosaic viroid variant #24 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 7 : 284 335 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 284 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40211,sp|AF170496.1|AF170496 Peach latent mosaic viroid variant #24 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 8 : 56 3 (rev) 68.20 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40212,sp|AF170497.1|AF170497 Peach latent mosaic viroid variant #29 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 9 : 284 335 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 284 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40212,sp|AF170497.1|AF170497 Peach latent mosaic viroid variant #29 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 10 : 56 3 (rev) 68.20 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40213,sp|AF170498.1|AF170498 Peach latent mosaic viroid variant #21 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 11 : 283 336 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40213,sp|AF170498.1|AF170498 Peach latent mosaic viroid variant #21 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 12 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 284 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40214,sp|AF170499.1|AF170499 Peach latent mosaic viroid variant #22 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 13 : 285 336 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 285 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40214,sp|AF170499.1|AF170499 Peach latent mosaic viroid variant #22 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 14 : 56 3 (rev) 68.20 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 284 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40215,sp|AF170500.1|AF170500 Peach latent mosaic viroid variant #1 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 15 : 284 335 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 284 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40215,sp|AF170500.1|AF170500 Peach latent mosaic viroid variant #1 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 16 : 56 3 (rev) 68.20 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40216,sp|AF170501.1|AF170501 Peach latent mosaic viroid variant #6 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 17 : 283 334 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 283 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40216,sp|AF170501.1|AF170501 Peach latent mosaic viroid variant #6 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 18 : 56 3 (rev) 68.20 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 282 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40217,sp|AF170502.1|AF170502 Peach latent mosaic viroid variant #7 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 19 : 284 335 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 284 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40217,sp|AF170502.1|AF170502 Peach latent mosaic viroid variant #7 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 20 : 56 3 (rev) 68.20 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40218,sp|AF170503.1|AF170503 Peach latent mosaic viroid variant #8 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AAAGGUCUGUGCUUAGCACACUGACGAGUUCCUGAAAUGGAACGAAACCUUU hit 21 : 281 332 (fwd) 63.61 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A:::GUCUGUGCUUAGCACACUGA+GAGU:CCUGAAAU+G:ACGAAAC:::U 281 -AAAGGUCUGUGCUUAGCACACUGACGAGUUCCUGAAAUGGAACGAAACCUUU- 332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40218,sp|AF170503.1|AF170503 Peach latent mosaic viroid variant #8 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCACUGACGAGUCGCUGGGAUACGGCGAAACUUAUG hit 22 : 55 3 (rev) 58.68 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAG :CACUGA+GAG:C:CUG+ AUA:G:CGAAACU:AUG 282 CAUAAGUCUGGGCUUAG-CCACUGACGAGUCGCUGGGAUACGGCGAAACUUAUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40219,sp|AF170504.1|AF170504 Peach latent mosaic viroid variant #11 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC hit 23 : 284 337 (fwd) 68.37 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 284 GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40219,sp|AF170504.1|AF170504 Peach latent mosaic viroid variant #11 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 24 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 284 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40220,sp|AF170505.1|AF170505 Peach latent mosaic viroid variant #12 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 25 : 285 336 (fwd) 68.80 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 285 -AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40220,sp|AF170505.1|AF170505 Peach latent mosaic viroid variant #12 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 26 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 284 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40221,sp|AF170506.1|AF170506 Peach latent mosaic viroid variant #13 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 27 : 285 336 (fwd) 68.80 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 285 -AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40221,sp|AF170506.1|AF170506 Peach latent mosaic viroid variant #13 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 28 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 284 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40222,sp|AF170507.1|AF170507 Peach latent mosaic viroid variant #15 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 29 : 285 336 (fwd) 68.80 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 285 -AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40222,sp|AF170507.1|AF170507 Peach latent mosaic viroid variant #15 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 30 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 284 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40223,sp|AF170508.1|AF170508 Peach latent mosaic viroid variant #2 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 31 : 283 336 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40223,sp|AF170508.1|AF170508 Peach latent mosaic viroid variant #2 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 32 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 284 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40224,sp|AF170509.1|AF170509 Peach latent mosaic viroid variant #3 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 33 : 284 335 (fwd) 68.80 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 284 -AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40224,sp|AF170509.1|AF170509 Peach latent mosaic viroid variant #3 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUAGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 34 : 56 3 (rev) 63.02 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCU::GCUUAGC::ACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 284 CAUAAGUCUAGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40225,sp|AF170510.1|AF170510 Peach latent mosaic viroid variant #4 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 35 : 286 339 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 286 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40225,sp|AF170510.1|AF170510 Peach latent mosaic viroid variant #4 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 36 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 287 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 340 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40226,sp|AF170511.1|AF170511 Peach latent mosaic viroid variant #5 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 37 : 283 336 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40226,sp|AF170511.1|AF170511 Peach latent mosaic viroid variant #5 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 38 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 284 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40227,sp|AF170512.1|AF170512 Peach latent mosaic viroid variant #11 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 39 : 284 335 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 284 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40227,sp|AF170512.1|AF170512 Peach latent mosaic viroid variant #11 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 40 : 56 3 (rev) 66.49 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40228,sp|AF170513.1|AF170513 Peach latent mosaic viroid variant #15 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 41 : 283 336 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40228,sp|AF170513.1|AF170513 Peach latent mosaic viroid variant #15 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 42 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40229,sp|AF170514.1|AF170514 Peach latent mosaic viroid variant #16 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 43 : 284 335 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 284 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40229,sp|AF170514.1|AF170514 Peach latent mosaic viroid variant #16 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 44 : 56 3 (rev) 66.49 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40230,sp|AF170515.1|AF170515 Peach latent mosaic viroid variant #20 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 45 : 284 335 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 284 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40230,sp|AF170515.1|AF170515 Peach latent mosaic viroid variant #20 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 46 : 56 3 (rev) 68.20 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40231,sp|AF170516.1|AF170516 Peach latent mosaic viroid variant #5 from Prunus persica Agua cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 47 : 283 335 (fwd) 62.40 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 GAAGAGUC-GUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40231,sp|AF170516.1|AF170516 Peach latent mosaic viroid variant #5 from Prunus persica Agua cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 48 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40232,sp|AF170517.1|AF170517 Peach latent mosaic viroid variant #11 from Prunus persica Agua cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 49 : 284 334 (fwd) 61.94 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 284 -AAGAGUC-GUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40232,sp|AF170517.1|AF170517 Peach latent mosaic viroid variant #11 from Prunus persica Agua cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGACCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 50 : 56 3 (rev) 63.12 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG: CUUAG :CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUUAGACCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40233,sp|AF170518.1|AF170518 Peach latent mosaic viroid variant #2 from Prunus persica Suncrest cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 51 : 281 334 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 281 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40233,sp|AF170518.1|AF170518 Peach latent mosaic viroid variant #2 from Prunus persica Suncrest cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 52 : 55 3 (rev) 60.13 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAG :CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUUAG-CCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40234,sp|AF170519.1|AF170519 Peach latent mosaic viroid variant #1 from Prunus persica Golden Health cultivar, complete sequence. ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 53 : 282 333 (fwd) 68.80 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 -AAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40234,sp|AF170519.1|AF170519 Peach latent mosaic viroid variant #1 from Prunus persica Golden Health cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 54 : 55 3 (rev) 60.13 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAG :CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUUAG-CCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40235,sp|AF170520.1|AF170520 Peach latent mosaic viroid variant #1 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC hit 55 : 282 335 (fwd) 69.62 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 282 GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40235,sp|AF170520.1|AF170520 Peach latent mosaic viroid variant #1 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 56 : 55 3 (rev) 60.11 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCUUAG :CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUUAG-CCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40236,sp|AF170521.1|AF170521 Peach latent mosaic viroid variant #2 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC hit 57 : 282 335 (fwd) 69.62 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 282 GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40236,sp|AF170521.1|AF170521 Peach latent mosaic viroid variant #2 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 58 : 55 3 (rev) 60.11 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCUUAG :CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUUAG-CCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40237,sp|AF170522.1|AF170522 Peach latent mosaic viroid variant #3 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC hit 59 : 282 335 (fwd) 69.62 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 282 GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40237,sp|AF170522.1|AF170522 Peach latent mosaic viroid variant #3 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 60 : 55 3 (rev) 60.11 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCUUAG :CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUUAG-CCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40238,sp|AF170523.1|AF170523 Peach latent mosaic viroid variant #4 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 0 ----hitSequence: GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC hit 61 : 282 335 (fwd) 69.62 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 282 GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40238,sp|AF170523.1|AF170523 Peach latent mosaic viroid variant #4 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 62 : 55 3 (rev) 60.11 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCUUAG :CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUUAG-CCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64798,sp|AF339739.1|AF339739 Peach latent mosaic viroid peach isolate, complete genome. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 63 : 281 334 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 281 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64798,sp|AF339739.1|AF339739 Peach latent mosaic viroid peach isolate, complete genome. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG hit 64 : 56 3 (rev) 64.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG C: UGA AUA:G CGAAACU:AUG 281 CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64799,sp|AF339740.1|AF339740 Peach latent mosaic viroid wild pear isolate, complete genome. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 65 : 282 335 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64799,sp|AF339740.1|AF339740 Peach latent mosaic viroid wild pear isolate, complete genome. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG hit 66 : 56 3 (rev) 62.39 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CG AACU:AUG 283 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64800,sp|AF339741.1|AF339741 Peach latent mosaic viroid cherry isolate, complete genome. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 67 : 281 334 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 281 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64800,sp|AF339741.1|AF339741 Peach latent mosaic viroid cherry isolate, complete genome. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 68 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 282 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64801,sp|AF339742.1|AF339742 Peach latent mosaic viroid plum isolate, complete genome. ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC hit 69 : 282 335 (fwd) 69.26 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 GAAGAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64801,sp|AF339742.1|AF339742 Peach latent mosaic viroid plum isolate, complete genome. ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 70 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #136599,sp|M63666.1|BYDSATRN Cereal yellow dwarf virus-RPA satellite RNA. ----isReversed: 1 ----hitSequence: CCGGUGUCUCAAGGUGCGUACCUUGACUGAUGAGUCCGAAAGGACGAAACACCAG hit 71 : 246 192 (rev) 46.75 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 C::::GUCU:::: U ::::ACUGAUGAGUCC++ +AGGACGAAAC::::G 77 CCGGUGUCUCAAGGUgcguaCCUUGACUGAUGAGUCCGA----AAGGACGAAACACCAG 131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137422,sp|AJ247112.1|CCH247112 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 1 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA hit 72 : 133 53 (rev) 43.90 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 267 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcuuucgcuuuac 325 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 326 ucccgCACAAGCCGAAACUGGA- 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137423,sp|AJ247113.1|CCH247113 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 2 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUUGCUUUACUCCCGCACAAGCCGAAACUGGA hit 73 : 134 53 (rev) 43.82 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 268 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcaaauugcuuua 326 ......____>>>>,,,)))))): 37 ......aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 327 cucccgCACAAGCCGAAACUGGA- 349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137424,sp|AJ247114.1|CCH247114 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 3 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA hit 74 : 133 53 (rev) 43.90 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 267 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcuuucgcuuuac 325 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 326 ucccgCACAAGCCGAAACUGGA- 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137425,sp|AJ247115.1|CCH247115 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 4 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA hit 75 : 133 53 (rev) 43.90 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 268 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcuuucgcuuuac 326 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 327 ucccgCACAAGCCGAAACUGGA- 348 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137426,sp|AJ247116.1|CCH247116 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 6 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUACUGAUGAGGCUGUGGAGAGAGCGAAAGCUUUACUCCCACACAAGCCGAAACUGGA hit 76 : 133 53 (rev) 41.99 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGAUGAG:C:+UG+ 267 -UCCAGUCGAGACCUgaagugGGUUUACUGAUGAGGCUGUGGagagagcgaaagcuuuac 325 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 326 ucccaCACAAGCCGAAACUGGA- 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137427,sp|AJ247117.1|CCH247117 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 7 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA hit 77 : 133 53 (rev) 43.90 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 268 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcuuucgcuuuac 326 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 327 ucccgCACAAGCCGAAACUGGA- 348 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137428,sp|AJ247118.1|CCH247118 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 25 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA hit 78 : 133 53 (rev) 43.90 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 266 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcuuucgcuuuac 324 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 325 ucccgCACAAGCCGAAACUGGA- 346 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137429,sp|AJ247119.1|CCH247119 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 26 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA hit 79 : 131 51 (rev) 43.90 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 267 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcuuucgcuuuac 325 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 326 ucccgCACAAGCCGAAACUGGA- 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137430,sp|AJ247120.1|CCH247120 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 30 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA hit 80 : 133 53 (rev) 43.90 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 267 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcuuucgcuuuac 325 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 326 ucccgCACAAGCCGAAACUGGA- 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137431,sp|AJ247121.1|CCH247121 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 35 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGCUUUACUCCCGCACAAGCCGAAACUGGA hit 81 : 133 53 (rev) 43.90 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 267 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcuuucgcuuuac 325 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 326 ucccgCACAAGCCGAAACUGGA- 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137432,sp|AJ247122.1|CCH247122 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 38 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUAUUGCUUUACUCCCGCACAAGCCGAAACUGGA hit 82 : 132 52 (rev) 43.90 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGA+GAG:C:+UG+ 267 -UCCAGUCGAGACCUgaagugGGUUUCCUGACGAGGCUGUGGagagagcuauugcuuuac 325 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 326 ucccgCACAAGCCGAAACUGGA- 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137433,sp|AJ247123.1|CCH247123 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 41 ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAGCUUUACUCCCGCACAAGCCGAAACUGGA hit 83 : 132 52 (rev) 44.24 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGAUGAG:C:+UG+ 267 -UCCAGUCGAGACCUgaagugGGUUUCCUGAUGAGGCUGUGGagagagcgaaagcuuuac 325 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 326 ucccgCACAAGCCGAAACUGGA- 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137438,sp|Y14700.1|CCMVCM5 Chrysanthemum chlorotic mottle viroid ----isReversed: 1 ----hitSequence: UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAGCUUUACUCCCACACAAGCCGAAACUGGA hit 84 : 133 53 (rev) 44.24 bits :((((((,<<<<<__......_>>>>>,,,,,,,<<<<____.................. 1 CaucaGUCUGugCUU......AGcaCACUGAUGAGuCccUGA.................. 36 ::CAGUC::::C U G::::CUGAUGAG:C:+UG+ 267 -UCCAGUCGAGACCUgaagugGGUUUCCUGAUGAGGCUGUGGagagagcgaaagcuuuac 325 .....____>>>>,,,)))))): 37 .....aAuAgGaCGAAACugauG 54 +A A:G:CGAAACUG:: 326 ucccaCACAAGCCGAAACUGGA- 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #138243,sp|Y12833.1|CSCVLRNA Cherry small circular viroid-like RNA, satellite RNA ----isReversed: 1 ----hitSequence: CGCUAUAUGGGGAUGUGUGUCCCUACUGACGAGUUCAAAAGAACGAAAUAGUU hit 85 : 338 286 (rev) 38.62 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 ::C::U U::G: U :C::ACUGA+GAGU:C + +AG:ACGAAA::G:: 114 -CGCUAUAUGGGGAUgugugUCCCUACUGACGAGUUCAA----AAGAACGAAAUAGUU- 166 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140420,sp|AJ536612.1|ELA536612 Eggplant latent viroid complete genome, isolate 1 ----isReversed: 1 ----hitSequence: CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGGGCGAAACGGUA hit 86 : 205 153 (rev) 38.33 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 ::C:GUC:G::: U :::C:CUGAUGAG:CC++ +AGG:CGAAAC:G:: 131 -CACCGUCGGAAAGUgugcgCUUUCCCUGAUGAGCCCGA----AAGGGCGAAACGGUA- 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140421,sp|AJ536613.1|ELA536613 Eggplant latent viroid complete genome, isolate 2 ----isReversed: 1 ----hitSequence: CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGAAAGGACGAAACGGUAC hit 87 : 205 151 (rev) 41.67 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 C::C:GUC:G::: U :::C:CUGAUGAGUCC++ +AGGACGAAAC:G:: 129 CCACCGUCGGAAAGUguguaCUUUCCCUGAUGAGUCCGA----AAGGACGAAACGGUAC 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140422,sp|AJ536614.1|ELA536614 Eggplant latent viroid complete genome, isolate 3 ----isReversed: 1 ----hitSequence: CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAAAAGGGCGAAACGGUA hit 88 : 205 153 (rev) 37.31 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 ::C:GUC:G::: U :::C:CUGAUGAG:CC + +AGG:CGAAAC:G:: 131 -CACCGUCGGAAAGUgugcgCUUUCCCUGAUGAGCCCAA----AAGGGCGAAACGGUA- 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140423,sp|AJ536615.1|ELA536615 Eggplant latent viroid complete genome, isolate 4 ----isReversed: 1 ----hitSequence: CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGAGCGAAACGGUA hit 89 : 205 153 (rev) 32.72 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 ::C:GUC:G::: U :::C:CUGAUGAG: C++ +AG :CGAAAC:G:: 130 -CACCGUCGGAAAGUgugcgCUUUCCCUGAUGAGCCCGA----AAGAGCGAAACGGUA- 182 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140424,sp|AJ536616.1|ELA536616 Eggplant latent viroid complete genome, isolate 5 ----isReversed: 1 ----hitSequence: CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGGGCGAAACGGUA hit 90 : 205 153 (rev) 38.33 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 ::C:GUC:G::: U :::C:CUGAUGAG:CC++ +AGG:CGAAAC:G:: 131 -CACCGUCGGAAAGUgugcgCUUUCCCUGAUGAGCCCGA----AAGGGCGAAACGGUA- 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140425,sp|AJ536617.1|ELA536617 Eggplant latent viroid complete genome, isolate 6 ----isReversed: 1 ----hitSequence: CACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGGGCGAAACGGUA hit 91 : 205 153 (rev) 38.33 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 ::C:GUC:G::: U :::C:CUGAUGAG:CC++ +AGG:CGAAAC:G:: 131 -CACCGUCGGAAAGUgugcgCUUUCCCUGAUGAGCCCGA----AAGGGCGAAACGGUA- 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140426,sp|AJ536618.1|ELA536618 Eggplant latent viroid complete genome, isolate 7 ----isReversed: 1 ----hitSequence: CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGAAAGGACGAAACGGUAC hit 92 : 204 150 (rev) 41.67 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 C::C:GUC:G::: U :::C:CUGAUGAGUCC++ +AGGACGAAAC:G:: 129 CCACCGUCGGAAAGUguguaCUUUCCCUGAUGAGUCCGA----AAGGACGAAACGGUAC 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140427,sp|AJ536619.1|ELA536619 Eggplant latent viroid complete genome, isolate 8 ----isReversed: 1 ----hitSequence: CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGAAAGGACGAAACGGUAC hit 93 : 206 152 (rev) 41.67 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 C::C:GUC:G::: U :::C:CUGAUGAGUCC++ +AGGACGAAAC:G:: 129 CCACCGUCGGAAAGUguguaCUUUCCCUGAUGAGUCCGA----AAGGACGAAACGGUAC 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140428,sp|AJ536620.1|ELA536620 Eggplant latent viroid complete genome, isolate 9 ----isReversed: 1 ----hitSequence: CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAAAAGGGCGAAACGGUAC hit 94 : 206 152 (rev) 38.98 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 C::C:GUC:G::: U :::C:CUGAUGAG:CC + +AGG:CGAAAC:G:: 130 CCACCGUCGGAAAGUgugcgCUUUCCCUGAUGAGCCCAA----AAGGGCGAAACGGUAC 184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #180957,sp|X01984.1|LTSVARN2 Lucerne transient streak virus satellite RNA (LTSV-A) RNA 2 sequence ----isReversed: 1 ----hitSequence: CAGACGUAUGAGACUGACUGAAACGCCGUCUCACUGAUGAGGCCAUGGCAGGCCGAAACGUCCG hit 95 : 170 107 (rev) 34.71 bits :((((((,<<<<<__............_>>>>>,,,,,,,<<<<________>>>>,,,) 1 CaucaGUCUGugCUU............AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAA 48 C :::GU UG:G: U :C:CACUGAUGAG:CC UG+ AGG:CGAAA 155 CAGACGUAUGAGACUgacugaaacgccGUCUCACUGAUGAGGCCAUGG--CAGGCCGAAA 212 ))))): 49 CugauG 54 C::: G 213 CGUCCG 218 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #180958,sp|X01985.1|LTSVNRN2 Lucerne transient streak virus (LTSV-N) RNA2 sequence ----isReversed: 1 ----hitSequence: CAGACGUAUGAGACUGACUGAUAGCCGUCUCACUGAUGAGGCCAUGGCAGGCCGAAACGUCCG hit 96 : 169 107 (rev) 35.03 bits :((((((,<<<<<__..........._>>>>>,,,,,,,<<<<________>>>>,,,)) 1 CaucaGUCUGugCUU...........AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAAC 49 C :::GU UG:G: U :C:CACUGAUGAG:CC UG+ AGG:CGAAAC 156 CAGACGUAUGAGACUgacugauagccGUCUCACUGAUGAGGCCAUGG--CAGGCCGAAAC 213 )))): 50 ugauG 54 ::: G 214 GUCCG 218 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #181766,sp|D00341.1|MTSCA Lucerne transient streak virus (LTSV-C) satellite RNA, complete sequence. ----isReversed: 0 ----hitSequence: CAUACGUCUGAGCGUGAUACUCGCUCACUGAAGAUGGCCUAGUAAGGCCGAAACGUAGU hit 97 : 160 218 (fwd) 25.12 bits :((((((,<<<<<__......_>>>>>,,,,,,,.<<<<___._____>>>>,,,))))) 1 CaucaGUCUGugCUU......AGcaCACUGAUGA.GuCccUG.AaAuAgGaCGAAACuga 52 C U::GUCUG:GC U GC:CACUGA GA G:CC +G +AGG:CGAAAC::A 160 CAUACGUCUGAGCGUgauacuCGCUCACUGAAGAuGGCCUAGu---AAGGCCGAAACGUA 216 ): 53 uG 54 217 GU 218 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #181766,sp|D00341.1|MTSCA Lucerne transient streak virus (LTSV-C) satellite RNA, complete sequence. ----isReversed: 1 ----hitSequence: AGACGUAUGAGAGACUGACUGAAACCGUCUCACUGAUGAGGCCAUGGUAGGCCGAAACGUCC hit 98 : 168 107 (rev) 31.09 bits :((((((,<<<<<__............_>>>>>,,,,,,,<<<<________>>>>,,,) 1 CaucaGUCUGugCUU............AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAA 48 :::GU UG:G: + :C:CACUGAUGAG:CC UG+ UAGG:CGAAA 155 -AGACGUAUGAGAGAcugacugaaaccGUCUCACUGAUGAGGCCAUGG--UAGGCCGAAA 211 ))))): 49 CugauG 54 C::: 212 CGUCC- 216 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #182993,sp|J02386.1|NOR2 Solanum nodiflorum mottle virus satellite RNA. ----isReversed: 0 ----hitSequence: GUCCGUAGUGGAUGUGUAUCCACUCUGAUGAGUCCAAAAGGACGAAACGGAU hit 99 : 43 94 (fwd) 41.95 bits :((((((,<<<<<__....._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.....AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 :UC:GU GUG: U :CAC+CUGAUGAGUCC + +AGGACGAAAC:GA: 43 -GUCCGUA-GUGGAUguguaUCCACUCUGAUGAGUCCAA----AAGGACGAAACGGAU- 94 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184662,sp|AJ241818.1|PLA241818 peach latent mosaic viroid, varient gds6-1b ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 100 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184662,sp|AJ241818.1|PLA241818 peach latent mosaic viroid, varient gds6-1b ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 101 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184663,sp|AJ241819.1|PLA241819 peach latent mosaic viroid, varient gds6-1 ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 102 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184663,sp|AJ241819.1|PLA241819 peach latent mosaic viroid, varient gds6-1 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG hit 103 : 56 3 (rev) 65.14 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGAAAUA:G:CGAAACU: UG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184664,sp|AJ241820.1|PLA241820 peach latent mosaic viroid, varient gds6-3 ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 104 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184664,sp|AJ241820.1|PLA241820 peach latent mosaic viroid, varient gds6-3 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 105 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184665,sp|AJ241821.1|PLA241821 peach latent mosaic viroid, varient gds6-7 ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 106 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184665,sp|AJ241821.1|PLA241821 peach latent mosaic viroid, varient gds6-7 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 107 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184666,sp|AJ241822.1|PLA241822 peach latent mosaic viroid, varient gds6-8 ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 108 : 283 333 (fwd) 60.68 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUC-GUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184666,sp|AJ241822.1|PLA241822 peach latent mosaic viroid, varient gds6-8 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 109 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184667,sp|AJ241823.1|PLA241823 peach latent mosaic viroid, varient gds6-11 ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUAAAAUGAGACGAAACUCUU hit 110 : 283 334 (fwd) 62.88 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CU AAAU+:GACGAAACU::U 283 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUAAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184667,sp|AJ241823.1|PLA241823 peach latent mosaic viroid, varient gds6-11 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 111 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184668,sp|AJ241824.1|PLA241824 peach latent mosaic viroid, varient gds6-12 ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 112 : 283 334 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184668,sp|AJ241824.1|PLA241824 peach latent mosaic viroid, varient gds6-12 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 113 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184669,sp|AJ241825.1|PLA241825 peach latent mosaic viroid, varient gds6-22 ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 114 : 283 334 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184669,sp|AJ241825.1|PLA241825 peach latent mosaic viroid, varient gds6-22 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 115 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184670,sp|AJ241826.1|PLA241826 peach latent mosaic viroid, varient gds15-1s ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 116 : 283 334 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184670,sp|AJ241826.1|PLA241826 peach latent mosaic viroid, varient gds15-1s ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 117 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184671,sp|AJ241827.1|PLA241827 peach latent mosaic viroid, varient gds15-2s ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 118 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184671,sp|AJ241827.1|PLA241827 peach latent mosaic viroid, varient gds15-2s ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 119 : 56 3 (rev) 66.49 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184672,sp|AJ241828.1|PLA241828 peach latent mosaic viroid, varient gds15-4s ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAAUGAGACGAAACUCUU hit 120 : 282 334 (fwd) 61.83 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<____.____>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGA.aAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGA AAU+:GACGAAACU::U 282 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAaAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184672,sp|AJ241828.1|PLA241828 peach latent mosaic viroid, varient gds15-4s ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 121 : 56 3 (rev) 61.62 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:G:U+A:C:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 281 CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184673,sp|AJ241829.1|PLA241829 peach latent mosaic viroid, varient gds15-5s ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 122 : 280 331 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 280 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 331 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184673,sp|AJ241829.1|PLA241829 peach latent mosaic viroid, varient gds15-5s ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 123 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 280 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184674,sp|AJ241830.1|PLA241830 peach latent mosaic viroid, varient gds15-6s ----isReversed: 0 ----hitSequence: AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 124 : 282 334 (fwd) 62.41 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUC-GUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184674,sp|AJ241830.1|PLA241830 peach latent mosaic viroid, varient gds15-6s ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 125 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 282 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184675,sp|AJ241831.1|PLA241831 peach latent mosaic viroid, varient gds15-4as ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 126 : 282 333 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184675,sp|AJ241831.1|PLA241831 peach latent mosaic viroid, varient gds15-4as ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG hit 127 : 56 3 (rev) 63.07 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184676,sp|AJ241832.1|PLA241832 peach latent mosaic viroid, varient gds15-6as ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 128 : 283 333 (fwd) 60.68 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUC-GUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184676,sp|AJ241832.1|PLA241832 peach latent mosaic viroid, varient gds15-6as ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 129 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184677,sp|AJ241833.1|PLA241833 peach latent mosaic viroid, varient gds15-7as ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 130 : 283 333 (fwd) 60.68 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUC-GUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184677,sp|AJ241833.1|PLA241833 peach latent mosaic viroid, varient gds15-7as ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 131 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184678,sp|AJ241834.1|PLA241834 peach latent mosaic viroid, varient gds15-10as ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 132 : 283 334 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184678,sp|AJ241834.1|PLA241834 peach latent mosaic viroid, varient gds15-10as ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 133 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184679,sp|AJ241835.1|PLA241835 peach latent mosaic viroid, varient gds15-11as ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 134 : 282 333 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184679,sp|AJ241835.1|PLA241835 peach latent mosaic viroid, varient gds15-11as ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 135 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184680,sp|AJ241836.1|PLA241836 peach latent mosaic viroid, varient gds15-12as ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 136 : 282 333 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184680,sp|AJ241836.1|PLA241836 peach latent mosaic viroid, varient gds15-12as ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 137 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184681,sp|AJ241837.1|PLA241837 peach latent mosaic viroid, varient gds15-18as ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 138 : 283 334 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184681,sp|AJ241837.1|PLA241837 peach latent mosaic viroid, varient gds15-18as ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 139 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184682,sp|AJ241838.1|PLA241838 peach latent mosaic viroid, varient esc10-1 ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 140 : 283 334 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 283 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184682,sp|AJ241838.1|PLA241838 peach latent mosaic viroid, varient esc10-1 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG hit 141 : 56 3 (rev) 58.72 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:::CUGAAAU+:::C AAACU::UG 282 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184683,sp|AJ241839.1|PLA241839 peach latent mosaic viroid, varient esc10-2 ----isReversed: 0 ----hitSequence: AUGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 142 : 283 333 (fwd) 60.71 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUC GUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 283 -AUGAGUC-GUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184683,sp|AJ241839.1|PLA241839 peach latent mosaic viroid, varient esc10-2 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 143 : 56 3 (rev) 68.20 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 281 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184684,sp|AJ241840.1|PLA241840 peach latent mosaic viroid, varient esc10-3 ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 144 : 283 334 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 283 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184684,sp|AJ241840.1|PLA241840 peach latent mosaic viroid, varient esc10-3 ----isReversed: 1 ----hitSequence: CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 145 : 56 3 (rev) 67.00 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 282 CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184685,sp|AJ241841.1|PLA241841 peach latent mosaic viroid, varient esc10-4 ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 146 : 284 335 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 284 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184685,sp|AJ241841.1|PLA241841 peach latent mosaic viroid, varient esc10-4 ----isReversed: 1 ----hitSequence: CAAAAGUUUGGGCUAAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 147 : 57 3 (rev) 61.15 bits :((((((,<<<<<__._>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUU.AGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGU UG:GCU+ AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 282 CAAAAGUUUGGGCUAaAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184686,sp|AJ241842.1|PLA241842 peach latent mosaic viroid, varient esc10-5 ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 148 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184686,sp|AJ241842.1|PLA241842 peach latent mosaic viroid, varient esc10-5 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 149 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184687,sp|AJ241843.1|PLA241843 peach latent mosaic viroid, varient esc10-6b ----isReversed: 0 ----hitSequence: AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU hit 150 : 281 332 (fwd) 67.57 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AU 281 -AUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAU- 332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184687,sp|AJ241843.1|PLA241843 peach latent mosaic viroid, varient esc10-6b ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG hit 151 : 56 3 (rev) 64.23 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCUUAGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU: UG 280 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184688,sp|AJ241844.1|PLA241844 peach latent mosaic viroid, varient esc10-12 ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 152 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184688,sp|AJ241844.1|PLA241844 peach latent mosaic viroid, varient esc10-12 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 153 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184689,sp|AJ241845.1|PLA241845 peach latent mosaic viroid, varient esc10-13 ----isReversed: 0 ----hitSequence: GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG hit 154 : 282 335 (fwd) 69.25 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 AU:AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU:AUG 282 GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184689,sp|AJ241845.1|PLA241845 peach latent mosaic viroid, varient esc10-13 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG hit 155 : 56 3 (rev) 68.20 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C:CUGAAAU+:G:CGAAACU::UG 282 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184690,sp|AJ241846.1|PLA241846 peach latent mosaic viroid, varient ls11-2b ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 156 : 283 334 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184690,sp|AJ241846.1|PLA241846 peach latent mosaic viroid, varient ls11-2b ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 157 : 56 3 (rev) 66.49 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184691,sp|AJ241847.1|PLA241847 peach latent mosaic viroid, varient ls11-3 ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG hit 158 : 281 334 (fwd) 64.75 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGU::CUGAAAU+::ACGAAACU::UG 281 GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184691,sp|AJ241847.1|PLA241847 peach latent mosaic viroid, varient ls11-3 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 159 : 56 3 (rev) 66.49 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184692,sp|AJ241848.1|PLA241848 peach latent mosaic viroid, varient ls11-4 ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 160 : 281 334 (fwd) 69.22 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 281 GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184692,sp|AJ241848.1|PLA241848 peach latent mosaic viroid, varient ls11-4 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 161 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 282 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184693,sp|AJ241849.1|PLA241849 peach latent mosaic viroid, varient ls11-6 ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 162 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184693,sp|AJ241849.1|PLA241849 peach latent mosaic viroid, varient ls11-6 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 163 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 283 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184694,sp|AJ241850.1|PLA241850 peach latent mosaic viroid, varient ls11-12 ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAAGAGACGAAACUCUU hit 164 : 283 333 (fwd) 60.50 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCU+AGCACACUGAUGAGUC:CUGAAA++:GACGAAACU::U 283 -AAGAGUC-GUGCUAAGCACACUGAUGAGUCUCUGAAAAGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184694,sp|AJ241850.1|PLA241850 peach latent mosaic viroid, varient ls11-12 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 165 : 56 3 (rev) 66.49 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184696,sp|AJ550545.1|PLA550545 Peach latent mosaic viroid complete genome, isolate PC-C31 ----isReversed: 0 ----hitSequence: GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC hit 166 : 282 335 (fwd) 61.67 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUG GCU+AGC CACUGAUGAGUC: UGA AUA:GACGAAACU::U 282 GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184696,sp|AJ550545.1|PLA550545 Peach latent mosaic viroid complete genome, isolate PC-C31 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG hit 167 : 56 3 (rev) 61.21 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UG A A:G:CGAAACU:AUG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184697,sp|AJ550898.1|PLA550898 Peach latent mosaic viroid complete genome, isolate PC-C39 ----isReversed: 0 ----hitSequence: GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUC hit 168 : 282 335 (fwd) 62.63 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUG GCU+AGC CACUGAUGAGUC: UGAAAUA:GACGAAACU::U 282 GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184697,sp|AJ550898.1|PLA550898 Peach latent mosaic viroid complete genome, isolate PC-C39 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG hit 169 : 56 3 (rev) 61.21 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UG A A:G:CGAAACU:AUG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184698,sp|AJ550899.1|PLA550899 Peach latent mosaic viroid complete genome, isolate PC-C41 ----isReversed: 0 ----hitSequence: GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC hit 170 : 282 335 (fwd) 61.67 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUG GCU+AGC CACUGAUGAGUC: UGA AUA:GACGAAACU::U 282 GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184698,sp|AJ550899.1|PLA550899 Peach latent mosaic viroid complete genome, isolate PC-C41 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG hit 171 : 56 3 (rev) 62.48 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UG AUA:G:CGAAACU:AUG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184699,sp|AJ550900.1|PLA550900 Peach latent mosaic viroid complete genome, isolate PC-C34 ----isReversed: 0 ----hitSequence: GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC hit 172 : 282 335 (fwd) 61.67 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUG GCU+AGC CACUGAUGAGUC: UGA AUA:GACGAAACU::U 282 GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184699,sp|AJ550900.1|PLA550900 Peach latent mosaic viroid complete genome, isolate PC-C34 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG hit 173 : 56 3 (rev) 61.21 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UG A A:G:CGAAACU:AUG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184700,sp|AJ550901.1|PLA550901 Peach latent mosaic viroid complete genome, isolate PC-C38 ----isReversed: 0 ----hitSequence: GAAGAGUCGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC hit 174 : 282 334 (fwd) 54.81 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC G GCU+AGC CACUGAUGAGUC: UGA AUA:GACGAAACU::U 282 GAAGAGUC-GCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184700,sp|AJ550901.1|PLA550901 Peach latent mosaic viroid complete genome, isolate PC-C38 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG hit 175 : 56 3 (rev) 62.48 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCU+AGC:CACUGAUGAG:C: UG AUA:G:CGAAACU:AUG 281 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184701,sp|AJ550902.1|PLA550902 Peach latent mosaic viroid complete genome, isolate PC-C33 ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 176 : 282 332 (fwd) 61.94 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 -AAGAGUC-GUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184701,sp|AJ550902.1|PLA550902 Peach latent mosaic viroid complete genome, isolate PC-C33 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 177 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 281 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184702,sp|AJ550903.1|PLA550903 Peach latent mosaic viroid complete genome, isolate PC-C27 ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 178 : 282 332 (fwd) 61.94 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 -AAGAGUC-GUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184702,sp|AJ550903.1|PLA550903 Peach latent mosaic viroid complete genome, isolate PC-C27 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 179 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 281 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184703,sp|AJ550904.1|PLA550904 Peach latent mosaic viroid complete genome, isolate PC-C29 ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 180 : 282 332 (fwd) 61.94 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 -AAGAGUC-GUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184703,sp|AJ550904.1|PLA550904 Peach latent mosaic viroid complete genome, isolate PC-C29 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 181 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 281 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184704,sp|AJ550905.1|PLA550905 Peach latent mosaic viroid complete genome, isolate PC-C32 ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 182 : 282 332 (fwd) 61.94 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCUUAGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 282 -AAGAGUC-GUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184704,sp|AJ550905.1|PLA550905 Peach latent mosaic viroid complete genome, isolate PC-C32 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG hit 183 : 56 3 (rev) 67.74 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU:AUG 281 CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184705,sp|AJ550906.1|PLA550906 Peach latent mosaic viroid complete genome, isolate PC-C36 ----isReversed: 0 ----hitSequence: GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC hit 184 : 282 334 (fwd) 61.44 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCUUAGCACACUGAUGAGUC:CUGA AU+:GACGAAACU::U 282 GAAGAGUC-GUGCUUAGCACACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184705,sp|AJ550906.1|PLA550906 Peach latent mosaic viroid complete genome, isolate PC-C36 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG hit 185 : 56 3 (rev) 65.59 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAGUC:CUG AU+:GACGAAACU:AUG 293 CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG 346 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184706,sp|AJ550907.1|PLA550907 Peach latent mosaic viroid complete genome, isolate PC-C42 ----isReversed: 0 ----hitSequence: AAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC hit 186 : 281 333 (fwd) 56.88 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC G GCUUAGC CACUGAUGAGUC:CUGA AU+:GACGAAACU::U 281 AAAGAGUC-GCGCUUAGCGCACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184706,sp|AJ550907.1|PLA550907 Peach latent mosaic viroid complete genome, isolate PC-C42 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCUACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG hit 187 : 56 3 (rev) 62.97 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCU::GCUUAGC::ACUGAUGAGUC:CUG AU+:GACGAAACU:AUG 293 CAUAAGUCUGGGCUUAGCCUACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG 346 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184707,sp|AJ550908.1|PLA550908 Peach latent mosaic viroid complete genome, isolate PC-C30 ----isReversed: 0 ----hitSequence: GAAGAGUCUGCGCUUAGCGCACUCAUGAGUCUCUGAGAUGAGACGAAACUCUUC hit 188 : 281 334 (fwd) 57.83 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUG GCUUAGC CACU AUGAGUC:CUGA AU+:GACGAAACU::U 281 GAAGAGUCUGCGCUUAGCGCACUCAUGAGUCUCUGAGAUGAGACGAAACUCUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184707,sp|AJ550908.1|PLA550908 Peach latent mosaic viroid complete genome, isolate PC-C30 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG hit 189 : 56 3 (rev) 65.59 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAGUC:CUG AU+:GACGAAACU:AUG 294 CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184708,sp|AJ550909.1|PLA550909 Peach latent mosaic viroid complete genome, isolate PC-C35 ----isReversed: 0 ----hitSequence: GAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAAUGAGACGAAACUCUUC hit 190 : 282 333 (fwd) 50.62 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC G GCUUAGC CACUGAUGAGUC:CUGAA U+:GACGAAACU::U 282 GAAGAGUC-GCGCUUAGCGCACUGAUGAGUCUCUGAA-UGAGACGAAACUCUUC 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184708,sp|AJ550909.1|PLA550909 Peach latent mosaic viroid complete genome, isolate PC-C35 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUG hit 191 : 56 3 (rev) 63.15 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAGU::CUG AU+::ACGAAACU:AUG 293 CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUG 346 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184709,sp|AJ550910.1|PLA550910 Peach latent mosaic viroid complete genome, isolate PC-C37 ----isReversed: 0 ----hitSequence: GAAGAGUCCUGCGCUUAGCGCACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC hit 192 : 282 336 (fwd) 55.91 bits :((((((,.<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUC.UGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC UG GCUUAGC CACUGA+GAGUC:CUGA AU+:GACGAAACU::U 282 GAAGAGUCcUGCGCUUAGCGCACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184709,sp|AJ550910.1|PLA550910 Peach latent mosaic viroid complete genome, isolate PC-C37 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG hit 193 : 56 3 (rev) 65.59 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CAU:AGUCUG:GCUUAGC:CACUGAUGAGUC:CUG AU+:GACGAAACU:AUG 296 CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG 349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184710,sp|AJ550911.1|PLA550911 Peach latent mosaic viroid complete genome, isolate PC-C28 ----isReversed: 0 ----hitSequence: GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUC hit 194 : 282 335 (fwd) 67.67 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGA+GAGUC:CUGAAAU+:GACGAAACU::U 282 GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184710,sp|AJ550911.1|PLA550911 Peach latent mosaic viroid complete genome, isolate PC-C28 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAAACGCAACGAAACUUUUG hit 195 : 56 3 (rev) 66.15 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAGU::CUGAAA +::ACGAAACU::UG 294 CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAAACGCAACGAAACUUUUG 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184711,sp|AJ550912.1|PLA550912 Peach latent mosaic viroid complete genome, isolate PC-C40 ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 196 : 283 334 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184711,sp|AJ550912.1|PLA550912 Peach latent mosaic viroid complete genome, isolate PC-C40 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUG hit 197 : 56 3 (rev) 64.43 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAGU::CUGA AU+::ACGAAACU::UG 294 CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUG 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184721,sp|AJ005294.1|PLMAJ5294 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds2 ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 198 : 283 333 (fwd) 60.68 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUC-GUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184721,sp|AJ005294.1|PLMAJ5294 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds2 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 199 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 282 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184722,sp|AJ005295.1|PLMAJ5295 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds21 ----isReversed: 0 ----hitSequence: AAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 200 : 283 333 (fwd) 60.68 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUC GUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUC-GUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184722,sp|AJ005295.1|PLMAJ5295 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds21 ----isReversed: 1 ----hitSequence: CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 201 : 56 3 (rev) 66.47 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA::AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU::UG 282 CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184723,sp|AJ005296.1|PLMAJ5296 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds15 ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 202 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184723,sp|AJ005296.1|PLMAJ5296 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds15 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 203 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184724,sp|AJ005297.1|PLMAJ5297 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds23 ----isReversed: 0 ----hitSequence: AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG hit 204 : 282 335 (fwd) 69.27 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::UG 282 AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184724,sp|AJ005297.1|PLMAJ5297 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds23 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 205 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184725,sp|AJ005298.1|PLMAJ5298 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds18 ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU hit 206 : 283 334 (fwd) 67.54 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 A::AGUCUGUGCU+AGCACACUGAUGAGUC:CUGAAAU+:GACGAAACU::U 283 -AAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUU- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184725,sp|AJ005298.1|PLMAJ5298 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds18 ----isReversed: 1 ----hitSequence: CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG hit 207 : 56 3 (rev) 64.18 bits :((((((,<<<<<___>>>>>,,,,,,,<<<<________>>>>,,,)))))): 1 CaucaGUCUGugCUUAGcaCACUGAUGAGuCccUGAaAuAgGaCGAAACugauG 54 CA :AGUCUG:GCU+AGC:CACUGAUGAG:C: UGA AUA:G:CGAAACU: UG 283 CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184726,sp|AJ005299.1|PLMAJ5299 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds1 ----isReversed: 0 ----hitSequence: AAGAGUCUGUGCUAAGCACACUGAUGAAUCUCUGAAAUGA