Params: ./cmzasha --no-stderr --filter 40 19.5 Rfam/Rfam-4.0/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00008_Rfam4.0_forwardinf_hmmtype0_Ecoli_0MM.bin hmm data/TryAllCm_5.0/RF00008_Rfam4.0_forwardinf_hmmtype1_Ecoli_0MM.bin Build: release Host: xmen.cs.washington.edu pid: 23111 ----hmm-from-cmFileName: Rfam/Rfam-4.0/cm/RF00008.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/Rfam-4.0/cm/RF00008.cm 1 1 100000 0 cfsqp 0 1 Build: release Host: xmen.cs.washington.edu ;Params: ./cmzasha --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/Rfam-4.0/cm/RF00008.cm 1 1 100000 0 cfsqp 0 1 Build: release Host: xmen.cs.washington.edu ----hmm-from-cmFileName: Rfam/Rfam-4.0/cm/RF00008.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/Rfam-4.0/cm/RF00008.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: xmen.cs.washington.edu ;Params: ./cmzasha --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/Rfam-4.0/cm/RF00008.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: xmen.cs.washington.edu ----cmFile: Rfam/Rfam-4.0/cm/RF00008.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #81281,sp|AJ249781.1|YLI249781 Yarrowia lipolytica nuam gene for NUAM protein ----isReversed: 0 ----hitSequence: AACUGAUGAACUCCAAAGGGUGAACCAUAGAC hit 0 : 4223 4254 (fwd) 19.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGA:::CCA +AG:::GAA:C:+ :G:C 4223 AACUGAUGAACUCCA--AAGGGUGAACCAU-AGAC 4254 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #4923,sp|AJ427941.1|ABI427941 Adalia bipunctata microsatellite DNA, clone Ab18 ----isReversed: 0 ----hitSequence: CCCUGAAGAAGCCGAAGAAAGGUCGAAACGUCGGC hit 1 : 27 61 (fwd) 20.75 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 + CUGA GA G C++A+A+++G CGA CG+ CG C 27 CCCUGAAGAaGCCGAAGAAAGGUCGAAACGU-CGGC 61 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5472,sp|AC007752.6|AC007752 Drosophila melanogaster, chromosome 3R, region 87C-87D, BAC clone BACR07J06, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCCGAGCGCCAAUAAGCGCCAAACUUUGUC hit 2 : 171166 171199 (fwd) 20.45 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG :G G:+CCAA +AG+:C A:AC:+ :GUC 171166 GGCUGCCGAGCGCCAAUAAGCGCCAAACUU-UGUC 171199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5640,sp|AC008318.7|AC008318 Drosophila melanogaster, chromosome 2L, region 21A-21A, BAC clone BACR09J20, complete sequence. ----isReversed: 0 ----hitSequence: AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC hit 3 : 104179 104213 (fwd) 21.18 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::A :C+: +A+:+G: G::AC++ +GUC 104179 AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC 104213 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5877,sp|AC010211.9|AC010211 Drosophila melanogaster, chromosome 3R, region 83D-83D, BAC clone BACR26C09, complete sequence. ----isReversed: 1 ----hitSequence: CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC hit 4 : 46507 46473 (rev) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GA::::: AAU:::::GA: ::C+:: C 131351 CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC 131385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5946,sp|AC011065.6|AC011065 Drosophila melanogaster, chromosome 2L, region 33B-33B, BAC clone BACR37P12, complete sequence. ----isReversed: 0 ----hitSequence: AAGUGACGAGGCGCAAAAACGCAGAAAAUUUUC hit 5 : 114600 114632 (fwd) 19.99 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AA UGA:GA :C+CAAA+A+G: GA:A:: ::UC 114600 AAGUGACGAGGCGCAAAAACGCAGAAAAU--UUUC 114632 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6012,sp|AC016445.4|AC016445 Drosophila melanogaster, chromosome 3R, region 83D-83F, BAC clone BACR19H03, complete sequence. ----isReversed: 1 ----hitSequence: CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC hit 6 : 119977 119943 (rev) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GA::::: AAU:::::GA: ::C+:: C 37165 CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC 37199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6018,sp|AC018479.2|AC018479 Drosophila melanogaster, chromosome 3R, region 87D-87D, BAC clone BACR09O13, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCCGAGCGCCAAUAAGCGCCAAACUUUGUC hit 7 : 22118 22151 (fwd) 20.45 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG :G G:+CCAA +AG+:C A:AC:+ :GUC 22118 GGCUGCCGAGCGCCAAUAAGCGCCAAACUU-UGUC 22151 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6087,sp|AC023724.5|AC023724 Drosophila melanogaster X BAC RP98-14B2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AACUGAGUGAUGUUUAUAAUAAAACGAAACUGGAGAC hit 8 : 152181 152145 (rev) 20.21 bits ::::::.<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGA.uGA.GucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA UGA GU::+ AAU+::ACGAA+C ++ G+C 29794 AACUGAgUGAuGUUUAUAAUAAAACGAAACUGGAGAC 29830 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6097,sp|AC023743.4|AC023743 Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AACUGAGUGAUGUUUAUAAUAAAACGAAACUGGAGAC hit 9 : 184670 184706 (fwd) 20.21 bits ::::::.<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGA.uGA.GucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA UGA GU::+ AAU+::ACGAA+C ++ G+C 184670 AACUGAgUGAuGUUUAUAAUAAAACGAAACUGGAGAC 184706 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6310,sp|AC084161.2|AC084161 Caenorhabditis elegans cosmid Y92H12A, complete sequence. ----isReversed: 1 ----hitSequence: AUCUGACAAGUUCUUGAAGAGAACGGAAUGUUCGUC hit 10 : 85181 85146 (rev) 23.64 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A CUGA: AGU:C: +A :G:ACG :A G+UC UC 6640 AUCUGACAAGUUCUUGAaGAGAACGGAAUGUUCGUC 6675 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6399,sp|AC084514.1|AC084514 Caenorhabditis briggsae cosmid G17K04, complete sequence. ----isReversed: 1 ----hitSequence: UACUGACGAUUCGAGAUGAAGAAGAAACAGUUGUG hit 11 : 10752 10718 (rev) 20.65 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 ACUGA:GA U:C:A+A +:G:A GA:AC:+U:GU 15588 UACUGACGA-UUCGAGAugAAGAA-GAAACAGUUGUG 15622 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6567,sp|AC084682.1|AC084682 Caenorhabditis briggsae cosmid G47O06, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGAUGUUUUGCAAAUGCAAGCAAACAUGAAGUC hit 12 : 17062 17027 (rev) 22.63 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 A+CUGAUG::U:+:AAAU:+:A::AAAC:++ :GUC 24408 AGCUGAUGUUUUGCAAAUGCAAGCAAACAUGaAGUC 24443 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6759,sp|AC098576.7|AC098576 Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGACGUCUGUGAUGAGGAUGAAACCGUGUUC hit 13 : 148416 148452 (fwd) 20.87 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUGA UC:: +A ::GA GAAA: +U :UC 148416 AACUGAUGAcGUCUGUGAuGAGGAUGAAACCGUGUUC 148452 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6825,sp|AC104147.4|AC104147 Drosophila melanogaster X BAC RP98-33I18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGACGUCUGUGAUGAGGAUGAAACCGUGUUC hit 14 : 9785 9821 (fwd) 20.87 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUGA UC:: +A ::GA GAAA: +U :UC 9785 AACUGAUGAcGUCUGUGAuGAGGAUGAAACCGUGUUC 9821 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6879,sp|AC108480.3|AC108480 Drosophila melanogaster X BAC RP98-2A13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AACCGAUGAGUUCCAAGUUGGACGAAUCGUGUGCC hit 15 : 82675 82641 (rev) 23.14 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AAC GAUGAGU:C AA U G:ACGAA C:++:G C 93322 AACCGAUGAGUUCCAAGUUGGACGAAUCGUGUGCC 93356 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6990,sp|U13190.1|AC13190 Angiostrongylus cantonensis clone G-2 retrotransposable element AcT-1. ----isReversed: 0 ----hitSequence: CUCUGAUGAAGACGAAGACGUCGAAACGUUAGCC hit 16 : 1629 1662 (fwd) 20.02 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA G:C++A ++G:CGAA C:+U:G C 1629 CUCUGAUGAaGACGAA--GACGUCGAAACGUUAGCC 1662 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7342,sp|AE001274.1|AE001274 Leishmania major chromosome 1, complete sequence. ----isReversed: 0 ----hitSequence: UCCUGAUGAGCACGACCGUGCGAAGCGGCGAC hit 17 : 249264 249295 (fwd) 19.55 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG::C A G::CGAA:CG+ CG:C 249264 UCCUGAUGAGCACGA--CCGUGCGAAGCGG-CGAC 249295 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7438,sp|AE003422.2|AE003422 Drosophila melanogaster chromosome X section 6 of 74 of the complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGACGUCUGUGAUGAGGAUGAAACCGUGUUC hit 18 : 52075 52111 (fwd) 20.87 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUGA UC:: +A ::GA GAAA: +U :UC 52075 AACUGAUGAcGUCUGUGAuGAGGAUGAAACCGUGUUC 52111 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7443,sp|AE003427.2|AE003427 Drosophila melanogaster chromosome X section 11 of 74 of the complete sequence. ----isReversed: 0 ----hitSequence: AACCGAUGAGUUCCAAGUUGGACGAAUCGUGUGCC hit 19 : 121740 121774 (fwd) 23.14 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AAC GAUGAGU:C AA U G:ACGAA C:++:G C 121740 AACCGAUGAGUUCCAAGUUGGACGAAUCGUGUGCC 121774 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7461,sp|AE003445.2|AE003445 Drosophila melanogaster chromosome X section 29 of 74 of the complete sequence. ----isReversed: 0 ----hitSequence: AACUGAGUGAUGUUUAUAAUAAAACGAAACUGGAGAC hit 20 : 2142 2178 (fwd) 20.21 bits ::::::.<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGA.uGA.GucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA UGA GU::+ AAU+::ACGAA+C ++ G+C 2142 AACUGAgUGAuGUUUAUAAUAAAACGAAACUGGAGAC 2178 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7606,sp|AE003590.3|AE003590 Drosophila melanogaster chromosome 2L section 1 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC hit 21 : 113537 113571 (fwd) 21.18 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::A :C+: +A+:+G: G::AC++ +GUC 113537 AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC 113571 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7616,sp|AE003600.3|AE003600 Drosophila melanogaster chromosome 3R, section 8 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC hit 22 : 228572 228606 (fwd) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GA::::: AAU:::::GA: ::C+:: C 228572 CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC 228606 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7650,sp|AE003634.2|AE003634 Drosophila melanogaster chromosome 2L section 43 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: AAGUGACGAGGCGCAAAAACGCAGAAAAUUUUC hit 23 : 149369 149401 (fwd) 19.99 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AA UGA:GA :C+CAAA+A+G: GA:A:: ::UC 149369 AAGUGACGAGGCGCAAAAACGCAGAAAAU--UUUC 149401 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7713,sp|AE003697.4|AE003697 Drosophila melanogaster chromosome 3R, section 35 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCCGAGCGCCAAUAAGCGCCAAACUUUGUC hit 24 : 33807 33840 (fwd) 20.45 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG :G G:+CCAA +AG+:C A:AC:+ :GUC 33807 GGCUGCCGAGCGCCAAUAAGCGCCAAACUU-UGUC 33840 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7873,sp|AE014825.1|AE014825 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGAAGAUGGUGAUACAUCUGAAACUUUUGUA hit 25 : 219957 219993 (fwd) 21.81 bits ::::::<<<.<<<<<____>>>>>.>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaC.GAaACgcucGUC 35 AACUGAUGA G::+: +AU:+::C GAAAC:+U:GU 219957 AACUGAUGAaGAUGGUGAUACAUCuGAAACUUUUGUA 219993 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10954,sp|AF036389.1|AF036389 Schistosoma haematobium clone Sh1 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAACAGGACGAAACGCGCGUC hit 26 : 124 158 (fwd) 42.62 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAA AGGACGA:ACGC+CGUC 124 AGCUGACGAGUCCCAAACAGGACGAAACGCGCGUC 158 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10955,sp|AF036390.1|AF036390 Schistosoma haematobium clone Sh2 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACGAGUGCCCAAUAGGAGGAAACGCGCGUC hit 27 : 122 156 (fwd) 33.27 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GA U CC AAUAG A GA:ACGC+CGUC 122 AACUGACGAGUGCCCAAUAGGAGGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10956,sp|AF036391.1|AF036391 Schistosoma haematobium clone Sh4 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUC hit 28 : 125 159 (fwd) 38.16 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GA U CCAAAUAG A GA:ACGC+CGUC 125 AACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10957,sp|AF036392.1|AF036392 Schistosoma haematobium clone Sh5 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACGAGCGCCAAAUAGGAGGAAACGCGCGUC hit 29 : 125 159 (fwd) 33.67 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GA CCAAAUAG GA:ACGC+CGUC 125 AACUGACGAGCGCCAAAUAGGAGGAAACGCGCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10958,sp|AF036393.1|AF036393 Schistosoma haematobium clone Sh6 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAACAGGACGAAACGAGAGUC hit 30 : 123 157 (fwd) 36.57 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAA AGGACGA:AC: +:GUC 123 AGCUGACGAGUCCCAAACAGGACGAAACGAGAGUC 157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10959,sp|AF036394.1|AF036394 Schistosoma haematobium clone Sh7 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGUGUCCCAAACAGCACGAAACGCGCGUC hit 31 : 122 156 (fwd) 33.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:G:GU CCAAA AG AC:A:ACGC+CGUC 122 AGCUGACGUGUCCCAAACAGCACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10960,sp|AF036395.1|AF036395 Schistosoma haematobium clone Sh8 satellite sequence. ----isReversed: 0 ----hitSequence: GGCUGACGAGUCCCAAACAGGACGAAACGCGCGUC hit 32 : 123 157 (fwd) 41.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA:GAGUCCCAAA AGGACGA:ACGC+CGUC 123 GGCUGACGAGUCCCAAACAGGACGAAACGCGCGUC 157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10961,sp|AF036396.1|AF036396 Schistosoma haematobium clone Sh9 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUC hit 33 : 125 159 (fwd) 38.16 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GA U CCAAAUAG A GA:ACGC+CGUC 125 AACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10962,sp|AF036397.1|AF036397 Schistosoma haematobium clone Sh10 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAACAGCACGAAACGCGCGUC hit 34 : 123 157 (fwd) 38.24 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CCAAA AG ACGA:ACGC+CGUC 123 AGCUGACGAGUCCCAAACAGCACGAAACGCGCGUC 157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10963,sp|AF036398.1|AF036398 Schistosoma haematobium clone Sh12 satellite sequence. ----isReversed: 0 ----hitSequence: UUCUGACGAGUUUCAAAUAGGACGAAACGCGUGUC hit 35 : 62 96 (fwd) 32.36 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA:GAGU::CAAAUA::ACGA:AC:C+:GUC 62 UUCUGACGAGUUUCAAAUAGGACGAAACGCGUGUC 96 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10964,sp|AF036399.1|AF036399 Schistosomatium douthitti clone Sd1 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUC hit 36 : 127 161 (fwd) 39.21 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CCAAAUAG ACGA:A:GC+C:UC 127 AGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10965,sp|AF036400.1|AF036400 Schistosomatium douthitti clone Sd2 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUGCCAAAUAGGACGAAAUGUGCAUC hit 37 : 127 161 (fwd) 38.70 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CCAAAUAG ACGA:A:G++C:UC 127 AGCUGACGAGUGCCAAAUAGGACGAAAUGUGCAUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10966,sp|AF036401.1|AF036401 Schistosomatium douthitti clone Sd3 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAAUGCGCAUC hit 38 : 127 161 (fwd) 42.42 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:A:GC+C:UC 127 AGCUGACGAGUCCCAAAUAGGACGAAAUGCGCAUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10967,sp|AF036402.1|AF036402 Schistosomatium douthitti clone Sd4 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUGCCAAAUACGACGAAAUGCGCAUC hit 39 : 127 161 (fwd) 34.34 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CAAAUA ACGA:A:GC+C:UC 127 AGCUGACGAGUGCCAAAUACGACGAAAUGCGCAUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10969,sp|AF036404.1|AF036404 Schistosomatium douthitti clone Sd6 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUC hit 40 : 126 160 (fwd) 39.21 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CCAAAUAG ACGA:A:GC+C:UC 126 AGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUC 160 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11073,sp|AF036695.2|AF036695 Caenorhabditis elegans cosmid F16B3, complete sequence. ----isReversed: 1 ----hitSequence: CCCUGAUGACUUCUAUAGUACGAAAUCCGAUC hit 41 : 23459 23428 (rev) 22.40 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA U C:A U:G A GAAA:+C+ :UC 13360 CCCUGAUGACUUCUA--UAGUACGAAAUCCG-AUC 13391 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11099,sp|AF036739.1|AF036739 Schistosoma mansoni clone Sm1 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC hit 42 : 122 156 (fwd) 45.25 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11100,sp|AF036740.1|AF036740 Schistosoma mansoni clone Sm3 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUCACGAGUCCCAAAUAGGACGAAACGCGUC hit 43 : 121 153 (fwd) 35.38 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CU A:GAGUCCCAAAUAGGACGA:ACG CGUC 121 AGCUCACGAGUCCCAAAUAGGACGAAACG--CGUC 153 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11101,sp|AF036741.1|AF036741 Schistosoma mansoni clone Sm4 satellite sequence. ----isReversed: 0 ----hitSequence: AGCCGACGAGUCCCAAAUAAAACGAAACGCGCGUC hit 44 : 122 156 (fwd) 33.95 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+C GA:GAGU CAAAUA ACGA:ACGC+CGUC 122 AGCCGACGAGUCCCAAAUAAAACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11102,sp|AF036742.1|AF036742 Schistosoma mansoni clone Sm5 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC hit 45 : 122 156 (fwd) 45.25 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11103,sp|AF036743.1|AF036743 Schistosoma mansoni clone Sm6 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAGUGACGCGCGUC hit 46 : 122 159 (fwd) 34.83 bits ::::::<<<<<<<<____>>>>>>>>...<<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAa...ACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA: ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACGAAgugACGCGCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11104,sp|AF036744.1|AF036744 Schistosoma mansoni clone Sm7 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC hit 47 : 122 156 (fwd) 45.25 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11105,sp|AF036745.1|AF036745 Schistosoma mansoni clone Sm8 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACCAGUCGGAAAUAGGACGAAACGCGCGUC hit 48 : 123 157 (fwd) 36.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::AGUC+:AAAU:+GACG::ACGC+CGUC 123 AACUGACCAGUCGGAAAUAGGACGAAACGCGCGUC 157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11106,sp|AF036746.1|AF036746 Schistosoma mansoni clone Sm9 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACCAGUCGGAAAUAGGACGAAACGCGCGUC hit 49 : 117 151 (fwd) 36.19 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA::AGUC+:AAAU:+GACG::ACGC+CGUC 117 AGCUGACCAGUCGGAAAUAGGACGAAACGCGCGUC 151 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11107,sp|AF036747.1|AF036747 Schistosoma mansoni clone Sm10 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGCGAAACGCGCGUC hit 50 : 121 154 (fwd) 33.90 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGG CGA:ACGC+CGUC 121 AGCUGACGAGUCCCAAAUAGG-CGAAACGCGCGUC 154 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11108,sp|AF036748.1|AF036748 Schistosoma mansoni clone Sm12 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCUAAAUAGGGUGAAACGCGCGUC hit 51 : 124 158 (fwd) 35.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GA CC:AAAU:GG GA:ACGC+CGUC 124 AGCUGACGAGUCCUAAAUAGGGUGAAACGCGCGUC 158 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11109,sp|AF036749.1|AF036749 Schistosoma mansoni clone Sm13 satellite sequence. ----isReversed: 0 ----hitSequence: AACAGACGAGUCCCAAAUAGGACGAAGUGACGCGCGUC hit 52 : 124 161 (fwd) 30.26 bits ::::::<<<<<<<<____>>>>>>>>...<<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAa...ACgcucGUC 35 AAC GA:GAGUCCCAAAUAGGACGA: ACGC+CGUC 124 AACAGACGAGUCCCAAAUAGGACGAAgugACGCGCGUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11110,sp|AF036750.1|AF036750 Schistosoma mansoni clone Sm14 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAAUCGCGUC hit 53 : 123 156 (fwd) 35.19 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:A :+ : UC 123 AGCUGACGAGUCCCAAAUAGGACGAAAUCG-CGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11111,sp|AF036751.1|AF036751 Schistosoma mansoni clone Sm15 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAACGCACUUC hit 54 : 122 155 (fwd) 33.22 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA: :GC C:UC 122 AGCUGACGAGUCCCAAAUAGGACGAA-CGCACUUC 155 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11112,sp|AF036752.1|AF036752 Schistosoma mansoni clone Sm16 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACUUGACGCGCGUC hit 55 : 122 156 (fwd) 32.49 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA: :GUCCCAAAUAGGAC: :ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACUUGACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11113,sp|AF036753.1|AF036753 Schistosoma mansoni clone Sm17 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACCGUCGGAAAUAGGACGAAACGCGCGUC hit 56 : 122 155 (fwd) 24.19 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:: GUC+:AAAU:+GACG::ACGC+CGUC 122 AGCUGACC-GUCGGAAAUAGGACGAAACGCGCGUC 155 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11114,sp|AF036754.1|AF036754 Schistosoma mansoni clone Sm18 satellite sequence. ----isReversed: 0 ----hitSequence: AGUUGACGAGUCCCAAAUUGGACGAAACGCGCGUC hit 57 : 95 129 (fwd) 35.94 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+ UGA:GAGUCC AAAU GGACGA:ACGC+CGUC 95 AGUUGACGAGUCCCAAAUUGGACGAAACGCGCGUC 129 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11115,sp|AF036755.1|AF036755 Schistosoma mansoni clone Sm19 satellite sequence. ----isReversed: 0 ----hitSequence: NGCUGACGNGUCCCAAAUAGGACGGAAGGCGCGUC hit 58 : 122 156 (fwd) 31.82 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA: GUCCCAAAUAGGAC :A GC+C UC 122 NGCUGACGNGUCCCAAAUAGGACGGAAGGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11116,sp|AF036756.1|AF036756 Schistosoma mansoni clone Sm20 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAGUAGGACGAAACGCGCGUC hit 59 : 122 156 (fwd) 42.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAA UAGGACGA:ACGC+CGUC 122 AGCUGACGAGUCCCAAGUAGGACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #12834,sp|AF061797.1|AF061797 Eptatretus stouti 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. ----isReversed: 0 ----hitSequence: GACUGACGAGAGGCAUUGGGGCCGAAACGGCUUC hit 60 : 2399 2432 (fwd) 21.11 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGA:GAG +:A :+ CGA:A:G+ C:UC 2399 GACUGACGAGAGGCAUUGGGGCCGAAACGG-CUUC 2432 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16307,sp|AF109181.1|AF109181 Schistosoma mansoni SPO-1 protein (SPO-1) gene, complete cds. ----isReversed: 1 ----hitSequence: UACUGAAGAGUUCCACAAUAGGACGAAACGGCGA hit 61 : 630 597 (rev) 21.27 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 ACUGA GAGU:CCA A UAG:ACGA +CG+ CG+ 3227 UACUGAAGAGUUCCACAaUAGGACGAAACGG-CGA- 3260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #25905,sp|AF213692.1|AF213692 Schistosoma japonicum Sj-alpha-1 retroposon-like sequence. ----isReversed: 0 ----hitSequence: AGCCGAUGAGUUCCAAACAGGACUAAACGCGCUUC hit 62 : 357 391 (fwd) 30.50 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+C GAUG:GU:CCAAA AG:AC:AAA:GC+C:UC 357 AGCCGAUGAGUUCCAAACAGGACUAAACGCGCUUC 391 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #25906,sp|AF213693.1|AF213693 Schistosoma japonicum Sj-alpha-2 retroposon-like sequence. ----isReversed: 0 ----hitSequence: AACCGAUGAGUCCCAAAUAGAACGAAACCUGCGUC hit 63 : 188 222 (fwd) 36.71 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AAC GAUGAGU CCAAAUAG ACGAAAC:++:GUC 188 AACCGAUGAGUCCCAAAUAGAACGAAACCUGCGUC 222 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #44463,sp|AF419171.1|AF419171 Caenorhabditis elegans protein tyrosine kinase (src-1) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AUCUGACAAGUUCUUGAAGAGAACGGAAUGUUCGUC hit 64 : 758 723 (rev) 23.64 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A CUGA: AGU:C: +A :G:ACG :A G+UC UC 1858 AUCUGACAAGUUCUUGAaGAGAACGGAAUGUUCGUC 1893 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #1412,sp|AF475094.1|AF475094 Caenorhabditis elegans SRC-1 (src-1) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AUCUGACAAGUUCUUGAAGAGAACGGAAUGUUCGUC hit 65 : 661 626 (rev) 23.64 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A CUGA: AGU:C: +A :G:ACG :A G+UC UC 942 AUCUGACAAGUUCUUGAaGAGAACGGAAUGUUCGUC 977 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #16801,sp|AY028787.1|AY028787 Schistosoma mansoni FTZ-F1 nuclear receptor-like protein (ftz-f1) gene, complete cds, alternatively spliced. ----isReversed: 0 ----hitSequence: UGCUGACGAGUAUUAGCUAGCACGAAACUUACGUC hit 66 : 14875 14909 (fwd) 24.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA:GAGU ::A+ U:: ACGA:AC + GUC 14875 UGCUGACGAGUAUUAGCUAGCACGAAACUUACGUC 14909 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #16801,sp|AY028787.1|AY028787 Schistosoma mansoni FTZ-F1 nuclear receptor-like protein (ftz-f1) gene, complete cds, alternatively spliced. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAACGGUACGAAACUGGCGUC hit 67 : 23625 23659 (fwd) 32.16 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU C:AAA :G ACGA:AC ++ GUC 23625 AGCUGACGAGUCCCAAACGGUACGAAACUGGCGUC 23659 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #17507,sp|AY043292.1|AY043292 Tribolium castaneum strain GA-2 HOMC gene cluster, partial sequence. ----isReversed: 1 ----hitSequence: GCCUGAUGAUGAUUUAAAUAAAAUCGAAACGUC hit 68 : 89814 89782 (rev) 19.78 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 CUGAUGA G::::AAA +::::CGAAAC GUC 20810 GCCUGAUGAuGAUUUAAAuAAAAUCGAAAC----GUC 20842 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #17508,sp|AY043293.1|AY043293 Tribolium castaneum strain GA-1 HOMC gene cluster, partial sequence. ----isReversed: 0 ----hitSequence: GUCUGAAGAUGCUUUAAAUAAAGCGAAACCGGUUA hit 69 : 11932 11966 (fwd) 20.85 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 CUGA GA G::::AAAU::::CGA A:+++ :U 11932 GUCUGAAGAuGCUUUAAAUAAAGCGAAACCGG-UUA 11966 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #18499,sp|AY051518.1|AY051518 Drosophila melanogaster GH17311 full length cDNA. ----isReversed: 0 ----hitSequence: AACUGAGUGAUGUUUAUAAUAAAACGAAACUGGAGAC hit 70 : 1797 1833 (fwd) 20.21 bits ::::::.<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGA.uGA.GucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA UGA GU::+ AAU+::ACGAA+C ++ G+C 1797 AACUGAgUGAuGUUUAUAAUAAAACGAAACUGGAGAC 1833 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #18899,sp|AY051918.1|AY051918 Drosophila melanogaster LD40460 full length cDNA. ----isReversed: 0 ----hitSequence: AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC hit 71 : 1394 1428 (fwd) 21.18 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::A :C+: +A+:+G: G::AC++ +GUC 1394 AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC 1428 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #33135,sp|AY176645.2|AY176645 Cherax quadricarinatus cellulase GHF9 (EG) gene, EG-A allele, partial cds. ----isReversed: 0 ----hitSequence: GACUGAUGAAGCCACUGUGUGGCGAAACGUUUCCUC hit 72 : 3919 3954 (fwd) 20.21 bits ::::::<<<.<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcu.cGUC 35 ACUGAUGA G:C:: + U::G:CGAAA G+U C UC 3919 GACUGAUGAaGCCACUG-UGUGGCGAAACGUUuCCUC 3954 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #778,sp|AL021107.1|DMC30B7 Drosophila melanogaster cosmid clone 30B7 ----isReversed: 0 ----hitSequence: AACUGAUGACGUCUGUGAUGAGGAUGAAACCGUGUUC hit 73 : 25899 25935 (fwd) 20.87 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUGA UC:: +A ::GA GAAA: +U :UC 25899 AACUGAUGAcGUCUGUGAuGAGGAUGAAACCGUGUUC 25935 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5722,sp|Z69699.1|DSBDOPCR2 D.schiavazzii satellite DNA (clone bdopcr2) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 74 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5723,sp|Z69698.1|DSBDOPCR3 D.schiavazzii satellite DNA (clone bdopcr3) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 75 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5725,sp|Z69701.1|DSBDOPCR5 D.schiavazzii satellite DNA (clone bdopcr5) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 76 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5726,sp|Z69702.1|DSBDOPCR6 D.schiavazzii satellite DNA (clone bdopcr6) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 77 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5727,sp|Z69703.1|DSBDOPCR7 D.schiavazzii satellite DNA (clone bdopcr7) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 78 : 347 381 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 347 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 381 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5759,sp|Z69691.1|DSCPSPCR1 D.schiavazzii satellite DNA (clone cpspcr1) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 79 : 346 380 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5760,sp|Z69692.1|DSCPSPCR2 D.schiavazzii satellite DNA (clone cpspcr2) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 80 : 347 381 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 347 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 381 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5762,sp|Z69694.1|DSCPSPCR4 D.schiavazzii satellite DNA (clone cpspcr4) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 81 : 346 380 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5763,sp|Z69695.1|DSCPSPCR5 D.schiavazzii satellite DNA (clone cpspcr5) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 82 : 349 383 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 349 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 383 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5764,sp|Z69696.1|DSCPSPCR6 D.schiavazzii satellite DNA (clone cpspcr6) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 83 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6267,sp|Z69685.1|DSVETPCR1 D.schiavazzii satellite DNA (clone vetpcr1) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 84 : 346 380 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6268,sp|Z69686.1|DSVETPCR2 D.schiavazzii satellite DNA (clone vetpcr2) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGAC hit 85 : 346 380 (fwd) 25.97 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ :+U: +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6269,sp|Z69688.1|DSVETPCR3 D.schiavazzii satellite DNA (clone vetpcr3) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 86 : 269 303 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 269 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 303 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6271,sp|Z69690.1|DSVETPCR5 D.schiavazzii satellite DNA (clone vetpcr5) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 87 : 346 380 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6276,sp|Z69687.1|DSVTPCR2B D.schiavazzii satellite DNA (clone vetpcr2) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGAC hit 88 : 346 380 (fwd) 25.97 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ :+U: +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12345,sp|AJ271365.2|MED271365 Mytilus edulis gene for endo-1,4-mannanase, exons 1-6 ----isReversed: 1 ----hitSequence: CACUGAUGAGUUUUUUGUAGACGAAACGCGUGUC hit 89 : 4911 4878 (rev) 23.00 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGU::: :::ACGAAAC:C+:GUC 299 CACUGAUGAGUUUUUU-GUAGACGAAACGCGUGUC 332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12346,sp|AJ308548.1|MED308548 Mytilus edulis eg gene for endo-1,4-beta-D-glucanase, exons 1-3 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUUUUGUAGACGGAACGCGCGUC hit 90 : 3159 3192 (fwd) 24.40 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAU AGUC:: ::GACG AACGC+CGUC 3159 CACUGAUGAGUCUUUU-GUAGACGGAACGCGCGUC 3192 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19925,sp|S80278.1|S80278 {tandem repetitive sequence} [Opisthorchis viverrini, Genomic, 333 nt]. ----isReversed: 0 ----hitSequence: ACCUGAUAGCCCCGAGAAGGGCGAAACCGGUC hit 91 : 131 162 (fwd) 19.56 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAU AG:CCC A +AGG:CGAAAC++ GUC 131 ACCUGAU-AGCCCCGAGAAGGGCGAAACCG--GUC 162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20854,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: UGCUGAGGAGUCCCACAAUAGGACGAAACGACCGUC hit 92 : 747 782 (fwd) 27.15 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GAGUCCCA A UAGGACGA:ACG CGUC 747 UGCUGAGGAGUCCCACAaUAGGACGAAACGACCGUC 782 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20854,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: AGUUGAUGAGUCCCAGAGAAGGACGAAACGUGCAUC hit 93 : 1483 1518 (fwd) 32.36 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+ UGAUGAGUCCCA+A +AGGACGAAA G++C UC 1483 AGUUGAUGAGUCCCAGAgAAGGACGAAACGUGCAUC 1518 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20854,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: UGCUGAGGAGUCCCAUAAUAGGACGAAACGGCCGUC hit 94 : 2151 2186 (fwd) 33.50 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GAGUCCCA A UAGGACGA:ACG+ CGUC 2151 UGCUGAGGAGUCCCAUAaUAGGACGAAACGGCCGUC 2186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20855,sp|D87493.1|SMD493 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: UUCUGAAGAGUCCCAUGCUAGGACGAAACAGCCUUC hit 95 : 3568 3603 (fwd) 24.92 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 CUGA GAGUCCCA UAGGACGA A::+ ::UC 3568 UUCUGAAGAGUCCCAUGcUAGGACGAAACAGCCUUC 3603 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20889,sp|L23117.1|SMGLUSTRB Schistosoma mansoni glutathione S-transferase gene, protein bind region. ----isReversed: 0 ----hitSequence: UGCUGAGGAGUCCCACAAUAGGGCGAUACGGACGUC hit 96 : 1028 1063 (fwd) 26.71 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GAG CCCA A UAGG CGA:ACG+ CGUC 1028 UGCUGAGGAGUCCCACAaUAGGGCGAUACGGACGUC 1063 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20895,sp|M98271.1|SMGSTM Schistosoma mansoni 28 kDa glutathione S-transferase (GST) gene, complete cds. ----isReversed: 0 ----hitSequence: UGCUGAGGAGUCCCACAAUAGGGCGAUACGGACGUC hit 97 : 12 47 (fwd) 26.71 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GAG CCCA A UAGG CGA:ACG+ CGUC 12 UGCUGAGGAGUCCCACAaUAGGGCGAUACGGACGUC 47 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20942,sp|L07513.1|SMMTEGANT Schistosoma mansoni major tegumental antigen SM15 (GSM70) gene, complete cds. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCGAAUAGGAGGAAGUGCUC hit 98 : 250 281 (fwd) 22.07 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GA UCCC AAUAGGA GA: G++C UC 250 AGCUGACGAGUCCCGAAUAGGAGGAA--GUGC-UC 281 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20942,sp|L07513.1|SMMTEGANT Schistosoma mansoni major tegumental antigen SM15 (GSM70) gene, complete cds. ----isReversed: 1 ----hitSequence: AAAUGACGAGUCCUAAAUGGAACUAAACACAUGUG hit 99 : 80 46 (rev) 20.85 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AA UGA:G:GU C:AAAU:G AC:A:AC:C :GU 4621 AAAUGACGAGUCCUAAAUGGAACUAAACACAUGUG 4655 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20962,sp|X15619.1|SMRED1 Schistosoma mansoni repetitive DNA element d-1 of SM(alpha) family ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUC hit 100 : 125 159 (fwd) 45.35 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGCUCGUC 125 AGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20964,sp|X15621.1|SMRED3 Schistosoma mansoni repetitive DNA element d-3 of SM(alpha) family ----isReversed: 0 ----hitSequence: CCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUC hit 101 : 104 138 (fwd) 19.71 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + UGA: AGUC:C AAUA:GACG :A G++C UC 104 CCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUC 138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20964,sp|X15621.1|SMRED3 Schistosoma mansoni repetitive DNA element d-3 of SM(alpha) family ----isReversed: 1 ----hitSequence: AGCUGACGAGUCCCAAAUAAGACGAACGCGCGUC hit 102 : 72 39 (rev) 32.04 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUC CAAAUA GACGA: CGC+CGUC 222 AGCUGACGAGUCCCAAAUAAGACGAA-CGCGCGUC 255 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20966,sp|X15618.1|SMRET2 Schistosoma mansoni repetitive DNA element t-2 of SM(alpha) family ----isReversed: 0 ----hitSequence: AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC hit 103 : 140 174 (fwd) 33.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::AGUC+ AAAU +GACG::ACGC+CGUC 140 AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC 174 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20976,sp|M27676.1|SMRSRLA S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC hit 104 : 137 171 (fwd) 45.25 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGC+CGUC 137 AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC 171 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20977,sp|M27677.1|SMRSRLB S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC hit 105 : 140 174 (fwd) 33.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::AGUC+ AAAU +GACG::ACGC+CGUC 140 AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC 174 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20978,sp|M27678.1|SMRSRLC S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUC hit 106 : 125 159 (fwd) 45.35 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGCUCGUC 125 AGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20980,sp|M27680.1|SMRSRLE S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: CCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUC hit 107 : 104 138 (fwd) 19.71 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + UGA: AGUC:C AAUA:GACG :A G++C UC 104 CCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUC 138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20980,sp|M27680.1|SMRSRLE S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 1 ----hitSequence: AGCUGACGAGUCCCAAAUAAGACGAACGCGCGUC hit 108 : 72 39 (rev) 32.04 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUC CAAAUA GACGA: CGC+CGUC 222 AGCUGACGAGUCCCAAAUAAGACGAA-CGCGCGUC 255 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20983,sp|M19148.1|SMSATA S.mansoni satellite DNA repeat. ----isReversed: 0 ----hitSequence: AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC hit 109 : 164 198 (fwd) 33.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::AGUC+ AAAU +GACG::ACGC+CGUC 164 AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC 198 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7057,sp|AC091297.3|AC091297 Sus scrofa clone RP44-52N13, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAAGUUCCCAGACAAGGGAUCAAACUCUUGUC hit 110 : 70983 70948 (rev) 20.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA G :UCC:A+A +:GGA: A AC:CU:GUC 71075 CACUGAAG-UUCCCAGAcaAGGGAUCAAACUCUUGUC 71110 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #11938,sp|AF109199.1|AF109199 Bos taurus chloride channel protein p64 mRNA, complete cds. ----isReversed: 0 ----hitSequence: UGCUGACGAUGUUUCAGAAGGAAACGAAUCGGCUUC hit 111 : 600 635 (fwd) 22.18 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GA GU:::A+A :::ACGA: :G+ C: C 600 UGCUGACGAuGUUUCAGAaGGAAACGAAUCGG-CUUC 635 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #30947,sp|AY187092.1|AY187092 Equus caballus membrane-associated transporter protein (MATP) gene, exon 1. ----isReversed: 0 ----hitSequence: UUCUGAGGAUUUUAAGAUAGGAUGAAAUUUUUAUC hit 112 : 1269 1303 (fwd) 21.20 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA:GA:U::+A+AU+::A:GA:A::+U::UC 1269 UUCUGAGGAUUUUAAGAUAGGAUGAAAUUUUUAUC 1303 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #35273,sp|L16547.1|BTCCP64A Bovine chlorine channel protein (p64) mRNA, complete cds. ----isReversed: 0 ----hitSequence: UGCUGACGAUGUUUCAGAAGGAAACGAAUCGGCUUC hit 113 : 707 742 (fwd) 22.18 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GA GU:::A+A :::ACGA: :G+ C: C 707 UGCUGACGAuGUUUCAGAaGGAAACGAAUCGG-CUUC 742 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #2828,sp|AB053218.1|AB053218 Mus musculus mRNA for N-acetylglucosaminyltransferase IVb, complete cds. ----isReversed: 0 ----hitSequence: GCCUGAAGCGCUCCAAGGAGCUAAACCUGGUG hit 114 : 180 211 (fwd) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA G:G::C:A +:G::C:A AC+++ GU 180 GCCUGAAGCGCUCCA--AGGAGCUAAACCUG-GUG 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #2829,sp|AB053219.1|AB053219 Mus musculus gene for N-acetylglucosaminyltrasnferase IVb, complete cds. ----isReversed: 0 ----hitSequence: GCCUGAAGCGCUCCAAGGAGCUAAACCUGGUG hit 115 : 5116 5147 (fwd) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA G:G::C:A +:G::C:A AC+++ GU 5116 GCCUGAAGCGCUCCA--AGGAGCUAAACCUG-GUG 5147 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4619,sp|AC019028.13|AC019028 Mus musculus, clone RP23-88A22, complete sequence. ----isReversed: 0 ----hitSequence: ACCUGAGGAGUUCCAAACUUAGAACAAAACUCUUC hit 116 : 188841 188875 (fwd) 21.16 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 A CUGA:G GU:CCAAA UAG:AC A:A: :UC 188841 ACCUGAGGAGUUCCAAAcuUAGAACAAAACU--CUUC 188875 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4644,sp|AC023248.20|AC023248 Mus musculus, clone RP23-124B2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCUGAGGACGACAGUGAGACUCAUGUC hit 117 : 166102 166137 (fwd) 20.11 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA:GA ::++ +A ++:: GA:AC:C :GUC 166102 AGCUGAGGAGCUGAGGAcGACAGUGAGACUCAUGUC 166137 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4978,sp|AC091522.23|AC091522 Mus musculus chromosome 10 clone rp23-199g2 strain C57BL/6J, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGAUUUUUAAAAAAAAAGAAUCACUUUA hit 118 : 35404 35371 (rev) 19.91 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGA:U:::AAA+:::A:GAA ::CU:: 179395 AACUGAUGAUUUUUAAAAAAAAAGAAUCACUUUA- 179428 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4981,sp|AC091533.27|AC091533 Mus musculus chromosome 11 clone rp23-30n4 strain C57BL/6J, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGAAGCGCUCCAAGGAGCUAAACCUGGUG hit 119 : 67715 67684 (rev) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA G:G::C:A +:G::C:A AC+++ GU 124914 GCCUGAAGCGCUCCA--AGGAGCUAAACCUG-GUG 124945 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5043,sp|AC096625.24|AC096625 Mus musculus clone rp23-388i7 map 1 strain C57BL/6J, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUGAAUCCGAGAGGAUGAAAUGCCAUC hit 120 : 143051 143020 (rev) 20.10 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG UGA:UCC:A :GGA:GAAA:GC C:UC 48365 GGCUGGUGAAUCCGA--GAGGAUGAAAUGC-CAUC 48396 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5199,sp|AC102255.10|AC102255 Mus musculus, clone RP24-182H11, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGGUGAGUUCUAACCAACGAAACACUUGUC hit 121 : 184048 184016 (rev) 20.08 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUG UGAGU: :A +: :ACGAAAC:CU:GUC 11228 GCCUGGUGAGUUCUA--ACCAACGAAACACUUGUC 11260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5400,sp|AC112149.4|AC112149 Mus musculus chromosome 10 clone RP23-186F18, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGUGGACAUAGAAAGCCCCAAACUGUUGUA hit 122 : 82548 82513 (rev) 19.86 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUG:G: C+ A ++G :C:AAAC:+U:GU 112837 AACUGAUGUGGACAUAGaAAGCCCCAAACUGUUGUA 112872 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5542,sp|AC116325.5|AC116325 Mus musculus chromosome 10 clone RP23-295K3, complete sequence. ----isReversed: 0 ----hitSequence: AACUGACCAAAUUGAUAAAUUGAAACUUUUUUC hit 123 : 182773 182805 (fwd) 20.21 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::A:::::A U:::::G::A::+U::UC 182773 AACUGACCAAAUUGA--UAAAUUGAAACUUUUUUC 182805 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5702,sp|AC119234.10|AC119234 Mus musculus, clone RP24-211P24, complete sequence. ----isReversed: 1 ----hitSequence: GACUGAUGAGUUUAAAAAAAAAAUCAAAACUGUUUC hit 124 : 32339 32304 (rev) 19.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 ACUGAUG G ::+AAA ++:: C AAA::+ ::UC 111494 GACUGAUGAGUUUAAAAaaAAAAUCAAAACUG-UUUC 111529 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5767,sp|AC121597.2|AC121597 Mus musculus chromosome 9 clone RP23-300D5, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAAGAGGUUCAAAGAAACAGAAAGGGAUAUC hit 125 : 137058 137092 (fwd) 20.50 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA GA :::CAAA A::: GA A :+ : UC 137058 AACUGAAGAGGUUCAAAGAAACAGAAAGGGAUAUC 137092 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5824,sp|AC121825.3|AC121825 Mus musculus chromosome 3 clone RP23-469H5, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGACUCCGGGAGAGGAAUAAUCAGGUUUC hit 126 : 44937 44971 (fwd) 19.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUG: UCC: +A :GGA :AA ::++:: C 44937 AACUGAUGACUCCGGGAGAGGAAUAAUCAGGUUUC 44971 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5870,sp|AC121881.3|AC121881 Mus musculus chromosome 8 clone RP24-134L8, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGAGCUCUAGAAUGACGUAAACUGUUGAC hit 127 : 165532 165566 (fwd) 21.29 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUG: :C:A+A+:G: :AA+C:+U:G+C 165532 AACUGAUGAGCUCUAGAAUGACGUAAACUGUUGAC 165566 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6321,sp|AC122887.2|AC122887 Mus musculus chromosome 10 clone RP23-91L6, complete sequence. ----isReversed: 0 ----hitSequence: GACUGAUGUUUCCCAAAGGAUAAAAUAUAAAUG hit 128 : 166402 166434 (fwd) 20.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUG::UCCCA +AGGA::AAA::+ ::U 166402 GACUGAUGUUUCCCA--AAGGAUAAAAUAUAAAUG 166434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6366,sp|AC123042.2|AC123042 Mus musculus chromosome 10 clone RP24-545O17, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGUCUUUCUUAUAGAAAGAAACUCUCUUC hit 129 : 33596 33630 (fwd) 20.63 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUG: U::C AUA::A :AAA: CU :UC 33596 AACUGAUGUCUUUCUUAUAGAAAGAAACUCUCUUC 33630 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6421,sp|AC123815.3|AC123815 Mus musculus chromosome 9 clone RP24-238O19, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGAAGAGUGAUAGAGGAAGACUAAACACUGGUC hit 130 : 36867 36902 (fwd) 20.72 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA G:GU ::A+A :: AC:A AC CU GUC 36867 AGCUGAAGAGUGAUAGAgGAAGACUAAACACUGGUC 36902 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6598,sp|AC124445.4|AC124445 Mus musculus chromosome 10 clone RP24-191B18, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGAAUUGGAUUGAAUGAACCUGUUGGC hit 131 : 57256 57288 (fwd) 20.16 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGA:U:+ A U +:A:GAA:C:+U:G:C 57256 AACUGAUGAAUUGGA--UUGAAUGAACCUGUUGGC 57288 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6623,sp|AC124485.3|AC124485 Mus musculus chromosome 8 clone RP23-450J12, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUCAACCCUAAAUUAGGGAGGAAGGCCCCUC hit 132 : 3383 3348 (rev) 23.61 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAU:A::CC:AAA U:GG::G:AA GC C UC 194872 AACUGAUCAACCCUAAAuUAGGGAGGAAGGCCCCUC 194907 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7252,sp|AC129211.3|AC129211 Mus musculus chromosome 8 clone RP24-348E18, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGAGCCCCAGGUUGAGUGAGACCCUUGUC hit 133 : 62716 62682 (rev) 19.93 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA GA : C A+ U G : GA AC CU GUC 104740 AACUGAUGAGCCCCAGGUUGAGUGAGACCCUUGUC 104774 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7361,sp|AC131711.3|AC131711 Mus musculus chromosome 6 clone RP23-192M18, complete sequence. ----isReversed: 0 ----hitSequence: GCCUGAAAAUUCUGAGAGAAGAAGAAAGUCUUCUC hit 134 : 83667 83701 (fwd) 19.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA A:UC::A+A ::GA:G A :CU: UC 83667 GCCUGAAAAUUCUGAGAGAAGAAGAAAGUCUUCUC 83701 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #18965,sp|AF320599.1|AF320599 Mus musculus C lectin-related protein B gene, exons 3, 4, 5, and partial cds. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 135 : 3076 3106 (fwd) 28.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 3076 CACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 3106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #18966,sp|AF320600.1|AF320600 Mus musculus NKR-P1F (Nkrp1f) gene, exons 2-6, and C lectin-related protein A gene, complete cds. ----isReversed: 0 ----hitSequence: UACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 136 : 23593 23623 (fwd) 27.82 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 23593 UACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 23623 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #18988,sp|AF321553.1|AF321553 Mus musculus osteoclast inhibitory lectin (Ocil) mRNA, complete cds. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 137 : 1002 1032 (fwd) 28.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 1002 CACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 1032 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24091,sp|AL596384.17|AL596384 Mouse DNA sequence from clone RP23-353J21 on chromosome 11 ----isReversed: 0 ----hitSequence: UGCUGAGGAGGCUCAGGAGAGCCGAUCCCUUUAGAC hit 138 : 109712 109747 (fwd) 19.63 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 +CUGA:GAG:C::A+ +::G:CGA::C++U +G:C 109712 UGCUGAGGAGGCUCAGGAGAGCCGAUCCCUUuAGAC 109747 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24130,sp|AL603889.5|AL603889 Mouse DNA sequence from clone RP23-407M20 on chromosome 11 ----isReversed: 0 ----hitSequence: AACUGAUGAGCUGCAAAUUCAAAGAGAAACCCUGUC hit 139 : 11144 11179 (fwd) 23.13 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 AACUGAUGA :: CAAA A :: GAAAC+CU GUC 11144 AACUGAUGAGCUGCAAAuuCAAAGAGAAACCCU-GUC 11179 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24383,sp|AL627187.13|AL627187 Mouse DNA sequence from clone RP23-319B15 on chromosome 11 ----isReversed: 0 ----hitSequence: GCCUGAAGCGCUCCAAGGAGCUAAACCUGGUG hit 140 : 187939 187970 (fwd) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA G:G::C:A +:G::C:A AC+++ GU 187939 GCCUGAAGCGCUCCA--AGGAGCUAAACCUG-GUG 187970 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26083,sp|AL773539.18|AL773539 Mouse DNA sequence from clone RP23-9F18 on chromosome 4 ----isReversed: 0 ----hitSequence: AGCUGAUGAGCUCCAAAAAGAGCGAAACCUGUUG hit 141 : 161575 161608 (fwd) 33.87 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGAG::CCAAA+AG::CGAAA:+++ :U 161575 AGCUGAUGAGCUCCAAAAAGAGCGAAACCUG-UUG 161608 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26162,sp|AL805958.8|AL805958 Mouse DNA sequence from clone RP23-179F9 on chromosome 2 ----isReversed: 1 ----hitSequence: CACUGAUGUGGUUGCUGGGAACCAAACUCUGGUC hit 142 : 58013 57980 (rev) 19.64 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUG: GU:+: :+:AC:AAAC CU GUC 140615 CACUGAUGUgGUUGCU--GGGAACCAAACUCUGGUC 140648 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26445,sp|AL833771.4|AL833771 Mouse DNA sequence from clone RP23-228H14 on chromosome 2 ----isReversed: 0 ----hitSequence: CACUGAGGAUCUCCUAGAAGAGAGAGACAUUCUUC hit 143 : 64142 64176 (fwd) 22.00 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GA:::CC A +AG:::GA:A::+U::UC 64142 CACUGAGGAUCUCCUAGAAGAGAGAGACAUUCUUC 64176 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26447,sp|AL833773.6|AL833773 Mouse DNA sequence from clone RP23-434A2 on chromosome 4 ----isReversed: 1 ----hitSequence: CCCUGAUGAUUGGCAGAUACGAAAAAACACAUUC hit 144 : 73976 73943 (rev) 20.36 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUG :U +CA+AUA+ A: AAA::C ::UC 83156 CCCUGAUGAUUGGCAGAUACGAAAAAACAC-AUUC 83189 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26479,sp|AL833807.5|AL833807 Mouse DNA sequence from clone RP23-305G2 on chromosome 2 ----isReversed: 1 ----hitSequence: AGCUGACCAGUCCAAAAGAGGCCUAAGCAGUUGUC hit 145 : 54593 54559 (rev) 19.66 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:::G CC+AAA +GG C::::C:+U:G:C 10479 AGCUGACCAGUCCAAAAGAGGCCUAAGCAGUUGUC 10513 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26718,sp|AL845170.5|AL845170 Mouse DNA sequence from clone RP23-282A22 on chromosome 2 ----isReversed: 0 ----hitSequence: UACUUAUUAUGUGUAAAUACACUGUAACUGUUUUC hit 146 : 104594 104628 (fwd) 20.90 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACU AU:A:::+:AAAU:+:::G:AA::+U::UC 104594 UACUUAUUAUGUGUAAAUACACUGUAACUGUUUUC 104628 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27180,sp|AL929113.9|AL929113 Mouse DNA sequence from clone RP23-424D23 on chromosome 2 ----isReversed: 1 ----hitSequence: ACCUGAUGAAUGCCUAAAGGCUGAGAAGCGCCUC hit 147 : 134134 134101 (rev) 20.65 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGA GA ::CC:A +:GG::GA A:GC+C:UC 27054 ACCUGAUGAaUGCCUA--AAGGCUGAGAAGCGCCUC 27087 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27554,sp|AP001295.1|AP001295 Mus musculus genomic DNA, chromosome 7, clone:B96. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCUGAGGACGACAGUGAGACUCAUGUC hit 148 : 38937 38972 (fwd) 20.11 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA:GA ::++ +A ++:: GA:AC:C :GUC 38937 AGCUGAGGAGCUGAGGAcGACAGUGAGACUCAUGUC 38972 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #30482,sp|AY137338.1|AY137338 Mus musculus osteoclast inhibitory lectin (Ocil) gene, complete cds. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 149 : 8347 8377 (fwd) 28.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 8347 CACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 8377 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #35215,sp|AY320031.1|AY320031 Mus musculus osteoclast inhibitory lectin (Ocil) mRNA, complete cds. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 150 : 1009 1039 (fwd) 28.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 1009 CACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 1039 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #49015,sp|BC051091.1|BC051091 Mus musculus, Similar to C lectin-related protein A, clone MGC:59011 IMAGE:6529908, mRNA, complete cds. ----isReversed: 0 ----hitSequence: UACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 151 : 1477 1507 (fwd) 27.82 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 1477 UACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 1507 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #72428,sp|AJ271885.2|MMU271885 Mus musculus partial Kcnq1 gene for potassium channel protein and associated 187740 bp genomic fragment ----isReversed: 0 ----hitSequence: AGCUGAGGAGCUGAGGACGACAGUGAGACUCAUGUC hit 152 : 77496 77531 (fwd) 20.11 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA:GA ::++ +A ++:: GA:AC:C :GUC 77496 AGCUGAGGAGCUGAGGAcGACAGUGAGACUCAUGUC 77531 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #2033,sp|AB020754.1|AB020754 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYN8. ----isReversed: 1 ----hitSequence: UGCUCGAGUUCCUAACAGAACGAAACACUUGU hit 153 : 30040 30009 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU :GAGU:CC AA AG:ACGA:AC:CU:GU 24489 UGCU--CGAGUUCCUAACAGAACGAAACACUUGU- 24520 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #8956,sp|AC008075.2|AC008075 Arabidopsis thaliana chromosome 1 BAC F24J5 sequence, complete sequence. ----isReversed: 0 ----hitSequence: UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUUAUC hit 154 : 21705 21738 (fwd) 22.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA GA:UCC: AAU:GGA:GA A:++U :UC 21705 UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUU-AUC 21738 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9038,sp|AC011914.9|AC011914 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence. ----isReversed: 0 ----hitSequence: UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUUAUC hit 155 : 89969 90002 (fwd) 22.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA GA:UCC: AAU:GGA:GA A:++U :UC 89969 UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUU-AUC 90002 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9059,sp|AC012563.7|AC012563 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGAAGAGAUCCAAAAGAGGUUGAUACACUUUUC hit 156 : 72072 72037 (rev) 22.23 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA GA ::CCAAA AG:: GA A::CU::UC 29895 AGCUGAAGAGAUCCAAAaGAGGUUGAUACACUUUUC 29930 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #29960,sp|AF213936.1|AF213936 Prunus dulcis amino acid/peptide transporter (PTR2) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AACUGAUCAGCCCCAAAGGAUGAAACACAUGGC hit 157 : 563 531 (rev) 19.78 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:A CCCA +AGG G:A C:C :G C 1427 AACUGAUCAGCCCCA--AAGGAUGAAACACAUGGC 1459 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #45789,sp|AF360155.1|AF360155 Arabidopsis thaliana putative peptide transport protein (At3g54140) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AACUGAUCAGCUCCAAAGGACGAAACACACGGC hit 158 : 632 600 (rev) 20.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:AG :CCA +AG: CG:A C:C :G C 1407 AACUGAUCAGCUCCA--AAGGACGAAACACACGGC 1439 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #97157,sp|AK117889.1|AK117889 Arabidopsis thaliana At1g68720 mRNA for putative deaminase, complete cds, clone: RAFL19-06-N12. ----isReversed: 1 ----hitSequence: UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUUAUC hit 159 : 3103 3070 (rev) 22.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA GA:UCC: AAU:GGA:GA A:++U :UC 1122 UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUU-AUC 1155 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #99224,sp|AP003266.3|AP003266 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09. ----isReversed: 0 ----hitSequence: CACUGAAGAUUCAGGAAUCAGAGGAAACUGUUGUC hit 160 : 89097 89131 (fwd) 22.79 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA GA:UC: AAU :GA:GA AC:+U:GUC 89097 CACUGAAGAUUCAGGAAUCAGAGGAAACUGUUGUC 89131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #99291,sp|AP003350.3|AP003350 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08. ----isReversed: 0 ----hitSequence: AGCUGAAAAGGCCCAAUUGGGCCGACAAGUCUUC hit 161 : 40695 40728 (fwd) 20.01 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA AG:CC:AA U:GG:CG A:G+ C:UC 40695 AGCUGAAAAGGCCCAAUUGGGCCGACAAGU-CUUC 40728 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #99417,sp|AP003817.2|AP003817 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1167_G06. ----isReversed: 0 ----hitSequence: CAUUGAUGAGGCCCAUAGGCCGAAAAAUUUC hit 162 : 6932 6962 (fwd) 23.01 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +A UGAUGAG:CCCA UAGG:CGAAA:: ::UC 6932 CAUUGAUGAGGCCCA--UAGGCCGAAAAA--UUUC 6962 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #100158,sp|AP006113.1|AP006113 Lotus corniculatus var. japonicus genomic DNA, chromosome 4, clone:LjT45A24, TM0197. ----isReversed: 0 ----hitSequence: AGCUGAUGACUUCAAUUGAAAGAAACAUCUUUC hit 163 : 95322 95354 (fwd) 21.51 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGA U:C A U G:A GAAA::+ ::UC 95322 AGCUGAUGACUUCAA--UUGAAAGAAACAUCUUUC 95354 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101930,sp|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73 ----isReversed: 1 ----hitSequence: ACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC hit 164 : 178598 178566 (rev) 30.47 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ U+G::CGAAAC+ +GUC 16265 ACCUGAUGAGCUCAAGGUAGAGCGAAACC--AGUC 16297 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101930,sp|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73 ----isReversed: 1 ----hitSequence: ACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC hit 165 : 173585 173553 (rev) 27.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ +G::CGAAAC+ +GUC 21278 ACCUGAUGAGCUCAAGGCAGAGCGAAACC--AGUC 21310 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102252,sp|AL132957.1|ATF24B22 Arabidopsis thaliana DNA chromosome 3, BAC clone F24B22 ----isReversed: 0 ----hitSequence: AACUGAUCAGCUCCAAAGGACGAAACACACGGC hit 166 : 32277 32309 (fwd) 20.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:AG :CCA +AG: CG:A C:C :G C 32277 AACUGAUCAGCUCCA--AAGGACGAAACACACGGC 32309 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102300,sp|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project) ----isReversed: 0 ----hitSequence: ACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC hit 167 : 89235 89267 (fwd) 30.47 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ U+G::CGAAAC+ +GUC 89235 ACCUGAUGAGCUCAAGGUAGAGCGAAACC--AGUC 89267 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102300,sp|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project) ----isReversed: 0 ----hitSequence: ACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC hit 168 : 94248 94280 (fwd) 27.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ +G::CGAAAC+ +GUC 94248 ACCUGAUGAGCUCAAGGCAGAGCGAAACC--AGUC 94280 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119282,sp|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21 ----isReversed: 1 ----hitSequence: ACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC hit 169 : 77483 77451 (rev) 30.47 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ U+G::CGAAAC+ +GUC 378 ACCUGAUGAGCUCAAGGUAGAGCGAAACC--AGUC 410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119282,sp|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21 ----isReversed: 1 ----hitSequence: ACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC hit 170 : 72470 72438 (rev) 27.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ +G::CGAAAC+ +GUC 5391 ACCUGAUGAGCUCAAGGCAGAGCGAAACC--AGUC 5423 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #130449,sp|AY039937.1|AY039937 Arabidopsis thaliana At3g13490 mRNA sequence. ----isReversed: 0 ----hitSequence: GGCUGAUGUGUUCCGGAGAAGGGCAAAAAUCGUUUC hit 171 : 767 802 (fwd) 19.53 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGAUG:G :CC +A +AG: C:AAA::C+::UC 767 GGCUGAUGUGUUCCGGAgAAGGGCAAAAAUCGUUUC 802 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #140699,sp|AY084773.1|AY084773 Arabidopsis thaliana clone 117581 mRNA, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUCAGCUCCAAAGGACGAAACACACGGC hit 172 : 621 589 (rev) 20.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:AG :CCA +AG: CG:A C:C :G C 1428 AACUGAUCAGCUCCA--AAGGACGAAACACACGGC 1460 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #145134,sp|AY089208.1|AY089208 Arabidopsis thaliana clone 95459 mRNA, complete sequence. ----isReversed: 1 ----hitSequence: UGCUCGAGUUCCUAACAGAACGAAACACUUGU hit 173 : 169 138 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU :GAGU:CC AA AG:ACGA:AC:CU:GU 1990 UGCU--CGAGUUCCUAACAGAACGAAACACUUGU- 2021 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #149368,sp|AY113884.1|AY113884 Arabidopsis thaliana putative peptide transport protein (At3g54140) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AACUGAUCAGCUCCAAAGGACGAAACACACGGC hit 174 : 503 471 (rev) 20.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:AG :CCA +AG: CG:A C:C :G C 1242 AACUGAUCAGCUCCA--AAGGACGAAACACACGGC 1274 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #157074,sp|AY181573.1|AY181573 Pachycereus gaumeri isolate sa1360 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence. ----isReversed: 0 ----hitSequence: CCCUGACGUGUGCUGGAAGCACAAAACGUUGCGAC hit 175 : 581 615 (fwd) 20.03 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGA:G:GU+C: + +:G+AC:A:+CG+U CG+C 581 CCCUGACGUGUGCUGG-AAGCACAAAACGUUgCGAC 615 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #173665,sp|BT002001.1|BT002001 Arabidopsis thaliana putative protein (At5g53450) mRNA, complete cds. ----isReversed: 1 ----hitSequence: UGCUCGAGUUCCUAACAGAACGAAACACUUGU hit 176 : 259 228 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU :GAGU:CC AA AG:ACGA:AC:CU:GU 2005 UGCU--CGAGUUCCUAACAGAACGAAACACUUGU- 2036 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #173981,sp|BT002317.1|BT002317 Arabidopsis thaliana clone C105095 putative lysyl-tRNA synthetase (At3g13490) mRNA, complete cds. ----isReversed: 0 ----hitSequence: GGCUGAUGUGUUCCGGAGAAGGGCAAAAAUCGUUUC hit 177 : 744 779 (fwd) 19.53 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGAUG:G :CC +A +AG: C:AAA::C+::UC 744 GGCUGAUGUGUUCCGGAgAAGGGCAAAAAUCGUUUC 779 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #177789,sp|BT008410.1|BT008410 Arabidopsis thaliana At5g53450 gene, complete cds. ----isReversed: 1 ----hitSequence: UGCUCGAGUUCCUAACAGAACGAAACACUUGU hit 178 : 76 45 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU :GAGU:CC AA AG:ACGA:AC:CU:GU 1938 UGCU--CGAGUUCCUAACAGAACGAAACACUUGU- 1969 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #179539,sp|X97188.1|CACCEL1 C.annuum mRNA for endo-beta-1,4-glucanase, ccel1 ----isReversed: 0 ----hitSequence: UACUGACGAUCCUCGAAUUACGGAGAAAUUUAUAUC hit 179 : 151 186 (fwd) 22.17 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 ACUGA:GA::C:C AA UA:G::GA:A::+ ::UC 151 UACUGACGAUCCUCGAAuUACGGAGAAAUUUAUAUC 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #180221,sp|X87323.1|CARNACEL1 C.annuum mRNA beta-1,4-endoglycanohydrolase ----isReversed: 0 ----hitSequence: UACUGACGAUCCUCGAAUUACGGAGAAAUUUAUAUC hit 180 : 262 297 (fwd) 22.17 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 ACUGA:GA::C:C AA UA:G::GA:A::+ ::UC 262 UACUGACGAUCCUCGAAuUACGGAGAAAUUUAUAUC 297 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184320,sp|AJ295008.1|DCA295008 Dianthus caryophyllus viroidlike RNA, cultivar Praline, isolate C1 ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 181 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184321,sp|AJ295009.1|DCA295009 Dianthus caryophyllus viroidlike RNA, cultivar Praline, C2 isolate ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 182 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184322,sp|AJ295010.1|DCA295010 Dianthus caryophyllus viroidlike RNA, cultivar Newton ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 183 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184323,sp|AJ295011.1|DCA295011 Dianthus caryophyllus viroidlike RNA, cultivar Tanga ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 184 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184324,sp|AJ295012.1|DCA295012 Dianthus caryophyllus viroidlike DNA, cultivar Tanga ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 185 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184325,sp|AJ295013.1|DCA295013 Dianthus caryophyllus viroidlike DNA, cultivar Praline ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 186 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184326,sp|AJ295014.1|DCA295014 Dianthus caryophyllus viroidlike DNA, cultivar Praline deleted ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 187 : 166 196 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 166 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 196 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184327,sp|AJ295015.1|DCA295015 Dianthus caryophyllus viroidlike DNA, cultivar White Castellaro, isolate K ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 188 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184328,sp|AJ295016.1|DCA295016 Dianthus caryophyllus viroidlike DNA, cultivar White Castellaro, isolate L ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 189 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184329,sp|AJ295017.1|DCA295017 Dianthus caryophyllus viroidlike DNA, cultivar Domingo, isolate M ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 190 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184330,sp|AJ295018.1|DCA295018 Dianthus caryophyllus viroidlike DNA, cultivar Domingo, isolate N ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 191 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184331,sp|AJ295019.1|DCA295019 Dianthus caryophyllus viroidlike DNA, cultivar 1285 hybrid ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 192 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184535,sp|X68034.1|DCVLRNA D.caryophylus viroidlike RNA ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 193 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #3981,sp|AB024946.1|AB024946 Escherichia coli plasmid pB171 DNA, complete sequence. ----isReversed: 0 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 194 : 50499 50537 (fwd) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 50499 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 50537 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #16792,sp|AE000561.1|AE000561 Helicobacter pylori 26695 section 39 of 134 of the complete genome. ----isReversed: 1 ----hitSequence: GACUGAUGAUUACUUGAAAGAAUUAAACCGAUUC hit 195 : 9627 9594 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUG::U C: +A+:G A::AAA:++ :UC 9003 GACUGAUGAUUACUUGAAAGAAUUAAACCGA-UUC 9036 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #17974,sp|AE001878.1|AE001878 Deinococcus radiodurans R1 section 15 of 229 of the complete chromosome 1. ----isReversed: 1 ----hitSequence: AACCGAUGAGGCGAAAGUCGCCGAAACGGGUCGGC hit 196 : 2705 2671 (rev) 21.38 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 AAC GAUGAG:C+ AA +G:CGAA CG++ CG C 9971 AACCGAUGAGGCGAAA-GUCGCCGAAACGGGuCGGC 10005 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22784,sp|AE008044.1|AE008044 Agrobacterium tumefaciens str. C58 circular chromosome, section 102 of 254 of the complete sequence. ----isReversed: 0 ----hitSequence: CGCUGAUGAGGCCGAUGGUGCUGGCCGAAAAGCCCUC hit 197 : 7006 7042 (fwd) 19.64 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 ++CUGAUGAG:CC A GG:CGAAA:GC C:UC 7006 CGCUGAUGAGGCCGAUGgugCUGGCCGAAAAGC-CCUC 7042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #23799,sp|AE009078.1|AE009078 Agrobacterium tumefaciens strain C58 circular chromosome, section 104 of 256 of the complete sequence. ----isReversed: 0 ----hitSequence: CGCUGAUGAGGCCGAUGGUGCUGGCCGAAAAGCCCUC hit 198 : 6660 6696 (fwd) 19.64 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 ++CUGAUGAG:CC A GG:CGAAA:GC C:UC 6660 CGCUGAUGAGGCCGAUGgugCUGGCCGAAAAGC-CCUC 6696 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #28192,sp|AE013707.1|AE013707 Yersinia pestis KIM section 107 of 415 of the complete genome. ----isReversed: 1 ----hitSequence: CCCUGAUGUGGCUUGAUAAAGCCGAAACCUGGGC hit 199 : 1614 1581 (rev) 20.96 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUG:G:C:: A +::G:C:AA C+++ G C 9130 CCCUGAUGUGGCUUGAUAAAGCCGAAACCUG-GGC 9163 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #29655,sp|AE015311.1|AE015311 Shigella flexneri 2a str. 301 section 274 of 412 of the complete genome. ----isReversed: 1 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 200 : 911 873 (rev) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 9726 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 9764 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30406,sp|AE016937.1|AE016937 Bacteroides thetaiotaomicron VPI-5482, section 12 of 21 of the complete genome. ----isReversed: 1 ----hitSequence: AGCUGAUGAUUACCCAGAAUAGGGUGAAACAGAUGU hit 201 : 215762 215727 (rev) 20.82 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGAUGA : CCCA+A UAGG :GAAAC:+ :GU 90200 AGCUGAUGAuUACCCAGAaUAGGGUGAAACAGAUGU- 90235 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30408,sp|AE016939.1|AE016939 Bacteroides thetaiotaomicron VPI-5482, section 14 of 21 of the complete genome. ----isReversed: 1 ----hitSequence: AUCUGAUGACCUUGCAGGAAGAAGGAAAUCCGAUC hit 202 : 221732 221698 (rev) 20.36 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA U:+CA+ +A+:A GAAA:+C+ :UC 85649 AUCUGAUGAcCUUGCAGGAAGAAGGAAAUCCG-AUC 85683 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30448,sp|AE016988.1|AE016988 Shigella flexneri 2a str. 2457T section 11 of 16 of the complete genome. ----isReversed: 1 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 203 : 151038 151000 (rev) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 141869 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 141907 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30454,sp|AE016994.1|AE016994 Chlamydophila caviae GPIC section 1 of 4 of the complete genome. ----isReversed: 0 ----hitSequence: AACUGAUGAGGUGGAAAGACUCCGCAAUCGUCAGC hit 204 : 164739 164773 (fwd) 19.97 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU AG: +:AAA :+ :CG A ::+U:: C 164739 AACUGAUGAGGUGGAAAGACUCCGCAAUCGUCAGC 164773 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30470,sp|AE017010.1|AE017010 Bacillus cereus ATCC 14579 section 13 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AGCUGAUGAAGCUGCGAUAAACCGAAACGUUCUGC hit 205 : 202824 202858 (fwd) 20.30 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGA:: :: +AU:: ::GAA :G+UC: C 202824 AGCUGAUGAAGCUGCGAUAAACCGAAACGUUCUGC 202858 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30488,sp|AE017036.1|AE017036 Bacillus anthracis str. Ames section 13 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AGCUGAUGAAGCUGCGAUAAACCGAAACGCUCUGC hit 206 : 161181 161215 (fwd) 20.81 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGA:: :: +AU:: ::GAA :GCUC: C 161181 AGCUGAUGAAGCUGCGAUAAACCGAAACGCUCUGC 161215 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30500,sp|AE017151.1|AE017151 Haemophilus ducreyi strain 35000HP section 1 of 6 of the complete genome. ----isReversed: 0 ----hitSequence: CGCCGAUGAGUACAAAAACUACGAAACCCGCGUG hit 207 : 95355 95388 (fwd) 21.95 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++C GAUGAGU: +AA ++ :ACGAAAC:C+:GU 95355 CGCCGAUGAGUACAAA-AACUACGAAACCCGCGUG 95388 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #41174,sp|AF107019.1|AF107019 Actinomyces naeslundii strain P-1-K type-1 fimbrial major subunit precursor (fimP) gene, complete cds. ----isReversed: 0 ----hitSequence: GGCUGAGAAGGCCGAGAAGAAGGCCGCGACCGAGGUC hit 208 : 1433 1469 (fwd) 20.48 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +CUGA: AG:CC:A+A +:GG:CG :AC + GUC 1433 GGCUGAGAAGGCCGAGAagAAGGCCGCGACCGAGGUC 1469 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #42603,sp|AF121767.1|AF121767 Bacillus subtilis strain 5D5 recombinant surfactin/lichenysin A synthetase (srfAB-lchAB) gene, partial cds. ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 209 : 4547 4515 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 372 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 404 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #1147,sp|AF200692.2|AF200692 Shigella flexneri 2a she pathogenicity island, complete sequence. ----isReversed: 1 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 210 : 21351 21313 (rev) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 29984 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 30022 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #343,sp|AJ414155.1|AJ414155 Yersinia pestis strain CO92 complete genome; segment 15/20 ----isReversed: 0 ----hitSequence: CCCUGAUGUGGCUUGAUAAAGCCGAAACCUGGGC hit 211 : 137203 137236 (fwd) 20.96 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUG:G:C:: A +::G:C:AA C+++ G C 137203 CCCUGAUGUGGCUUGAUAAAGCCGAAACCUG-GGC 137236 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1100,sp|AP005042.1|AP005042 Streptomyces avermitilis genomic DNA, complete genome, section 22/30. ----isReversed: 1 ----hitSequence: GACCGACGAGGAGCAGAAGCUCCGCAACGAGUC hit 212 : 243865 243833 (rev) 20.67 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AC GA: AG::+:A+A+:+::CG :AC: :GUC 56061 GACCGACGAGGAGCAGAAGCUCCGCAACG--AGUC 56093 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1155,sp|AP005283.1|AP005283 Corynebacterium glutamicum ATCC 13032 DNA, complete genome, section 10/10. ----isReversed: 1 ----hitSequence: UGCCGAUGAUGUCGAAGAGAAGGACGGAAAGUUCUUC hit 213 : 236791 236755 (rev) 19.68 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 +C GAU A GUC++A+A +++GACG AA:G+UC:UC 88861 UGCCGAUGAuGUCGAAGAgAAGGACGGAAAGUUCUUC 88897 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1165,sp|AP005645.1|AP005645 Streptomyces avermitilis plasmid SAP1 DNA, complete genome. ----isReversed: 1 ----hitSequence: UGCUGACCAGGCGCGUAUGCGCCGAGACCUGCGGC hit 214 : 63876 63842 (rev) 20.57 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA::AG:C+: AU:+G:CG:: C:++:G C 30412 UGCUGACCAGGCGCGUAUGCGCCGAGACCUGCGGC 30446 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #2695,sp|X04833.1|ATPRIREP A. rhizogenes plasmid pRiA4b replicator region (hairy-root-inducing plasmid) ----isReversed: 0 ----hitSequence: CGCUGAUGAACCGCAAAGAGGGCGACACGCUCUU hit 215 : 994 1027 (fwd) 22.17 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA GA::C+CAAA A+G::GA A:GCUC:U 994 CGCUGAUGAACCGCAAAGAGGGCGACACGCUCUU- 1027 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #4936,sp|AY026066.1|AY026066 Agrobacterium tumefaciens putative transport protein Mep (mep), RNase D (rnd), hypothetical protein, and adenylate cyclase-like protein (cya2) genes, complete cds; and unknown gene. ----isReversed: 1 ----hitSequence: CGCUGAUGAGGCCGAUGGUGCUGGCCGAAAAGCCCUC hit 216 : 806 770 (rev) 19.64 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 ++CUGAUGAG:CC A GG:CGAAA:GC C:UC 4516 CGCUGAUGAGGCCGAUGgugCUGGCCGAAAAGC-CCUC 4552 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #8010,sp|AY055428.1|AY055428 Vibrio cholerae STX transposon-like element and pilus assembly region, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUUGAGUUUGAAAUACAACGAGACGCGGCGU hit 217 : 74399 74434 (fwd) 19.78 bits ::::::.<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGA.uGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 AACUGA GAGU:::AAAU:::ACGA ACGC+ CGU 74399 AACUGAuUGAGUUUGAAAUACAACGAGACGCGgCGU- 74434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #9452,sp|AY090559.1|AY090559 Providencia rettgeri conjugative genomic island R391, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUUGAGUUUGAAAUACAACGAGACGCGGCGU hit 218 : 64099 64134 (fwd) 19.78 bits ::::::.<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGA.uGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 AACUGA GAGU:::AAAU:::ACGA ACGC+ CGU 64099 AACUGAuUGAGUUUGAAAUACAACGAGACGCGgCGU- 64134 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #40095,sp|D50453.1|BSD453 Bacillus subtilis DNA for 25-36 degree region containing the amyE-srfA region, complete cds. ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 219 : 74350 74318 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 71842 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 71874 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #40659,sp|AJ292964.4|BSP292964 Bacillus sphaericus partial gene for S-layer protein precursor, strain NCTC9602 ----isReversed: 1 ----hitSequence: AACUGAUGAUGUCUAAAAAGAAAGGAACAAGUC hit 220 : 74 42 (rev) 20.60 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU A: :C:AAA+:G: :G AAC: :GUC 2933 AACUGAUGAUGUCUAAAAAGAAAGGAACA--AGUC 2965 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42131,sp|D13262.1|BSSRFAB Bacillus subtilis srfAA and srfAB genes for surfactin synthetase, complete and partial cds. ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 221 : 18685 18653 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 1851 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 1883 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42132,sp|X72672.1|BSSRFAD B.subtilis ORF1, ORF2 and ORF3 for surfactin synthetases ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 222 : 8406 8374 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 5358 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 5390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42133,sp|X70356.1|BSSRFAP B.subtilis srfA-sfp gene region for surfactin synthetase ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 223 : 18161 18129 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 14642 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 14674 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42382,sp|Z99105.2|BSUB0002 Bacillus subtilis complete genome (section 2 of 21): from 213031 to 415798. ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 224 : 181655 181623 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 21114 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 21146 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42989,sp|BX294143.1|BX294143 Pirellula sp. strain 1 complete genome; segment 11/24 ----isReversed: 0 ----hitSequence: AACUGACGUUUCCCAGGAACGAUCACACGUUCUUC hit 225 : 62532 62566 (fwd) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA G::UC CA+ +A GA::A A:G+UC:UC 62532 AACUGACGUUUCCCAGGAACGAUCACACGUUCUUC 62566 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #43033,sp|BX640412.1|BX640412 Bordetella pertussis strain Tohama I, complete genome; segment 2/12 ----isReversed: 1 ----hitSequence: GACUGAUGAGCGCGUCGAUGGCGAAACCCUCGUC hit 226 : 233810 233777 (rev) 19.80 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUGAG: : : :CGAAAC:CU:GUC 114362 GACUGAUGAGCGCGUC-GAUGGCGAAACCCUCGUC 114395 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #46690,sp|D37918.1|D37918 Escherichia coli DNA for Reverse transcriptase like protein, complete cds. ----isReversed: 0 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 227 : 1265 1303 (fwd) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 1265 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 1303 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #1754,sp|AJ494981.1|ECO494981 Escherichia coli pathogenicity island II, strain 536 ----isReversed: 1 ----hitSequence: GACUGUAUGAGCUUCUUGGAGCGAAACCGGGUC hit 228 : 52522 52490 (rev) 20.43 bits :::::.:<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUG.AuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUG AUGAG:::: U::::CGAAAC+++ GUC 49810 GACUGuAUGAGCUUCU--UGGAGCGAAACCGG-GUC 49842 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #26728,sp|U29446.1|SA29446 Streptomyces akiyoshiensis aspartate-semialdehyde dehydrogenase (asd) gene, complete cds. ----isReversed: 0 ----hitSequence: GACCGACGAGGAGCAGAAGCUCCGCAACGAGUC hit 229 : 1829 1861 (fwd) 20.67 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AC GA: AG::+:A+A+:+::CG :AC: :GUC 1829 GACCGACGAGGAGCAGAAGCUCCGCAACG--AGUC 1861 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #36322,sp|Y08956.1|TRY08956 T.rossianum 16S rRNA gene (strain NR-27T) ----isReversed: 0 ----hitSequence: CGCUGAGGAGCCGUUUAGGGCGAAACCGAUGAC hit 230 : 1403 1435 (fwd) 21.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GAG:C+: U:+G:CGA:+C + G+C 1403 CGCUGAGGAGCCGUU--UAGGGCGAAACCGAUGAC 1435 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #36323,sp|Y08957.1|TRY08957 T.rossianum 16S rRNA gene (strain SC-1) ----isReversed: 0 ----hitSequence: CGCUGAGGAGCCGUUUAGGGCGAAACCGAUGAC hit 231 : 1403 1435 (fwd) 21.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GAG:C+: U:+G:CGA:+C + G+C 1403 CGCUGAGGAGCCGUU--UAGGGCGAAACCGAUGAC 1435 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #36324,sp|Y08958.1|TRY08958 T.rossianum 16S rRNA gene (strain AG3-1) ----isReversed: 0 ----hitSequence: CGCUGAGGAGCCGUUUAGGGCGAAACCGAUGAC hit 232 : 1403 1435 (fwd) 21.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GAG:C+: U:+G:CGA:+C + G+C 1403 CGCUGAGGAGCCGUU--UAGGGCGAAACCGAUGAC 1435 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #38102,sp|U97489.1|U97489 Shigella flexneri SBA1336 reverse transcriptase-like protein (sfiA) gene, complete cds. ----isReversed: 1 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 233 : 842 804 (rev) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 2768 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 2806 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1384,sp|AC087112.2|AC087112 Rattus norvegicus clone RP31-162L19 strain Brown Norway, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGAGUUUGAAGGAAGGACUAAAGACUUUUC hit 234 : 48267 48302 (fwd) 20.68 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUG:GU:::AA +:::AC:AAA :CU: UC 48267 AACUGAUGAGUUUGAAGgAAGGACUAAAGACUUUUC 48302 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40211,sp|AF170496.1|AF170496 Peach latent mosaic viroid variant #24 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 235 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40211,sp|AF170496.1|AF170496 Peach latent mosaic viroid variant #24 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 236 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40212,sp|AF170497.1|AF170497 Peach latent mosaic viroid variant #29 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 237 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40212,sp|AF170497.1|AF170497 Peach latent mosaic viroid variant #29 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 238 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40213,sp|AF170498.1|AF170498 Peach latent mosaic viroid variant #21 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUC hit 239 : 302 338 (fwd) 32.76 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40213,sp|AF170498.1|AF170498 Peach latent mosaic viroid variant #21 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGA hit 240 : 37 1 (rev) 25.29 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 303 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGA 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40214,sp|AF170499.1|AF170499 Peach latent mosaic viroid variant #22 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 241 : 303 339 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 303 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40214,sp|AF170499.1|AF170499 Peach latent mosaic viroid variant #22 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 242 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 303 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40215,sp|AF170500.1|AF170500 Peach latent mosaic viroid variant #1 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 243 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40215,sp|AF170500.1|AF170500 Peach latent mosaic viroid variant #1 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 244 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40216,sp|AF170501.1|AF170501 Peach latent mosaic viroid variant #6 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 245 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40216,sp|AF170501.1|AF170501 Peach latent mosaic viroid variant #6 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 246 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40217,sp|AF170502.1|AF170502 Peach latent mosaic viroid variant #7 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 247 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40217,sp|AF170502.1|AF170502 Peach latent mosaic viroid variant #7 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 248 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40218,sp|AF170503.1|AF170503 Peach latent mosaic viroid variant #8 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGACGAGUUCCUGAAAUGGAACGAAACCUUUU hit 249 : 299 333 (fwd) 27.49 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAGU:C: +A U:G:ACGA:A:++U :U 299 CACUGACGAGUUCCUGAaaUGGAACGAAACCUU-UU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40218,sp|AF170503.1|AF170503 Peach latent mosaic viroid variant #8 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGACGAGUCGCUGGGAUACGGCGAAACUUAUGGG hit 250 : 37 1 (rev) 22.12 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAG C+C + UA+G CGA: C:+ :G 300 CACUGACGAGUCGCUGGgaUACGGCGAAACUUAUGGG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40219,sp|AF170504.1|AF170504 Peach latent mosaic viroid variant #11 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUCUC hit 251 : 303 339 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :+ : UC 303 CACUGAUGAGUCUCUGAaaUGAGACGAAACUUAUCUC 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40219,sp|AF170504.1|AF170504 Peach latent mosaic viroid variant #11 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGGC hit 252 : 37 1 (rev) 31.31 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+U:G C 303 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGGC 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40220,sp|AF170505.1|AF170505 Peach latent mosaic viroid variant #12 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUG hit 253 : 303 339 (fwd) 31.90 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 303 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUG 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40220,sp|AF170505.1|AF170505 Peach latent mosaic viroid variant #12 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGA hit 254 : 37 2 (rev) 25.31 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 303 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGA- 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40221,sp|AF170506.1|AF170506 Peach latent mosaic viroid variant #13 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUG hit 255 : 303 339 (fwd) 31.90 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 303 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUG 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40221,sp|AF170506.1|AF170506 Peach latent mosaic viroid variant #13 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGA hit 256 : 37 2 (rev) 25.31 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 303 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGA- 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40222,sp|AF170507.1|AF170507 Peach latent mosaic viroid variant #15 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUG hit 257 : 303 339 (fwd) 31.90 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 303 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUG 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40222,sp|AF170507.1|AF170507 Peach latent mosaic viroid variant #15 from Prunus persica Redhaven cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGA hit 258 : 37 2 (rev) 25.31 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 303 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGA- 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40223,sp|AF170508.1|AF170508 Peach latent mosaic viroid variant #2 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUC hit 259 : 302 338 (fwd) 32.76 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40223,sp|AF170508.1|AF170508 Peach latent mosaic viroid variant #2 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGA hit 260 : 37 1 (rev) 25.29 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 303 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGA 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40224,sp|AF170509.1|AF170509 Peach latent mosaic viroid variant #3 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 261 : 302 338 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40224,sp|AF170509.1|AF170509 Peach latent mosaic viroid variant #3 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGA hit 262 : 37 1 (rev) 25.29 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 303 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGA 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40225,sp|AF170510.1|AF170510 Peach latent mosaic viroid variant #4 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUC hit 263 : 305 341 (fwd) 32.76 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: UC 305 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUC 341 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40225,sp|AF170510.1|AF170510 Peach latent mosaic viroid variant #4 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGA hit 264 : 37 1 (rev) 25.29 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 306 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGA 342 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40226,sp|AF170511.1|AF170511 Peach latent mosaic viroid variant #5 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUC hit 265 : 302 338 (fwd) 32.76 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40226,sp|AF170511.1|AF170511 Peach latent mosaic viroid variant #5 from Prunus persica Harrow Beauty cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGA hit 266 : 37 1 (rev) 25.29 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 303 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGA 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40227,sp|AF170512.1|AF170512 Peach latent mosaic viroid variant #11 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUC hit 267 : 302 337 (fwd) 32.24 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::C ::UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUC-UUUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40227,sp|AF170512.1|AF170512 Peach latent mosaic viroid variant #11 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 268 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40228,sp|AF170513.1|AF170513 Peach latent mosaic viroid variant #15 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUC hit 269 : 302 338 (fwd) 32.76 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40228,sp|AF170513.1|AF170513 Peach latent mosaic viroid variant #15 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGG hit 270 : 37 2 (rev) 24.49 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGG- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40229,sp|AF170514.1|AF170514 Peach latent mosaic viroid variant #16 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUC hit 271 : 302 337 (fwd) 32.24 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::C ::UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUC-UUUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40229,sp|AF170514.1|AF170514 Peach latent mosaic viroid variant #16 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 272 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40230,sp|AF170515.1|AF170515 Peach latent mosaic viroid variant #20 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 273 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40230,sp|AF170515.1|AF170515 Peach latent mosaic viroid variant #20 from Prunus persica Redgold cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 274 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40231,sp|AF170516.1|AF170516 Peach latent mosaic viroid variant #5 from Prunus persica Agua cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUC hit 275 : 301 337 (fwd) 32.76 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40231,sp|AF170516.1|AF170516 Peach latent mosaic viroid variant #5 from Prunus persica Agua cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGA hit 276 : 37 1 (rev) 25.29 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGA 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40232,sp|AF170517.1|AF170517 Peach latent mosaic viroid variant #11 from Prunus persica Agua cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 277 : 301 337 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40232,sp|AF170517.1|AF170517 Peach latent mosaic viroid variant #11 from Prunus persica Agua cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGAG hit 278 : 37 1 (rev) 27.52 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40233,sp|AF170518.1|AF170518 Peach latent mosaic viroid variant #2 from Prunus persica Suncrest cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUG hit 279 : 300 336 (fwd) 29.80 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: U 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40233,sp|AF170518.1|AF170518 Peach latent mosaic viroid variant #2 from Prunus persica Suncrest cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGAG hit 280 : 37 1 (rev) 27.52 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40234,sp|AF170519.1|AF170519 Peach latent mosaic viroid variant #1 from Prunus persica Golden Health cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 281 : 300 336 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40234,sp|AF170519.1|AF170519 Peach latent mosaic viroid variant #1 from Prunus persica Golden Health cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGA hit 282 : 37 1 (rev) 25.29 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40235,sp|AF170520.1|AF170520 Peach latent mosaic viroid variant #1 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUCUC hit 283 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :+ : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUUAUCUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40235,sp|AF170520.1|AF170520 Peach latent mosaic viroid variant #1 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGA hit 284 : 37 2 (rev) 26.97 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40236,sp|AF170521.1|AF170521 Peach latent mosaic viroid variant #2 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUCUC hit 285 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :+ : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUUAUCUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40236,sp|AF170521.1|AF170521 Peach latent mosaic viroid variant #2 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGA hit 286 : 37 2 (rev) 26.97 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40237,sp|AF170522.1|AF170522 Peach latent mosaic viroid variant #3 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUCUC hit 287 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :+ : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUUAUCUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40237,sp|AF170522.1|AF170522 Peach latent mosaic viroid variant #3 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGA hit 288 : 37 2 (rev) 26.97 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40238,sp|AF170523.1|AF170523 Peach latent mosaic viroid variant #4 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUCUC hit 289 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :+ : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUUAUCUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40238,sp|AF170523.1|AF170523 Peach latent mosaic viroid variant #4 from Prunus persica Tylor cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGA hit 290 : 37 2 (rev) 26.97 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64798,sp|AF339739.1|AF339739 Peach latent mosaic viroid peach isolate, complete genome. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUC hit 291 : 300 336 (fwd) 32.76 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64798,sp|AF339739.1|AF339739 Peach latent mosaic viroid peach isolate, complete genome. ----isReversed: 1 ----hitSequence: CACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUGA hit 292 : 37 2 (rev) 21.54 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG C+: +A U:+G CGAA+C:+ :G+ 300 CACUGAUGAGGCGUUGAgaUACGGCGAAACUUAUGA- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64799,sp|AF339740.1|AF339740 Peach latent mosaic viroid wild pear isolate, complete genome. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUG hit 293 : 301 337 (fwd) 29.80 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: U 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64799,sp|AF339740.1|AF339740 Peach latent mosaic viroid wild pear isolate, complete genome. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUGAG hit 294 : 37 1 (rev) 22.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAU AG:C+: +A U:+G:CG A+C:+ :G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGGAACUUAUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64800,sp|AF339741.1|AF339741 Peach latent mosaic viroid cherry isolate, complete genome. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUG hit 295 : 300 336 (fwd) 29.80 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: U 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64800,sp|AF339741.1|AF339741 Peach latent mosaic viroid cherry isolate, complete genome. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGAG hit 296 : 37 1 (rev) 27.52 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64801,sp|AF339742.1|AF339742 Peach latent mosaic viroid plum isolate, complete genome. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUG hit 297 : 301 337 (fwd) 29.80 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: U 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #64801,sp|AF339742.1|AF339742 Peach latent mosaic viroid plum isolate, complete genome. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGAG hit 298 : 37 1 (rev) 27.52 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #136599,sp|M63666.1|BYDSATRN Cereal yellow dwarf virus-RPA satellite RNA. ----isReversed: 1 ----hitSequence: GACUGAUGAGUCCGAAAGGACGAAACACCAGUG hit 299 : 222 190 (rev) 30.90 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUGAGUCC:A +:GGACGAAAC:C :GU 101 GACUGAUGAGUCCGA--AAGGACGAAACACCAGUG 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137422,sp|AJ247112.1|CCH247112 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 1 ----isReversed: 0 ----hitSequence: UCCUGAUGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 300 : 18 54 (fwd) 20.74 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGAUGA G::C:A +:G::CGAAA::+ ::UC 18 UCCUGAUGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137423,sp|AJ247113.1|CCH247113 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 2 ----isReversed: 0 ----hitSequence: UCCUGACGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 301 : 18 54 (fwd) 20.67 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGA:GA G::C:A +:G::CGA:A::+ ::UC 18 UCCUGACGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137424,sp|AJ247114.1|CCH247114 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 3 ----isReversed: 0 ----hitSequence: UCCUGACGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 302 : 18 54 (fwd) 20.67 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGA:GA G::C:A +:G::CGA:A::+ ::UC 18 UCCUGACGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137425,sp|AJ247115.1|CCH247115 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 4 ----isReversed: 0 ----hitSequence: UCCUGACGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 303 : 18 54 (fwd) 20.67 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGA:GA G::C:A +:G::CGA:A::+ ::UC 18 UCCUGACGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137426,sp|AJ247116.1|CCH247116 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 6 ----isReversed: 0 ----hitSequence: UCCUGAUGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 304 : 18 54 (fwd) 20.74 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGAUGA G::C:A +:G::CGAAA::+ ::UC 18 UCCUGAUGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137426,sp|AJ247116.1|CCH247116 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 6 ----isReversed: 1 ----hitSequence: UACUGAUGAGGCUGUGGAGAGAGCGAAAGCUUUACUC hit 305 : 109 73 (rev) 21.84 bits ::::::<<<.<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcu.cGUC 35 ACUGAUGA G::+: +A :+::CGAAA ++U + UC 291 UACUGAUGAgGCUGUGGAGAGAGCGAAAGCUUuACUC 327 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137427,sp|AJ247117.1|CCH247117 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 7 ----isReversed: 0 ----hitSequence: UCCUGACGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 306 : 18 54 (fwd) 20.67 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGA:GA G::C:A +:G::CGA:A::+ ::UC 18 UCCUGACGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137428,sp|AJ247118.1|CCH247118 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 25 ----isReversed: 0 ----hitSequence: UCCUGACGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 307 : 18 54 (fwd) 20.67 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGA:GA G::C:A +:G::CGA:A::+ ::UC 18 UCCUGACGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137429,sp|AJ247119.1|CCH247119 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 26 ----isReversed: 0 ----hitSequence: UCCUGACGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 308 : 16 52 (fwd) 20.67 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGA:GA G::C:A +:G::CGA:A::+ ::UC 16 UCCUGACGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 52 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137430,sp|AJ247120.1|CCH247120 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 30 ----isReversed: 0 ----hitSequence: UCCUGACGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 309 : 18 54 (fwd) 20.67 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGA:GA G::C:A +:G::CGA:A::+ ::UC 18 UCCUGACGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137431,sp|AJ247121.1|CCH247121 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 35 ----isReversed: 0 ----hitSequence: UCCUGACGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 310 : 18 54 (fwd) 20.67 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGA:GA G::C:A +:G::CGA:A::+ ::UC 18 UCCUGACGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137432,sp|AJ247122.1|CCH247122 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 38 ----isReversed: 0 ----hitSequence: UCCUGACGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 311 : 17 53 (fwd) 20.67 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGA:GA G::C:A +:G::CGA:A::+ ::UC 17 UCCUGACGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 53 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137433,sp|AJ247123.1|CCH247123 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 41 ----isReversed: 0 ----hitSequence: UCCUGAUGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 312 : 17 53 (fwd) 20.74 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGAUGA G::C:A +:G::CGAAA::+ ::UC 17 UCCUGAUGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 53 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137433,sp|AJ247123.1|CCH247123 Chrysanthemum chlorotic mottle viroid RNA, variant CMNS 41 ----isReversed: 1 ----hitSequence: UCCUGAUGAGGCUGUGGAGAGAGCGAAAGCUUUACUC hit 313 : 108 72 (rev) 20.82 bits ::::::<<<.<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcu.cGUC 35 CUGAUGA G::+: +A :+::CGAAA ++U + UC 291 UCCUGAUGAgGCUGUGGAGAGAGCGAAAGCUUuACUC 327 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137438,sp|Y14700.1|CCMVCM5 Chrysanthemum chlorotic mottle viroid ----isReversed: 0 ----hitSequence: UCCUGAUGAAGAUCCAUGACAGGAUCGAAACCUCUUC hit 314 : 18 54 (fwd) 20.74 bits ::::::<<<.<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA..uaGgaCGAaACgcucGUC 35 CUGAUGA G::C:A +:G::CGAAA::+ ::UC 18 UCCUGAUGAaGAUCCAUGacAGGAUCGAAACCU-CUUC 54 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137438,sp|Y14700.1|CCMVCM5 Chrysanthemum chlorotic mottle viroid ----isReversed: 1 ----hitSequence: UCCUGAUGAGGCUGUGGAGAGAGCGAAAGCUUUACUC hit 315 : 109 73 (rev) 20.82 bits ::::::<<<.<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcu.cGUC 35 CUGAUGA G::+: +A :+::CGAAA ++U + UC 291 UCCUGAUGAgGCUGUGGAGAGAGCGAAAGCUUuACUC 327 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #137680,sp|D00721.1|CHYSATS1 Chicory yellow mottle virus satellite RNA, complete cds. ----isReversed: 0 ----hitSequence: GCCUGAUGAGUCCGAAAGGACGAAACAGUACUG hit 316 : 17 49 (fwd) 28.85 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAGUCC:A +:GGACGAAA :+U: U 17 GCCUGAUGAGUCCGA--AAGGACGAAACAGUACUG 49 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #138243,sp|Y12833.1|CSCVLRNA Cherry small circular viroid-like RNA, satellite RNA ----isReversed: 0 ----hitSequence: ACCUGAAGAGGACAAAAGUCCGAAACGGUAUUC hit 317 : 17 49 (fwd) 27.41 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGA GAG::C+A ++G::CGA A::+U::UC 17 ACCUGAAGAGGACAA--AAGUCCGAAACGGUAUUC 49 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #138243,sp|Y12833.1|CSCVLRNA Cherry small circular viroid-like RNA, satellite RNA ----isReversed: 1 ----hitSequence: UACUGACGAGUUCAAAAGAACGAAAUAGUUAU hit 318 : 315 284 (rev) 26.70 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGA:GAGU:C+A ++G:ACGA:A::+U::U 137 UACUGACGAGUUCAA--AAGAACGAAAUAGUUAU- 168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140420,sp|AJ536612.1|ELA536612 Eggplant latent viroid complete genome, isolate 1 ----isReversed: 0 ----hitSequence: CCCUGAUGAGUCCAAAAGGACGAAAUGGGGUUC hit 319 : 17 49 (fwd) 27.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGAGUCC+A ++GGACGAAA ++ UC 17 CCCUGAUGAGUCCAA--AAGGACGAAAUGGGGUUC 49 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140420,sp|AJ536612.1|ELA536612 Eggplant latent viroid complete genome, isolate 1 ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCCGAAAGGGCGAAACGGUACAUC hit 320 : 182 149 (rev) 29.44 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGAUGAG:CC:A +:GG:CGAAA G+U C UC 154 CCCUGAUGAGCCCGA--AAGGGCGAAACGGUaCAUC 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140421,sp|AJ536613.1|ELA536613 Eggplant latent viroid complete genome, isolate 2 ----isReversed: 0 ----hitSequence: CCCUGAUGAGACCGAAAGGUCGAAAUGGGGUUUC hit 321 : 17 50 (fwd) 23.59 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGAUGAG:CC:A +:GG:CGAAA :++ : UC 17 CCCUGAUGAGACCGA--AAGGUCGAAAUGGGgUUUC 50 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140421,sp|AJ536613.1|ELA536613 Eggplant latent viroid complete genome, isolate 2 ----isReversed: 1 ----hitSequence: CCCUGAUGAGUCCGAAAGGACGAAACGGUACAUUC hit 322 : 181 147 (rev) 28.20 bits ::::::<<<<<<<<____>>>>>>>><<<__..>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu..cGUC 35 + CUGAUGAGUCC:A +:GGACGAAA::+U ::UC 153 CCCUGAUGAGUCCGA--AAGGACGAAACGGUacAUUC 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140422,sp|AJ536614.1|ELA536614 Eggplant latent viroid complete genome, isolate 3 ----isReversed: 0 ----hitSequence: CCCUGAUGAGUCCGAAAGGACGAAAUGGGGUCUC hit 323 : 17 50 (fwd) 26.52 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGAUGAGUCC:A +:GGACGAAA :++ : UC 17 CCCUGAUGAGUCCGA--AAGGACGAAAUGGGgUCUC 50 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140422,sp|AJ536614.1|ELA536614 Eggplant latent viroid complete genome, isolate 3 ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCCAAAAGGGCGAAACGGUACAC hit 324 : 182 150 (rev) 27.65 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGAG:CC+A ++GG:CGAA+ :+U: +C 154 CCCUGAUGAGCCCAA--AAGGGCGAAACGGUACAC 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140423,sp|AJ536615.1|ELA536615 Eggplant latent viroid complete genome, isolate 4 ----isReversed: 0 ----hitSequence: CCCUGAUGAGUCCAAAAGGACGAAAUGGGGUUUC hit 325 : 17 50 (fwd) 26.13 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGAUGAGUCC+A ++GGACGAAA :++ : UC 17 CCCUGAUGAGUCCAA--AAGGACGAAAUGGGgUUUC 50 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140423,sp|AJ536615.1|ELA536615 Eggplant latent viroid complete genome, isolate 4 ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCCGAAAGAGCGAAACGGUACAUUC hit 326 : 182 148 (rev) 23.47 bits ::::::<<<<<<<<____>>>>>>>><<<__..>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu..cGUC 35 + CUGAUGAG: C:A +:G :CGAAA::+U ::UC 153 CCCUGAUGAGCCCGA--AAGAGCGAAACGGUacAUUC 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140424,sp|AJ536616.1|ELA536616 Eggplant latent viroid complete genome, isolate 5 ----isReversed: 0 ----hitSequence: UCCUGAUGAGUCCAAAAGGACGAAAUGGGGUUC hit 327 : 17 49 (fwd) 27.67 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAGUCC+A ++GGACGAAA ++ UC 17 UCCUGAUGAGUCCAA--AAGGACGAAAUGGGGUUC 49 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140424,sp|AJ536616.1|ELA536616 Eggplant latent viroid complete genome, isolate 5 ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCCGAAAGGGCGAAACGGUACAUC hit 328 : 182 149 (rev) 29.44 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGAUGAG:CC:A +:GG:CGAAA G+U C UC 154 CCCUGAUGAGCCCGA--AAGGGCGAAACGGUaCAUC 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140425,sp|AJ536617.1|ELA536617 Eggplant latent viroid complete genome, isolate 6 ----isReversed: 0 ----hitSequence: CCCUGAUGAGUCCGAAAGGACGAAAUGGGGUUC hit 329 : 17 49 (fwd) 28.37 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGAGUCC:A +:GGACGAAA ++ UC 17 CCCUGAUGAGUCCGA--AAGGACGAAAUGGGGUUC 49 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140425,sp|AJ536617.1|ELA536617 Eggplant latent viroid complete genome, isolate 6 ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCCGAAAGGGCGAAACGGUACAUC hit 330 : 182 149 (rev) 29.44 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGAUGAG:CC:A +:GG:CGAAA G+U C UC 154 CCCUGAUGAGCCCGA--AAGGGCGAAACGGUaCAUC 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140426,sp|AJ536618.1|ELA536618 Eggplant latent viroid complete genome, isolate 7 ----isReversed: 0 ----hitSequence: CCCUGAUGAGACCGAAAGGUCGAAAUGGGGUUUC hit 331 : 17 50 (fwd) 23.59 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGAUGAG:CC:A +:GG:CGAAA :++ : UC 17 CCCUGAUGAGACCGA--AAGGUCGAAAUGGGgUUUC 50 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140426,sp|AJ536618.1|ELA536618 Eggplant latent viroid complete genome, isolate 7 ----isReversed: 1 ----hitSequence: CCCUGAUGAGUCCGAAAGGACGAAACGGUACAUUC hit 332 : 180 146 (rev) 28.20 bits ::::::<<<<<<<<____>>>>>>>><<<__..>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu..cGUC 35 + CUGAUGAGUCC:A +:GGACGAAA::+U ::UC 153 CCCUGAUGAGUCCGA--AAGGACGAAACGGUacAUUC 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140427,sp|AJ536619.1|ELA536619 Eggplant latent viroid complete genome, isolate 8 ----isReversed: 0 ----hitSequence: CCCUGAUGAGACCGAAAGGUCGAAAUGGGGUUUC hit 333 : 17 50 (fwd) 23.59 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGAUGAG:CC:A +:GG:CGAAA :++ : UC 17 CCCUGAUGAGACCGA--AAGGUCGAAAUGGGgUUUC 50 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140427,sp|AJ536619.1|ELA536619 Eggplant latent viroid complete genome, isolate 8 ----isReversed: 1 ----hitSequence: CCCUGAUGAGUCCGAAAGGACGAAACGGUACAUUC hit 334 : 182 148 (rev) 28.20 bits ::::::<<<<<<<<____>>>>>>>><<<__..>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu..cGUC 35 + CUGAUGAGUCC:A +:GGACGAAA::+U ::UC 153 CCCUGAUGAGUCCGA--AAGGACGAAACGGUacAUUC 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140428,sp|AJ536620.1|ELA536620 Eggplant latent viroid complete genome, isolate 9 ----isReversed: 0 ----hitSequence: CCCUGAUGAGUCCGAAAGGACGAAAUGGGGUCUC hit 335 : 17 50 (fwd) 26.52 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGAUGAGUCC:A +:GGACGAAA :++ : UC 17 CCCUGAUGAGUCCGA--AAGGACGAAAUGGGgUCUC 50 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #140428,sp|AJ536620.1|ELA536620 Eggplant latent viroid complete genome, isolate 9 ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCCAAAAGGGCGAAACGGUACAC hit 336 : 182 150 (rev) 27.65 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGAG:CC+A ++GG:CGAA+ :+U: +C 154 CCCUGAUGAGCCCAA--AAGGGCGAAACGGUACAC 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #180957,sp|X01984.1|LTSVARN2 Lucerne transient streak virus satellite RNA (LTSV-A) RNA 2 sequence ----isReversed: 0 ----hitSequence: CACUGAAGAUGGCCCGGUAGGGCCGAAACGUACUC hit 337 : 186 220 (fwd) 21.03 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA GA G:CC: + +:GG:CGA A :+ : UC 186 CACUGAAGAuGGCCCGGUAGGGCCGAAACGU-ACUC 220 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #180957,sp|X01984.1|LTSVARN2 Lucerne transient streak virus satellite RNA (LTSV-A) RNA 2 sequence ----isReversed: 1 ----hitSequence: CACUGAUGAGGCCAUGGCAGGCCGAAACGUCCGC hit 338 : 139 106 (rev) 24.55 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAG:CC+ + +GG:CGAA G+ C C 186 CACUGAUGAGGCCAUGGCAGGCCGAAACGU-CCGC 219 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #180958,sp|X01985.1|LTSVNRN2 Lucerne transient streak virus (LTSV-N) RNA2 sequence ----isReversed: 0 ----hitSequence: CACUGAAGAUGGCCCGGUAGGGCCGAAACGUACUC hit 339 : 185 219 (fwd) 21.03 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA GA G:CC: + +:GG:CGA A :+ : UC 185 CACUGAAGAuGGCCCGGUAGGGCCGAAACGU-ACUC 219 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #180958,sp|X01985.1|LTSVNRN2 Lucerne transient streak virus (LTSV-N) RNA2 sequence ----isReversed: 1 ----hitSequence: CACUGAUGAGGCCAUGGCAGGCCGAAACGUCCGC hit 340 : 139 106 (rev) 24.55 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAG:CC+ + +GG:CGAA G+ C C 186 CACUGAUGAGGCCAUGGCAGGCCGAAACGU-CCGC 219 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #181766,sp|D00341.1|MTSCA Lucerne transient streak virus (LTSV-C) satellite RNA, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAAGAUGGCCUAGUAAGGCCGAAACGUAGUC hit 341 : 185 219 (fwd) 27.73 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA GA G:CC:A+ +:GG:CGA AC:+ :GUC 185 CACUGAAGAuGGCCUAGUAAGGCCGAAACGU-AGUC 219 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #181766,sp|D00341.1|MTSCA Lucerne transient streak virus (LTSV-C) satellite RNA, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGGCCAUGGUAGGCCGAAACGUCCAGUC hit 342 : 138 103 (rev) 28.94 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 +ACUGAUGAG:CC+ + U+GG:CGAAAC:+ :GUC 185 CACUGAUGAGGCCAUGGUAGGCCGAAACGUCcAGUC 220 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #182993,sp|J02386.1|NOR2 Solanum nodiflorum mottle virus satellite RNA. ----isReversed: 0 ----hitSequence: CUCUGAUGAGUCCAAAAGGACGAAACGGAUGUA hit 343 : 65 97 (fwd) 27.27 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGAGUCC+A ++GGACGAAAC:+ :GU 65 CUCUGAUGAGUCCAA--AAGGACGAAACGGAUGUA 97 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184662,sp|AJ241818.1|PLA241818 peach latent mosaic viroid, varient gds6-1b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGU hit 344 : 301 336 (fwd) 31.34 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAAC:CU:GU 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184662,sp|AJ241818.1|PLA241818 peach latent mosaic viroid, varient gds6-1b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 345 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184663,sp|AJ241819.1|PLA241819 peach latent mosaic viroid, varient gds6-1 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGUA hit 346 : 301 337 (fwd) 32.14 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAAC:CU:GU 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGUA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184663,sp|AJ241819.1|PLA241819 peach latent mosaic viroid, varient gds6-1 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUGAG hit 347 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAaaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184664,sp|AJ241820.1|PLA241820 peach latent mosaic viroid, varient gds6-3 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 348 : 301 337 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184664,sp|AJ241820.1|PLA241820 peach latent mosaic viroid, varient gds6-3 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 349 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184665,sp|AJ241821.1|PLA241821 peach latent mosaic viroid, varient gds6-7 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGAC hit 350 : 301 337 (fwd) 33.46 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA+C:CU:G+C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGAC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184665,sp|AJ241821.1|PLA241821 peach latent mosaic viroid, varient gds6-7 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 351 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184666,sp|AJ241822.1|PLA241822 peach latent mosaic viroid, varient gds6-8 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 352 : 300 336 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184666,sp|AJ241822.1|PLA241822 peach latent mosaic viroid, varient gds6-8 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 353 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184667,sp|AJ241823.1|PLA241823 peach latent mosaic viroid, varient gds6-11 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUAAAAUGAGACGAAACUCUUUUC hit 354 : 301 337 (fwd) 35.39 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: AA U::GACGAAA::CU::UC 301 CACUGAUGAGUCUCUAAaaUGAGACGAAACUCUUUUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184667,sp|AJ241823.1|PLA241823 peach latent mosaic viroid, varient gds6-11 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 355 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184668,sp|AJ241824.1|PLA241824 peach latent mosaic viroid, varient gds6-12 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 356 : 301 337 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184668,sp|AJ241824.1|PLA241824 peach latent mosaic viroid, varient gds6-12 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 357 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184669,sp|AJ241825.1|PLA241825 peach latent mosaic viroid, varient gds6-22 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUAC hit 358 : 301 337 (fwd) 31.81 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA+::CU::+C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUAC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184669,sp|AJ241825.1|PLA241825 peach latent mosaic viroid, varient gds6-22 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 359 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184670,sp|AJ241826.1|PLA241826 peach latent mosaic viroid, varient gds15-1s ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 360 : 301 337 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184670,sp|AJ241826.1|PLA241826 peach latent mosaic viroid, varient gds15-1s ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 361 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184671,sp|AJ241827.1|PLA241827 peach latent mosaic viroid, varient gds15-2s ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGUC hit 362 : 301 337 (fwd) 36.50 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAAC:CU:GUC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184671,sp|AJ241827.1|PLA241827 peach latent mosaic viroid, varient gds15-2s ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGAA hit 363 : 37 1 (rev) 26.11 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGAA 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184672,sp|AJ241828.1|PLA241828 peach latent mosaic viroid, varient gds15-4s ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAAUGAGACGAAACUCUUUU hit 364 : 300 336 (fwd) 28.65 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 300 CACUGAUGAGUCUCUGAaaaUGAGACGAAACUCUUUU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184672,sp|AJ241828.1|PLA241828 peach latent mosaic viroid, varient gds15-4s ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 365 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 300 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184673,sp|AJ241829.1|PLA241829 peach latent mosaic viroid, varient gds15-5s ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 366 : 298 334 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 298 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184673,sp|AJ241829.1|PLA241829 peach latent mosaic viroid, varient gds15-5s ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 367 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 299 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184674,sp|AJ241830.1|PLA241830 peach latent mosaic viroid, varient gds15-6s ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGUC hit 368 : 300 336 (fwd) 36.50 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAAC:CU:GUC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184674,sp|AJ241830.1|PLA241830 peach latent mosaic viroid, varient gds15-6s ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 369 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184675,sp|AJ241831.1|PLA241831 peach latent mosaic viroid, varient gds15-4as ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUAUC hit 370 : 300 336 (fwd) 32.24 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUAUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184675,sp|AJ241831.1|PLA241831 peach latent mosaic viroid, varient gds15-4as ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUGAG hit 371 : 37 1 (rev) 26.11 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUCUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184676,sp|AJ241832.1|PLA241832 peach latent mosaic viroid, varient gds15-6as ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 372 : 300 336 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184676,sp|AJ241832.1|PLA241832 peach latent mosaic viroid, varient gds15-6as ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 373 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184677,sp|AJ241833.1|PLA241833 peach latent mosaic viroid, varient gds15-7as ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 374 : 300 336 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184677,sp|AJ241833.1|PLA241833 peach latent mosaic viroid, varient gds15-7as ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 375 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184678,sp|AJ241834.1|PLA241834 peach latent mosaic viroid, varient gds15-10as ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 376 : 301 337 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184678,sp|AJ241834.1|PLA241834 peach latent mosaic viroid, varient gds15-10as ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 377 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184679,sp|AJ241835.1|PLA241835 peach latent mosaic viroid, varient gds15-11as ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 378 : 300 336 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184679,sp|AJ241835.1|PLA241835 peach latent mosaic viroid, varient gds15-11as ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 379 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184680,sp|AJ241836.1|PLA241836 peach latent mosaic viroid, varient gds15-12as ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 380 : 300 336 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184680,sp|AJ241836.1|PLA241836 peach latent mosaic viroid, varient gds15-12as ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 381 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184681,sp|AJ241837.1|PLA241837 peach latent mosaic viroid, varient gds15-18as ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGUC hit 382 : 301 337 (fwd) 36.50 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAAC:CU:GUC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184681,sp|AJ241837.1|PLA241837 peach latent mosaic viroid, varient gds15-18as ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 383 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184682,sp|AJ241838.1|PLA241838 peach latent mosaic viroid, varient esc10-1 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 384 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184683,sp|AJ241839.1|PLA241839 peach latent mosaic viroid, varient esc10-2 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 385 : 300 336 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184683,sp|AJ241839.1|PLA241839 peach latent mosaic viroid, varient esc10-2 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 386 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 300 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184684,sp|AJ241840.1|PLA241840 peach latent mosaic viroid, varient esc10-3 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 387 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184684,sp|AJ241840.1|PLA241840 peach latent mosaic viroid, varient esc10-3 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGAA hit 388 : 37 1 (rev) 27.53 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGAA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184685,sp|AJ241841.1|PLA241841 peach latent mosaic viroid, varient esc10-4 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 389 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184685,sp|AJ241841.1|PLA241841 peach latent mosaic viroid, varient esc10-4 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 390 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184686,sp|AJ241842.1|PLA241842 peach latent mosaic viroid, varient esc10-5 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 391 : 301 337 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184686,sp|AJ241842.1|PLA241842 peach latent mosaic viroid, varient esc10-5 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 392 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184687,sp|AJ241843.1|PLA241843 peach latent mosaic viroid, varient esc10-6b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 393 : 299 335 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 299 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184687,sp|AJ241843.1|PLA241843 peach latent mosaic viroid, varient esc10-6b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUGA hit 394 : 37 2 (rev) 23.27 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C:: +A U::G:CGAA+C:+U:G+ 299 CACUGAUGAGCCACUGAaaUGCGGCGAAACUUUUGA- 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184688,sp|AJ241844.1|PLA241844 peach latent mosaic viroid, varient esc10-12 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 395 : 301 337 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184688,sp|AJ241844.1|PLA241844 peach latent mosaic viroid, varient esc10-12 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 396 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184689,sp|AJ241845.1|PLA241845 peach latent mosaic viroid, varient esc10-13 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUGU hit 397 : 301 336 (fwd) 29.69 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAAC:C :GU 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUGU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184689,sp|AJ241845.1|PLA241845 peach latent mosaic viroid, varient esc10-13 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGAA hit 398 : 37 1 (rev) 27.53 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGAA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184690,sp|AJ241846.1|PLA241846 peach latent mosaic viroid, varient ls11-2b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 399 : 301 337 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184690,sp|AJ241846.1|PLA241846 peach latent mosaic viroid, varient ls11-2b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGAG hit 400 : 37 1 (rev) 27.52 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184691,sp|AJ241847.1|PLA241847 peach latent mosaic viroid, varient ls11-3 ----isReversed: 0 ----hitSequence: CACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUGUC hit 401 : 300 336 (fwd) 33.37 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGU::: +A U:::ACGAAAC:CU:GUC 300 CACUGAUGAGUUUCUGAaaUGAGACGAAACUCUUGUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184691,sp|AJ241847.1|PLA241847 peach latent mosaic viroid, varient ls11-3 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 402 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184692,sp|AJ241848.1|PLA241848 peach latent mosaic viroid, varient ls11-4 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 403 : 300 336 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184692,sp|AJ241848.1|PLA241848 peach latent mosaic viroid, varient ls11-4 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 404 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184693,sp|AJ241849.1|PLA241849 peach latent mosaic viroid, varient ls11-6 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 405 : 301 337 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184693,sp|AJ241849.1|PLA241849 peach latent mosaic viroid, varient ls11-6 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGGG hit 406 : 37 1 (rev) 28.35 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+U:G 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGGG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184694,sp|AJ241850.1|PLA241850 peach latent mosaic viroid, varient ls11-12 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAAGAGACGAAACUCUUUUC hit 407 : 300 336 (fwd) 34.44 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A +::GACGAAA::CU::UC 300 CACUGAUGAGUCUCUGAaaAGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184694,sp|AJ241850.1|PLA241850 peach latent mosaic viroid, varient ls11-12 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 408 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184696,sp|AJ550545.1|PLA550545 Peach latent mosaic viroid complete genome, isolate PC-C31 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUCUA hit 409 : 301 337 (fwd) 28.64 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: U 301 CACUGAUGAGUCUUUGAgaUAAGACGAAACUCUUCUA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184696,sp|AJ550545.1|PLA550545 Peach latent mosaic viroid complete genome, isolate PC-C31 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUGU hit 410 : 37 2 (rev) 22.07 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C:: + ::G:CGAAAC:+ :GU 301 CACUGAUGAGCCUUUGCgaCAAGGCGAAACUUAUGU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184697,sp|AJ550898.1|PLA550898 Peach latent mosaic viroid complete genome, isolate PC-C39 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUCUA hit 411 : 301 337 (fwd) 28.64 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: U 301 CACUGAUGAGUCUUUGAaaUAAGACGAAACUCUUCUA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184697,sp|AJ550898.1|PLA550898 Peach latent mosaic viroid complete genome, isolate PC-C39 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUGU hit 412 : 37 2 (rev) 22.07 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C:: + ::G:CGAAAC:+ :GU 301 CACUGAUGAGCCUUUGCgaCAAGGCGAAACUUAUGU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184698,sp|AJ550899.1|PLA550899 Peach latent mosaic viroid complete genome, isolate PC-C41 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUCUA hit 413 : 301 337 (fwd) 28.64 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: U 301 CACUGAUGAGUCUUUGAgaUAAGACGAAACUCUUCUA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184698,sp|AJ550899.1|PLA550899 Peach latent mosaic viroid complete genome, isolate PC-C41 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUGU hit 414 : 37 2 (rev) 24.70 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C:: + U::G:CGAAAC:+ :GU 301 CACUGAUGAGCCUUUGCgaUAAGGCGAAACUUAUGU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184699,sp|AJ550900.1|PLA550900 Peach latent mosaic viroid complete genome, isolate PC-C34 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUCUA hit 415 : 301 337 (fwd) 28.64 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: U 301 CACUGAUGAGUCUUUGAgaUAAGACGAAACUCUUCUA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184699,sp|AJ550900.1|PLA550900 Peach latent mosaic viroid complete genome, isolate PC-C34 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUGU hit 416 : 37 2 (rev) 22.07 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C:: + ::G:CGAAAC:+ :GU 301 CACUGAUGAGCCUUUGCgaCAAGGCGAAACUUAUGU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184700,sp|AJ550901.1|PLA550901 Peach latent mosaic viroid complete genome, isolate PC-C38 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUCUA hit 417 : 300 336 (fwd) 28.64 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: U 300 CACUGAUGAGUCUUUGAgaUAAGACGAAACUCUUCUA 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184700,sp|AJ550901.1|PLA550901 Peach latent mosaic viroid complete genome, isolate PC-C38 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUGU hit 418 : 37 2 (rev) 24.70 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C:: + U::G:CGAAAC:+ :GU 300 CACUGAUGAGCCUUUGCgaUAAGGCGAAACUUAUGU- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184701,sp|AJ550902.1|PLA550902 Peach latent mosaic viroid complete genome, isolate PC-C33 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUG hit 419 : 299 335 (fwd) 31.90 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 299 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184701,sp|AJ550902.1|PLA550902 Peach latent mosaic viroid complete genome, isolate PC-C33 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGAG hit 420 : 37 1 (rev) 27.52 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 300 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGAG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184702,sp|AJ550903.1|PLA550903 Peach latent mosaic viroid complete genome, isolate PC-C27 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUA hit 421 : 299 335 (fwd) 30.49 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 299 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUA 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184702,sp|AJ550903.1|PLA550903 Peach latent mosaic viroid complete genome, isolate PC-C27 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGG hit 422 : 37 1 (rev) 26.70 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 300 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184703,sp|AJ550904.1|PLA550904 Peach latent mosaic viroid complete genome, isolate PC-C29 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUA hit 423 : 299 335 (fwd) 30.49 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 299 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUA 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184703,sp|AJ550904.1|PLA550904 Peach latent mosaic viroid complete genome, isolate PC-C29 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGG hit 424 : 37 1 (rev) 26.70 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 300 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184704,sp|AJ550905.1|PLA550905 Peach latent mosaic viroid complete genome, isolate PC-C32 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUA hit 425 : 299 335 (fwd) 30.49 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 299 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUA 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184704,sp|AJ550905.1|PLA550905 Peach latent mosaic viroid complete genome, isolate PC-C32 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGG hit 426 : 37 1 (rev) 26.70 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 300 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184705,sp|AJ550906.1|PLA550906 Peach latent mosaic viroid complete genome, isolate PC-C36 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC hit 427 : 300 334 (fwd) 27.46 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA: :UC 300 CACUGAUGAGUCUCUGAgaUGAGACGAAACU--CUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184705,sp|AJ550906.1|PLA550906 Peach latent mosaic viroid complete genome, isolate PC-C36 ----isReversed: 1 ----hitSequence: CACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUGAA hit 428 : 37 1 (rev) 23.90 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC+: + U:+GACGAA+C:+ :G+ 312 CACUGAUGAGUCGCUGCgaUGCGACGAAACUUAUGAA 348 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184706,sp|AJ550907.1|PLA550907 Peach latent mosaic viroid complete genome, isolate PC-C42 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC hit 429 : 299 333 (fwd) 27.46 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA: :UC 299 CACUGAUGAGUCUCUGAgaUGAGACGAAACU--CUUC 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184706,sp|AJ550907.1|PLA550907 Peach latent mosaic viroid complete genome, isolate PC-C42 ----isReversed: 1 ----hitSequence: UACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUGAA hit 430 : 37 1 (rev) 23.60 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 ACUGAUGAGUC+: + U:+GACGAA+C:+ :G+ 312 UACUGAUGAGUCGCUGCgaUGCGACGAAACUUAUGAA 348 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184707,sp|AJ550908.1|PLA550908 Peach latent mosaic viroid complete genome, isolate PC-C30 ----isReversed: 0 ----hitSequence: CACUCAUGAGUCUCUGAGAUGAGACGAAACUCUUC hit 431 : 300 334 (fwd) 21.89 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACU AUGAGUC:: +A U::GACGAAA: :UC 300 CACUCAUGAGUCUCUGAgaUGAGACGAAACU--CUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184707,sp|AJ550908.1|PLA550908 Peach latent mosaic viroid complete genome, isolate PC-C30 ----isReversed: 1 ----hitSequence: CACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUGAA hit 432 : 37 1 (rev) 23.90 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC+: + U:+GACGAA+C:+ :G+ 313 CACUGAUGAGUCGCUGCgaUGCGACGAAACUUAUGAA 349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184708,sp|AJ550909.1|PLA550909 Peach latent mosaic viroid complete genome, isolate PC-C35 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAUGAGACGAAACUCUUC hit 433 : 300 333 (fwd) 28.50 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA: :UC 300 CACUGAUGAGUCUCUGAaUGAGACGAAACU--CUUC 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184708,sp|AJ550909.1|PLA550909 Peach latent mosaic viroid complete genome, isolate PC-C35 ----isReversed: 1 ----hitSequence: CACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUGAA hit 434 : 37 1 (rev) 22.45 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGU:+: + U:+:ACGAA+C:+ :G+ 312 CACUGAUGAGUUGCUGCgaUGCAACGAAACUUAUGAA 348 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184709,sp|AJ550910.1|PLA550910 Peach latent mosaic viroid complete genome, isolate PC-C37 ----isReversed: 0 ----hitSequence: CACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC hit 435 : 302 336 (fwd) 27.38 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAGUC:: +A U::GACGA:A: :UC 302 CACUGACGAGUCUCUGAgaUGAGACGAAACU--CUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184709,sp|AJ550910.1|PLA550910 Peach latent mosaic viroid complete genome, isolate PC-C37 ----isReversed: 1 ----hitSequence: CACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUGAA hit 436 : 37 1 (rev) 23.90 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC+: + U:+GACGAA+C:+ :G+ 315 CACUGAUGAGUCGCUGCgaUGCGACGAAACUUAUGAA 351 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184710,sp|AJ550911.1|PLA550911 Peach latent mosaic viroid complete genome, isolate PC-C28 ----isReversed: 0 ----hitSequence: CACUGACGAGUCUCUGAAAUGAGACGAAACUCUUC hit 437 : 301 335 (fwd) 27.38 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAGUC:: +A U::GACGA:A: :UC 301 CACUGACGAGUCUCUGAaaUGAGACGAAACU--CUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184710,sp|AJ550911.1|PLA550911 Peach latent mosaic viroid complete genome, isolate PC-C28 ----isReversed: 1 ----hitSequence: CACUGAUGAGUUGCUGAAACGCAACGAAACUUUUGGG hit 438 : 37 1 (rev) 25.40 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGU:+: +A :+:ACGAA C:+U:G 313 CACUGAUGAGUUGCUGAaaCGCAACGAAACUUUUGGG 349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184711,sp|AJ550912.1|PLA550912 Peach latent mosaic viroid complete genome, isolate PC-C40 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUAAA hit 439 : 301 337 (fwd) 24.84 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA+ :CU: + 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUAAA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184711,sp|AJ550912.1|PLA550912 Peach latent mosaic viroid complete genome, isolate PC-C40 ----isReversed: 1 ----hitSequence: CACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUGAG hit 440 : 37 1 (rev) 27.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGU:+: +A U:+:ACGAA+C:+U:G+ 313 CACUGAUGAGUUGCUGAgaUGCGACGAAACUUUUGAG 349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184721,sp|AJ005294.1|PLMAJ5294 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds2 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 441 : 300 336 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184721,sp|AJ005294.1|PLMAJ5294 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds2 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 442 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184722,sp|AJ005295.1|PLMAJ5295 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds21 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 443 : 300 336 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184722,sp|AJ005295.1|PLMAJ5295 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds21 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAA hit 444 : 37 1 (rev) 27.77 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184723,sp|AJ005296.1|PLMAJ5296 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds15 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGUC hit 445 : 301 337 (fwd) 36.50 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAAC:CU:GUC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184723,sp|AJ005296.1|PLMAJ5296 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds15 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 446 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184724,sp|AJ005297.1|PLMAJ5297 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds23 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGUC hit 447 : 301 337 (fwd) 36.50 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAAC:CU:GUC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184724,sp|AJ005297.1|PLMAJ5297 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds23 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 448 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184725,sp|AJ005298.1|PLMAJ5298 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds18 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGUC hit 449 : 301 337 (fwd) 36.50 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAAC:CU:GUC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184725,sp|AJ005298.1|PLMAJ5298 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds18 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 450 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184726,sp|AJ005299.1|PLMAJ5299 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds1 ----isReversed: 0 ----hitSequence: CACUGAUGAAUCUCUGAAAUGAGACGAAACUCUUGCC hit 451 : 301 337 (fwd) 26.11 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGA:UC:: +A U::GA:GAA C:CU:G C 301 CACUGAUGAAUCUCUGAaaUGAGACGAAACUCUUGCC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184726,sp|AJ005299.1|PLMAJ5299 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds1 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 452 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184727,sp|AJ005300.1|PLMAJ5300 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds3 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGCC hit 453 : 301 337 (fwd) 31.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA C:CU:G C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGCC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184727,sp|AJ005300.1|PLMAJ5300 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds3 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 454 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184728,sp|AJ005301.1|PLMAJ5301 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds19 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGAC hit 455 : 301 337 (fwd) 33.46 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA+C:CU:G+C 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGAC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184728,sp|AJ005301.1|PLMAJ5301 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds19 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 456 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184729,sp|AJ005302.1|PLMAJ5302 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds 13 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAUUGAGACGAAACUCUUGAC hit 457 : 300 336 (fwd) 33.46 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA+C:CU:G+C 300 CACUGAUGAGUCUCUGAauUGAGACGAAACUCUUGAC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184729,sp|AJ005302.1|PLMAJ5302 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds 13 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 458 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184730,sp|AJ005303.1|PLMAJ5303 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds6 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGAC hit 459 : 300 336 (fwd) 33.46 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA+C:CU:G+C 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGAC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184730,sp|AJ005303.1|PLMAJ5303 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds6 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUGAG hit 460 : 37 1 (rev) 29.17 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUUUGAG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184731,sp|AJ005304.1|PLMAJ5304 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds16 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUA hit 461 : 299 335 (fwd) 30.49 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 299 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUA 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184731,sp|AJ005304.1|PLMAJ5304 Peach latent mosaic viroid, a hammerhead structure RNA, isolate D168, variant gds16 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGAG hit 462 : 37 1 (rev) 27.52 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+ :G+ 300 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGAG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184732,sp|AJ005305.1|PLMAJ5305 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc8 ----isReversed: 0 ----hitSequence: CACUGACGAGUCUCUGAAAUGAGACGAAACUCUUCUC hit 463 : 301 337 (fwd) 32.68 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAGUC:: +A U::GACGA:A :CU: UC 301 CACUGACGAGUCUCUGAaaUGAGACGAAACUCUUCUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184732,sp|AJ005305.1|PLMAJ5305 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc8 ----isReversed: 1 ----hitSequence: CACUGACGAGCCGCUGGGAUACGGCGAAACUUUUGA hit 464 : 37 2 (rev) 25.13 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAG:C+C + UA+G:CGA:+C:+U:G+ 301 CACUGACGAGCCGCUGGgaUACGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184733,sp|AJ005306.1|PLMAJ5306 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc 76906, variant esc16 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 465 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184733,sp|AJ005306.1|PLMAJ5306 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc 76906, variant esc16 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 466 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184734,sp|AJ005307.1|PLMAJ5307 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc5 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 467 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184734,sp|AJ005307.1|PLMAJ5307 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc5 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 468 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184735,sp|AJ005308.1|PLMAJ5308 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc12 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 469 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184735,sp|AJ005308.1|PLMAJ5308 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc12 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 470 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184736,sp|AJ005309.1|PLMAJ5309 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc10 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 471 : 300 336 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184736,sp|AJ005309.1|PLMAJ5309 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc10 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 472 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 300 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184737,sp|AJ005310.1|PLMAJ5310 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc14 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 473 : 300 336 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184737,sp|AJ005310.1|PLMAJ5310 Peach latent mosaic viroid, a hammerhead structure RNA, isolate Esc76906, variant esc14 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 474 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 300 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184738,sp|AJ005311.1|PLMAJ5311 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls4b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 475 : 300 336 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184738,sp|AJ005311.1|PLMAJ5311 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls4b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 476 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 300 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184739,sp|AJ005312.1|PLMAJ5312 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls16b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUAUGAAAUGAGACGAAACUCAUAUC hit 477 : 301 337 (fwd) 27.65 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC: +A U :GACGAAA :C : UC 301 CACUGAUGAGUCUAUGAaaUGAGACGAAACUCAUAUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184739,sp|AJ005312.1|PLMAJ5312 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls16b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCUAAACUUUUGA hit 478 : 37 2 (rev) 22.89 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUG:G:C+: +A U:+G:C:AA+C:+U:G+ 301 CACUGAUGAGCCGCUGAaaUGCGGCUAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184740,sp|AJ005313.1|PLMAJ5313 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls17b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUA hit 479 : 300 336 (fwd) 30.49 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::U 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUA 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184740,sp|AJ005313.1|PLMAJ5313 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls17b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGG hit 480 : 37 1 (rev) 26.70 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184741,sp|AJ005314.1|PLMAJ5314 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls1 ----isReversed: 0 ----hitSequence: CACUGACGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 481 : 300 336 (fwd) 34.77 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAGUC:: +A U::GACGA:A::CU::UC 300 CACUGACGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184741,sp|AJ005314.1|PLMAJ5314 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls1 ----isReversed: 1 ----hitSequence: CACUGACGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 482 : 37 1 (rev) 30.48 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAG:C+: +A U:+G:CGA:AC:+ :GU 301 CACUGACGAGCCGUUGAgaUACGGCGAAACUUAUGUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184742,sp|AJ005315.1|PLMAJ5315 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls18b ----isReversed: 0 ----hitSequence: CACUGACGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 483 : 300 336 (fwd) 34.77 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAGUC:: +A U::GACGA:A::CU::UC 300 CACUGACGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184742,sp|AJ005315.1|PLMAJ5315 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls18b ----isReversed: 1 ----hitSequence: CACUGACGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 484 : 37 1 (rev) 30.48 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAG:C+: +A U:+G:CGA:AC:+ :GU 301 CACUGACGAGCCGUUGAgaUACGGCGAAACUUAUGUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184743,sp|AJ005316.1|PLMAJ5316 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls11 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 485 : 300 336 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 300 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184743,sp|AJ005316.1|PLMAJ5316 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls11 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 486 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 301 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184744,sp|AJ005317.1|PLMAJ5317 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls8 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAAUGAGACGAAACUCUUUUC hit 487 : 300 337 (fwd) 33.81 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 300 CACUGAUGAGUCUCUGAaaaUGAGACGAAACUCUUUUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184744,sp|AJ005317.1|PLMAJ5317 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls8 ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 488 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 302 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184745,sp|AJ005318.1|PLMAJ5318 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls19b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 489 : 298 334 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 298 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184745,sp|AJ005318.1|PLMAJ5318 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls19b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGUGAAACUUAUGUG hit 490 : 37 1 (rev) 25.92 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGA :C+: +A U:+G: GAAAC:+ :GU 299 CACUGAUGAGCCGUUGAgaUACGGUGAAACUUAUGUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184746,sp|AJ005319.1|PLMAJ5319 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35 variant ls5b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 491 : 298 334 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 298 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184746,sp|AJ005319.1|PLMAJ5319 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35 variant ls5b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 492 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 299 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184747,sp|AJ005320.1|PLMAJ5320 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls11b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 493 : 299 335 (fwd) 34.85 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA::CU::UC 299 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUUUC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184747,sp|AJ005320.1|PLMAJ5320 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls11b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 494 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 300 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184748,sp|AJ005321.1|PLMAJ5321 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls6b ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUGAC hit 495 : 299 335 (fwd) 33.46 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAA+C:CU:G+C 299 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUGAC 335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184748,sp|AJ005321.1|PLMAJ5321 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls6b ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGUG hit 496 : 37 1 (rev) 30.56 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAAAC:+ :GU 300 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGUG 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184749,sp|AJ005322.1|PLMAJ5322 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls14b ----isReversed: 0 ----hitSequence: CACUGACGAGUCUCUGAAAUGAGACGAAACUCUUUUC hit 497 : 300 336 (fwd) 34.77 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAGUC:: +A U::GACGA:A::CU::UC 300 CACUGACGAGUCUCUGAaaUGAGACGAAACUCUUUUC 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184749,sp|AJ005322.1|PLMAJ5322 Peach latent mosaic viroid, a hammerhead structure RNA, isolate LS35, variant ls14b ----isReversed: 1 ----hitSequence: CACUGACGAGCCGUUGAGAUACGGCGAAACUUAUGGA hit 498 : 37 1 (rev) 25.21 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAG:C+: +A U:+G:CGA: C:+ :G 301 CACUGACGAGCCGUUGAgaUACGGCGAAACUUAUGGA 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184751,sp|M83545.1|PLQSEQ Peach latent mosaic viroid hammerhead structure RNA sequence. ----isReversed: 0 ----hitSequence: CACUGACGAGUCUCUGAGAUGAGACGAAACUCUUCU hit 499 : 301 336 (fwd) 27.52 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAGUC:: +A U::GACGA:A :CU: U 301 CACUGACGAGUCUCUGAgaUGAGACGAAACUCUUCU- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #184751,sp|M83545.1|PLQSEQ Peach latent mosaic viroid hammerhead structure RNA sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGUCGCUGAAAUGCGACGAAACUUAUGAC hit 500 : 37 1 (rev) 31.60 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC+: +A U:+GACGAA+C:+ :G+C 301 CACUGAUGAGUCGCUGAaaUGCGACGAAACUUAUGAC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #189565,sp|M21212.1|SAM300CG Arabis mosaic virus small satellite RNA, complete genome. ----isReversed: 0 ----hitSequence: ACCUGACGAUGGCCCAAAAGGGCCGAAACAGUACUG hit 501 : 17 52 (fwd) 29.71 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGA:GA G:CC:AAA+:GG:CGA:A :+U: U 17 ACCUGACGAuGGCCCAAAAGGGCCGAAACAGUACUG 52 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #191995,sp|M33000.1|SUVSATA Subterranean clover mottle virus satellite RNA (virusoid) sequence. ----isReversed: 0 ----hitSequence: CACUGACGAGUCCCUAAAGGACGAAACAGCGCAC hit 502 : 79 112 (fwd) 24.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAGUCCC A +AGGACGA:+ + +C 79 CACUGACGAGUCCCUA-AAGGACGAAACAGCGCAC 112 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #191996,sp|M33001.1|SUVSATB Subterranean clover mottle virus satellite RNA sequence. ----isReversed: 0 ----hitSequence: CACUGACGAGUCCCUAAAGGACGAAACAGCGCAC hit 503 : 80 113 (fwd) 24.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAGUCCC A +AGGACGA:+ + +C 80 CACUGACGAGUCCCUA-AAGGACGAAACAGCGCAC 113 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #193436,sp|M14879.1|TRSSATA Tobacco ringspot virus satellite RNA. ----isReversed: 0 ----hitSequence: GUCUGAUGAGUCCGUGAGGACGAAACAGGACUGUC hit 504 : 18 52 (fwd) 24.90 bits ::::::<<<<<<<<____>>>>>>>><<<__..>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu..cGUC 35 CUGAUGAGUCC: :GGACGAAAC:++ :GUC 18 GUCUGAUGAGUCCGU--GAGGACGAAACAGGacUGUC 52 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #193437,sp|M17439.1|TRSSTO01 Tobacco ringspot virus (TobRV) mRNA. ----isReversed: 0 ----hitSequence: GUCUGAUGAGUCCGUGAGGACGAAACAGGACUGUC hit 505 : 18 52 (fwd) 24.90 bits ::::::<<<<<<<<____>>>>>>>><<<__..>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu..cGUC 35 CUGAUGAGUCC: :GGACGAAAC:++ :GUC 18 GUCUGAUGAGUCCGU--GAGGACGAAACAGGacUGUC 52 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #193438,sp|M31515.1|TRSSTOBA Tobacco ringspot virus (STobRV) autolytic junction. ----isReversed: 1 ----hitSequence: GUCUGAUGAGUCCGUGAGGACGAAACAGGACUGUC hit 506 : 68 34 (rev) 24.90 bits ::::::<<<<<<<<____>>>>>>>><<<__..>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu..cGUC 35 CUGAUGAGUCC: :GGACGAAAC:++ :GUC 4 GUCUGAUGAGUCCGU--GAGGACGAAACAGGacUGUC 38 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #195785,sp|D00685.1|UTSSR Chicory yellow mottle virus small satellite RNA. ----isReversed: 0 ----hitSequence: GCCUGAUGAGUCCGAAAGGACGAAACAGUACUG hit 507 : 17 49 (fwd) 28.85 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAGUCC:A +:GGACGAAA :+U: U 17 GCCUGAUGAGUCCGA--AAGGACGAAACAGUACUG 49 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #196192,sp|J02439.1|VTMOVR2 Velvet tobacco mottle virus Satellite RNA complete sequence. ----isReversed: 0 ----hitSequence: CUCUGAUGAGUCCGAAAGGACGAAACGGAUGUA hit 508 : 65 97 (fwd) 27.66 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGAGUCC:A +:GGACGAAAC:+ :GU 65 CUCUGAUGAGUCCGA--AAGGACGAAACGGAUGUA 97 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #4926,sp|AC139725.3|AC139725 Danio rerio clone CH211-212J17 strain Tue, complete sequence. ----isReversed: 0 ----hitSequence: ACCUGAUGAAGACCAUGCAGGUCGAAACAUUGUG hit 509 : 187035 187068 (fwd) 19.56 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA G:CC+ + +GG:CGAAAC:+ :GU 187035 ACCUGAUGAaGACCAUG-CAGGUCGAAACAU-UGUG 187068 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #4951,sp|AC144710.2|AC144710 Danio rerio clone CH211-215E4, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAAGACCUUGUAGGUCGAAACAUUGU hit 510 : 158682 158714 (fwd) 21.55 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA G:CC: + U:GG:CGAAAC:+ :GU 158682 CACUGAUGAaGACCUUG-UAGGUCGAAACAU-UGU- 158714 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #23917,sp|AL731788.8|AL731788 Zebrafish DNA sequence from clone RP71-1G13 in linkage group 12 Contains part of a novel gene, a novel gene similar to PTEN (phosphatase and tensin homolog), a novel LINE element with a potentially active ORF1 and four CpG islands. ----isReversed: 1 ----hitSequence: ACCUGACGAAGACCAUGUAGGUCGAAACCUUGUG hit 511 : 156511 156478 (rev) 24.06 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGA:GA G:CC+ + U+GG:CGA:AC++U GU 9399 ACCUGACGAaGACCAUG-UAGGUCGAAACCUU-GUG 9432 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24007,sp|AL808108.3|AL808108 Zebrafish DNA sequence from clone CH211-240L14 Contains two novel genes, a novel gene similar to human GRHPR (glyoxylate reductase/hydroxypyruvate reductase), a novel gene similar to human C4orf1 (chromosome 4 open reading frame 1) and three CpG islands. ----isReversed: 1 ----hitSequence: AACUGAUGAAUGCAGAAAUGAAAGAAACACUUGUG hit 512 : 146640 146606 (rev) 21.51 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGA:U C AA+ G A:GAAAC:CU:GU 23917 AACUGAUGAAUGCAGAAAUGAAAGAAACACUUGUG 23951 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24017,sp|AL831791.5|AL831791 Zebrafish DNA sequence from clone DKEY-76P14 in linkage group 11 Contains a novel gene similar to human and rodent RRAD (Ras-related protein associated with diabetes), a novel gene, a novel gene similar to mouse PNP (purine-nucleoside phosphorylase), a novel gene similar to human and rodent SOX11 (SRY (sex determining region Y)-box 11) and a CpG island. ----isReversed: 1 ----hitSequence: ACCUGAUGAAGACCAUGUCGGUCGAAACGUAGUG hit 513 : 176188 176155 (rev) 19.60 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA G:CC + U GG:CGAAAC:+ :GU 28311 ACCUGAUGAaGACCAUG-UCGGUCGAAACGU-AGUG 28344 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24081,sp|AL845369.7|AL845369 Zebrafish DNA sequence from clone CH211-12E13 in linkage group 5 ----isReversed: 1 ----hitSequence: ACCUGAUGAAGACCAUGUCGGUCGAAACGUAGUG hit 514 : 190782 190749 (rev) 19.60 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA G:CC + U GG:CGAAAC:+ :GU 200 ACCUGAUGAaGACCAUG-UCGGUCGAAACGU-AGUG 233 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24406,sp|AL935041.4|AL935041 Zebrafish DNA sequence from clone CH211-172J16 ----isReversed: 1 ----hitSequence: ACCUGAUGAAGACCAUGUAGGUUGAAACGUUGUC hit 515 : 37284 37251 (rev) 19.89 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA :CC+ + U+GG: GAAAC:+ :GUC 118570 ACCUGAUGAaGACCAUG-UAGGUUGAAACGU-UGUC 118603 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24451,sp|AL935187.13|AL935187 Zebrafish DNA sequence from clone DKEY-97C7 in linkage group 18 ----isReversed: 1 ----hitSequence: GUCUGAUGAAGAGCCAGGUGGCUCGAAACGUUUC hit 516 : 145742 145709 (rev) 20.12 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGA G:+C:A+ U:G+:CGAAA:: ::UC 117776 GUCUGAUGAaGAGCCAGGUGGCUCGAAACG--UUUC 117809 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24467,sp|AL935205.13|AL935205 Zebrafish DNA sequence from clone CH211-233F15 ----isReversed: 0 ----hitSequence: ACCUGAUGAAGACCAUGUCGGUCGAAACGUAGUG hit 517 : 149115 149148 (fwd) 19.60 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA G:CC + U GG:CGAAAC:+ :GU 149115 ACCUGAUGAaGACCAUG-UCGGUCGAAACGU-AGUG 149148 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24467,sp|AL935205.13|AL935205 Zebrafish DNA sequence from clone CH211-233F15 ----isReversed: 1 ----hitSequence: ACCUGAUGAAGACCAUGUCGGUCGAAACGUAGUG hit 518 : 146864 146831 (rev) 19.60 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA G:CC + U GG:CGAAAC:+ :GU 3778 ACCUGAUGAaGACCAUG-UCGGUCGAAACGU-AGUG 3811 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #24659,sp|AL954834.12|AL954834 Zebrafish DNA sequence from clone CH211-286D20 ----isReversed: 0 ----hitSequence: ACCUGAUGAAGACCAUGUCGGUCGAAACGUAGUG hit 519 : 87644 87677 (fwd) 19.60 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA G:CC + U GG:CGAAAC:+ :GU 87644 ACCUGAUGAaGACCAUG-UCGGUCGAAACGU-AGUG 87677 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25275,sp|L05837.1|ATSAT2A Amphiuma tridactylum satellite 2 repetitive element, clone pAtri C. ----isReversed: 0 ----hitSequence: CACUGAUGAUGCCCAAUGAGGCUGAAACGUGUUUG hit 520 : 9 43 (fwd) 27.14 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA::CCCAA AGG::GAAA::++::U 9 CACUGAUGAUGCCCAAUGAGGCUGAAACGUGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25276,sp|L05854.1|ATSAT2A1 Ambystoma talpoideum satellite 2 repetitive element, clone pAtal 6. ----isReversed: 0 ----hitSequence: CACUGAUGAGGCCUAACAAGGCUGAAACAUGUUUG hit 521 : 9 43 (fwd) 27.55 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA :CC:AA +:GG: GAAA::++::U 9 CACUGAUGAGGCCUAACAAGGCUGAAACAUGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25278,sp|L05855.1|ATSAT2B1 Ambystoma talpoideum satellite 2 repetitive element, clone pAtal 1. ----isReversed: 0 ----hitSequence: CACUGAUGAGGCCCAACAAGGUCAAAACAUGUUUG hit 522 : 9 43 (fwd) 23.09 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUG G CCCAA +AGG C AAA::++::U 9 CACUGAUGAGGCCCAACAAGGUCAAAACAUGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25279,sp|L05839.1|ATSAT2C Amphiuma tridactylum satellite 2 repetitive element, clone pAtri H. ----isReversed: 0 ----hitSequence: CACUGAUGAUGCCCAAUGAGGCUGAAACGCGUUUG hit 523 : 9 43 (fwd) 27.65 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA::CCCAA AGG::GAAA::C+::U 9 CACUGAUGAUGCCCAAUGAGGCUGAAACGCGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25280,sp|L05856.1|ATSAT2C1 Ambystoma talpoideum satellite 2 repetitive element, clone pAtal 7. ----isReversed: 0 ----hitSequence: CACUGAUGAGGCCCAACAAGGCCGAAACAUGUUUG hit 524 : 9 43 (fwd) 33.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAG:CCCAA +AGG:CGAAA::++::U 9 CACUGAUGAGGCCCAACAAGGCCGAAACAUGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25282,sp|L05857.1|ATSAT2D1 Ambystoma talpoideum satellite 2 repetitive element, clone pAtal 3. ----isReversed: 0 ----hitSequence: CACUGAUGAGGCCCAACAAGGCUGAAACAUGUUUG hit 525 : 9 43 (fwd) 28.51 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA :CCCAA +AGG: GAAA::++::U 9 CACUGAUGAGGCCCAACAAGGCUGAAACAUGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25283,sp|L05841.1|ATSAT2E Amphiuma tridactylum satellite 2 repetitive element, clone pAtri D. ----isReversed: 0 ----hitSequence: CACUGAUGAUGCCCAAUGAGGCUGAAACGCGUUUG hit 526 : 9 43 (fwd) 27.65 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA::CCCAA AGG::GAAA::C+::U 9 CACUGAUGAUGCCCAAUGAGGCUGAAACGCGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25286,sp|L05859.1|ATSAT2F1 Ambystoma talpoideum satellite 2 repetitive element, clone Atalcon. ----isReversed: 0 ----hitSequence: CACUGAUGAGGCCCAACAAGGCUGAAACAUGUUUG hit 527 : 9 43 (fwd) 28.51 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA :CCCAA +AGG: GAAA::++::U 9 CACUGAUGAGGCCCAACAAGGCUGAAACAUGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25287,sp|L05843.1|ATSAT2G Amphiuma tridactylum satellite 2 repetitive element, clone pAtri I. ----isReversed: 0 ----hitSequence: CACUGAUGAUGCCCAAUGAGGCCAAAACAUGUC hit 528 : 9 41 (fwd) 20.79 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUG ::CCCAA AGG:: AAAC: :GUC 9 CACUGAUGAUGCCCAAUGAGGCCAAAACA--UGUC 41 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25289,sp|L05844.1|ATSAT2H Amphiuma tridactylum satellite 2 repetitive element, clone pAtri E. ----isReversed: 0 ----hitSequence: CACUGAUGAUGCCCAAUGAGGCUGAAAUGCGUC hit 529 : 9 41 (fwd) 25.62 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA::CCCAA AGG::GAAA G C UC 9 CACUGAUGAUGCCCAAUGAGGCUGAAAUG--CGUC 41 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25290,sp|L05861.1|ATSAT2H1 Ambystoma talpoideum satellite 2 repetitive element, clone pAtal 2. ----isReversed: 0 ----hitSequence: CACUGAUGAGGCCCAACAAGGCCGAAACAUGUUUG hit 530 : 9 43 (fwd) 33.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAG:CCCAA +AGG:CGAAA::++::U 9 CACUGAUGAGGCCCAACAAGGCCGAAACAUGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25291,sp|L05845.1|ATSAT2I Amphiuma tridactylum satellite 2 repetitive element, clone pAtri G. ----isReversed: 0 ----hitSequence: CACUGAUGAUGCCAAUGAGGCUGAAACGCGUC hit 531 : 9 40 (fwd) 26.25 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA::CC+A +GG::GAAACG CGUC 9 CACUGAUGAUGCCAAU-GAGGCUGAAACG--CGUC 40 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25292,sp|L05862.1|ATSAT2I1 Ambystoma talpoideum satellite 2 repetitive element, clone pAtal 8. ----isReversed: 0 ----hitSequence: CACUGAUGACGCCCAACCAGGCUGAAACAUGUC hit 532 : 9 41 (fwd) 25.78 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA :CCCAA AGG: GAAAC: :GUC 9 CACUGAUGACGCCCAACCAGGCUGAAACA--UGUC 41 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25296,sp|L05864.1|ATSAT2K1 Ambystoma talpoideum satellite 2 repetitive element, clone pAtal 4. ----isReversed: 0 ----hitSequence: CACUGAUGAGGCCCAACAAGGCUGAAACAUGUUUG hit 533 : 9 43 (fwd) 28.51 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA :CCCAA +AGG: GAAA::++::U 9 CACUGAUGAGGCCCAACAAGGCUGAAACAUGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25301,sp|L05850.1|ATSAT2N Amphiuma tridactylum satellite 2 repetitive element, clone pAtri J. ----isReversed: 0 ----hitSequence: CACUGAUGAUGCCCAAUGAGGCUGAAACGCGUUUG hit 534 : 9 43 (fwd) 27.65 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA::CCCAA AGG::GAAA::C+::U 9 CACUGAUGAUGCCCAAUGAGGCUGAAACGCGUUUG 43 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25303,sp|L05851.1|ATSAT2O Amphiuma tridactylum satellite 2 repetitive element, clone pAtri F. ----isReversed: 0 ----hitSequence: CACUGAUGACGCCCAAUGAGGCUGAAACGCGUC hit 535 : 9 41 (fwd) 29.23 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA :CCCAA AGG: GAAACG CGUC 9 CACUGAUGACGCCCAAUGAGGCUGAAACG--CGUC 41 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #25305,sp|L05853.1|ATSAT2Q Amphiuma tridactylum satellite 2 repetitive element, clone Atricon. ----isReversed: 0 ----hitSequence: CACUGAUGAUGCCCAAUGAGGCUGAAACGCGUC hit 536 : 9 41 (fwd) 31.01 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA::CCCAA AGG::GAAACG CGUC 9 CACUGAUGAUGCCCAAUGAGGCUGAAACG--CGUC 41 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #28842,sp|AY157749.1|AY157749 Ambystoma tigrinum stebbinsi clone ATS4-25 microsatellite sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAUACCUAAAAAGGGUGAAACUAGGC hit 537 : 467 435 (rev) 22.21 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA: CC:AAA+:GG :GAA C G C 204 CACUGAUGAUACCUAAAAAGGGUGAAACU--AGGC 236 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #36016,sp|Y17693.1|BMU17693 Bungarus multicinctus gene encoding alpha-bungarotoxin, V31 variant ----isReversed: 1 ----hitSequence: AGCUGACGAGAGCUAAGUAGCUCGAAAUAGAUC hit 538 : 1973 1941 (rev) 24.26 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG:+C:AA U:G+:CGA:A: :UC 953 AGCUGACGAGAGCUAAGUAGCUCGAAAUA--GAUC 985 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #36016,sp|Y17693.1|BMU17693 Bungarus multicinctus gene encoding alpha-bungarotoxin, V31 variant ----isReversed: 1 ----hitSequence: AGCUGACGAGAGCUAAGUAGUUCGAAAUAGAUC hit 539 : 1642 1610 (rev) 21.80 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG: C:AA U:G :CGA:A: :UC 1284 AGCUGACGAGAGCUAAGUAGUUCGAAAUA--GAUC 1316 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #36017,sp|Y17694.1|BMU17694 Bungarus multicinctus gene encoding alpha-bungarotoxin, A31 variant ----isReversed: 1 ----hitSequence: AGCUGACGAGAGCUAAGUAGCUCGAAAUAGAUC hit 540 : 1966 1934 (rev) 24.26 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG:+C:AA U:G+:CGA:A: :UC 959 AGCUGACGAGAGCUAAGUAGCUCGAAAUA--GAUC 991 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #36017,sp|Y17694.1|BMU17694 Bungarus multicinctus gene encoding alpha-bungarotoxin, A31 variant ----isReversed: 1 ----hitSequence: AGCUGACGAGAGCUAAGUAGUUCGAAAUAGAUC hit 541 : 1641 1609 (rev) 21.80 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG: C:AA U:G :CGA:A: :UC 1284 AGCUGACGAGAGCUAAGUAGUUCGAAAUA--GAUC 1316 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #36635,sp|BX296516.3|BX296516 Zebrafish DNA sequence from clone DKEY-219E20 in linkage group 20 ----isReversed: 1 ----hitSequence: AGCUGAAGCGUGUUUUACAACGACGAAACGCGCUUC hit 542 : 45508 45473 (rev) 19.74 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA G:GU :: A +:: AC:A A:GC+C:UC 115048 AGCUGAAGCGUGUUUUAcAACGACGAAACGCGCUUC 115083 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #36707,sp|U37321.1|CA37321 Cryptobranchus alleganiensis satellite 2 repetitive DNA element cas2hhc. ----isReversed: 0 ----hitSequence: AUCUGACGAGGUCCAGAGAGACCGAAACGCGUC hit 543 : 37 69 (fwd) 34.47 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGA:GAG::CCA+A AG::CGA:ACG CGUC 37 AUCUGACGAGGUCCAGAGAGACCGAAACG--CGUC 69 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #37594,sp|U37315.1|CP37315 Cynops pyrrhogaster satellite 2 repetitive DNA element cps2-1hhc. ----isReversed: 0 ----hitSequence: GGCUGAUGAGGGUUAUGAACCCGAAACCGGUC hit 544 : 36 67 (fwd) 23.60 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGAG:+::A ::+:CGAAAC++ GUC 36 GGCUGAUGAGGGUUAU-GAACCCGAAACCG--GUC 67 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #37595,sp|U37317.1|CP37317 Cynops pyrrhogaster satellite 2 repetitive DNA element cps2-2hhc. ----isReversed: 0 ----hitSequence: GGCUGAUGAGGGGUGAAACCCCGAAACCGGUC hit 545 : 36 67 (fwd) 24.30 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGAG:++: A +:++:CGAAAC++ GUC 36 GGCUGAUGAGGGGUGA-AACCCCGAAACCG--GUC 67 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #37772,sp|U37320.1|DA37320 Desmognathus apalachicolae satellite 2 repetitive DNA element das2hhc. ----isReversed: 0 ----hitSequence: UACUGAUGAUGGCCCAACAAGGCCGAAACCGGUC hit 546 : 38 71 (fwd) 31.26 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUGA G:CCCAA +AGG:CGAAAC++ GUC 38 UACUGAUGAuGGCCCAACAAGGCCGAAACCG--GUC 71 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #38500,sp|U37316.1|EL37316 Eurycea longicauda satellite 2 repetitive DNA element els2hhc. ----isReversed: 0 ----hitSequence: CACUGAGGAGGCCCAACAAGGCCGAAACCGGUC hit 547 : 37 69 (fwd) 31.02 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG:CCCAA +AGG:CGA:AC++ GUC 37 CACUGAGGAGGCCCAACAAGGCCGAAACCG--GUC 69 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #44649,sp|U37319.1|NM37319 Necturus maculosus satellite 2 repetitive DNA element nms2hhc. ----isReversed: 0 ----hitSequence: CACUGACGAUGCCCAAUGAGGCUGAAACGCGUC hit 548 : 37 69 (fwd) 30.93 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GA::CCCAA AGG::GA:ACG CGUC 37 CACUGACGAUGCCCAAUGAGGCUGAAACG--CGUC 69 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #44759,sp|X04478.1|NVSAT2R Notophthalmus viridescens satellite 2 DNA ----isReversed: 0 ----hitSequence: AGCUGAUGAAGGGUGAUACCCUGAAACCGGUC hit 549 : 8 39 (fwd) 19.60 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGA::++: A U:++::GAAAC++ GUC 8 AGCUGAUGAAGGGUGA-UACCCUGAAACCG--GUC 39 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #46149,sp|U37318.1|PG37318 Plethodon glutinosus satellite 2 repetitive DNA element pgs2hhc. ----isReversed: 0 ----hitSequence: UACUGAUGAGGCCCAACAAGGCCGAAACCGGUC hit 550 : 37 69 (fwd) 34.44 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUGAG:CCCAA +AGG:CGAAAC++ GUC 37 UACUGAUGAGGCCCAACAAGGCCGAAACCG--GUC 69 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz ----sequence: #47355,sp|S70930.1|S70930 activin receptor [Xenopus laevis, mRNA, 2315 nt]. ----isReversed: 1 ----hitSequence: UUCUGACGUGUUUAAAAAAAAAAAAAACAGGUGUC hit 551 : 2049 2015 (rev) 21.73 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA:G: U::+AAA++::A :A:AC:++:GUC 267 UUCUGACGUGUUUAAAAAAAAAAAAAACAGGUGUC 301 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #6099,sp|AB063814.1|AB063814 Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H164. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 552 : 245 279 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 245 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #6102,sp|AB063817.1|AB063817 Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H167. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 553 : 245 279 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 245 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #7459,sp|AB067165.1|AB067165 Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:ya0044h. ----isReversed: 0 ----hitSequence: AACUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 554 : 245 279 (fwd) 22.38 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GAG C: A+AU :G CGA:ACG+ CGUC 245 AACUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #7465,sp|AB067171.1|AB067171 Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:ya0050h. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 555 : 245 279 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 245 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9601,sp|AC003035.1|AC003035 Homo sapiens Xp22 PAC RPCI1-122K4 (Roswell Park Cancer Institute Human PAC Library) complete sequence. ----isReversed: 1 ----hitSequence: CACUGACGAGGCCUAUAGGCAAGGCAGAGACUGAGUC hit 556 : 60625 60589 (rev) 19.64 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 +ACUGA:GA :CC:A A +:GG: GA:AC + GUC 115874 CACUGACGAGGCCUAUAggcAAGGCAGAGACUG-AGUC 115910 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum01.dat.fasta.gz ----sequence: #9779,sp|AC004057.1|AC004057 Homo sapiens chromosome 4 clone B240N9 map 4q25, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGCUUUCCAGUUAGUAGAAAACAGUUUUC hit 557 : 2362 2328 (rev) 19.90 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUG::U CCA+ UAG A::AAA::+U::UC 150437 CACUGAUGCUUUCCAGUUAGUAGAAAACAGUUUUC 150471 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #888,sp|AC005754.1|AC005754 Homo sapiens chromosome 5, BAC clone 34j15 (LBNL H169), complete sequence. ----isReversed: 0 ----hitSequence: UGCUGAUGAUAACCAGAAAGUUUGAAACACUAUUC hit 558 : 20062 20096 (fwd) 29.50 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGA:::CCA+A+AG:::GAAA::CU::UC 20062 UGCUGAUGAUAACCAGAAAGUUUGAAACACUAUUC 20096 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1309,sp|AC006406.1|AC006406 Homo sapiens, clone hRPK.25_A_1, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAAGAGAAGGAAAUACUUCCAAACUUGUUUC hit 559 : 123464 123498 (fwd) 24.64 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA G G::+:AAAU:+::C A A::++::UC 123464 AACUGAAGAGAAGGAAAUACUUCCAAACUUGUUUC 123498 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1317,sp|AC006440.9|AC006440 Homo sapiens chromosome 17, clone RP11-115N5, complete sequence. ----isReversed: 0 ----hitSequence: AGGUGAGGAGUUUCAAAAAAAGCGAAACAGGCUUC hit 560 : 88717 88751 (fwd) 22.22 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+ UGA:GAG ::CAAA+A:: CGA:A::++::UC 88717 AGGUGAGGAGUUUCAAAAAAAGCGAAACAGGCUUC 88751 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #1542,sp|AC007106.6|AC007106 Homo sapiens chromosome 4 clone C0383J20 map 4p16, complete sequence. ----isReversed: 1 ----hitSequence: AAUUGAUGAGCUGCAAAGAAAGCGAGAAUUUUUUC hit 561 : 119980 119946 (rev) 19.50 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AA UGA GAG:: CAAA A ::CGA A::+U::UC 52209 AAUUGAUGAGCUGCAAAGAAAGCGAGAAUUUUUUC 52243 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2119,sp|AC008407.4|AC008407 Homo sapiens chromosome 5 clone CTC-278A2, complete sequence. ----isReversed: 1 ----hitSequence: AACUGUUGAGUUUUAAAUAAAAGGAAACCUAUC hit 562 : 75620 75588 (rev) 20.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUG UGA U:::AAAU:::A GAAA ++ UC 3230 AACUGUUGAGUUUUAAAUAAAAGGAAACCU--AUC 3262 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2129,sp|AC008420.6|AC008420 Homo sapiens chromosome 5 clone CTC-296F5, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGAGUUCUUGAAUGAUCGCAAGAGUUCUC hit 563 : 7694 7660 (rev) 20.29 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU AG :C: +A+:G: CG AA :+U: UC 25581 AACUGAUGAGUUCUUGAAUGAUCGCAAGAGUUCUC 25615 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2457,sp|AC008834.7|AC008834 Homo sapiens chromosome 5 clone CTD-2147G20, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGAGUUCUUGAAUGAUCGCAAGAGUUCUC hit 564 : 180860 180826 (rev) 20.29 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU AG :C: +A+:G: CG AA :+U: UC 10237 AACUGAUGAGUUCUUGAAUGAUCGCAAGAGUUCUC 10271 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #2810,sp|AC009399.5|AC009399 Homo sapiens chromosome 14 clone RP11-368K8 containing KIAA0998 gene, partial cds, complete sequence. ----isReversed: 0 ----hitSequence: CUCUGAUAAUUUCCUAAAAGAAGGAAAUAGUCAUC hit 565 : 108107 108141 (fwd) 21.46 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAU A:U:CC AA+AG:A:G AA::+U::UC 108107 CUCUGAUAAUUUCCUAAAAGAAGGAAAUAGUCAUC 108141 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3155,sp|AC010252.4|AC010252 Homo sapiens chromosome 5 clone CTC-428I3, complete sequence. ----isReversed: 1 ----hitSequence: ACCUGAUGUGGGACAUAAUGGCCCAAAACUGGUGAC hit 566 : 125975 125940 (rev) 20.32 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A CUGAUG:G:+::A A U::+:C:AA+C:++:G+C 83138 ACCUGAUGUGGGACAUAaUGGCCCAAAACUGGUGAC 83173 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3240,sp|AC010364.6|AC010364 Homo sapiens chromosome 5 clone CTD-2042D5, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAAGAGAAGGAAAUACUUCCAAACUUGUUUC hit 567 : 39370 39336 (rev) 24.64 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA G G::+:AAAU:+::C A A::++::UC 124031 AACUGAAGAGAAGGAAAUACUUCCAAACUUGUUUC 124065 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3301,sp|AC010450.6|AC010450 Homo sapiens chromosome 5 clone CTD-2242D16, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAAGAGAAGGAAAUACUUCCAAACUUGUUUC hit 568 : 102590 102556 (rev) 24.64 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA G G::+:AAAU:+::C A A::++::UC 6327 AACUGAAGAGAAGGAAAUACUUCCAAACUUGUUUC 6361 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3383,sp|AC010585.6|AC010585 Homo sapiens chromosome 5 clone CTC-315O24, complete sequence. ----isReversed: 0 ----hitSequence: ACCUGAUGUGGGACAUAAUGGCCCAAAACUGGUGAC hit 569 : 164950 164985 (fwd) 20.32 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A CUGAUG:G:+::A A U::+:C:AA+C:++:G+C 164950 ACCUGAUGUGGGACAUAaUGGCCCAAAACUGGUGAC 164985 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3436,sp|AC010653.10|AC010653 Homo sapiens chromosome 16 clone RP11-417N10, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGUGAAUUUCAAAAAAAGUGAAACUUGUGUC hit 570 : 104758 104791 (fwd) 19.59 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG UGA: ::CAAA+A:: :GAAAC:++:GUC 104758 GGCUG-UGAAUUUCAAAAAAAGUGAAACUUGUGUC 104791 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3714,sp|AC011389.7|AC011389 Homo sapiens chromosome 5 clone CTB-174D11, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGACUUCAGAAGCAGAAGGAAACCCAGGUG hit 571 : 66597 66632 (fwd) 19.93 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +ACUGAUGA U:C+ AA +G:A GAAAC C GU 66597 CACUGAUGACUUCAGAAgCAGAAGGAAACCCAGGUG 66632 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3768,sp|AC011462.4|AC011462 Homo sapiens chromosome 19 clone CTC-435M10, complete sequence. ----isReversed: 1 ----hitSequence: CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC hit 572 : 129346 129312 (rev) 21.58 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG: CC AA+AG :CGA::::+ :::C 19496 CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC 19530 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #3949,sp|AC011899.5|AC011899 Homo sapiens BAC clone RP11-452C13 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGCUCAUGAGGGUGUAAAGAGACUGAAACUCGUGUG hit 573 : 139101 139136 (fwd) 19.75 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +CU AUGA ::+:AAA :+:: GAAAC:C+:GU 139101 GGCUCAUGAgGGUGUAAAGAGACUGAAACUCGUGUG 139136 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4171,sp|AC012498.10|AC012498 Homo sapiens BAC clone RP11-416L21 from 2, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAGGAUGCCCAAAGGCUGUUACUCUGAC hit 574 : 88941 88972 (fwd) 19.56 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA: A::CCCA +AGG::G :+C:C :G+C 88941 CACUGAGGAUGCCCA--AAGGCUGUUACUC-UGAC 88972 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4176,sp|AC012504.7|AC012504 Homo sapiens BAC clone RP11-469O11 from 4, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAAGAAGGCAAGAAAGGCUGAUAUGGAUAUC hit 575 : 117144 117110 (rev) 20.01 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA GA:: C+A+A++G ::GA A::+ ::UC 88743 AACUGAAGAAGGCAAGAAAGGCUGAUAUGGAUAUC 88777 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4524,sp|AC015977.9|AC015977 Homo sapiens BAC clone RP11-527I18 from 2, complete sequence. ----isReversed: 0 ----hitSequence: UGCUGAUGAAGAUACAGAGAAAUCGAAACCCUCAUAC hit 576 : 77863 77899 (fwd) 19.61 bits ::::::<<<.<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcu.cGUC 35 +CUGAUGA G:::CA+A A:::CGAA+:+CU +:+C 77863 UGCUGAUGAaGAUACAGAGAAAUCGAAACCCUcAUAC 77899 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4571,sp|AC016229.10|AC016229 Homo sapiens chromosome 18, clone RP11-27G24, complete sequence. ----isReversed: 0 ----hitSequence: UGCUCAUGAGUUGUAAAAAAAAGGAAAUGGUCCUC hit 577 : 148496 148530 (fwd) 20.65 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU AUGA U: :AAA+: :A GAAA G+UC UC 148496 UGCUCAUGAGUUGUAAAAAAAAGGAAAUGGUCCUC 148530 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #4796,sp|AC016906.7|AC016906 Homo sapiens BAC clone RP11-436E24 from 2, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUAAUUUUAAAAUAAAAGGAAACAUUUC hit 578 : 111811 111843 (fwd) 19.53 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAU A:U::+AAAU+::A:G AA:: ::UC 111811 CACUGAUAAUUUUAAAAUAAAAGGAAACA--UUUC 111843 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5119,sp|AC018889.7|AC018889 Homo sapiens BAC clone RP11-479F13 from 2, complete sequence. ----isReversed: 0 ----hitSequence: UGCUGAUGAUUUCCAAGAAUGCAAGAAUGAAAAACACUUC hit 579 : 54103 54142 (fwd) 19.75 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 +CUGAUGA:U:CCAA +AG:A:GAAA::C ::UC 54103 UGCUGAUGAUUUCCAAGaaugcAAGAAUGAAAAACACUUC 54142 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #5662,sp|AC022023.7|AC022023 Homo sapiens chromosome 10 clone RP11-411P18, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGAUGAGCUCCAGUAAGAGCGAAACCAGUUC hit 580 : 76376 76409 (fwd) 29.34 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGAG::CCA+ +AG::CGAAA:+ + :UC 76376 AGCUGAUGAGCUCCAGUAAGAGCGAAACCAG-UUC 76409 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6471,sp|AC025436.2|AC025436 Homo sapiens chromosome 5 clone CTC-429E15, complete sequence. ----isReversed: 1 ----hitSequence: UGCUGAUGAUAACCAGAAAGUUUGAAACACUAUUC hit 581 : 172674 172640 (rev) 29.50 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGA:::CCA+A+AG:::GAAA::CU::UC 11989 UGCUGAUGAUAACCAGAAAGUUUGAAACACUAUUC 12023 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6565,sp|AC025765.6|AC025765 Homo sapiens chromosome 5 clone CTB-57H20, complete sequence. ----isReversed: 1 ----hitSequence: AACUGUUGAGUUUUAAAUAAAAGGAAACCUAUC hit 582 : 21132 21100 (rev) 20.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUG UGA U:::AAAU:::A GAAA ++ UC 197384 AACUGUUGAGUUUUAAAUAAAAGGAAACCU--AUC 197416 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #6582,sp|AC025812.11|AC025812 Homo sapiens chromosome 3 clone RP11-182G24, complete sequence. ----isReversed: 0 ----hitSequence: GACAGAUGAGUCGAAGAAAAGACAAAACAUGAGUC hit 583 : 43644 43678 (fwd) 22.77 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AC GAUG GUC +A+A++ GAC AAAC:++:GUC 43644 GACAGAUGAGUCGAAGAAAAGACAAAACAUGAGUC 43678 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7583,sp|AC067859.7|AC067859 Homo sapiens chromosome 18, clone RP11-569D6, complete sequence. ----isReversed: 1 ----hitSequence: UGCUCAUGAGUUGUAAAAAAAAGGAAAUGGUCCUC hit 584 : 190898 190864 (rev) 20.65 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU AUGA U: :AAA+: :A GAAA G+UC UC 4712 UGCUCAUGAGUUGUAAAAAAAAGGAAAUGGUCCUC 4746 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #7811,sp|AC068725.5|AC068725 Homo sapiens chromosome 2 clone RP11-737H13, complete sequence. ----isReversed: 0 ----hitSequence: ACCUGAACAUUCUUUAAAAAGAUGAAAUAUUAUC hit 585 : 129184 129217 (fwd) 19.65 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGA :A:UC:: AA+::GA:G: A::+ ::UC 129184 ACCUGAACAUUCUUUAAAAAGAUGAAAUAU-UAUC 129217 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8453,sp|AC074020.4|AC074020 Homo sapiens BAC clone RP11-341A4 from 2, complete sequence. ----isReversed: 0 ----hitSequence: UACUAACGGUUUUCAGAAAAAAUGAAACAGGUUUC hit 586 : 19826 19860 (fwd) 20.31 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACU A:G :U::CA+A+A::A: A:A::++::UC 19826 UACUAACGGUUUUCAGAAAAAAUGAAACAGGUUUC 19860 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8552,sp|AC074348.6|AC074348 Homo sapiens BAC clone RP11-678B3 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGGUGAUGAGUUUUAAAAAUCACGAAACUGGUGUC hit 587 : 42765 42799 (fwd) 25.31 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + UGAUGAGU ::AAA+:: ACGAAAC:++:GUC 42765 GGGUGAUGAGUUUUAAAAAUCACGAAACUGGUGUC 42799 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8678,sp|AC078953.20|AC078953 Homo sapiens 3 BAC RP11-370M22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: UGCUGACGAGGUUUCAGAGAAAAGGAAAUGCUUAUA hit 588 : 100828 100863 (fwd) 21.03 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA:GA U::CA+A A::A GA:A::CU::U 100828 UGCUGACGAgGUUUCAGAGAAAAGGAAAUGCUUAUA 100863 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #8890,sp|AC079459.30|AC079459 Homo sapiens 12 BAC RP11-435O22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AACUGAGGAUUCCCUGAGGAGGAAGAAACUGCCUGUG hit 589 : 84660 84696 (fwd) 20.67 bits ::::::<<<<<<<<___._>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcu.cGUC 35 AACUGA:GA:UCCC +A AGGA:GA:AC:+ :GU 84660 AACUGAGGAUUCCCUGAgGAGGAAGAAACUGCcUGUG 84696 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9399,sp|AC087269.5|AC087269 Homo sapiens chromosome 8, clone RP11-211C9, complete sequence. ----isReversed: 1 ----hitSequence: AACAGAUGAACCUCUAAGAAGAGAGAAACCUUUUC hit 590 : 172926 172892 (rev) 19.54 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 AAC GAUGA ::C:AA +:G:: GAAA:++U :UC 14999 AACAGAUGAaCCUCUAAGAAGAGAGAAACCUU-UUC 15033 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum02.dat.fasta.gz ----sequence: #9684,sp|AC090133.6|AC090133 Homo sapiens chromosome 8, clone RP11-813L8, complete sequence. ----isReversed: 0 ----hitSequence: GACUGAAGCAUCCCAAAGAGGAAGAAACUCUGCC hit 591 : 53035 53068 (fwd) 21.22 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGA G::UCCCAAA AGGA::A C:C :G C 53035 GACUGAAGCAUCCCAAAGAGGAAGAAACUC-UGCC 53068 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #391,sp|AC092032.5|AC092032 Homo sapiens BAC clone RP11-730B22 from 7, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGUGGGCCAUGGAAAGGCCUAAACAGAUGAC hit 592 : 90346 90310 (rev) 19.64 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUG:G: CCA +AG :C:AA+C:+ :G+C 86053 CACUGAUGUGGGCCAUGgaAAGGCCUAAACAGAUGAC 86089 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #398,sp|AC092039.2|AC092039 Homo sapiens chromosome 3 clone RP11-114P15, complete sequence. ----isReversed: 0 ----hitSequence: UACUGAUGCUUCCAAAACCAAUGGGAAGAAACAGGAUUC hit 593 : 115278 115316 (fwd) 20.29 bits ::::::<<<<<<<<___...._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA....uaGgaCGAaACgcucGUC 35 ACUGAUG::UCC AAA U GGA::AAA::++::UC 115278 UACUGAUGCUUCCAAAAccaaUGGGAAGAAACAGGAUUC 115316 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #971,sp|AC092959.6|AC092959 Homo sapiens 3 BAC RP11-649A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AACUGAGGAGUCAGUGAGGACUAAACUCUCUGUC hit 594 : 145452 145419 (rev) 20.70 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 AACUGA:G:GUC:: ::GAC:A:AC:CU :GUC 34263 AACUGAGGAGUCAGU--GAGGACUAAACUCUcUGUC 34296 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #1013,sp|AC093015.5|AC093015 Homo sapiens 12q BAC RP11-534K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AGCUAAUGAACUUCCAAAUAGAAUGAAACUUUUUUG hit 595 : 27577 27542 (rev) 22.93 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A+CU AUGA U:CCAAAUAG:A GAAA::+U::U 87718 AGCUAAUGAaCUUCCAAAUAGAAUGAAACUUUUUUG 87753 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2036,sp|AC097537.2|AC097537 Homo sapiens BAC clone RP11-806K15 from 4, complete sequence. ----isReversed: 1 ----hitSequence: AUCUGAUGAGUCCCAGAAGGAAUGAAAUAGUUUUA hit 596 : 69471 69437 (rev) 20.77 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA U C:A+A+:G A GAAA :+U: U 69104 AUCUGAUGAGUCCCAGAAGGAAUGAAAUAGUUUUA 69138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #2588,sp|AC103782.2|AC103782 Homo sapiens chromosome 8, clone RP11-653G3, complete sequence. ----isReversed: 0 ----hitSequence: AAAUGAGGAUUUCAAGAAAGAAUGAAAAUUAUAUC hit 597 : 16370 16404 (fwd) 19.50 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AA UGA:GA:U:C+A+A++G:A:GA:A::+ ::UC 16370 AAAUGAGGAUUUCAAGAAAGAAUGAAAAUUAUAUC 16404 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3150,sp|AC105057.7|AC105057 Homo sapiens 3 BAC RP11-543P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: CUCUGAUGAGUCCCAAGCAGGACGUUAGUUUUCUC hit 598 : 6387 6421 (fwd) 23.35 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGA AGUCCCAA AGGACG A :+U: UC 6387 CUCUGAUGAGUCCCAAGCAGGACGUUAGUUUUCUC 6421 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3464,sp|AC106796.3|AC106796 Homo sapiens chromosome 16 clone RP11-429K17, complete sequence. ----isReversed: 0 ----hitSequence: GCCUGAGGAGCUCCAAGUAGAGGGUAACUCUUGAC hit 599 : 69368 69402 (fwd) 21.71 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA: A ::CCAA UAG:: G :+C:CU:G+C 69368 GCCUGAGGAGCUCCAAGUAGAGGGUAACUCUUGAC 69402 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #3942,sp|AC108487.2|AC108487 Homo sapiens chromosome 3 clone RP11-733E24, complete sequence. ----isReversed: 0 ----hitSequence: GACAGAUGAGUCGAAGAAAAGACAAAACAUGAGUC hit 600 : 104199 104233 (fwd) 22.77 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AC GAUG GUC +A+A++ GAC AAAC:++:GUC 104199 GACAGAUGAGUCGAAGAAAAGACAAAACAUGAGUC 104233 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5055,sp|AC116347.2|AC116347 Homo sapiens chromosome 5 clone RP11-274E7, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGAGUUCUUGAAUGAUCGCAAGAGUUCUC hit 601 : 7203 7169 (rev) 20.29 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU AG :C: +A+:G: CG AA :+U: UC 125182 AACUGAUGAGUUCUUGAAUGAUCGCAAGAGUUCUC 125216 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #5171,sp|AC117385.3|AC117385 Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: GGCUGAUGAGUGCUGGAUAGCAAGAAACCCAGGC hit 602 : 139266 139299 (fwd) 22.97 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGA U+C: +AU:G+A GAA C+C G C 139266 GGCUGAUGAGUGCUGGAUAGCAAGAAACCCA-GGC 139299 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6407,sp|AC134511.2|AC134511 Homo sapiens 12 BAC RP11-528M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: UACUGAACAGUUUUAAAAAACGAAACUUCUGAC hit 603 : 106858 106890 (fwd) 21.24 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGA :AGU:::A +:::ACG: +C:+ :G+C 106858 UACUGAACAGUUUUA--AAAAACGAAACUUCUGAC 106890 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6586,sp|AC136759.4|AC136759 Homo sapiens chromosome 11, clone RP11-114J20, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGAGACCCAAAGAGGUGAAGUUGUUAGC hit 604 : 26349 26316 (rev) 20.06 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGAG:CCCAAA AGG: GAA:::+U:::C 125921 AACUGAUGAGACCCAAAGAGGU-GAAGUUGUUAGC 125954 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #6962,sp|AC140830.2|AC140830 Homo sapiens chromosome 5 clone RP11-901K15, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGAGUUCUUGAAUGAUCGCAAGAGUUCUC hit 605 : 35822 35788 (rev) 20.29 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU AG :C: +A+:G: CG AA :+U: UC 132421 AACUGAUGAGUUCUUGAAUGAUCGCAAGAGUUCUC 132455 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum03.dat.fasta.gz ----sequence: #8965,sp|AF021944.1|AF021944 Homo sapiens ID:CLL109 IgG heavy chain variable region mRNA, partial cds. ----isReversed: 0 ----hitSequence: AACUGAGGAGCCUGAGAUUUGACGACACCGCCGUC hit 606 : 245 279 (fwd) 20.56 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GAG C: A+AU :G CGA:AC:+ :GUC 245 AACUGAGGAGCCUGAGAUUUGACGACACCGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----sequence: #9068,sp|AF103030.1|AF103030 Homo sapiens isolate donor D clone D103 immunoglobulin heavy chain variable region mRNA, partial cds. ----isReversed: 0 ----hitSequence: AACUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 607 : 225 259 (fwd) 22.38 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GAG C: A+AU :G CGA:ACG+ CGUC 225 AACUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----sequence: #9133,sp|AF103095.1|AF103095 Homo sapiens isolate donor D clone D85 immunoglobulin heavy chain variable region mRNA, partial cds. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 608 : 225 259 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 225 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum04.dat.fasta.gz ----sequence: #9156,sp|AF103118.1|AF103118 Homo sapiens clone N12 immunoglobulin heavy chain variable region mRNA, partial cds. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 609 : 229 263 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 229 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 263 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #3508,sp|AF146400.1|AF146400 Homo sapiens antibody heavy chain variable region (EL-5) mRNA, partial cds. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 610 : 245 279 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 245 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #3511,sp|AF146403.1|AF146403 Homo sapiens antibody heavy chain variable region (EL-16) mRNA, partial cds. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 611 : 245 279 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 245 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #3512,sp|AF146404.1|AF146404 Homo sapiens antibody heavy chain variable region (EL-25) mRNA, partial cds. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 612 : 245 279 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 245 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #4145,sp|AF152365.1|AF152365 Homo sapiens constitutive fragile region FRA3B sequence. ----isReversed: 0 ----hitSequence: GACAGAUGAGUCGAAGAAAAGACAAAACAUGAGUC hit 613 : 77810 77844 (fwd) 22.77 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AC GAUG GUC +A+A++ GAC AAAC:++:GUC 77810 GACAGAUGAGUCGAAGAAAAGACAAAACAUGAGUC 77844 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum05.dat.fasta.gz ----sequence: #8912,sp|AF217751.1|AF217751 Homo sapiens protocadherin-psi1 (PCDH-psi1) mRNA, complete cds. ----isReversed: 1 ----hitSequence: UGCUGAUGAUAACCAGAAAGUUUGAAACACUAUUC hit 614 : 2751 2717 (rev) 29.50 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGA:::CCA+A+AG:::GAAA::CU::UC 313 UGCUGAUGAUAACCAGAAAGUUUGAAACACUAUUC 347 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum06.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz ----sequence: #8374,sp|AK001229.1|AK001229 Homo sapiens cDNA FLJ10367 fis, clone NT2RM2001424, highly similar to Homo sapiens mRNA; cDNA DKFZp586D0920. ----isReversed: 0 ----hitSequence: CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC hit 615 : 195 229 (fwd) 21.58 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG: CC AA+AG :CGA::::+ :::C 195 CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC 229 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----sequence: #808,sp|AK022863.1|AK022863 Homo sapiens cDNA FLJ12801 fis, clone NT2RP2002099, highly similar to Homo sapiens mRNA for E1B-55kDa-associated protein. ----isReversed: 0 ----hitSequence: CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC hit 616 : 1731 1765 (fwd) 21.58 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG: CC AA+AG :CGA::::+ :::C 1731 CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC 1765 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----sequence: #951,sp|AK023006.1|AK023006 Homo sapiens cDNA FLJ12944 fis, clone NT2RP2005168, highly similar to Homo sapiens mRNA for E1B-55kDa-associated protein. ----isReversed: 0 ----hitSequence: CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC hit 617 : 1368 1402 (fwd) 21.58 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG: CC AA+AG :CGA::::+ :::C 1368 CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC 1402 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum08.dat.fasta.gz ----sequence: #9043,sp|AK057766.1|AK057766 Homo sapiens cDNA FLJ25037 fis, clone CBL03066. ----isReversed: 1 ----hitSequence: AACUGACUUGCUCCAUAGAGCCCAACAGUUUUG hit 618 : 330 298 (rev) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:::G::CCA UAG::C:::A::+U::U 2232 AACUGACUUGCUCCA--UAGAGCCCAACAGUUUUG 2264 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #5613,sp|AK095002.1|AK095002 Homo sapiens cDNA FLJ37683 fis, clone BRHIP2013510. ----isReversed: 1 ----hitSequence: CACUGACGAGGCCUAUAGGCAAGGCAGAGACUGAGUC hit 619 : 1338 1302 (rev) 19.64 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 +ACUGA:GA :CC:A A +:GG: GA:AC + GUC 1353 CACUGACGAGGCCUAUAggcAAGGCAGAGACUG-AGUC 1389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum09.dat.fasta.gz ----sequence: #9872,sp|AL136984.20|AL136984 Human DNA sequence from clone RP11-52A20 on chromosome 1q24.1-24.3 ----isReversed: 0 ----hitSequence: GACUGAAAACUCCCAAGAGGGAUGGGACCUUGUC hit 620 : 27814 27847 (fwd) 20.24 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGA A UCC:AA +:GGA G AC++U GUC 27814 GACUGAAAACUCCCAAGAGGGAUGGGACCUU-GUC 27847 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #154,sp|AL138834.28|AL138834 Human DNA sequence from clone RP11-113A10 on chromosome 9 ----isReversed: 0 ----hitSequence: AGCUGAUGAGCUCCAAAAAGAGCGAAACCUAUUA hit 621 : 97518 97551 (fwd) 30.92 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGAG::CCAAA+AG::CGAAA:++ :U 97518 AGCUGAUGAGCUCCAAAAAGAGCGAAACCUA-UUA 97551 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #757,sp|AL158826.23|AL158826 Human DNA sequence from clone RP11-244N20 on chromosome 9 ----isReversed: 1 ----hitSequence: CACUGAUGUGGUCCAAAAGUCCUAAACAGUGUC hit 622 : 43883 43851 (rev) 23.21 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUG:G: CCAA +AG :C:AAAC:+ :GUC 140631 CACUGAUGUGGUCCAA-AAGUCCUAAACAG-UGUC 140663 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #808,sp|AL159980.14|AL159980 Human DNA sequence from clone RP11-56M2 on chromosome 13 ----isReversed: 1 ----hitSequence: GGCAGAAGAGACACAGAUUAUGUCGAAAGAGUUCUC hit 623 : 66961 66926 (rev) 19.69 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +C GA GAG:C:CA+A UA:G:CGA A :+U: UC 95084 GGCAGAAGAGACACAGAuUAUGUCGAAAGAGUUCUC 95119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #884,sp|AL160270.19|AL160270 Human DNA sequence from clone RP11-296L22 on chromosome 9 ----isReversed: 1 ----hitSequence: AACUGAAGAGUCCUUAGCCUGUAGGAGGACAGGUUUCUC hit 624 : 170030 169992 (rev) 19.60 bits ::::::<<<<<<<<___...._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA....uaGgaCGAaACgcucGUC 35 AACUGA GA UCC: A U:GGA GA A :+U: UC 29085 AACUGAAGAGUCCUUAGccugUAGGAGGACAGGUUUCUC 29123 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1519,sp|AL354733.15|AL354733 Human DNA sequence from clone RP11-575L7 on chromosome 9 ----isReversed: 0 ----hitSequence: GACUGAUCAGCCCCAGACAUGGCGUAACUAUGGUC hit 625 : 163854 163888 (fwd) 20.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAU:AG:C CA+A A G:CG:AAC U GUC 163854 GACUGAUCAGCCCCAGACAUGGCGUAACUAUGGUC 163888 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1821,sp|AL355543.13|AL355543 Human DNA sequence from clone RP11-86E10 on chromosome 10 ----isReversed: 1 ----hitSequence: AGCUGAUGAGCUCCAGUAAGAGCGAAACCAGUUC hit 626 : 160193 160160 (rev) 29.34 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGAG::CCA+ +AG::CGAAA:+ + :UC 18817 AGCUGAUGAGCUCCAGUAAGAGCGAAACCAG-UUC 18850 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #1943,sp|AL356100.8|AL356100 Human DNA sequence from clone RP11-359H22 on chromosome 10 ----isReversed: 1 ----hitSequence: GACUGAUUAUUUUAAAAGCAAAAUGUAACAUUUUUC hit 627 : 76899 76864 (rev) 20.17 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 ACUGAU:A:U::+AAA +::A:G:AA::+U::UC 113463 GACUGAUUAUUUUAAAAgCAAAAUGUAACAUUUUUC 113498 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2001,sp|AL356257.14|AL356257 Human DNA sequence from clone RP11-789G22 on chromosome 13 ----isReversed: 1 ----hitSequence: CACUGAUGAGCUCCAAAUAGAUGGAAAGUCGAUUC hit 628 : 175572 175538 (rev) 24.57 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGA :CCAAAUAG: GAAA C+ UC 17912 CACUGAUGAGCUCCAAAUAGAUGGAAAGUCGAUUC 17946 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2534,sp|AL359266.14|AL359266 Human DNA sequence from clone RP11-26P21 on chromosome 13 ----isReversed: 0 ----hitSequence: GGCUGAUGCGUCCCUAAGGACAAUAGGGGCUUC hit 629 : 142028 142060 (fwd) 21.75 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA G:GUCCC +AGGAC:A A G++C UC 142028 GGCUGAUGCGUCCCU--AAGGACAAUAGGGGCUUC 142060 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2834,sp|AL360297.12|AL360297 Human DNA sequence from clone RP11-386O9 on chromosome 1 ----isReversed: 1 ----hitSequence: CUCUGAAGAUUCUCUAAUAGGAAGAAAUGCAUC hit 630 : 149093 149061 (rev) 21.40 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGA GA:UC:C AAUA:GA:GA A:G C:UC 20789 CUCUGAAGAUUCUCUAAUAGGAAGAAAUG--CAUC 20821 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2913,sp|AL365396.10|AL365396 Human DNA sequence from clone RP11-338N12 on chromosome 9 ----isReversed: 0 ----hitSequence: ACCUGAAGAAACUCAGAUGAGUAGAAACCUUUUG hit 631 : 100860 100893 (fwd) 21.00 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGA GA::C::A+AU::G::GA A:++U :U 100860 ACCUGAAGAAACUCAGAUGAGUAGAAACCUU-UUG 100893 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #2949,sp|AL389889.11|AL389889 Human DNA sequence from clone RP11-164D18 on chromosome 20 Contains part of a novel gene similar to KIAA0233, ESTs, STSs and GSSs. ----isReversed: 1 ----hitSequence: CACUGACGAGGAGGAAAUACUUCUAAACUCAUUC hit 632 : 102762 102729 (rev) 21.24 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:G:G :+:AAAU:+: C:A:A: C :UC 35586 CACUGACGAGGAGGAAAUACUUCUAAACUC-AUUC 35619 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #3259,sp|AL391724.7|AL391724 Human DNA sequence from clone RP11-350A18 on chromosome 13 ----isReversed: 0 ----hitSequence: AACUGAUGUGCUGAAAAGUAGAGCGAAAUGGAAAUA hit 633 : 128657 128692 (fwd) 20.19 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUG:G::++AAA U++::C:AAA::+ ::U 128657 AACUGAUGUGCUGAAAAgUAGAGCGAAAUGGAAAUA 128692 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #4860,sp|AL591718.14|AL591718 Human DNA sequence from clone RP11-399A15 on chromosome 6 ----isReversed: 0 ----hitSequence: AACAGACGACCUCCAGAAUGGGGAGAAAAUGUUUUC hit 634 : 55122 55157 (fwd) 20.22 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 AAC GA:GA ::C:A+A U:G:: GA:A::+U::UC 55122 AACAGACGACCUCCAGAaUGGGGAGAAAAUGUUUUC 55157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #5076,sp|AL596188.6|AL596188 Human DNA sequence from clone CTA-31J9 on chromosome 6 ----isReversed: 1 ----hitSequence: AACUGAUUAGGCCAAAAUAGGCCUAAUCUCGUGA hit 635 : 31004 30971 (rev) 21.41 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU::G:CC+AAAU+GG:C::A C:C+:G 38673 AACUGAUUAGGCCAAAAUAGGCCUAAUCUCGUGA- 38706 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #5808,sp|AL731576.9|AL731576 Human DNA sequence from clone RP11-178G16 on chromosome 10 ----isReversed: 0 ----hitSequence: AACUGAGAUUCCUAAAAAGGAGGAACAGGAAUC hit 636 : 25568 25600 (fwd) 20.44 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA GA:UCC:AAA+:GGA:GA A :++: UC 25568 AACUGA-GAUUCCUAAAAAGGAGGA-ACAGGAAUC 25600 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #6478,sp|AP000472.2|AP000472 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B258A5, LL56-APP region. ----isReversed: 0 ----hitSequence: UGCUGAUGAGGGGCCAAGGCCUGAAAUUGGUGUC hit 637 : 2424 2457 (fwd) 20.85 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGA :+C:A +:G+: GAAA :++: UC 2424 UGCUGAUGAgGGGCCA--AGGCCUGAAAUUGGUGUC 2457 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7026,sp|AP001482.4|AP001482 Homo sapiens genomic DNA, chromosome 11q clone:CTC-345G8. ----isReversed: 0 ----hitSequence: AACUGAUGAGACCCAAAGAGGUGAAGUUGUUAGC hit 638 : 14031 14064 (fwd) 20.06 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGAG:CCCAAA AGG: GAA:::+U:::C 14031 AACUGAUGAGACCCAAAGAGGU-GAAGUUGUUAGC 14064 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #7120,sp|AP001683.1|AP001683 Homo sapiens genomic DNA, chromosome 21q, section 27/105. ----isReversed: 0 ----hitSequence: UGCUGAUGAGGGGCCAAGGCCUGAAAUUGGUGUC hit 639 : 8707 8740 (fwd) 20.85 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGA :+C:A +:G+: GAAA :++: UC 8707 UGCUGAUGAgGGGCCA--AGGCCUGAAAUUGGUGUC 8740 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum10.dat.fasta.gz ----sequence: #8068,sp|AY003740.1|AY003740 Homo sapiens isolate sy-1A/11-A2 immunoglobulin alpha heavy chain variable region mRNA, partial cds. ----isReversed: 0 ----hitSequence: AACUGAGGAGCCUGAGAUCGGACGACACGGCCGUC hit 640 : 174 208 (fwd) 23.80 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GAG C: A+AU :G CGA:ACG+ CGUC 174 AACUGAGGAGCCUGAGAUCGGACGACACGGCCGUC 208 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum11.dat.fasta.gz ----sequence: #4794,sp|AY281332.1|AY281332 Homo sapiens isolate M15 immunoglobulin heavy chain variable region mRNA, partial cds. ----isReversed: 0 ----hitSequence: AACUGAGGAGCCUGAGACUUGACGACACGGCCGUC hit 641 : 245 279 (fwd) 19.75 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GAG C: A+A :G CGA:ACG+ CGUC 245 AACUGAGGAGCCUGAGACUUGACGACACGGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----sequence: #70,sp|BC002564.1|BC002564 Homo sapiens, E1B-55kDa-associated protein 5, clone MGC:1974 IMAGE:3139049, mRNA, complete cds. ----isReversed: 0 ----hitSequence: CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC hit 642 : 1678 1712 (fwd) 21.58 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG: CC AA+AG :CGA::::+ :::C 1678 CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC 1712 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----sequence: #3227,sp|BC008013.1|BC008013 Homo sapiens, Similar to CG12113 gene product, clone IMAGE:3532726, mRNA, partial cds. ----isReversed: 1 ----hitSequence: AACUGACUUGCUCCAUAGAGCCCAACAGUUUUG hit 643 : 421 389 (rev) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:::G::CCA UAG::C:::A::+U::U 2152 AACUGACUUGCUCCA--UAGAGCCCAACAGUUUUG 2184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----sequence: #4600,sp|BC009988.1|BC009988 Homo sapiens, clone MGC:16706 IMAGE:4127873, mRNA, complete cds. ----isReversed: 0 ----hitSequence: CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC hit 644 : 1584 1618 (fwd) 21.58 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG: CC AA+AG :CGA::::+ :::C 1584 CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC 1618 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum12.dat.fasta.gz ----sequence: #4607,sp|BC009995.1|BC009995 Homo sapiens, clone MGC:16733 IMAGE:4129693, mRNA, complete cds. ----isReversed: 1 ----hitSequence: AACUGACUUGCUCCAUAGAGCCCAACAGUUUUG hit 645 : 972 940 (rev) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:::G::CCA UAG::C:::A::+U::U 924 AACUGACUUGCUCCA--UAGAGCCCAACAGUUUUG 956 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum13.dat.fasta.gz ----sequence: #1754,sp|BC027713.1|BC027713 Homo sapiens, Similar to E1B-55kDa-associated protein 5, clone MGC:16645 IMAGE:4123077, mRNA, complete cds. ----isReversed: 0 ----hitSequence: CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC hit 646 : 1661 1695 (fwd) 21.58 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG: CC AA+AG :CGA::::+ :::C 1661 CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC 1695 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3561,sp|AL163973.1|CNS05TBS Human chromosome 14 DNA sequence BAC C-2213F21 of library CalTech-D from chromosome 14 of Homo sapiens (Human) ----isReversed: 1 ----hitSequence: UGCUGACGAAUCCCAUAAAGAAGGAAAGCAGUAGUC hit 647 : 113873 113838 (rev) 21.44 bits ::::::<<<<<<<<____>>>>>>>><.<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaA.CgcucGUC 35 +CUGA:GA:U CCA A+AG A:GA:A C:+U:GUC 2631 UGCUGACGAAUCCCAUAAAGAAGGAAAgCAGUAGUC 2666 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #3684,sp|AL390798.3|CNS06C7P Human chromosome 14 DNA sequence BAC R-21O19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human) ----isReversed: 1 ----hitSequence: UGCUGACGAAUCCCAUAAAGAAGGAAAGCAGUAGUC hit 648 : 1179 1144 (rev) 21.44 bits ::::::<<<<<<<<____>>>>>>>><.<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaA.CgcucGUC 35 +CUGA:GA:U CCA A+AG A:GA:A C:+U:GUC 152962 UGCUGACGAAUCCCAUAAAGAAGGAAAgCAGUAGUC 152997 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz ----sequence: #5132,sp|U07194.1|HS07194 Human clone LNA1 autoantibody Ig heavy chain V region mRNA, partial cds. ----isReversed: 0 ----hitSequence: AACUGAGGCGGCUGAAAUAUGACGACACGGCCGUC hit 649 : 233 267 (fwd) 20.08 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:G:G C::AAAU::G C:A:ACG+ CGUC 233 AACUGAGGCGGCUGAAAUAUGACGACACGGCCGUC 267 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----sequence: #6778,sp|AL008734.10|HS324M8 Human DNA sequence from clone RP3-324M8 on chromosome 1p36.2-36.3 ----isReversed: 1 ----hitSequence: UGCUGUUGAGACCCAGAGGGCGAAACCCUGGC hit 650 : 11669 11638 (rev) 21.07 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG UGAG CCCA AGG CGAA C+CU G C 73448 UGCUGUUGAGACCCA--GAGGGCGAAACCCU-GGC 73479 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----sequence: #8200,sp|AL008634.1|HS396D17 Human DNA sequence from clone RP3-396D17 on chromosome 1p33-35.3 ----isReversed: 0 ----hitSequence: AACUGAUGAAUUACAAAUAAAGAAACACAAGUG hit 651 : 146112 146144 (fwd) 21.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGA:U::CA +A::A:GAAAC:C :GU 146112 AACUGAUGAAUUACA--AAUAAAGAAACACAAGUG 146144 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum15.dat.fasta.gz ----sequence: #8445,sp|X73163.1|HS3L31VH2 H.sapiens 3L31VH1.2 gene for Ig heavy chain variable region subgroup I ----isReversed: 0 ----hitSequence: AGCUGAGGAGUCUGAGAUCUGACGACAUGGCCGUC hit 652 : 174 208 (fwd) 20.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUC: A+AU :GACGA:A G+ C UC 174 AGCUGAGGAGUCUGAGAUCUGACGACAUGGCCGUC 208 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #5682,sp|AL022401.2|HS93L7 Human DNA sequence from clone RP1-93L7 on chromosome Xq21 ----isReversed: 0 ----hitSequence: UGCUGAUGAGGUUGCAGAGAAAAGGAAAUCUUAUUC hit 653 : 37864 37899 (fwd) 20.10 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGA U: CA+A A :A GAAA ++U+ UC 37864 UGCUGAUGAgGUUGCAGAGAAAAGGAAAUCUUAUUC 37899 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #6308,sp|AL109617.2|HS9P14 Homo sapiens chromosome 21 Cosmid LLNLc116P149. ----isReversed: 1 ----hitSequence: UGCUGAUGAGGGGCCAAGGCCUGAAAUUGGUGUC hit 654 : 17643 17610 (rev) 20.85 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +CUGAUGA :+C:A +:G+: GAAA :++: UC 18711 UGCUGAUGAgGGGCCA--AGGCCUGAAAUUGGUGUC 18744 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum16.dat.fasta.gz ----sequence: #8304,sp|AJ231636.1|HSA231636 Homo sapiens rearranged Ig heavy chain variable region, isolate cell D3/17/27+ ----isReversed: 0 ----hitSequence: AACUGAGGAGUCUGAGACCGGACGACACGGCCGUG hit 655 : 146 180 (fwd) 22.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GAGUC: A+A :GACGA:ACG+ CGU 146 AACUGAGGAGUCUGAGACCGGACGACACGGCCGUG 180 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum17.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum18.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----sequence: #5491,sp|AJ347143.1|HSA347143 Homo sapiens partial IGVH1-18 gene for immunoglobulin heavy chain variable region, isolate case2-cell214 ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 656 : 149 183 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 149 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----sequence: #6740,sp|AJ402390.1|HSA402390 Homo sapiens partial IGHV1 gene for immunoglobulin heavy chain variable region 4, donor HH, . ----isReversed: 0 ----hitSequence: AACUGAGGAGUCUGAGAUCUGACGACACGGCCGUG hit 657 : 153 187 (fwd) 23.91 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GAGUC: A+AU :GACGA:ACG+ CGU 153 AACUGAGGAGUCUGAGAUCUGACGACACGGCCGUG 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----sequence: #7553,sp|AJ406721.1|HSA406721 Homo sapiens partial VH1-18 gene for rearranged immunoglobulin heavy chain variable region, isolate case2-Ki67--145 ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCNGAGAUCUGACGACACGGACGUG hit 658 : 245 279 (fwd) 20.20 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C A+AU G CGA:ACG+ CGU 245 AGCUGAGGAGCCNGAGAUCUGACGACACGGACGUG 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum19.dat.fasta.gz ----sequence: #8614,sp|AJ415020.1|HSA415020 Homo sapiens partial IGVH1-18 gene for immunoglobulin heavy chain variable region, donor MF, cell15 ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC hit 659 : 143 177 (fwd) 21.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C: A+AU :G CGA:ACG+ CGUC 143 AGCUGAGGAGCCUGAGAUCUGACGACACGGCCGUC 177 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #2473,sp|AJ555945.1|HSA555945 Homo sapiens partial VH1-18 gene for rearranged immunoglobulin heavy chain ----isReversed: 0 ----hitSequence: AACUGAGGAGUCUCAGAUCUGACGACACGGCCGUC hit 660 : 152 186 (fwd) 26.86 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GAGUC: A+AU :GACGA:ACG+ CGUC 152 AACUGAGGAGUCUCAGAUCUGACGACACGGCCGUC 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #3159,sp|AJ007509.1|HSA7509 Homo sapiens mRNA for E1B-55kDa-associated protein ----isReversed: 0 ----hitSequence: CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC hit 661 : 1772 1806 (fwd) 21.58 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG: CC AA+AG :CGA::::+ :::C 1772 CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC 1806 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum20.dat.fasta.gz ----sequence: #3782,sp|AC002106.1|HSAC2106 Genomic sequence from Human 9q34, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGUGGUCCAAAAGUCCUAAACAGUGUC hit 662 : 15271 15239 (rev) 23.21 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUG:G: CCAA +AG :C:AAAC:+ :GUC 25544 CACUGAUGUGGUCCAA-AAGUCCUAAACAG-UGUC 25576 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz ----sequence: #2961,sp|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C8 on chromosome 20 Contains three CpG islands, GSSs and STSs. ----isReversed: 1 ----hitSequence: CGCUGACGAAUUACAAAGAGGAAGAAAGUGUUAAC hit 663 : 45569 45535 (rev) 19.55 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GA:U::CAAA A::A:GA:+ :+U: +C 105417 CGCUGACGAAUUACAAAGAGGAAGAAAGUGUUAAC 105451 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #394,sp|L12078.1|HSIGHAMJ Homo sapiens (clone WR4.35VH) anti-thyroid peroxidase monoclonal autoantibody IgH chain, V region. ----isReversed: 0 ----hitSequence: AACUGACCAGCCUGAAAUCGGACGACACGGCCGUC hit 664 : 248 282 (fwd) 19.57 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA :AG C: AAAU :G CG: ACG+ CGUC 248 AACUGACCAGCCUGAAAUCGGACGACACGGCCGUC 282 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #588,sp|L23558.1|HSIGHDJCD Human IgH chain VDJ region mRNA, partial cds. ----isReversed: 0 ----hitSequence: AACUGAGUAGUCUGAGAUCUGACGACACGGCCGUC hit 665 : 245 279 (fwd) 20.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::AGUC: A+AU :GACG::ACG+ CGUC 245 AACUGAGUAGUCUGAGAUCUGACGACACGGCCGUC 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #2056,sp|X91804.1|HSIGMHAVH H.sapiens mRNA for Ig heavy chain variable and joining regions ----isReversed: 0 ----hitSequence: AGCUGAGGAGCCUGAGAUAUGACGACACGGCCGUG hit 666 : 245 279 (fwd) 22.07 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAG C::A+AU::G CGA:ACG+ CGU 245 AGCUGAGGAGCCUGAGAUAUGACGACACGGCCGUG 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #3517,sp|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060K6 on chromosome 20p12.1-13. Contains an RPS11 (40S ribosomal protein S11) pseudogene, ESTs, STSs and GSSs. ----isReversed: 1 ----hitSequence: UCCUGAUGAGUUUAAGAGGAAAACAAAAUGCCUUC hit 667 : 9599 9565 (rev) 20.80 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 CUGAUG GU::+A+A +::AC AAA GC C UC 107751 UCCUGAUGAGUUUAAGAgGAAAACAAAAUGC-CUUC 107785 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #3856,sp|AL121920.21|HSJ539E24 Human DNA sequence from clone RP4-539E24 on chromosome 20 Contains the TFAP2C gene for transcription factor AP-2 gamma (activating enhancer-binding protein 2 gamma) and a prothymosin alpha (PTMA) pseudogene. Contains ESTs, GSSs, STSs and a CpG island. ----isReversed: 1 ----hitSequence: AACUGAUAAAUCCCUGAAAGGCAGAAACACAUUC hit 668 : 65130 65097 (rev) 19.88 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU A: CCC +A+AGG :G AA::C ::UC 21234 AACUGAUAAAUCCCUGAAAGGCAGAAACAC-AUUC 21267 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum22.dat.fasta.gz ----sequence: #6309,sp|AL050146.1|HSM800446 Homo sapiens mRNA; cDNA DKFZp586D0920 (from clone DKFZp586D0920) ----isReversed: 0 ----hitSequence: CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC hit 669 : 537 571 (fwd) 21.58 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GAG: CC AA+AG :CGA::::+ :::C 537 CACUGACGAGGACCUAAAAGACCGAACAAUAAAGC 571 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum23.dat.fasta.gz ----sequence: #1279,sp|AL834171.1|HSM805452 Homo sapiens mRNA; cDNA DKFZp762N2115 (from clone DKFZp762N2115) ----isReversed: 1 ----hitSequence: AACUGACUUGCUCCAUAGAGCCCAACAGUUUUG hit 670 : 911 879 (rev) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:::G::CCA UAG::C:::A::+U::U 2190 AACUGACUUGCUCCA--UAGAGCCCAACAGUUUUG 2222 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/hum24.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/hum26.dat.fasta.gz done 1.65905e+10 nucs (frac lets thru so far=0.000606072, 2d-fracLetsThru=0.000317213). Filter report: done 1.65905e+10 nucs (frac lets thru so far=0.0119291, 2d-fracLetsThru=0.00636115). Filter report: done 1.9791e+08 nucs (frac lets thru so far=0.0508062, 2d-fracLetsThru=0.0498673). done 1.65905e+10 nucs (frac lets thru so far=0.000606072, 2d-fracLetsThru=0.000317213). CPU time: 122238.42u 108.87s 33:59:07.28 Elapsed: 33:57:38