Params: ./cmzasha --no-stderr --filter 40 19.5 Rfam/Rfam-4.0/cm/RF00008.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00008_Rfam4.0_forwardinf_hmmtype0_Ecoli_0MM.bin hmm data/TryAllCm_5.0/RF00008_Rfam4.0_forwardinf_hmmtype1_Ecoli_0MM.bin Build: release Host: xmen.cs.washington.edu pid: 23111 ----hmm-from-cmFileName: Rfam/Rfam-4.0/cm/RF00008.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/Rfam-4.0/cm/RF00008.cm 1 1 100000 0 cfsqp 0 1 Build: release Host: xmen.cs.washington.edu ;Params: ./cmzasha --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/Rfam-4.0/cm/RF00008.cm 1 1 100000 0 cfsqp 0 1 Build: release Host: xmen.cs.washington.edu ----hmm-from-cmFileName: Rfam/Rfam-4.0/cm/RF00008.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/Rfam-4.0/cm/RF00008.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: xmen.cs.washington.edu ;Params: ./cmzasha --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/Rfam-4.0/cm/RF00008.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: xmen.cs.washington.edu ----cmFile: Rfam/Rfam-4.0/cm/RF00008.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #81281,sp|AJ249781.1|YLI249781 Yarrowia lipolytica nuam gene for NUAM protein ----isReversed: 0 ----hitSequence: AACUGAUGAACUCCAAAGGGUGAACCAUAGAC hit 0 : 4223 4254 (fwd) 19.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGA:::CCA +AG:::GAA:C:+ :G:C 4223 AACUGAUGAACUCCA--AAGGGUGAACCAU-AGAC 4254 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #4923,sp|AJ427941.1|ABI427941 Adalia bipunctata microsatellite DNA, clone Ab18 ----isReversed: 0 ----hitSequence: CCCUGAAGAAGCCGAAGAAAGGUCGAAACGUCGGC hit 1 : 27 61 (fwd) 20.75 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 + CUGA GA G C++A+A+++G CGA CG+ CG C 27 CCCUGAAGAaGCCGAAGAAAGGUCGAAACGU-CGGC 61 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5472,sp|AC007752.6|AC007752 Drosophila melanogaster, chromosome 3R, region 87C-87D, BAC clone BACR07J06, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCCGAGCGCCAAUAAGCGCCAAACUUUGUC hit 2 : 171166 171199 (fwd) 20.45 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG :G G:+CCAA +AG+:C A:AC:+ :GUC 171166 GGCUGCCGAGCGCCAAUAAGCGCCAAACUU-UGUC 171199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5640,sp|AC008318.7|AC008318 Drosophila melanogaster, chromosome 2L, region 21A-21A, BAC clone BACR09J20, complete sequence. ----isReversed: 0 ----hitSequence: AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC hit 3 : 104179 104213 (fwd) 21.18 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::A :C+: +A+:+G: G::AC++ +GUC 104179 AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC 104213 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5877,sp|AC010211.9|AC010211 Drosophila melanogaster, chromosome 3R, region 83D-83D, BAC clone BACR26C09, complete sequence. ----isReversed: 1 ----hitSequence: CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC hit 4 : 46507 46473 (rev) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GA::::: AAU:::::GA: ::C+:: C 131351 CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC 131385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5946,sp|AC011065.6|AC011065 Drosophila melanogaster, chromosome 2L, region 33B-33B, BAC clone BACR37P12, complete sequence. ----isReversed: 0 ----hitSequence: AAGUGACGAGGCGCAAAAACGCAGAAAAUUUUC hit 5 : 114600 114632 (fwd) 19.99 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AA UGA:GA :C+CAAA+A+G: GA:A:: ::UC 114600 AAGUGACGAGGCGCAAAAACGCAGAAAAU--UUUC 114632 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6012,sp|AC016445.4|AC016445 Drosophila melanogaster, chromosome 3R, region 83D-83F, BAC clone BACR19H03, complete sequence. ----isReversed: 1 ----hitSequence: CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC hit 6 : 119977 119943 (rev) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GA::::: AAU:::::GA: ::C+:: C 37165 CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC 37199 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6018,sp|AC018479.2|AC018479 Drosophila melanogaster, chromosome 3R, region 87D-87D, BAC clone BACR09O13, complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCCGAGCGCCAAUAAGCGCCAAACUUUGUC hit 7 : 22118 22151 (fwd) 20.45 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG :G G:+CCAA +AG+:C A:AC:+ :GUC 22118 GGCUGCCGAGCGCCAAUAAGCGCCAAACUU-UGUC 22151 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6087,sp|AC023724.5|AC023724 Drosophila melanogaster X BAC RP98-14B2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AACUGAGUGAUGUUUAUAAUAAAACGAAACUGGAGAC hit 8 : 152181 152145 (rev) 20.21 bits ::::::.<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGA.uGA.GucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA UGA GU::+ AAU+::ACGAA+C ++ G+C 29794 AACUGAgUGAuGUUUAUAAUAAAACGAAACUGGAGAC 29830 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6097,sp|AC023743.4|AC023743 Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AACUGAGUGAUGUUUAUAAUAAAACGAAACUGGAGAC hit 9 : 184670 184706 (fwd) 20.21 bits ::::::.<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGA.uGA.GucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA UGA GU::+ AAU+::ACGAA+C ++ G+C 184670 AACUGAgUGAuGUUUAUAAUAAAACGAAACUGGAGAC 184706 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6310,sp|AC084161.2|AC084161 Caenorhabditis elegans cosmid Y92H12A, complete sequence. ----isReversed: 1 ----hitSequence: AUCUGACAAGUUCUUGAAGAGAACGGAAUGUUCGUC hit 10 : 85181 85146 (rev) 23.64 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A CUGA: AGU:C: +A :G:ACG :A G+UC UC 6640 AUCUGACAAGUUCUUGAaGAGAACGGAAUGUUCGUC 6675 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6399,sp|AC084514.1|AC084514 Caenorhabditis briggsae cosmid G17K04, complete sequence. ----isReversed: 1 ----hitSequence: UACUGACGAUUCGAGAUGAAGAAGAAACAGUUGUG hit 11 : 10752 10718 (rev) 20.65 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 ACUGA:GA U:C:A+A +:G:A GA:AC:+U:GU 15588 UACUGACGA-UUCGAGAugAAGAA-GAAACAGUUGUG 15622 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6567,sp|AC084682.1|AC084682 Caenorhabditis briggsae cosmid G47O06, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGAUGUUUUGCAAAUGCAAGCAAACAUGAAGUC hit 12 : 17062 17027 (rev) 22.63 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 A+CUGAUG::U:+:AAAU:+:A::AAAC:++ :GUC 24408 AGCUGAUGUUUUGCAAAUGCAAGCAAACAUGaAGUC 24443 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6759,sp|AC098576.7|AC098576 Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGACGUCUGUGAUGAGGAUGAAACCGUGUUC hit 13 : 148416 148452 (fwd) 20.87 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUGA UC:: +A ::GA GAAA: +U :UC 148416 AACUGAUGAcGUCUGUGAuGAGGAUGAAACCGUGUUC 148452 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6825,sp|AC104147.4|AC104147 Drosophila melanogaster X BAC RP98-33I18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGACGUCUGUGAUGAGGAUGAAACCGUGUUC hit 14 : 9785 9821 (fwd) 20.87 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUGA UC:: +A ::GA GAAA: +U :UC 9785 AACUGAUGAcGUCUGUGAuGAGGAUGAAACCGUGUUC 9821 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6879,sp|AC108480.3|AC108480 Drosophila melanogaster X BAC RP98-2A13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: AACCGAUGAGUUCCAAGUUGGACGAAUCGUGUGCC hit 15 : 82675 82641 (rev) 23.14 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AAC GAUGAGU:C AA U G:ACGAA C:++:G C 93322 AACCGAUGAGUUCCAAGUUGGACGAAUCGUGUGCC 93356 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6990,sp|U13190.1|AC13190 Angiostrongylus cantonensis clone G-2 retrotransposable element AcT-1. ----isReversed: 0 ----hitSequence: CUCUGAUGAAGACGAAGACGUCGAAACGUUAGCC hit 16 : 1629 1662 (fwd) 20.02 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA G:C++A ++G:CGAA C:+U:G C 1629 CUCUGAUGAaGACGAA--GACGUCGAAACGUUAGCC 1662 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7342,sp|AE001274.1|AE001274 Leishmania major chromosome 1, complete sequence. ----isReversed: 0 ----hitSequence: UCCUGAUGAGCACGACCGUGCGAAGCGGCGAC hit 17 : 249264 249295 (fwd) 19.55 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG::C A G::CGAA:CG+ CG:C 249264 UCCUGAUGAGCACGA--CCGUGCGAAGCGG-CGAC 249295 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7438,sp|AE003422.2|AE003422 Drosophila melanogaster chromosome X section 6 of 74 of the complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGACGUCUGUGAUGAGGAUGAAACCGUGUUC hit 18 : 52075 52111 (fwd) 20.87 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUGA UC:: +A ::GA GAAA: +U :UC 52075 AACUGAUGAcGUCUGUGAuGAGGAUGAAACCGUGUUC 52111 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7443,sp|AE003427.2|AE003427 Drosophila melanogaster chromosome X section 11 of 74 of the complete sequence. ----isReversed: 0 ----hitSequence: AACCGAUGAGUUCCAAGUUGGACGAAUCGUGUGCC hit 19 : 121740 121774 (fwd) 23.14 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AAC GAUGAGU:C AA U G:ACGAA C:++:G C 121740 AACCGAUGAGUUCCAAGUUGGACGAAUCGUGUGCC 121774 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7461,sp|AE003445.2|AE003445 Drosophila melanogaster chromosome X section 29 of 74 of the complete sequence. ----isReversed: 0 ----hitSequence: AACUGAGUGAUGUUUAUAAUAAAACGAAACUGGAGAC hit 20 : 2142 2178 (fwd) 20.21 bits ::::::.<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGA.uGA.GucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA UGA GU::+ AAU+::ACGAA+C ++ G+C 2142 AACUGAgUGAuGUUUAUAAUAAAACGAAACUGGAGAC 2178 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7606,sp|AE003590.3|AE003590 Drosophila melanogaster chromosome 2L section 1 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC hit 21 : 113537 113571 (fwd) 21.18 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::A :C+: +A+:+G: G::AC++ +GUC 113537 AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC 113571 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7616,sp|AE003600.3|AE003600 Drosophila melanogaster chromosome 3R, section 8 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC hit 22 : 228572 228606 (fwd) 19.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GA::::: AAU:::::GA: ::C+:: C 228572 CGCUGACGAACAUCUAAUGGUGGGAAACACGUUGC 228606 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7650,sp|AE003634.2|AE003634 Drosophila melanogaster chromosome 2L section 43 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: AAGUGACGAGGCGCAAAAACGCAGAAAAUUUUC hit 23 : 149369 149401 (fwd) 19.99 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AA UGA:GA :C+CAAA+A+G: GA:A:: ::UC 149369 AAGUGACGAGGCGCAAAAACGCAGAAAAU--UUUC 149401 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7713,sp|AE003697.4|AE003697 Drosophila melanogaster chromosome 3R, section 35 of 118 of the complete sequence. ----isReversed: 0 ----hitSequence: GGCUGCCGAGCGCCAAUAAGCGCCAAACUUUGUC hit 24 : 33807 33840 (fwd) 20.45 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG :G G:+CCAA +AG+:C A:AC:+ :GUC 33807 GGCUGCCGAGCGCCAAUAAGCGCCAAACUU-UGUC 33840 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7873,sp|AE014825.1|AE014825 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGAAGAUGGUGAUACAUCUGAAACUUUUGUA hit 25 : 219957 219993 (fwd) 21.81 bits ::::::<<<.<<<<<____>>>>>.>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaC.GAaACgcucGUC 35 AACUGAUGA G::+: +AU:+::C GAAAC:+U:GU 219957 AACUGAUGAaGAUGGUGAUACAUCuGAAACUUUUGUA 219993 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10954,sp|AF036389.1|AF036389 Schistosoma haematobium clone Sh1 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAACAGGACGAAACGCGCGUC hit 26 : 124 158 (fwd) 42.62 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAA AGGACGA:ACGC+CGUC 124 AGCUGACGAGUCCCAAACAGGACGAAACGCGCGUC 158 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10955,sp|AF036390.1|AF036390 Schistosoma haematobium clone Sh2 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACGAGUGCCCAAUAGGAGGAAACGCGCGUC hit 27 : 122 156 (fwd) 33.27 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GA U CC AAUAG A GA:ACGC+CGUC 122 AACUGACGAGUGCCCAAUAGGAGGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10956,sp|AF036391.1|AF036391 Schistosoma haematobium clone Sh4 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUC hit 28 : 125 159 (fwd) 38.16 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GA U CCAAAUAG A GA:ACGC+CGUC 125 AACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10957,sp|AF036392.1|AF036392 Schistosoma haematobium clone Sh5 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACGAGCGCCAAAUAGGAGGAAACGCGCGUC hit 29 : 125 159 (fwd) 33.67 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GA CCAAAUAG GA:ACGC+CGUC 125 AACUGACGAGCGCCAAAUAGGAGGAAACGCGCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10958,sp|AF036393.1|AF036393 Schistosoma haematobium clone Sh6 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAACAGGACGAAACGAGAGUC hit 30 : 123 157 (fwd) 36.57 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAA AGGACGA:AC: +:GUC 123 AGCUGACGAGUCCCAAACAGGACGAAACGAGAGUC 157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10959,sp|AF036394.1|AF036394 Schistosoma haematobium clone Sh7 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGUGUCCCAAACAGCACGAAACGCGCGUC hit 31 : 122 156 (fwd) 33.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:G:GU CCAAA AG AC:A:ACGC+CGUC 122 AGCUGACGUGUCCCAAACAGCACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10960,sp|AF036395.1|AF036395 Schistosoma haematobium clone Sh8 satellite sequence. ----isReversed: 0 ----hitSequence: GGCUGACGAGUCCCAAACAGGACGAAACGCGCGUC hit 32 : 123 157 (fwd) 41.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA:GAGUCCCAAA AGGACGA:ACGC+CGUC 123 GGCUGACGAGUCCCAAACAGGACGAAACGCGCGUC 157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10961,sp|AF036396.1|AF036396 Schistosoma haematobium clone Sh9 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUC hit 33 : 125 159 (fwd) 38.16 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA:GA U CCAAAUAG A GA:ACGC+CGUC 125 AACUGACGAGUGCCAAAUAGGAGGAAACGCGCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10962,sp|AF036397.1|AF036397 Schistosoma haematobium clone Sh10 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAACAGCACGAAACGCGCGUC hit 34 : 123 157 (fwd) 38.24 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CCAAA AG ACGA:ACGC+CGUC 123 AGCUGACGAGUCCCAAACAGCACGAAACGCGCGUC 157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10963,sp|AF036398.1|AF036398 Schistosoma haematobium clone Sh12 satellite sequence. ----isReversed: 0 ----hitSequence: UUCUGACGAGUUUCAAAUAGGACGAAACGCGUGUC hit 35 : 62 96 (fwd) 32.36 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA:GAGU::CAAAUA::ACGA:AC:C+:GUC 62 UUCUGACGAGUUUCAAAUAGGACGAAACGCGUGUC 96 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10964,sp|AF036399.1|AF036399 Schistosomatium douthitti clone Sd1 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUC hit 36 : 127 161 (fwd) 39.21 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CCAAAUAG ACGA:A:GC+C:UC 127 AGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10965,sp|AF036400.1|AF036400 Schistosomatium douthitti clone Sd2 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUGCCAAAUAGGACGAAAUGUGCAUC hit 37 : 127 161 (fwd) 38.70 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CCAAAUAG ACGA:A:G++C:UC 127 AGCUGACGAGUGCCAAAUAGGACGAAAUGUGCAUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10966,sp|AF036401.1|AF036401 Schistosomatium douthitti clone Sd3 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAAUGCGCAUC hit 38 : 127 161 (fwd) 42.42 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:A:GC+C:UC 127 AGCUGACGAGUCCCAAAUAGGACGAAAUGCGCAUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10967,sp|AF036402.1|AF036402 Schistosomatium douthitti clone Sd4 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUGCCAAAUACGACGAAAUGCGCAUC hit 39 : 127 161 (fwd) 34.34 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CAAAUA ACGA:A:GC+C:UC 127 AGCUGACGAGUGCCAAAUACGACGAAAUGCGCAUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #10969,sp|AF036404.1|AF036404 Schistosomatium douthitti clone Sd6 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUC hit 40 : 126 160 (fwd) 39.21 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU CCAAAUAG ACGA:A:GC+C:UC 126 AGCUGACGAGUGCCAAAUAGGACGAAAUGCGCAUC 160 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11073,sp|AF036695.2|AF036695 Caenorhabditis elegans cosmid F16B3, complete sequence. ----isReversed: 1 ----hitSequence: CCCUGAUGACUUCUAUAGUACGAAAUCCGAUC hit 41 : 23459 23428 (rev) 22.40 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA U C:A U:G A GAAA:+C+ :UC 13360 CCCUGAUGACUUCUA--UAGUACGAAAUCCG-AUC 13391 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11099,sp|AF036739.1|AF036739 Schistosoma mansoni clone Sm1 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC hit 42 : 122 156 (fwd) 45.25 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11100,sp|AF036740.1|AF036740 Schistosoma mansoni clone Sm3 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUCACGAGUCCCAAAUAGGACGAAACGCGUC hit 43 : 121 153 (fwd) 35.38 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CU A:GAGUCCCAAAUAGGACGA:ACG CGUC 121 AGCUCACGAGUCCCAAAUAGGACGAAACG--CGUC 153 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11101,sp|AF036741.1|AF036741 Schistosoma mansoni clone Sm4 satellite sequence. ----isReversed: 0 ----hitSequence: AGCCGACGAGUCCCAAAUAAAACGAAACGCGCGUC hit 44 : 122 156 (fwd) 33.95 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+C GA:GAGU CAAAUA ACGA:ACGC+CGUC 122 AGCCGACGAGUCCCAAAUAAAACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11102,sp|AF036742.1|AF036742 Schistosoma mansoni clone Sm5 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC hit 45 : 122 156 (fwd) 45.25 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11103,sp|AF036743.1|AF036743 Schistosoma mansoni clone Sm6 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAGUGACGCGCGUC hit 46 : 122 159 (fwd) 34.83 bits ::::::<<<<<<<<____>>>>>>>>...<<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAa...ACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA: ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACGAAgugACGCGCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11104,sp|AF036744.1|AF036744 Schistosoma mansoni clone Sm7 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC hit 47 : 122 156 (fwd) 45.25 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11105,sp|AF036745.1|AF036745 Schistosoma mansoni clone Sm8 satellite sequence. ----isReversed: 0 ----hitSequence: AACUGACCAGUCGGAAAUAGGACGAAACGCGCGUC hit 48 : 123 157 (fwd) 36.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::AGUC+:AAAU:+GACG::ACGC+CGUC 123 AACUGACCAGUCGGAAAUAGGACGAAACGCGCGUC 157 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11106,sp|AF036746.1|AF036746 Schistosoma mansoni clone Sm9 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACCAGUCGGAAAUAGGACGAAACGCGCGUC hit 49 : 117 151 (fwd) 36.19 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA::AGUC+:AAAU:+GACG::ACGC+CGUC 117 AGCUGACCAGUCGGAAAUAGGACGAAACGCGCGUC 151 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11107,sp|AF036747.1|AF036747 Schistosoma mansoni clone Sm10 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGCGAAACGCGCGUC hit 50 : 121 154 (fwd) 33.90 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGG CGA:ACGC+CGUC 121 AGCUGACGAGUCCCAAAUAGG-CGAAACGCGCGUC 154 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11108,sp|AF036748.1|AF036748 Schistosoma mansoni clone Sm12 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCUAAAUAGGGUGAAACGCGCGUC hit 51 : 124 158 (fwd) 35.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GA CC:AAAU:GG GA:ACGC+CGUC 124 AGCUGACGAGUCCUAAAUAGGGUGAAACGCGCGUC 158 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11109,sp|AF036749.1|AF036749 Schistosoma mansoni clone Sm13 satellite sequence. ----isReversed: 0 ----hitSequence: AACAGACGAGUCCCAAAUAGGACGAAGUGACGCGCGUC hit 52 : 124 161 (fwd) 30.26 bits ::::::<<<<<<<<____>>>>>>>>...<<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAa...ACgcucGUC 35 AAC GA:GAGUCCCAAAUAGGACGA: ACGC+CGUC 124 AACAGACGAGUCCCAAAUAGGACGAAgugACGCGCGUC 161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11110,sp|AF036750.1|AF036750 Schistosoma mansoni clone Sm14 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAAUCGCGUC hit 53 : 123 156 (fwd) 35.19 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:A :+ : UC 123 AGCUGACGAGUCCCAAAUAGGACGAAAUCG-CGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11111,sp|AF036751.1|AF036751 Schistosoma mansoni clone Sm15 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAACGCACUUC hit 54 : 122 155 (fwd) 33.22 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA: :GC C:UC 122 AGCUGACGAGUCCCAAAUAGGACGAA-CGCACUUC 155 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11112,sp|AF036752.1|AF036752 Schistosoma mansoni clone Sm16 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACUUGACGCGCGUC hit 55 : 122 156 (fwd) 32.49 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA: :GUCCCAAAUAGGAC: :ACGC+CGUC 122 AGCUGACGAGUCCCAAAUAGGACUUGACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11113,sp|AF036753.1|AF036753 Schistosoma mansoni clone Sm17 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACCGUCGGAAAUAGGACGAAACGCGCGUC hit 56 : 122 155 (fwd) 24.19 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:: GUC+:AAAU:+GACG::ACGC+CGUC 122 AGCUGACC-GUCGGAAAUAGGACGAAACGCGCGUC 155 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11114,sp|AF036754.1|AF036754 Schistosoma mansoni clone Sm18 satellite sequence. ----isReversed: 0 ----hitSequence: AGUUGACGAGUCCCAAAUUGGACGAAACGCGCGUC hit 57 : 95 129 (fwd) 35.94 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+ UGA:GAGUCC AAAU GGACGA:ACGC+CGUC 95 AGUUGACGAGUCCCAAAUUGGACGAAACGCGCGUC 129 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11115,sp|AF036755.1|AF036755 Schistosoma mansoni clone Sm19 satellite sequence. ----isReversed: 0 ----hitSequence: NGCUGACGNGUCCCAAAUAGGACGGAAGGCGCGUC hit 58 : 122 156 (fwd) 31.82 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA: GUCCCAAAUAGGAC :A GC+C UC 122 NGCUGACGNGUCCCAAAUAGGACGGAAGGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11116,sp|AF036756.1|AF036756 Schistosoma mansoni clone Sm20 satellite sequence. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAGUAGGACGAAACGCGCGUC hit 59 : 122 156 (fwd) 42.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAA UAGGACGA:ACGC+CGUC 122 AGCUGACGAGUCCCAAGUAGGACGAAACGCGCGUC 156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #12834,sp|AF061797.1|AF061797 Eptatretus stouti 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. ----isReversed: 0 ----hitSequence: GACUGACGAGAGGCAUUGGGGCCGAAACGGCUUC hit 60 : 2399 2432 (fwd) 21.11 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGA:GAG +:A :+ CGA:A:G+ C:UC 2399 GACUGACGAGAGGCAUUGGGGCCGAAACGG-CUUC 2432 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16307,sp|AF109181.1|AF109181 Schistosoma mansoni SPO-1 protein (SPO-1) gene, complete cds. ----isReversed: 1 ----hitSequence: UACUGAAGAGUUCCACAAUAGGACGAAACGGCGA hit 61 : 630 597 (rev) 21.27 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 ACUGA GAGU:CCA A UAG:ACGA +CG+ CG+ 3227 UACUGAAGAGUUCCACAaUAGGACGAAACGG-CGA- 3260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #25905,sp|AF213692.1|AF213692 Schistosoma japonicum Sj-alpha-1 retroposon-like sequence. ----isReversed: 0 ----hitSequence: AGCCGAUGAGUUCCAAACAGGACUAAACGCGCUUC hit 62 : 357 391 (fwd) 30.50 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+C GAUG:GU:CCAAA AG:AC:AAA:GC+C:UC 357 AGCCGAUGAGUUCCAAACAGGACUAAACGCGCUUC 391 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #25906,sp|AF213693.1|AF213693 Schistosoma japonicum Sj-alpha-2 retroposon-like sequence. ----isReversed: 0 ----hitSequence: AACCGAUGAGUCCCAAAUAGAACGAAACCUGCGUC hit 63 : 188 222 (fwd) 36.71 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AAC GAUGAGU CCAAAUAG ACGAAAC:++:GUC 188 AACCGAUGAGUCCCAAAUAGAACGAAACCUGCGUC 222 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #44463,sp|AF419171.1|AF419171 Caenorhabditis elegans protein tyrosine kinase (src-1) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AUCUGACAAGUUCUUGAAGAGAACGGAAUGUUCGUC hit 64 : 758 723 (rev) 23.64 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A CUGA: AGU:C: +A :G:ACG :A G+UC UC 1858 AUCUGACAAGUUCUUGAaGAGAACGGAAUGUUCGUC 1893 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #1412,sp|AF475094.1|AF475094 Caenorhabditis elegans SRC-1 (src-1) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AUCUGACAAGUUCUUGAAGAGAACGGAAUGUUCGUC hit 65 : 661 626 (rev) 23.64 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A CUGA: AGU:C: +A :G:ACG :A G+UC UC 942 AUCUGACAAGUUCUUGAaGAGAACGGAAUGUUCGUC 977 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #16801,sp|AY028787.1|AY028787 Schistosoma mansoni FTZ-F1 nuclear receptor-like protein (ftz-f1) gene, complete cds, alternatively spliced. ----isReversed: 0 ----hitSequence: UGCUGACGAGUAUUAGCUAGCACGAAACUUACGUC hit 66 : 14875 14909 (fwd) 24.72 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA:GAGU ::A+ U:: ACGA:AC + GUC 14875 UGCUGACGAGUAUUAGCUAGCACGAAACUUACGUC 14909 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #16801,sp|AY028787.1|AY028787 Schistosoma mansoni FTZ-F1 nuclear receptor-like protein (ftz-f1) gene, complete cds, alternatively spliced. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAACGGUACGAAACUGGCGUC hit 67 : 23625 23659 (fwd) 32.16 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGU C:AAA :G ACGA:AC ++ GUC 23625 AGCUGACGAGUCCCAAACGGUACGAAACUGGCGUC 23659 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #17507,sp|AY043292.1|AY043292 Tribolium castaneum strain GA-2 HOMC gene cluster, partial sequence. ----isReversed: 1 ----hitSequence: GCCUGAUGAUGAUUUAAAUAAAAUCGAAACGUC hit 68 : 89814 89782 (rev) 19.78 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 CUGAUGA G::::AAA +::::CGAAAC GUC 20810 GCCUGAUGAuGAUUUAAAuAAAAUCGAAAC----GUC 20842 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #17508,sp|AY043293.1|AY043293 Tribolium castaneum strain GA-1 HOMC gene cluster, partial sequence. ----isReversed: 0 ----hitSequence: GUCUGAAGAUGCUUUAAAUAAAGCGAAACCGGUUA hit 69 : 11932 11966 (fwd) 20.85 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 CUGA GA G::::AAAU::::CGA A:+++ :U 11932 GUCUGAAGAuGCUUUAAAUAAAGCGAAACCGG-UUA 11966 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #18499,sp|AY051518.1|AY051518 Drosophila melanogaster GH17311 full length cDNA. ----isReversed: 0 ----hitSequence: AACUGAGUGAUGUUUAUAAUAAAACGAAACUGGAGAC hit 70 : 1797 1833 (fwd) 20.21 bits ::::::.<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGA.uGA.GucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA UGA GU::+ AAU+::ACGAA+C ++ G+C 1797 AACUGAgUGAuGUUUAUAAUAAAACGAAACUGGAGAC 1833 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #18899,sp|AY051918.1|AY051918 Drosophila melanogaster LD40460 full length cDNA. ----isReversed: 0 ----hitSequence: AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC hit 71 : 1394 1428 (fwd) 21.18 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::A :C+: +A+:+G: G::AC++ +GUC 1394 AACUGACUAGACGCUGAAGCGUUGCAACCGCAGUC 1428 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----sequence: #33135,sp|AY176645.2|AY176645 Cherax quadricarinatus cellulase GHF9 (EG) gene, EG-A allele, partial cds. ----isReversed: 0 ----hitSequence: GACUGAUGAAGCCACUGUGUGGCGAAACGUUUCCUC hit 72 : 3919 3954 (fwd) 20.21 bits ::::::<<<.<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcu.cGUC 35 ACUGAUGA G:C:: + U::G:CGAAA G+U C UC 3919 GACUGAUGAaGCCACUG-UGUGGCGAAACGUUuCCUC 3954 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #778,sp|AL021107.1|DMC30B7 Drosophila melanogaster cosmid clone 30B7 ----isReversed: 0 ----hitSequence: AACUGAUGACGUCUGUGAUGAGGAUGAAACCGUGUUC hit 73 : 25899 25935 (fwd) 20.87 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUGA UC:: +A ::GA GAAA: +U :UC 25899 AACUGAUGAcGUCUGUGAuGAGGAUGAAACCGUGUUC 25935 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5722,sp|Z69699.1|DSBDOPCR2 D.schiavazzii satellite DNA (clone bdopcr2) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 74 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5723,sp|Z69698.1|DSBDOPCR3 D.schiavazzii satellite DNA (clone bdopcr3) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 75 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5725,sp|Z69701.1|DSBDOPCR5 D.schiavazzii satellite DNA (clone bdopcr5) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 76 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5726,sp|Z69702.1|DSBDOPCR6 D.schiavazzii satellite DNA (clone bdopcr6) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 77 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5727,sp|Z69703.1|DSBDOPCR7 D.schiavazzii satellite DNA (clone bdopcr7) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 78 : 347 381 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 347 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 381 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5759,sp|Z69691.1|DSCPSPCR1 D.schiavazzii satellite DNA (clone cpspcr1) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 79 : 346 380 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5760,sp|Z69692.1|DSCPSPCR2 D.schiavazzii satellite DNA (clone cpspcr2) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 80 : 347 381 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 347 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 381 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5762,sp|Z69694.1|DSCPSPCR4 D.schiavazzii satellite DNA (clone cpspcr4) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 81 : 346 380 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5763,sp|Z69695.1|DSCPSPCR5 D.schiavazzii satellite DNA (clone cpspcr5) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 82 : 349 383 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 349 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 383 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #5764,sp|Z69696.1|DSCPSPCR6 D.schiavazzii satellite DNA (clone cpspcr6) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 83 : 345 379 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 345 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 379 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6267,sp|Z69685.1|DSVETPCR1 D.schiavazzii satellite DNA (clone vetpcr1) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 84 : 346 380 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6268,sp|Z69686.1|DSVETPCR2 D.schiavazzii satellite DNA (clone vetpcr2) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGAC hit 85 : 346 380 (fwd) 25.97 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ :+U: +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6269,sp|Z69688.1|DSVETPCR3 D.schiavazzii satellite DNA (clone vetpcr3) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 86 : 269 303 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 269 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 303 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6271,sp|Z69690.1|DSVETPCR5 D.schiavazzii satellite DNA (clone vetpcr5) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC hit 87 : 346 380 (fwd) 22.98 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ +U +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUCGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #6276,sp|Z69687.1|DSVTPCR2B D.schiavazzii satellite DNA (clone vetpcr2) ----isReversed: 0 ----hitSequence: CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGAC hit 88 : 346 380 (fwd) 25.97 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGAUGAG::C+ + ++G::CGAA+ :+U: +C 346 CGCUGAUGAGGUCAGGGAAGACCGAAAGUGUUGAC 380 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12345,sp|AJ271365.2|MED271365 Mytilus edulis gene for endo-1,4-mannanase, exons 1-6 ----isReversed: 1 ----hitSequence: CACUGAUGAGUUUUUUGUAGACGAAACGCGUGUC hit 89 : 4911 4878 (rev) 23.00 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGU::: :::ACGAAAC:C+:GUC 299 CACUGAUGAGUUUUUU-GUAGACGAAACGCGUGUC 332 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #12346,sp|AJ308548.1|MED308548 Mytilus edulis eg gene for endo-1,4-beta-D-glucanase, exons 1-3 ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUUUUGUAGACGGAACGCGCGUC hit 90 : 3159 3192 (fwd) 24.40 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAU AGUC:: ::GACG AACGC+CGUC 3159 CACUGAUGAGUCUUUU-GUAGACGGAACGCGCGUC 3192 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #19925,sp|S80278.1|S80278 {tandem repetitive sequence} [Opisthorchis viverrini, Genomic, 333 nt]. ----isReversed: 0 ----hitSequence: ACCUGAUAGCCCCGAGAAGGGCGAAACCGGUC hit 91 : 131 162 (fwd) 19.56 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAU AG:CCC A +AGG:CGAAAC++ GUC 131 ACCUGAU-AGCCCCGAGAAGGGCGAAACCG--GUC 162 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20854,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: UGCUGAGGAGUCCCACAAUAGGACGAAACGACCGUC hit 92 : 747 782 (fwd) 27.15 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GAGUCCCA A UAGGACGA:ACG CGUC 747 UGCUGAGGAGUCCCACAaUAGGACGAAACGACCGUC 782 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20854,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: AGUUGAUGAGUCCCAGAGAAGGACGAAACGUGCAUC hit 93 : 1483 1518 (fwd) 32.36 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+ UGAUGAGUCCCA+A +AGGACGAAA G++C UC 1483 AGUUGAUGAGUCCCAGAgAAGGACGAAACGUGCAUC 1518 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20854,sp|D87492.1|SMD492 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: UGCUGAGGAGUCCCAUAAUAGGACGAAACGGCCGUC hit 94 : 2151 2186 (fwd) 33.50 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GAGUCCCA A UAGGACGA:ACG+ CGUC 2151 UGCUGAGGAGUCCCAUAaUAGGACGAAACGGCCGUC 2186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20855,sp|D87493.1|SMD493 Schistosoma mansoni DNA for repeat sequences. ----isReversed: 0 ----hitSequence: UUCUGAAGAGUCCCAUGCUAGGACGAAACAGCCUUC hit 95 : 3568 3603 (fwd) 24.92 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 CUGA GAGUCCCA UAGGACGA A::+ ::UC 3568 UUCUGAAGAGUCCCAUGcUAGGACGAAACAGCCUUC 3603 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20889,sp|L23117.1|SMGLUSTRB Schistosoma mansoni glutathione S-transferase gene, protein bind region. ----isReversed: 0 ----hitSequence: UGCUGAGGAGUCCCACAAUAGGGCGAUACGGACGUC hit 96 : 1028 1063 (fwd) 26.71 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GAG CCCA A UAGG CGA:ACG+ CGUC 1028 UGCUGAGGAGUCCCACAaUAGGGCGAUACGGACGUC 1063 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20895,sp|M98271.1|SMGSTM Schistosoma mansoni 28 kDa glutathione S-transferase (GST) gene, complete cds. ----isReversed: 0 ----hitSequence: UGCUGAGGAGUCCCACAAUAGGGCGAUACGGACGUC hit 97 : 12 47 (fwd) 26.71 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GAG CCCA A UAGG CGA:ACG+ CGUC 12 UGCUGAGGAGUCCCACAaUAGGGCGAUACGGACGUC 47 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20942,sp|L07513.1|SMMTEGANT Schistosoma mansoni major tegumental antigen SM15 (GSM70) gene, complete cds. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCGAAUAGGAGGAAGUGCUC hit 98 : 250 281 (fwd) 22.07 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GA UCCC AAUAGGA GA: G++C UC 250 AGCUGACGAGUCCCGAAUAGGAGGAA--GUGC-UC 281 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20942,sp|L07513.1|SMMTEGANT Schistosoma mansoni major tegumental antigen SM15 (GSM70) gene, complete cds. ----isReversed: 1 ----hitSequence: AAAUGACGAGUCCUAAAUGGAACUAAACACAUGUG hit 99 : 80 46 (rev) 20.85 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AA UGA:G:GU C:AAAU:G AC:A:AC:C :GU 4621 AAAUGACGAGUCCUAAAUGGAACUAAACACAUGUG 4655 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20962,sp|X15619.1|SMRED1 Schistosoma mansoni repetitive DNA element d-1 of SM(alpha) family ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUC hit 100 : 125 159 (fwd) 45.35 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGCUCGUC 125 AGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20964,sp|X15621.1|SMRED3 Schistosoma mansoni repetitive DNA element d-3 of SM(alpha) family ----isReversed: 0 ----hitSequence: CCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUC hit 101 : 104 138 (fwd) 19.71 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + UGA: AGUC:C AAUA:GACG :A G++C UC 104 CCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUC 138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20964,sp|X15621.1|SMRED3 Schistosoma mansoni repetitive DNA element d-3 of SM(alpha) family ----isReversed: 1 ----hitSequence: AGCUGACGAGUCCCAAAUAAGACGAACGCGCGUC hit 102 : 72 39 (rev) 32.04 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUC CAAAUA GACGA: CGC+CGUC 222 AGCUGACGAGUCCCAAAUAAGACGAA-CGCGCGUC 255 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20966,sp|X15618.1|SMRET2 Schistosoma mansoni repetitive DNA element t-2 of SM(alpha) family ----isReversed: 0 ----hitSequence: AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC hit 103 : 140 174 (fwd) 33.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::AGUC+ AAAU +GACG::ACGC+CGUC 140 AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC 174 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20976,sp|M27676.1|SMRSRLA S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC hit 104 : 137 171 (fwd) 45.25 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGC+CGUC 137 AGCUGACGAGUCCCAAAUAGGACGAAACGCGCGUC 171 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20977,sp|M27677.1|SMRSRLB S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC hit 105 : 140 174 (fwd) 33.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::AGUC+ AAAU +GACG::ACGC+CGUC 140 AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC 174 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20978,sp|M27678.1|SMRSRLC S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: AGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUC hit 106 : 125 159 (fwd) 45.35 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUCCCAAAUAGGACGA:ACGCUCGUC 125 AGCUGACGAGUCCCAAAUAGGACGAAACGCUCGUC 159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20980,sp|M27680.1|SMRSRLE S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 0 ----hitSequence: CCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUC hit 107 : 104 138 (fwd) 19.71 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + UGA: AGUC:C AAUA:GACG :A G++C UC 104 CCGUGACAAGUCUCGAAUAGGACGAAAUGUGCGUC 138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20980,sp|M27680.1|SMRSRLE S.mansoni retroposon-like repetitive DNA element DNA. ----isReversed: 1 ----hitSequence: AGCUGACGAGUCCCAAAUAAGACGAACGCGCGUC hit 108 : 72 39 (rev) 32.04 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:GAGUC CAAAUA GACGA: CGC+CGUC 222 AGCUGACGAGUCCCAAAUAAGACGAA-CGCGCGUC 255 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----sequence: #20983,sp|M19148.1|SMSATA S.mansoni satellite DNA repeat. ----isReversed: 0 ----hitSequence: AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC hit 109 : 164 198 (fwd) 33.54 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::AGUC+ AAAU +GACG::ACGC+CGUC 164 AACUGACCAGUCGGAAAUUGGACGAAACGCGCGUC 198 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #7057,sp|AC091297.3|AC091297 Sus scrofa clone RP44-52N13, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAAGUUCCCAGACAAGGGAUCAAACUCUUGUC hit 110 : 70983 70948 (rev) 20.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA G :UCC:A+A +:GGA: A AC:CU:GUC 71075 CACUGAAG-UUCCCAGAcaAGGGAUCAAACUCUUGUC 71110 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #11938,sp|AF109199.1|AF109199 Bos taurus chloride channel protein p64 mRNA, complete cds. ----isReversed: 0 ----hitSequence: UGCUGACGAUGUUUCAGAAGGAAACGAAUCGGCUUC hit 111 : 600 635 (fwd) 22.18 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GA GU:::A+A :::ACGA: :G+ C: C 600 UGCUGACGAuGUUUCAGAaGGAAACGAAUCGG-CUUC 635 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #30947,sp|AY187092.1|AY187092 Equus caballus membrane-associated transporter protein (MATP) gene, exon 1. ----isReversed: 0 ----hitSequence: UUCUGAGGAUUUUAAGAUAGGAUGAAAUUUUUAUC hit 112 : 1269 1303 (fwd) 21.20 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA:GA:U::+A+AU+::A:GA:A::+U::UC 1269 UUCUGAGGAUUUUAAGAUAGGAUGAAAUUUUUAUC 1303 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----sequence: #35273,sp|L16547.1|BTCCP64A Bovine chlorine channel protein (p64) mRNA, complete cds. ----isReversed: 0 ----hitSequence: UGCUGACGAUGUUUCAGAAGGAAACGAAUCGGCUUC hit 113 : 707 742 (fwd) 22.18 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGA:GA GU:::A+A :::ACGA: :G+ C: C 707 UGCUGACGAuGUUUCAGAaGGAAACGAAUCGG-CUUC 742 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #2828,sp|AB053218.1|AB053218 Mus musculus mRNA for N-acetylglucosaminyltransferase IVb, complete cds. ----isReversed: 0 ----hitSequence: GCCUGAAGCGCUCCAAGGAGCUAAACCUGGUG hit 114 : 180 211 (fwd) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA G:G::C:A +:G::C:A AC+++ GU 180 GCCUGAAGCGCUCCA--AGGAGCUAAACCUG-GUG 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #2829,sp|AB053219.1|AB053219 Mus musculus gene for N-acetylglucosaminyltrasnferase IVb, complete cds. ----isReversed: 0 ----hitSequence: GCCUGAAGCGCUCCAAGGAGCUAAACCUGGUG hit 115 : 5116 5147 (fwd) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA G:G::C:A +:G::C:A AC+++ GU 5116 GCCUGAAGCGCUCCA--AGGAGCUAAACCUG-GUG 5147 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4619,sp|AC019028.13|AC019028 Mus musculus, clone RP23-88A22, complete sequence. ----isReversed: 0 ----hitSequence: ACCUGAGGAGUUCCAAACUUAGAACAAAACUCUUC hit 116 : 188841 188875 (fwd) 21.16 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 A CUGA:G GU:CCAAA UAG:AC A:A: :UC 188841 ACCUGAGGAGUUCCAAAcuUAGAACAAAACU--CUUC 188875 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4644,sp|AC023248.20|AC023248 Mus musculus, clone RP23-124B2, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCUGAGGACGACAGUGAGACUCAUGUC hit 117 : 166102 166137 (fwd) 20.11 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA:GA ::++ +A ++:: GA:AC:C :GUC 166102 AGCUGAGGAGCUGAGGAcGACAGUGAGACUCAUGUC 166137 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4978,sp|AC091522.23|AC091522 Mus musculus chromosome 10 clone rp23-199g2 strain C57BL/6J, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGAUUUUUAAAAAAAAAGAAUCACUUUA hit 118 : 35404 35371 (rev) 19.91 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGA:U:::AAA+:::A:GAA ::CU:: 179395 AACUGAUGAUUUUUAAAAAAAAAGAAUCACUUUA- 179428 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #4981,sp|AC091533.27|AC091533 Mus musculus chromosome 11 clone rp23-30n4 strain C57BL/6J, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGAAGCGCUCCAAGGAGCUAAACCUGGUG hit 119 : 67715 67684 (rev) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA G:G::C:A +:G::C:A AC+++ GU 124914 GCCUGAAGCGCUCCA--AGGAGCUAAACCUG-GUG 124945 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5043,sp|AC096625.24|AC096625 Mus musculus clone rp23-388i7 map 1 strain C57BL/6J, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGGUGAAUCCGAGAGGAUGAAAUGCCAUC hit 120 : 143051 143020 (rev) 20.10 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUG UGA:UCC:A :GGA:GAAA:GC C:UC 48365 GGCUGGUGAAUCCGA--GAGGAUGAAAUGC-CAUC 48396 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5199,sp|AC102255.10|AC102255 Mus musculus, clone RP24-182H11, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGGUGAGUUCUAACCAACGAAACACUUGUC hit 121 : 184048 184016 (rev) 20.08 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUG UGAGU: :A +: :ACGAAAC:CU:GUC 11228 GCCUGGUGAGUUCUA--ACCAACGAAACACUUGUC 11260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5400,sp|AC112149.4|AC112149 Mus musculus chromosome 10 clone RP23-186F18, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGUGGACAUAGAAAGCCCCAAACUGUUGUA hit 122 : 82548 82513 (rev) 19.86 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUG:G: C+ A ++G :C:AAAC:+U:GU 112837 AACUGAUGUGGACAUAGaAAGCCCCAAACUGUUGUA 112872 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5542,sp|AC116325.5|AC116325 Mus musculus chromosome 10 clone RP23-295K3, complete sequence. ----isReversed: 0 ----hitSequence: AACUGACCAAAUUGAUAAAUUGAAACUUUUUUC hit 123 : 182773 182805 (fwd) 20.21 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA::A:::::A U:::::G::A::+U::UC 182773 AACUGACCAAAUUGA--UAAAUUGAAACUUUUUUC 182805 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5702,sp|AC119234.10|AC119234 Mus musculus, clone RP24-211P24, complete sequence. ----isReversed: 1 ----hitSequence: GACUGAUGAGUUUAAAAAAAAAAUCAAAACUGUUUC hit 124 : 32339 32304 (rev) 19.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 ACUGAUG G ::+AAA ++:: C AAA::+ ::UC 111494 GACUGAUGAGUUUAAAAaaAAAAUCAAAACUG-UUUC 111529 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5767,sp|AC121597.2|AC121597 Mus musculus chromosome 9 clone RP23-300D5, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAAGAGGUUCAAAGAAACAGAAAGGGAUAUC hit 125 : 137058 137092 (fwd) 20.50 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA GA :::CAAA A::: GA A :+ : UC 137058 AACUGAAGAGGUUCAAAGAAACAGAAAGGGAUAUC 137092 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5824,sp|AC121825.3|AC121825 Mus musculus chromosome 3 clone RP23-469H5, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGACUCCGGGAGAGGAAUAAUCAGGUUUC hit 126 : 44937 44971 (fwd) 19.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUG: UCC: +A :GGA :AA ::++:: C 44937 AACUGAUGACUCCGGGAGAGGAAUAAUCAGGUUUC 44971 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #5870,sp|AC121881.3|AC121881 Mus musculus chromosome 8 clone RP24-134L8, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGAGCUCUAGAAUGACGUAAACUGUUGAC hit 127 : 165532 165566 (fwd) 21.29 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUG: :C:A+A+:G: :AA+C:+U:G+C 165532 AACUGAUGAGCUCUAGAAUGACGUAAACUGUUGAC 165566 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6321,sp|AC122887.2|AC122887 Mus musculus chromosome 10 clone RP23-91L6, complete sequence. ----isReversed: 0 ----hitSequence: GACUGAUGUUUCCCAAAGGAUAAAAUAUAAAUG hit 128 : 166402 166434 (fwd) 20.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUG::UCCCA +AGGA::AAA::+ ::U 166402 GACUGAUGUUUCCCA--AAGGAUAAAAUAUAAAUG 166434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6366,sp|AC123042.2|AC123042 Mus musculus chromosome 10 clone RP24-545O17, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGUCUUUCUUAUAGAAAGAAACUCUCUUC hit 129 : 33596 33630 (fwd) 20.63 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUG: U::C AUA::A :AAA: CU :UC 33596 AACUGAUGUCUUUCUUAUAGAAAGAAACUCUCUUC 33630 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6421,sp|AC123815.3|AC123815 Mus musculus chromosome 9 clone RP24-238O19, complete sequence. ----isReversed: 0 ----hitSequence: AGCUGAAGAGUGAUAGAGGAAGACUAAACACUGGUC hit 130 : 36867 36902 (fwd) 20.72 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA G:GU ::A+A :: AC:A AC CU GUC 36867 AGCUGAAGAGUGAUAGAgGAAGACUAAACACUGGUC 36902 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6598,sp|AC124445.4|AC124445 Mus musculus chromosome 10 clone RP24-191B18, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGAAUUGGAUUGAAUGAACCUGUUGGC hit 131 : 57256 57288 (fwd) 20.16 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAUGA:U:+ A U +:A:GAA:C:+U:G:C 57256 AACUGAUGAAUUGGA--UUGAAUGAACCUGUUGGC 57288 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #6623,sp|AC124485.3|AC124485 Mus musculus chromosome 8 clone RP23-450J12, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUCAACCCUAAAUUAGGGAGGAAGGCCCCUC hit 132 : 3383 3348 (rev) 23.61 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAU:A::CC:AAA U:GG::G:AA GC C UC 194872 AACUGAUCAACCCUAAAuUAGGGAGGAAGGCCCCUC 194907 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7252,sp|AC129211.3|AC129211 Mus musculus chromosome 8 clone RP24-348E18, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUGAGCCCCAGGUUGAGUGAGACCCUUGUC hit 133 : 62716 62682 (rev) 19.93 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA GA : C A+ U G : GA AC CU GUC 104740 AACUGAUGAGCCCCAGGUUGAGUGAGACCCUUGUC 104774 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #7361,sp|AC131711.3|AC131711 Mus musculus chromosome 6 clone RP23-192M18, complete sequence. ----isReversed: 0 ----hitSequence: GCCUGAAAAUUCUGAGAGAAGAAGAAAGUCUUCUC hit 134 : 83667 83701 (fwd) 19.74 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA A:UC::A+A ::GA:G A :CU: UC 83667 GCCUGAAAAUUCUGAGAGAAGAAGAAAGUCUUCUC 83701 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #18965,sp|AF320599.1|AF320599 Mus musculus C lectin-related protein B gene, exons 3, 4, 5, and partial cds. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 135 : 3076 3106 (fwd) 28.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 3076 CACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 3106 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #18966,sp|AF320600.1|AF320600 Mus musculus NKR-P1F (Nkrp1f) gene, exons 2-6, and C lectin-related protein A gene, complete cds. ----isReversed: 0 ----hitSequence: UACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 136 : 23593 23623 (fwd) 27.82 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 23593 UACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 23623 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #18988,sp|AF321553.1|AF321553 Mus musculus osteoclast inhibitory lectin (Ocil) mRNA, complete cds. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 137 : 1002 1032 (fwd) 28.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 1002 CACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 1032 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24091,sp|AL596384.17|AL596384 Mouse DNA sequence from clone RP23-353J21 on chromosome 11 ----isReversed: 0 ----hitSequence: UGCUGAGGAGGCUCAGGAGAGCCGAUCCCUUUAGAC hit 138 : 109712 109747 (fwd) 19.63 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 +CUGA:GAG:C::A+ +::G:CGA::C++U +G:C 109712 UGCUGAGGAGGCUCAGGAGAGCCGAUCCCUUuAGAC 109747 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24130,sp|AL603889.5|AL603889 Mouse DNA sequence from clone RP23-407M20 on chromosome 11 ----isReversed: 0 ----hitSequence: AACUGAUGAGCUGCAAAUUCAAAGAGAAACCCUGUC hit 139 : 11144 11179 (fwd) 23.13 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 AACUGAUGA :: CAAA A :: GAAAC+CU GUC 11144 AACUGAUGAGCUGCAAAuuCAAAGAGAAACCCU-GUC 11179 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #24383,sp|AL627187.13|AL627187 Mouse DNA sequence from clone RP23-319B15 on chromosome 11 ----isReversed: 0 ----hitSequence: GCCUGAAGCGCUCCAAGGAGCUAAACCUGGUG hit 140 : 187939 187970 (fwd) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA G:G::C:A +:G::C:A AC+++ GU 187939 GCCUGAAGCGCUCCA--AGGAGCUAAACCUG-GUG 187970 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26083,sp|AL773539.18|AL773539 Mouse DNA sequence from clone RP23-9F18 on chromosome 4 ----isReversed: 0 ----hitSequence: AGCUGAUGAGCUCCAAAAAGAGCGAAACCUGUUG hit 141 : 161575 161608 (fwd) 33.87 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGAG::CCAAA+AG::CGAAA:+++ :U 161575 AGCUGAUGAGCUCCAAAAAGAGCGAAACCUG-UUG 161608 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26162,sp|AL805958.8|AL805958 Mouse DNA sequence from clone RP23-179F9 on chromosome 2 ----isReversed: 1 ----hitSequence: CACUGAUGUGGUUGCUGGGAACCAAACUCUGGUC hit 142 : 58013 57980 (rev) 19.64 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUG: GU:+: :+:AC:AAAC CU GUC 140615 CACUGAUGUgGUUGCU--GGGAACCAAACUCUGGUC 140648 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26445,sp|AL833771.4|AL833771 Mouse DNA sequence from clone RP23-228H14 on chromosome 2 ----isReversed: 0 ----hitSequence: CACUGAGGAUCUCCUAGAAGAGAGAGACAUUCUUC hit 143 : 64142 64176 (fwd) 22.00 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA:GA:::CC A +AG:::GA:A::+U::UC 64142 CACUGAGGAUCUCCUAGAAGAGAGAGACAUUCUUC 64176 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26447,sp|AL833773.6|AL833773 Mouse DNA sequence from clone RP23-434A2 on chromosome 4 ----isReversed: 1 ----hitSequence: CCCUGAUGAUUGGCAGAUACGAAAAAACACAUUC hit 144 : 73976 73943 (rev) 20.36 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUG :U +CA+AUA+ A: AAA::C ::UC 83156 CCCUGAUGAUUGGCAGAUACGAAAAAACAC-AUUC 83189 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26479,sp|AL833807.5|AL833807 Mouse DNA sequence from clone RP23-305G2 on chromosome 2 ----isReversed: 1 ----hitSequence: AGCUGACCAGUCCAAAAGAGGCCUAAGCAGUUGUC hit 145 : 54593 54559 (rev) 19.66 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA:::G CC+AAA +GG C::::C:+U:G:C 10479 AGCUGACCAGUCCAAAAGAGGCCUAAGCAGUUGUC 10513 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26718,sp|AL845170.5|AL845170 Mouse DNA sequence from clone RP23-282A22 on chromosome 2 ----isReversed: 0 ----hitSequence: UACUUAUUAUGUGUAAAUACACUGUAACUGUUUUC hit 146 : 104594 104628 (fwd) 20.90 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACU AU:A:::+:AAAU:+:::G:AA::+U::UC 104594 UACUUAUUAUGUGUAAAUACACUGUAACUGUUUUC 104628 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27180,sp|AL929113.9|AL929113 Mouse DNA sequence from clone RP23-424D23 on chromosome 2 ----isReversed: 1 ----hitSequence: ACCUGAUGAAUGCCUAAAGGCUGAGAAGCGCCUC hit 147 : 134134 134101 (rev) 20.65 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGA GA ::CC:A +:GG::GA A:GC+C:UC 27054 ACCUGAUGAaUGCCUA--AAGGCUGAGAAGCGCCUC 27087 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #27554,sp|AP001295.1|AP001295 Mus musculus genomic DNA, chromosome 7, clone:B96. ----isReversed: 0 ----hitSequence: AGCUGAGGAGCUGAGGACGACAGUGAGACUCAUGUC hit 148 : 38937 38972 (fwd) 20.11 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA:GA ::++ +A ++:: GA:AC:C :GUC 38937 AGCUGAGGAGCUGAGGAcGACAGUGAGACUCAUGUC 38972 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #30482,sp|AY137338.1|AY137338 Mus musculus osteoclast inhibitory lectin (Ocil) gene, complete cds. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 149 : 8347 8377 (fwd) 28.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 8347 CACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 8377 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #35215,sp|AY320031.1|AY320031 Mus musculus osteoclast inhibitory lectin (Ocil) mRNA, complete cds. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 150 : 1009 1039 (fwd) 28.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 1009 CACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 1039 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #49015,sp|BC051091.1|BC051091 Mus musculus, Similar to C lectin-related protein A, clone MGC:59011 IMAGE:6529908, mRNA, complete cds. ----isReversed: 0 ----hitSequence: UACUGAUGAGUCCCAAAAAGGACGAAAUAAC hit 151 : 1477 1507 (fwd) 27.82 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUGAGUCCCAAA+AGGACGAA+: :+C 1477 UACUGAUGAGUCCCAAAAAGGACGAAAU----AAC 1507 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #72428,sp|AJ271885.2|MMU271885 Mus musculus partial Kcnq1 gene for potassium channel protein and associated 187740 bp genomic fragment ----isReversed: 0 ----hitSequence: AGCUGAGGAGCUGAGGACGACAGUGAGACUCAUGUC hit 152 : 77496 77531 (fwd) 20.11 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA:GA ::++ +A ++:: GA:AC:C :GUC 77496 AGCUGAGGAGCUGAGGAcGACAGUGAGACUCAUGUC 77531 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/phg.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #2033,sp|AB020754.1|AB020754 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYN8. ----isReversed: 1 ----hitSequence: UGCUCGAGUUCCUAACAGAACGAAACACUUGU hit 153 : 30040 30009 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU :GAGU:CC AA AG:ACGA:AC:CU:GU 24489 UGCU--CGAGUUCCUAACAGAACGAAACACUUGU- 24520 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #8956,sp|AC008075.2|AC008075 Arabidopsis thaliana chromosome 1 BAC F24J5 sequence, complete sequence. ----isReversed: 0 ----hitSequence: UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUUAUC hit 154 : 21705 21738 (fwd) 22.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA GA:UCC: AAU:GGA:GA A:++U :UC 21705 UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUU-AUC 21738 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9038,sp|AC011914.9|AC011914 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence. ----isReversed: 0 ----hitSequence: UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUUAUC hit 155 : 89969 90002 (fwd) 22.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA GA:UCC: AAU:GGA:GA A:++U :UC 89969 UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUU-AUC 90002 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #9059,sp|AC012563.7|AC012563 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence. ----isReversed: 1 ----hitSequence: AGCUGAAGAGAUCCAAAAGAGGUUGAUACACUUUUC hit 156 : 72072 72037 (rev) 22.23 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGA GA ::CCAAA AG:: GA A::CU::UC 29895 AGCUGAAGAGAUCCAAAaGAGGUUGAUACACUUUUC 29930 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #29960,sp|AF213936.1|AF213936 Prunus dulcis amino acid/peptide transporter (PTR2) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AACUGAUCAGCCCCAAAGGAUGAAACACAUGGC hit 157 : 563 531 (rev) 19.78 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:A CCCA +AGG G:A C:C :G C 1427 AACUGAUCAGCCCCA--AAGGAUGAAACACAUGGC 1459 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #45789,sp|AF360155.1|AF360155 Arabidopsis thaliana putative peptide transport protein (At3g54140) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AACUGAUCAGCUCCAAAGGACGAAACACACGGC hit 158 : 632 600 (rev) 20.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:AG :CCA +AG: CG:A C:C :G C 1407 AACUGAUCAGCUCCA--AAGGACGAAACACACGGC 1439 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #97157,sp|AK117889.1|AK117889 Arabidopsis thaliana At1g68720 mRNA for putative deaminase, complete cds, clone: RAFL19-06-N12. ----isReversed: 1 ----hitSequence: UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUUAUC hit 159 : 3103 3070 (rev) 22.83 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGA GA:UCC: AAU:GGA:GA A:++U :UC 1122 UUCUGAAGAUUCCUUAAUAGGAGGAGAUCUU-AUC 1155 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #99224,sp|AP003266.3|AP003266 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09. ----isReversed: 0 ----hitSequence: CACUGAAGAUUCAGGAAUCAGAGGAAACUGUUGUC hit 160 : 89097 89131 (fwd) 22.79 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +ACUGA GA:UC: AAU :GA:GA AC:+U:GUC 89097 CACUGAAGAUUCAGGAAUCAGAGGAAACUGUUGUC 89131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #99291,sp|AP003350.3|AP003350 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08. ----isReversed: 0 ----hitSequence: AGCUGAAAAGGCCCAAUUGGGCCGACAAGUCUUC hit 161 : 40695 40728 (fwd) 20.01 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGA AG:CC:AA U:GG:CG A:G+ C:UC 40695 AGCUGAAAAGGCCCAAUUGGGCCGACAAGU-CUUC 40728 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #99417,sp|AP003817.2|AP003817 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1167_G06. ----isReversed: 0 ----hitSequence: CAUUGAUGAGGCCCAUAGGCCGAAAAAUUUC hit 162 : 6932 6962 (fwd) 23.01 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +A UGAUGAG:CCCA UAGG:CGAAA:: ::UC 6932 CAUUGAUGAGGCCCA--UAGGCCGAAAAA--UUUC 6962 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #100158,sp|AP006113.1|AP006113 Lotus corniculatus var. japonicus genomic DNA, chromosome 4, clone:LjT45A24, TM0197. ----isReversed: 0 ----hitSequence: AGCUGAUGACUUCAAUUGAAAGAAACAUCUUUC hit 163 : 95322 95354 (fwd) 21.51 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGA U:C A U G:A GAAA::+ ::UC 95322 AGCUGAUGACUUCAA--UUGAAAGAAACAUCUUUC 95354 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101930,sp|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73 ----isReversed: 1 ----hitSequence: ACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC hit 164 : 178598 178566 (rev) 30.47 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ U+G::CGAAAC+ +GUC 16265 ACCUGAUGAGCUCAAGGUAGAGCGAAACC--AGUC 16297 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #101930,sp|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73 ----isReversed: 1 ----hitSequence: ACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC hit 165 : 173585 173553 (rev) 27.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ +G::CGAAAC+ +GUC 21278 ACCUGAUGAGCUCAAGGCAGAGCGAAACC--AGUC 21310 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102252,sp|AL132957.1|ATF24B22 Arabidopsis thaliana DNA chromosome 3, BAC clone F24B22 ----isReversed: 0 ----hitSequence: AACUGAUCAGCUCCAAAGGACGAAACACACGGC hit 166 : 32277 32309 (fwd) 20.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:AG :CCA +AG: CG:A C:C :G C 32277 AACUGAUCAGCUCCA--AAGGACGAAACACACGGC 32309 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102300,sp|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project) ----isReversed: 0 ----hitSequence: ACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC hit 167 : 89235 89267 (fwd) 30.47 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ U+G::CGAAAC+ +GUC 89235 ACCUGAUGAGCUCAAGGUAGAGCGAAACC--AGUC 89267 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #102300,sp|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project) ----isReversed: 0 ----hitSequence: ACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC hit 168 : 94248 94280 (fwd) 27.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ +G::CGAAAC+ +GUC 94248 ACCUGAUGAGCUCAAGGCAGAGCGAAACC--AGUC 94280 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119282,sp|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21 ----isReversed: 1 ----hitSequence: ACCUGAUGAGCUCAAGGUAGAGCGAAACCAGUC hit 169 : 77483 77451 (rev) 30.47 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ U+G::CGAAAC+ +GUC 378 ACCUGAUGAGCUCAAGGUAGAGCGAAACC--AGUC 410 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #119282,sp|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21 ----isReversed: 1 ----hitSequence: ACCUGAUGAGCUCAAGGCAGAGCGAAACCAGUC hit 170 : 72470 72438 (rev) 27.84 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGAG::C+A+ +G::CGAAAC+ +GUC 5391 ACCUGAUGAGCUCAAGGCAGAGCGAAACC--AGUC 5423 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #130449,sp|AY039937.1|AY039937 Arabidopsis thaliana At3g13490 mRNA sequence. ----isReversed: 0 ----hitSequence: GGCUGAUGUGUUCCGGAGAAGGGCAAAAAUCGUUUC hit 171 : 767 802 (fwd) 19.53 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGAUG:G :CC +A +AG: C:AAA::C+::UC 767 GGCUGAUGUGUUCCGGAgAAGGGCAAAAAUCGUUUC 802 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #140699,sp|AY084773.1|AY084773 Arabidopsis thaliana clone 117581 mRNA, complete sequence. ----isReversed: 1 ----hitSequence: AACUGAUCAGCUCCAAAGGACGAAACACACGGC hit 172 : 621 589 (rev) 20.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:AG :CCA +AG: CG:A C:C :G C 1428 AACUGAUCAGCUCCA--AAGGACGAAACACACGGC 1460 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #145134,sp|AY089208.1|AY089208 Arabidopsis thaliana clone 95459 mRNA, complete sequence. ----isReversed: 1 ----hitSequence: UGCUCGAGUUCCUAACAGAACGAAACACUUGU hit 173 : 169 138 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU :GAGU:CC AA AG:ACGA:AC:CU:GU 1990 UGCU--CGAGUUCCUAACAGAACGAAACACUUGU- 2021 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #149368,sp|AY113884.1|AY113884 Arabidopsis thaliana putative peptide transport protein (At3g54140) mRNA, complete cds. ----isReversed: 1 ----hitSequence: AACUGAUCAGCUCCAAAGGACGAAACACACGGC hit 174 : 503 471 (rev) 20.69 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU:AG :CCA +AG: CG:A C:C :G C 1242 AACUGAUCAGCUCCA--AAGGACGAAACACACGGC 1274 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #157074,sp|AY181573.1|AY181573 Pachycereus gaumeri isolate sa1360 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence. ----isReversed: 0 ----hitSequence: CCCUGACGUGUGCUGGAAGCACAAAACGUUGCGAC hit 175 : 581 615 (fwd) 20.03 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 + CUGA:G:GU+C: + +:G+AC:A:+CG+U CG+C 581 CCCUGACGUGUGCUGG-AAGCACAAAACGUUgCGAC 615 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #173665,sp|BT002001.1|BT002001 Arabidopsis thaliana putative protein (At5g53450) mRNA, complete cds. ----isReversed: 1 ----hitSequence: UGCUCGAGUUCCUAACAGAACGAAACACUUGU hit 176 : 259 228 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU :GAGU:CC AA AG:ACGA:AC:CU:GU 2005 UGCU--CGAGUUCCUAACAGAACGAAACACUUGU- 2036 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #173981,sp|BT002317.1|BT002317 Arabidopsis thaliana clone C105095 putative lysyl-tRNA synthetase (At3g13490) mRNA, complete cds. ----isReversed: 0 ----hitSequence: GGCUGAUGUGUUCCGGAGAAGGGCAAAAAUCGUUUC hit 177 : 744 779 (fwd) 19.53 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 +CUGAUG:G :CC +A +AG: C:AAA::C+::UC 744 GGCUGAUGUGUUCCGGAgAAGGGCAAAAAUCGUUUC 779 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #177789,sp|BT008410.1|BT008410 Arabidopsis thaliana At5g53450 gene, complete cds. ----isReversed: 1 ----hitSequence: UGCUCGAGUUCCUAACAGAACGAAACACUUGU hit 178 : 76 45 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CU :GAGU:CC AA AG:ACGA:AC:CU:GU 1938 UGCU--CGAGUUCCUAACAGAACGAAACACUUGU- 1969 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #179539,sp|X97188.1|CACCEL1 C.annuum mRNA for endo-beta-1,4-glucanase, ccel1 ----isReversed: 0 ----hitSequence: UACUGACGAUCCUCGAAUUACGGAGAAAUUUAUAUC hit 179 : 151 186 (fwd) 22.17 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 ACUGA:GA::C:C AA UA:G::GA:A::+ ::UC 151 UACUGACGAUCCUCGAAuUACGGAGAAAUUUAUAUC 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #180221,sp|X87323.1|CARNACEL1 C.annuum mRNA beta-1,4-endoglycanohydrolase ----isReversed: 0 ----hitSequence: UACUGACGAUCCUCGAAUUACGGAGAAAUUUAUAUC hit 180 : 262 297 (fwd) 22.17 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 ACUGA:GA::C:C AA UA:G::GA:A::+ ::UC 262 UACUGACGAUCCUCGAAuUACGGAGAAAUUUAUAUC 297 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184320,sp|AJ295008.1|DCA295008 Dianthus caryophyllus viroidlike RNA, cultivar Praline, isolate C1 ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 181 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184321,sp|AJ295009.1|DCA295009 Dianthus caryophyllus viroidlike RNA, cultivar Praline, C2 isolate ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 182 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184322,sp|AJ295010.1|DCA295010 Dianthus caryophyllus viroidlike RNA, cultivar Newton ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 183 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184323,sp|AJ295011.1|DCA295011 Dianthus caryophyllus viroidlike RNA, cultivar Tanga ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 184 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184324,sp|AJ295012.1|DCA295012 Dianthus caryophyllus viroidlike DNA, cultivar Tanga ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 185 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184325,sp|AJ295013.1|DCA295013 Dianthus caryophyllus viroidlike DNA, cultivar Praline ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 186 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184326,sp|AJ295014.1|DCA295014 Dianthus caryophyllus viroidlike DNA, cultivar Praline deleted ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 187 : 166 196 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 166 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 196 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184327,sp|AJ295015.1|DCA295015 Dianthus caryophyllus viroidlike DNA, cultivar White Castellaro, isolate K ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 188 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184328,sp|AJ295016.1|DCA295016 Dianthus caryophyllus viroidlike DNA, cultivar White Castellaro, isolate L ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 189 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184329,sp|AJ295017.1|DCA295017 Dianthus caryophyllus viroidlike DNA, cultivar Domingo, isolate M ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 190 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184330,sp|AJ295018.1|DCA295018 Dianthus caryophyllus viroidlike DNA, cultivar Domingo, isolate N ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 191 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184331,sp|AJ295019.1|DCA295019 Dianthus caryophyllus viroidlike DNA, cultivar 1285 hybrid ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 192 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pln.dat.fasta.gz ----sequence: #184535,sp|X68034.1|DCVLRNA D.caryophylus viroidlike RNA ----isReversed: 0 ----hitSequence: GCCUGAUGAGCCCGUAAGGGCGAAACCGGUC hit 193 : 245 275 (fwd) 29.32 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 CUGAUGAG:CC: +:GG:CGAAAC++ GUC 245 GCCUGAUGAGCCCGU--AAGGGCGAAACCG--GUC 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #3981,sp|AB024946.1|AB024946 Escherichia coli plasmid pB171 DNA, complete sequence. ----isReversed: 0 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 194 : 50499 50537 (fwd) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 50499 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 50537 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #16792,sp|AE000561.1|AE000561 Helicobacter pylori 26695 section 39 of 134 of the complete genome. ----isReversed: 1 ----hitSequence: GACUGAUGAUUACUUGAAAGAAUUAAACCGAUUC hit 195 : 9627 9594 (rev) 21.76 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUG::U C: +A+:G A::AAA:++ :UC 9003 GACUGAUGAUUACUUGAAAGAAUUAAACCGA-UUC 9036 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #17974,sp|AE001878.1|AE001878 Deinococcus radiodurans R1 section 15 of 229 of the complete chromosome 1. ----isReversed: 1 ----hitSequence: AACCGAUGAGGCGAAAGUCGCCGAAACGGGUCGGC hit 196 : 2705 2671 (rev) 21.38 bits ::::::<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 AAC GAUGAG:C+ AA +G:CGAA CG++ CG C 9971 AACCGAUGAGGCGAAA-GUCGCCGAAACGGGuCGGC 10005 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #22784,sp|AE008044.1|AE008044 Agrobacterium tumefaciens str. C58 circular chromosome, section 102 of 254 of the complete sequence. ----isReversed: 0 ----hitSequence: CGCUGAUGAGGCCGAUGGUGCUGGCCGAAAAGCCCUC hit 197 : 7006 7042 (fwd) 19.64 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 ++CUGAUGAG:CC A GG:CGAAA:GC C:UC 7006 CGCUGAUGAGGCCGAUGgugCUGGCCGAAAAGC-CCUC 7042 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #23799,sp|AE009078.1|AE009078 Agrobacterium tumefaciens strain C58 circular chromosome, section 104 of 256 of the complete sequence. ----isReversed: 0 ----hitSequence: CGCUGAUGAGGCCGAUGGUGCUGGCCGAAAAGCCCUC hit 198 : 6660 6696 (fwd) 19.64 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 ++CUGAUGAG:CC A GG:CGAAA:GC C:UC 6660 CGCUGAUGAGGCCGAUGgugCUGGCCGAAAAGC-CCUC 6696 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #28192,sp|AE013707.1|AE013707 Yersinia pestis KIM section 107 of 415 of the complete genome. ----isReversed: 1 ----hitSequence: CCCUGAUGUGGCUUGAUAAAGCCGAAACCUGGGC hit 199 : 1614 1581 (rev) 20.96 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUG:G:C:: A +::G:C:AA C+++ G C 9130 CCCUGAUGUGGCUUGAUAAAGCCGAAACCUG-GGC 9163 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #29655,sp|AE015311.1|AE015311 Shigella flexneri 2a str. 301 section 274 of 412 of the complete genome. ----isReversed: 1 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 200 : 911 873 (rev) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 9726 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 9764 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30406,sp|AE016937.1|AE016937 Bacteroides thetaiotaomicron VPI-5482, section 12 of 21 of the complete genome. ----isReversed: 1 ----hitSequence: AGCUGAUGAUUACCCAGAAUAGGGUGAAACAGAUGU hit 201 : 215762 215727 (rev) 20.82 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 A+CUGAUGA : CCCA+A UAGG :GAAAC:+ :GU 90200 AGCUGAUGAuUACCCAGAaUAGGGUGAAACAGAUGU- 90235 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30408,sp|AE016939.1|AE016939 Bacteroides thetaiotaomicron VPI-5482, section 14 of 21 of the complete genome. ----isReversed: 1 ----hitSequence: AUCUGAUGACCUUGCAGGAAGAAGGAAAUCCGAUC hit 202 : 221732 221698 (rev) 20.36 bits ::::::<<<.<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAAuaGgaCGAaACgcucGUC 35 A CUGAUGA U:+CA+ +A+:A GAAA:+C+ :UC 85649 AUCUGAUGAcCUUGCAGGAAGAAGGAAAUCCG-AUC 85683 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30448,sp|AE016988.1|AE016988 Shigella flexneri 2a str. 2457T section 11 of 16 of the complete genome. ----isReversed: 1 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 203 : 151038 151000 (rev) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 141869 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 141907 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30454,sp|AE016994.1|AE016994 Chlamydophila caviae GPIC section 1 of 4 of the complete genome. ----isReversed: 0 ----hitSequence: AACUGAUGAGGUGGAAAGACUCCGCAAUCGUCAGC hit 204 : 164739 164773 (fwd) 19.97 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU AG: +:AAA :+ :CG A ::+U:: C 164739 AACUGAUGAGGUGGAAAGACUCCGCAAUCGUCAGC 164773 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30470,sp|AE017010.1|AE017010 Bacillus cereus ATCC 14579 section 13 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AGCUGAUGAAGCUGCGAUAAACCGAAACGUUCUGC hit 205 : 202824 202858 (fwd) 20.30 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGA:: :: +AU:: ::GAA :G+UC: C 202824 AGCUGAUGAAGCUGCGAUAAACCGAAACGUUCUGC 202858 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30488,sp|AE017036.1|AE017036 Bacillus anthracis str. Ames section 13 of 18 of the complete genome. ----isReversed: 0 ----hitSequence: AGCUGAUGAAGCUGCGAUAAACCGAAACGCUCUGC hit 206 : 161181 161215 (fwd) 20.81 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 A+CUGAUGA:: :: +AU:: ::GAA :GCUC: C 161181 AGCUGAUGAAGCUGCGAUAAACCGAAACGCUCUGC 161215 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #30500,sp|AE017151.1|AE017151 Haemophilus ducreyi strain 35000HP section 1 of 6 of the complete genome. ----isReversed: 0 ----hitSequence: CGCCGAUGAGUACAAAAACUACGAAACCCGCGUG hit 207 : 95355 95388 (fwd) 21.95 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++C GAUGAGU: +AA ++ :ACGAAAC:C+:GU 95355 CGCCGAUGAGUACAAA-AACUACGAAACCCGCGUG 95388 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #41174,sp|AF107019.1|AF107019 Actinomyces naeslundii strain P-1-K type-1 fimbrial major subunit precursor (fimP) gene, complete cds. ----isReversed: 0 ----hitSequence: GGCUGAGAAGGCCGAGAAGAAGGCCGCGACCGAGGUC hit 208 : 1433 1469 (fwd) 20.48 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +CUGA: AG:CC:A+A +:GG:CG :AC + GUC 1433 GGCUGAGAAGGCCGAGAagAAGGCCGCGACCGAGGUC 1469 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz ----sequence: #42603,sp|AF121767.1|AF121767 Bacillus subtilis strain 5D5 recombinant surfactin/lichenysin A synthetase (srfAB-lchAB) gene, partial cds. ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 209 : 4547 4515 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 372 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 404 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz ----sequence: #1147,sp|AF200692.2|AF200692 Shigella flexneri 2a she pathogenicity island, complete sequence. ----isReversed: 1 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 210 : 21351 21313 (rev) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 29984 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 30022 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #343,sp|AJ414155.1|AJ414155 Yersinia pestis strain CO92 complete genome; segment 15/20 ----isReversed: 0 ----hitSequence: CCCUGAUGUGGCUUGAUAAAGCCGAAACCUGGGC hit 211 : 137203 137236 (fwd) 20.96 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUG:G:C:: A +::G:C:AA C+++ G C 137203 CCCUGAUGUGGCUUGAUAAAGCCGAAACCUG-GGC 137236 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1100,sp|AP005042.1|AP005042 Streptomyces avermitilis genomic DNA, complete genome, section 22/30. ----isReversed: 1 ----hitSequence: GACCGACGAGGAGCAGAAGCUCCGCAACGAGUC hit 212 : 243865 243833 (rev) 20.67 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AC GA: AG::+:A+A+:+::CG :AC: :GUC 56061 GACCGACGAGGAGCAGAAGCUCCGCAACG--AGUC 56093 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1155,sp|AP005283.1|AP005283 Corynebacterium glutamicum ATCC 13032 DNA, complete genome, section 10/10. ----isReversed: 1 ----hitSequence: UGCCGAUGAUGUCGAAGAGAAGGACGGAAAGUUCUUC hit 213 : 236791 236755 (rev) 19.68 bits ::::::<<<.<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGA.GucCcAAA.uaGgaCGAaACgcucGUC 35 +C GAU A GUC++A+A +++GACG AA:G+UC:UC 88861 UGCCGAUGAuGUCGAAGAgAAGGACGGAAAGUUCUUC 88897 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #1165,sp|AP005645.1|AP005645 Streptomyces avermitilis plasmid SAP1 DNA, complete genome. ----isReversed: 1 ----hitSequence: UGCUGACCAGGCGCGUAUGCGCCGAGACCUGCGGC hit 214 : 63876 63842 (rev) 20.57 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 +CUGA::AG:C+: AU:+G:CG:: C:++:G C 30412 UGCUGACCAGGCGCGUAUGCGCCGAGACCUGCGGC 30446 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #2695,sp|X04833.1|ATPRIREP A. rhizogenes plasmid pRiA4b replicator region (hairy-root-inducing plasmid) ----isReversed: 0 ----hitSequence: CGCUGAUGAACCGCAAAGAGGGCGACACGCUCUU hit 215 : 994 1027 (fwd) 22.17 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA GA::C+CAAA A+G::GA A:GCUC:U 994 CGCUGAUGAACCGCAAAGAGGGCGACACGCUCUU- 1027 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #4936,sp|AY026066.1|AY026066 Agrobacterium tumefaciens putative transport protein Mep (mep), RNase D (rnd), hypothetical protein, and adenylate cyclase-like protein (cya2) genes, complete cds; and unknown gene. ----isReversed: 1 ----hitSequence: CGCUGAUGAGGCCGAUGGUGCUGGCCGAAAAGCCCUC hit 216 : 806 770 (rev) 19.64 bits ::::::<<<<<<<<___..._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA...uaGgaCGAaACgcucGUC 35 ++CUGAUGAG:CC A GG:CGAAA:GC C:UC 4516 CGCUGAUGAGGCCGAUGgugCUGGCCGAAAAGC-CCUC 4552 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #8010,sp|AY055428.1|AY055428 Vibrio cholerae STX transposon-like element and pilus assembly region, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUUGAGUUUGAAAUACAACGAGACGCGGCGU hit 217 : 74399 74434 (fwd) 19.78 bits ::::::.<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGA.uGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 AACUGA GAGU:::AAAU:::ACGA ACGC+ CGU 74399 AACUGAuUGAGUUUGAAAUACAACGAGACGCGgCGU- 74434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #9452,sp|AY090559.1|AY090559 Providencia rettgeri conjugative genomic island R391, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUUGAGUUUGAAAUACAACGAGACGCGGCGU hit 218 : 64099 64134 (fwd) 19.78 bits ::::::.<<<<<<<<____>>>>>>>><<<__.>>>: 1 aaCUGA.uGAGucCcAAAuaGgaCGAaACgcu.cGUC 35 AACUGA GAGU:::AAAU:::ACGA ACGC+ CGU 64099 AACUGAuUGAGUUUGAAAUACAACGAGACGCGgCGU- 64134 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #40095,sp|D50453.1|BSD453 Bacillus subtilis DNA for 25-36 degree region containing the amyE-srfA region, complete cds. ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 219 : 74350 74318 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 71842 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 71874 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #40659,sp|AJ292964.4|BSP292964 Bacillus sphaericus partial gene for S-layer protein precursor, strain NCTC9602 ----isReversed: 1 ----hitSequence: AACUGAUGAUGUCUAAAAAGAAAGGAACAAGUC hit 220 : 74 42 (rev) 20.60 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGAU A: :C:AAA+:G: :G AAC: :GUC 2933 AACUGAUGAUGUCUAAAAAGAAAGGAACA--AGUC 2965 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42131,sp|D13262.1|BSSRFAB Bacillus subtilis srfAA and srfAB genes for surfactin synthetase, complete and partial cds. ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 221 : 18685 18653 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 1851 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 1883 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42132,sp|X72672.1|BSSRFAD B.subtilis ORF1, ORF2 and ORF3 for surfactin synthetases ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 222 : 8406 8374 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 5358 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 5390 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42133,sp|X70356.1|BSSRFAP B.subtilis srfA-sfp gene region for surfactin synthetase ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 223 : 18161 18129 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 14642 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 14674 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42382,sp|Z99105.2|BSUB0002 Bacillus subtilis complete genome (section 2 of 21): from 213031 to 415798. ----isReversed: 1 ----hitSequence: CCCUGAUGAGCCUCAUAAGGUGAAAUGCUCAGA hit 224 : 181655 181623 (rev) 21.28 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 + CUGAUGA :C:CA UA:G: GAA :GCUC: 21114 CCCUGAUGAGCCUCA--UAAGGUGAAAUGCUCAGA 21146 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #42989,sp|BX294143.1|BX294143 Pirellula sp. strain 1 complete genome; segment 11/24 ----isReversed: 0 ----hitSequence: AACUGACGUUUCCCAGGAACGAUCACACGUUCUUC hit 225 : 62532 62566 (fwd) 20.13 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AACUGA G::UC CA+ +A GA::A A:G+UC:UC 62532 AACUGACGUUUCCCAGGAACGAUCACACGUUCUUC 62566 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #43033,sp|BX640412.1|BX640412 Bordetella pertussis strain Tohama I, complete genome; segment 2/12 ----isReversed: 1 ----hitSequence: GACUGAUGAGCGCGUCGAUGGCGAAACCCUCGUC hit 226 : 233810 233777 (rev) 19.80 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUGAUGAG: : : :CGAAAC:CU:GUC 114362 GACUGAUGAGCGCGUC-GAUGGCGAAACCCUCGUC 114395 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz ----sequence: #46690,sp|D37918.1|D37918 Escherichia coli DNA for Reverse transcriptase like protein, complete cds. ----isReversed: 0 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 227 : 1265 1303 (fwd) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 1265 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 1303 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #1754,sp|AJ494981.1|ECO494981 Escherichia coli pathogenicity island II, strain 536 ----isReversed: 1 ----hitSequence: GACUGUAUGAGCUUCUUGGAGCGAAACCGGGUC hit 228 : 52522 52490 (rev) 20.43 bits :::::.:<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUG.AuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ACUG AUGAG:::: U::::CGAAAC+++ GUC 49810 GACUGuAUGAGCUUCU--UGGAGCGAAACCGG-GUC 49842 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #26728,sp|U29446.1|SA29446 Streptomyces akiyoshiensis aspartate-semialdehyde dehydrogenase (asd) gene, complete cds. ----isReversed: 0 ----hitSequence: GACCGACGAGGAGCAGAAGCUCCGCAACGAGUC hit 229 : 1829 1861 (fwd) 20.67 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 AC GA: AG::+:A+A+:+::CG :AC: :GUC 1829 GACCGACGAGGAGCAGAAGCUCCGCAACG--AGUC 1861 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #36322,sp|Y08956.1|TRY08956 T.rossianum 16S rRNA gene (strain NR-27T) ----isReversed: 0 ----hitSequence: CGCUGAGGAGCCGUUUAGGGCGAAACCGAUGAC hit 230 : 1403 1435 (fwd) 21.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GAG:C+: U:+G:CGA:+C + G+C 1403 CGCUGAGGAGCCGUU--UAGGGCGAAACCGAUGAC 1435 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #36323,sp|Y08957.1|TRY08957 T.rossianum 16S rRNA gene (strain SC-1) ----isReversed: 0 ----hitSequence: CGCUGAGGAGCCGUUUAGGGCGAAACCGAUGAC hit 231 : 1403 1435 (fwd) 21.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GAG:C+: U:+G:CGA:+C + G+C 1403 CGCUGAGGAGCCGUU--UAGGGCGAAACCGAUGAC 1435 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #36324,sp|Y08958.1|TRY08958 T.rossianum 16S rRNA gene (strain AG3-1) ----isReversed: 0 ----hitSequence: CGCUGAGGAGCCGUUUAGGGCGAAACCGAUGAC hit 232 : 1403 1435 (fwd) 21.15 bits ::::::<<<<<<<<____>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAAuaGgaCGAaACgcucGUC 35 ++CUGA:GAG:C+: U:+G:CGA:+C + G+C 1403 CGCUGAGGAGCCGUU--UAGGGCGAAACCGAUGAC 1435 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz ----sequence: #38102,sp|U97489.1|U97489 Shigella flexneri SBA1336 reverse transcriptase-like protein (sfiA) gene, complete cds. ----isReversed: 1 ----hitSequence: CCCUGAUGAGGUGGUGGUGUAAAUCACCGAAACCGGGUC hit 233 : 842 804 (rev) 20.53 bits ::::::<<<<<<<<___....._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.....uaGgaCGAaACgcucGUC 35 + CUGAUGAG::+ + + +::CGAAAC+++ GUC 2768 CCCUGAUGAGGUGGUGGuguaaAUCACCGAAACCGG-GUC 2806 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/pro05.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/rod.dat.fasta.gz ----sequence: #1384,sp|AC087112.2|AC087112 Rattus norvegicus clone RP31-162L19 strain Brown Norway, complete sequence. ----isReversed: 0 ----hitSequence: AACUGAUGAGUUUGAAGGAAGGACUAAAGACUUUUC hit 234 : 48267 48302 (fwd) 20.68 bits ::::::<<<<<<<<___._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA.uaGgaCGAaACgcucGUC 35 AACUGAUG:GU:::AA +:::AC:AAA :CU: UC 48267 AACUGAUGAGUUUGAAGgAAGGACUAAAGACUUUUC 48302 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40211,sp|AF170496.1|AF170496 Peach latent mosaic viroid variant #24 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 235 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40211,sp|AF170496.1|AF170496 Peach latent mosaic viroid variant #24 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 236 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40212,sp|AF170497.1|AF170497 Peach latent mosaic viroid variant #29 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 237 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40212,sp|AF170497.1|AF170497 Peach latent mosaic viroid variant #29 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 238 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40213,sp|AF170498.1|AF170498 Peach latent mosaic viroid variant #21 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUCUC hit 239 : 302 338 (fwd) 32.76 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :CU: UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCUUCUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40213,sp|AF170498.1|AF170498 Peach latent mosaic viroid variant #21 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUGGA hit 240 : 37 1 (rev) 25.29 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA C:+ :G 303 CACUGAUGAGCCGUUGAgaUACGGCGAAACUUAUGGA 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40214,sp|AF170499.1|AF170499 Peach latent mosaic viroid variant #22 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 241 : 303 339 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 303 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40214,sp|AF170499.1|AF170499 Peach latent mosaic viroid variant #22 from Prunus persica Siberian C cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 242 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 303 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40215,sp|AF170500.1|AF170500 Peach latent mosaic viroid variant #1 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 243 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40215,sp|AF170500.1|AF170500 Peach latent mosaic viroid variant #1 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 244 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40216,sp|AF170501.1|AF170501 Peach latent mosaic viroid variant #6 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 245 : 301 337 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 301 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40216,sp|AF170501.1|AF170501 Peach latent mosaic viroid variant #6 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 246 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 301 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40217,sp|AF170502.1|AF170502 Peach latent mosaic viroid variant #7 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUAUC hit 247 : 302 338 (fwd) 30.59 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAGUC:: +A U::GACGAAA :C : UC 302 CACUGAUGAGUCUCUGAaaUGAGACGAAACUCAUAUC 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40217,sp|AF170502.1|AF170502 Peach latent mosaic viroid variant #7 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUGA hit 248 : 37 2 (rev) 26.73 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGAUGAG:C+: +A U:+G:CGAA+C:+U:G+ 302 CACUGAUGAGCCGCUGAaaUGCGGCGAAACUUUUGA- 337 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40218,sp|AF170503.1|AF170503 Peach latent mosaic viroid variant #8 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 0 ----hitSequence: CACUGACGAGUUCCUGAAAUGGAACGAAACCUUUU hit 249 : 299 333 (fwd) 27.49 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAGU:C: +A U:G:ACGA:A:++U :U 299 CACUGACGAGUUCCUGAaaUGGAACGAAACCUU-UU- 333 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz ----sequence: #40218,sp|AF170503.1|AF170503 Peach latent mosaic viroid variant #8 from Prunus persica Hardired cultivar, complete sequence. ----isReversed: 1 ----hitSequence: CACUGACGAGUCGCUGGGAUACGGCGAAACUUAUGGG hit 250 : 37 1 (rev) 22.12 bits ::::::<<<<<<<<___.._>>>>>>>><<<__>>>: 1 aaCUGAuGAGucCcAAA..uaGgaCGAaACgcucGUC 35 +ACUGA:GAG C+C + UA+G CGA: C:+ :G 300 CACUGACGAGUCGCUGGgaUACGGCGAAACUUAUGGG 336 ----endhit