params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,0,8892893,8893127,24.31,AUUAAUAUAUAUUUAAUUUAAAUAUAUAUUAAAAUAUAUAUAUUUAAUUUAAAUAUAUAUAUUUAAUUUAAAUAUAUAUUUAAAUUAAAUAUAUAUAUUUAAUUUAAAUAUAUAUUUAAUUUAAAUACAUAUUAAAAUAUAUAUAUUUAAUUUAAAUACAUAUUAAAAUAUAUAUUUAAUUUAAAUAUAUAUUUUAAAAAUAUAUAAAUUAUAUAUUCAAAAUAUAUAUUUAAUU,****    NEW  HIT  #0  ****,,2,0,chr1/8892893-8893127
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,1,16261038,16261109,21.55,GGUUCCAUGAUGUAAUGGCGAGCGCUUUGGACUCUGAGUACGGUGAUCAGCGUUCAAGUCUCAGUGGGACCU,****    NEW  HIT  #1  ****,,2,0,chr1/16261038-16261109
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,2,16433142,16433214,30.80,GUUUCUGUAGUAUAGUGGUUAUCAUGUUUGCCUCACAUGUGAAAGACCCUUGGCUCGAGACUGGAGGGAAACA,chr1/16433142-16433214,,0,0,chr1/16433142-16433214
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,3,16434861,16434931,63.04,GCCUUGGUGGUGCAGUGGUAGAAUUCUCGCCUCCCACGUGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA,chr1/16434861-16434931,,0,0,chr1/16434861-16434931
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,4,16567774,16567846,41.93,GUUUCUGUGGUGUAGUGGUUAUUAUGUUCGCUUCACAUAUGAAAGGUCUCUGGUUCGAGACUGCGUGGGAACA,chr1/16567774-16567846 chr1/16255313-16255241,,0,0,chr1/16567774-16567846
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,5,16569497,16569567,78.29,GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA,chr1/16569497-16569567 chr1/16253585-16253515,,0,0,chr1/16569497-16569567
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,6,16580159,16580230,75.94,UCCCUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCGCGGCCCGGGUUCGAUUCCCGGCCAGGGAA,chr1/16580159-16580230,,0,0,chr1/16580159-16580230
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,7,16583039,16583112,56.33,GUCUCUGUGGUGCAAUCGGUUAGCGCGUUCGGCUGUUAACCAUAAGGUUGGUGGUUAGAGACCACCCAGGGACG,chr1/16583039-16583112,,0,0,chr1/16583039-16583112
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,8,16597253,16597326,80.33,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGAUUGGUGGUUCGAGCCCACCCAGGGACG,chr1/16597253-16597326,,0,0,chr1/16597253-16597326
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,9,39383489,39383561,46.87,ACCAGCAUGUCUCAGUCGGUAUAGUGUGAGACUCUUAAUCUCAGGGUCGUGGGUUCAAGCCCCACAUUGGGCG,chr1/39383489-39383561,,0,0,chr1/39383489-39383561
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,10,55209029,55209097,20.82,GAGAAAGUCAUCGUAGUUACGAAGUUGGCUUAAACCCAGUUUUGGGAGGUUCAAUUCCUUCCUUUCUCU,****    NEW  HIT  #2  ****,,2,0,chr1/55209029-55209097
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,11,93784930,93785014,71.15,GGCUCCGUGGCGCAAUGGAUAGCGCAUUGGACUUCUAGAGGCUGAAGGCAUUCAAAGGUUCCGGGUUCGAGUCCCGGCGGAGUCG,chr1/93784930-93785014,,0,0,chr1/93784930-93785014
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,12,93871311,93871374,27.56,GGUAAAAUGGCUGAGUAAGCUUUAGACUAUAAAUCUAAAGAGAGAUUGAGCUCUCUUUUUACCA,****    NEW  HIT  #3  ****,,2,0,chr1/93871311-93871374
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,13,142034640,142034713,49.94,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUUGACUGUUAACUGAAAGGUUGGUGGUGCAAGCCCAUCCAGGGAUG,chr1/142034640-142034713 chr1/145575384-145575457 chr1/146825191-146825264 chr1/142380049-142379976 chr1/142199820-142199747,,0,0,chr1/142034640-142034713
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,14,142192744,142192817,60.55,GUCUCUGUGGUGCAAUCGGUUAGCGCGUUCCGCUGUUAACCGAAAGCUUGGUGGUUCGAGCCCACCCAGGGAUG,chr1/142192744-142192817 chr1/146832272-146832199,,0,0,chr1/142192744-142192817
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,15,142372973,142373046,53.63,GUCUCUGUGGUGCAAUCGGUUAGCGCGUUCCGCUGUUAACCGAAAGCUUGGUGGUUUGAGCCCACCCAGGGAUG,chr1/142372973-142373046,,0,0,chr1/142372973-142373046
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,16,143134416,143134491,44.19,GUCUCUGUGGCGCCAUCGGUUAGUGCCUUCGGCUGUUUGAACCGAAAGGCUGGUGGUUCAAGCCCACCCAGAGAUG,chr1/143134416-143134491,,0,0,chr1/143134416-143134491
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,17,143670771,143670841,34.58,GCAUUGGUAGUUCAGCGGUGGCAUUCUCCCCACCUACGCGGGAGACCUGGGUUCAACUCCCGGCCAAAGCA,chr1/143670771-143670841,,0,0,chr1/143670771-143670841
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,18,143680188,143680258,40.35,GCGUUGGCAGUUCAGUGGUAGAAUUCUCGCCUCCCACCCGGGAGACCUGGAUUCCAUUUCCGGCAAAUGCA,****    NEW  HIT  #4  ****,,2,0,chr1/143680188-143680258
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,19,143692496,143692567,70.14,GGUUCCAUGGUGUAAUGGUGAGCACUCUGGACUCUGAAUCCAGCGAUCCGAGUUCGAGUCUCGGUGGAACCU,chr1/143692496-143692567,,0,0,chr1/143692496-143692567
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,20,144051850,144051921,64.60,GCCGUGAUCGUAUAGUGGUUAGUACUCUGCGUUGUGGCCGCAGCAACCUCGGUUCGAAUCCGAGUCACGGCA,chr15/43209405-43209476 chr15/43208738-43208667 chr15/43206931-43206860 chr1/144051850-144051921 chr1/145451318-145451389 chr1/145472763-145472692 chr1/143145639-143145568 chr6/27233885-27233956 chr9/14424009-14423938,,0,0,chr1/144051850-144051921
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,21,144057255,144057326,23.34,UCCCUGGUGGUCUGGUGGCUAGAAUUUAGCGCUUUCACCGCCGCAGCUCGGGUUGGAUUACCAGUCAGGGAA,chr1/144057255-144057326,,0,0,chr1/144057255-144057326
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,22,145416876,145416949,52.05,GUCUCUGUGGCGCAAUCGGUCAGAGCGUUCGGCUAUUAACCGAACGGUGAGUAGUUCAAGACCACCCAGGGACG,chr1/145416876-145416949,,0,0,chr1/145416876-145416949
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,23,145451318,145451389,64.60,GCCGUGAUCGUAUAGUGGUUAGUACUCUGCGUUGUGGCCGCAGCAACCUCGGUUCGAAUCCGAGUCACGGCA,chr15/43209405-43209476 chr15/43208738-43208667 chr15/43206931-43206860 chr1/144051850-144051921 chr1/145451318-145451389 chr1/145472763-145472692 chr1/143145639-143145568 chr6/27233885-27233956 chr9/14424009-14423938,,0,0,chr1/145451318-145451389
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,24,145488695,145488766,21.42,GCGGUGAUCGUAUUGUGGUUAGUACUCUGCGCUGUGGCCCCAGCAGCCUUGUCUCCAAUCCGAGUCAUGGCC,****    NEW  HIT  #5  ****,,2,0,chr1/145488695-145488766
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,25,145498784,145498855,56.27,GGUUCCAUGGUGUAAUGGUAAGCACUCUGGACUCUGAAUCCAGCCAUCUGAGUUCGAGUCUCUGUGGAACCU,chr1/145498784-145498855,,0,0,chr1/145498784-145498855
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,26,145523536,145523607,43.65,GGUUCCAUGGGUUAAUGGUGAGCACCCUGGACUCUGAAUCAAGCGAUCCGAGUUCAAAUCUCGGUGGUACCU,chr1/145523536-145523607,,0,0,chr1/145523536-145523607
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,27,145575384,145575457,49.94,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUUGACUGUUAACUGAAAGGUUGGUGGUGCAAGCCCAUCCAGGGAUG,chr1/142034640-142034713 chr1/145575384-145575457 chr1/146825191-146825264 chr1/142380049-142379976 chr1/142199820-142199747,,0,0,chr1/145575384-145575457
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,28,145698652,145698725,72.59,GUCUCUGUGGCGUAGUCGGUUAGCGCGUUCGGCUGUUAACCGAAAAGUUGGUGGUUCGAGCCCACCCAGGAACG,chr1/145698652-145698725,,0,0,chr1/145698652-145698725
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,29,146441891,146441962,39.28,GGUUCCAUGGUGUAAUGGUGAGGGCUUUGGACUCUGACUACAGUGAUCAGAGUUCAAGUCUCAGUGGGACCU,chr1/146441891-146441962,,0,0,chr1/146441891-146441962
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,30,146532825,146532896,28.12,GCCGUGAUCUUAUUGUGGUUAGUACUUUACGCGGUGGCCGCAGCAGCCUGGGCUCGAAUCCCAGUCGUGGCA,****    NEW  HIT  #6  ****,,2,0,chr1/146532825-146532896
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,31,146536438,146536508,31.40,GCAUUGGCGGUACAGUGGCAGAAUUCUCGCCUCCCACACGGGAGACCUGGAUUCCAUUUCCGGCAAAUGCA,****    NEW  HIT  #7  ****,,2,0,chr1/146536438-146536508
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,32,146548652,146548723,68.81,GGUUCCAUGGUGUAAUGGUAAGCACUCUGGACUCUGAAUCCAGCGAUCCGAGUUCGAGUCUCGGUGGAACCU,chr1/146548652-146548723 chr1/145435300-145435229,,0,0,chr1/146548652-146548723
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,33,146825191,146825264,49.94,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUUGACUGUUAACUGAAAGGUUGGUGGUGCAAGCCCAUCCAGGGAUG,chr1/142034640-142034713 chr1/145575384-145575457 chr1/146825191-146825264 chr1/142380049-142379976 chr1/142199820-142199747,,0,0,chr1/146825191-146825264
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,34,146936384,146936452,21.24,UCCCUGGUAGUCUAGUGGCUAAAGUUUGGCGCUUUCACCGCCGGGACUGGUUGAUUCCAGAUCAGGGGA,chr1/146936384-146936452,,0,0,chr1/146936384-146936452
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,35,150860518,150860589,68.96,AGCAGAGUGGCGCAGCGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUA,chr17/81131481-81131410 chr1/150860518-150860589 chr6/26394733-26394804 chr6/27978321-27978250 chr6/27668650-27668579 chr6/27408814-27408743 chr6/26438579-26438508 chr6/26421402-26421331,,0,0,chr1/150860518-150860589
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,36,158607453,158607525,36.00,UCCCUGGUGGUCUAGUGGCUAGGAUUCUAGUGCUUUAACUGCCAGCGCCCAGGUUCAAUUCCCGGUUAGGAAA,chr1/158607453-158607525,,0,0,chr1/158607453-158607525
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,37,158628115,158628197,77.20,GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUCCUGACA,chr1/158628115-158628197 chr1/158687515-158687597 chr1/158694896-158694978 chr1/158702306-158702388 chr1/158709687-158709769 chr1/158768988-158768906 chr6/26629415-26629497,,0,0,chr1/158628115-158628197
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,38,158629886,158629956,82.13,GCAUGGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCCAUGCA,chr1/158629886-158629956 chr1/158689241-158689311 chr1/158696672-158696742 chr1/158704032-158704102 chr21/17749048-17748978,,0,0,chr1/158629886-158629956
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,39,158687515,158687597,77.20,GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUCCUGACA,chr1/158628115-158628197 chr1/158687515-158687597 chr1/158694896-158694978 chr1/158702306-158702388 chr1/158709687-158709769 chr1/158768988-158768906 chr6/26629415-26629497,,0,0,chr1/158687515-158687597
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,40,158689241,158689311,82.13,GCAUGGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCCAUGCA,chr1/158629886-158629956 chr1/158689241-158689311 chr1/158696672-158696742 chr1/158704032-158704102 chr21/17749048-17748978,,0,0,chr1/158689241-158689311
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,41,158694896,158694978,77.20,GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUCCUGACA,chr1/158628115-158628197 chr1/158687515-158687597 chr1/158694896-158694978 chr1/158702306-158702388 chr1/158709687-158709769 chr1/158768988-158768906 chr6/26629415-26629497,,0,0,chr1/158694896-158694978
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,42,158696672,158696742,82.13,GCAUGGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCCAUGCA,chr1/158629886-158629956 chr1/158689241-158689311 chr1/158696672-158696742 chr1/158704032-158704102 chr21/17749048-17748978,,0,0,chr1/158696672-158696742
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,43,158702306,158702388,77.20,GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUCCUGACA,chr1/158628115-158628197 chr1/158687515-158687597 chr1/158694896-158694978 chr1/158702306-158702388 chr1/158709687-158709769 chr1/158768988-158768906 chr6/26629415-26629497,,0,0,chr1/158702306-158702388
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,44,158704032,158704102,82.13,GCAUGGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCCAUGCA,chr1/158629886-158629956 chr1/158689241-158689311 chr1/158696672-158696742 chr1/158704032-158704102 chr21/17749048-17748978,,0,0,chr1/158704032-158704102
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,45,158709687,158709769,77.20,GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUCCUGACA,chr1/158628115-158628197 chr1/158687515-158687597 chr1/158694896-158694978 chr1/158702306-158702388 chr1/158709687-158709769 chr1/158768988-158768906 chr6/26629415-26629497,,0,0,chr1/158709687-158709769
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,46,158719130,158719200,69.00,GCAUAGGUGGUUCAGUGGUAGAAUUCUUGCCUGCCACGCAGGAGGCCCAGGUUUGAUUCCUGGCCCAUGCA,chr1/158719130-158719200,,0,0,chr1/158719130-158719200
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,47,158761709,158761780,27.93,UCCUUGUUACUAUAGUGGUGAGUAUCUCUGCCUGUCAUGCGUGAGAGAGGGGGUCGAUUCCCCGACGGGGAG,chr1/158761709-158761780,,0,0,chr1/158761709-158761780
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,48,158769677,158769748,73.24,GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA,chr1/158769677-158769748 chr1/158708392-158708321 chr1/158701011-158700940 chr1/158693601-158693530 chr1/158686220-158686149 chr1/143146622-143146551,,0,0,chr1/158769677-158769748
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,49,158770689,158770760,34.05,UACUCGUUAGUAUAGUGGUGCGUAUCCCCGUCUGUCACGCGGGAGAGCGGGGUUCGCUCUCCCGACGGGGAG,chr1/158770689-158770760,,0,0,chr1/158770689-158770760
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,50,158778805,158778878,83.64,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAUCCCACCCAGGGACG,chr1/158778805-158778878,,0,0,chr1/158778805-158778878
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,51,162753527,162753599,42.39,GUCUAGCUAGAUCAGUUGGUAGAGCAUAAGACUCUUAAUCUCAGGGUCAUGGGUUUGAGCCCUACGUUGGGCG,chr1/162753527-162753599,,0,0,chr1/162753527-162753599
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,52,164871339,164871410,76.50,GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUCGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC,chr16/3222334-3222405 chr17/8326788-8326717 chr1/164871339-164871410,,0,0,chr1/164871339-164871410
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,53,175917414,175917486,21.41,GGCAGUAAAGUAGGGUGGUUAAGACAAGGGGCUCUGGAGCAAGACUGCCCAAGAUCAAAUCCUGGUGCUGCCA,chr1/175917414-175917486,,0,0,chr1/175917414-175917486
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,54,201653088,201653160,83.78,GCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCG,chr11/59103240-59103168 chr17/8223039-8223111 chr1/201653088-201653160 chr1/201653663-201653591 chr6/29026798-29026870,,0,0,chr1/201653088-201653160
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,55,202620704,202620776,62.86,GCCCGGAGAGCUCAGUGGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCUCGUUCGGGCA,chr1/202620704-202620776,,0,0,chr1/202620704-202620776
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,56,219694638,219694710,83.00,GGCUCCAUAGCUCAGUGGUUAGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCGAUCCUCGCUGGGGCCU,chr1/219694638-219694710,,0,0,chr1/219694638-219694710
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,57,235145523,235145588,35.35,GGUAAAAUGACUGAGUAAGCAUUAGACUAUAAAUCUAAAGACAGAGGUCAAGACCUCUUUUUACCA,****    NEW  HIT  #8  ****,,2,0,chr1/235145523-235145588
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,58,235147011,235147082,33.24,UAGGACUUGGUGUAAUAGGUAGCACGAAGAGAUUUGGAUUCUCAGGGGUAGGUUCAAUUCCUAUAGUUCUGG,chr1/235147011-235147082,,0,0,chr1/235147011-235147082
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,59,245982899,245983004,65.67,GUCAGGAUGGCCGAGUGGUCUAAGGCGCCAGACUCAAGGUAAGCACCUUGCCUGCGGGCUUUCUGGUCUCCGGAUGGAGGCGUGGGUUCGAAUCCCACUUCUGACA,chr1/245982899-245983004,,0,0,chr1/245982899-245983004
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,0,60,245983292,245983363,71.48,UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGAAA,chr1/245983292-245983363,,0,0,chr1/245983292-245983363
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,61,235148179,235148105,29.84,GUUAAGAUGGCAGAGCCCAGCAAUUGCAUAAAACUUAAAACUUUACAAUCAGAGGUUCAACUCCUCUUCUUAACA,chr1/235148179-235148105,,0,0,chr1/235148179-235148105
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,62,229482799,229482555,20.72,UAUUAUAUAAUAUAAUAUAUAUUAUUAUAUAUUUAUAUAUUAUAUAAUAUUAUAUAAUAUUAUAUAAUAUUAUUAUAUAUUAUAUAAUUAUAUAUUAUUAUAUAAUAUUAUUAUAUAUUAUAUAAUGUAAUAUAUAAUUAUAUAAUAUUAUUAUAUAUUAUAUAAUGUAAUAUAUAAUUAUAUAAUAUUAUUAUAUAUUAUAUAAUAUAAUAUAUAAUAUAUAAUAUAAUAUUAUUAUAUAAUAU,****    NEW  HIT  #9  ****,,2,0,chr1/229482799-229482555
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,63,204261929,204261853,23.57,GCCAGGAGAGCUCAGUGGUGAUGGGAUGAGAUCUGGACUCACACCUCUAGGCCUGGGUUCAAAUCCCAGGUCUAGCG,chr1/204261929-204261853,,0,0,chr1/204261929-204261853
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,64,201653663,201653591,83.78,GCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCG,chr11/59103240-59103168 chr17/8223039-8223111 chr1/201653088-201653160 chr1/201653663-201653591 chr6/29026798-29026870,,0,0,chr1/201653663-201653591
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,65,177423729,177423657,48.25,GUUUCCAUAGUGUACUGGUUAUCACAUUCACCUAACACGCGAAAGGUCCUUGGUUUGAAACCAGGCAGAAACA,chr1/177423729-177423657,,0,0,chr1/177423729-177423657
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,66,169396983,169396915,26.17,CCCUGUGGUCUAGUGGUUAGGAGUUGGUGCUUUCGUCAUGACAGCCCAGGUUCAAUUCCUGGUUAGAGA,chr1/169396983-169396915,,0,0,chr1/169396983-169396915
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,67,164872173,164872102,75.90,GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC,chr11/75672865-75672936 chr14/19071759-19071688 chr14/19067694-19067623 chr16/3239919-3239990 chr16/3232991-3232920 chr1/164872173-164872102 chr6/26663477-26663548 chr7/127977466-127977537,,0,0,chr1/164872173-164872102
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,68,162850999,162850927,21.46,GUUUCUGUGGUGUAGUAGUUACCACGCUGGCCUAACACACGGAAGGUCCUCUGUUUGAAACUUGACGGAAACA,****    NEW  HIT  #10  ****,,2,0,chr1/162850999-162850927
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,69,158768988,158768906,77.20,GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUCCUGACA,chr1/158628115-158628197 chr1/158687515-158687597 chr1/158694896-158694978 chr1/158702306-158702388 chr1/158709687-158709769 chr1/158768988-158768906 chr6/26629415-26629497,,0,0,chr1/158768988-158768906
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,70,158762481,158762411,81.60,GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA,chr16/70599592-70599662 chr16/70589194-70589124 chr17/8229630-8229700 chr1/158762481-158762411 chr2/157460274-157460204 chr6/27978735-27978665,,0,0,chr1/158762481-158762411
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,71,158709050,158708979,72.91,UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG,chr12/94932267-94932338 chr12/123777363-123777292 chr12/123765061-123764990 chr17/8326193-8326122 chr1/158709050-158708979 chr1/158701669-158701598 chr1/158694259-158694188 chr1/158686878-158686807 chr1/158627478-158627407 chr6/27555432-27555503 chr6/27579502-27579573,,0,0,chr1/158709050-158708979
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,72,158708392,158708321,73.24,GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA,chr1/158769677-158769748 chr1/158708392-158708321 chr1/158701011-158700940 chr1/158693601-158693530 chr1/158686220-158686149 chr1/143146622-143146551,,0,0,chr1/158708392-158708321
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,73,158708034,158707963,76.59,UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA,chr1/158708034-158707963 chr1/158700654-158700583 chr1/158693243-158693172 chr1/158685863-158685792 chr1/143147991-143147920 chr6/29057966-29058037 chr6/126082034-126081963,,0,0,chr1/158708034-158707963
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,74,158701669,158701598,72.91,UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG,chr12/94932267-94932338 chr12/123777363-123777292 chr12/123765061-123764990 chr17/8326193-8326122 chr1/158709050-158708979 chr1/158701669-158701598 chr1/158694259-158694188 chr1/158686878-158686807 chr1/158627478-158627407 chr6/27555432-27555503 chr6/27579502-27579573,,0,0,chr1/158701669-158701598
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,75,158701011,158700940,73.24,GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA,chr1/158769677-158769748 chr1/158708392-158708321 chr1/158701011-158700940 chr1/158693601-158693530 chr1/158686220-158686149 chr1/143146622-143146551,,0,0,chr1/158701011-158700940
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,76,158700654,158700583,76.59,UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA,chr1/158708034-158707963 chr1/158700654-158700583 chr1/158693243-158693172 chr1/158685863-158685792 chr1/143147991-143147920 chr6/29057966-29058037 chr6/126082034-126081963,,0,0,chr1/158700654-158700583
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,77,158694259,158694188,72.91,UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG,chr12/94932267-94932338 chr12/123777363-123777292 chr12/123765061-123764990 chr17/8326193-8326122 chr1/158709050-158708979 chr1/158701669-158701598 chr1/158694259-158694188 chr1/158686878-158686807 chr1/158627478-158627407 chr6/27555432-27555503 chr6/27579502-27579573,,0,0,chr1/158694259-158694188
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,78,158693601,158693530,73.24,GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA,chr1/158769677-158769748 chr1/158708392-158708321 chr1/158701011-158700940 chr1/158693601-158693530 chr1/158686220-158686149 chr1/143146622-143146551,,0,0,chr1/158693601-158693530
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,79,158693243,158693172,76.59,UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA,chr1/158708034-158707963 chr1/158700654-158700583 chr1/158693243-158693172 chr1/158685863-158685792 chr1/143147991-143147920 chr6/29057966-29058037 chr6/126082034-126081963,,0,0,chr1/158693243-158693172
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,80,158686878,158686807,72.91,UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG,chr12/94932267-94932338 chr12/123777363-123777292 chr12/123765061-123764990 chr17/8326193-8326122 chr1/158709050-158708979 chr1/158701669-158701598 chr1/158694259-158694188 chr1/158686878-158686807 chr1/158627478-158627407 chr6/27555432-27555503 chr6/27579502-27579573,,0,0,chr1/158686878-158686807
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,81,158686220,158686149,73.24,GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA,chr1/158769677-158769748 chr1/158708392-158708321 chr1/158701011-158700940 chr1/158693601-158693530 chr1/158686220-158686149 chr1/143146622-143146551,,0,0,chr1/158686220-158686149
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,82,158685863,158685792,76.59,UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA,chr1/158708034-158707963 chr1/158700654-158700583 chr1/158693243-158693172 chr1/158685863-158685792 chr1/143147991-143147920 chr6/29057966-29058037 chr6/126082034-126081963,,0,0,chr1/158685863-158685792
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,83,158627478,158627407,72.91,UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG,chr12/94932267-94932338 chr12/123777363-123777292 chr12/123765061-123764990 chr17/8326193-8326122 chr1/158709050-158708979 chr1/158701669-158701598 chr1/158694259-158694188 chr1/158686878-158686807 chr1/158627478-158627407 chr6/27555432-27555503 chr6/27579502-27579573,,0,0,chr1/158627478-158627407
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,84,158626824,158626753,55.93,GCGUUGGUGGUAUAGUGGUGAGCAUAGUUGCCUUCCAAGCAGUUGACCCGGGCUCGAUUCCCGCCCAACGCA,chr1/158626824-158626753,,0,0,chr1/158626824-158626753
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,85,158614732,158614659,82.22,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG,chr10/22522517-22522444 chr13/29046174-29046101 chr17/37283070-37282997 chr19/1334562-1334635 chr1/158614732-158614659,,0,0,chr1/158614732-158614659
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,86,158608746,158608675,72.31,UCCCUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA,chr1/158608746-158608675 chr1/16242926-16242855,,0,0,chr1/158608746-158608675
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,87,158586354,158586282,87.37,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr1/158586354-158586282 chr5/180633732-180633804 chr5/180710312-180710384 chr5/180759129-180759057 chr5/180638987-180638915 chr6/26646261-26646333,,0,0,chr1/158586354-158586282
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,88,156328266,156328193,76.27,GUCUCUGUGGCGCAAUGGACGAGCGCGCUGGACUUCUAAUCCAGAGGUUCCGGGUUCGAGUCCCGGCAGAGAUG,chr1/156328266-156328193,,0,0,chr1/156328266-156328193
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,89,147234034,147233964,48.19,GGGGGUGUAGAUCAGUGGUAGGGCGCACGCUUAGCAUGCAUGAGGCCCUGGGUCAAUCCCCAGCACCUCCA,chr1/147234034-147233964,,0,0,chr1/147234034-147233964
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,90,146944923,146944853,21.59,GGAUUUGUGGUCCAGUGGUAGAAUUCUCACCGCCUGCAUAGGAGACCCUGGUUUAAUUCCUGGCCAAUGCA,chr1/146944923-146944853,,0,0,chr1/146944923-146944853
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,91,146928453,146928380,71.41,GUCUCUGUGGCGCAAUCGGCUAGCGCGUUUGGCUGUUAACUAAAAGGUUGGUGGUUCGAACCCACCCAGAGGCG,chr1/146928453-146928380,,0,0,chr1/146928453-146928380
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,92,146900743,146900670,77.13,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGUAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr1/146900743-146900670,,0,0,chr1/146900743-146900670
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,93,146896862,146896792,49.62,GCACUGGUGGUUCAGUGGUAGAAUUCUCGCCUCCCACGCGGGAGACCCGGGUUUAAUUCCCGGUCAAGAUA,chr1/146896862-146896792,,0,0,chr1/146896862-146896792
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,94,146889558,146889487,32.28,UGCAUGGUUGUCUAGUGGCUAGGAUUCGGUGCUGAAAGCGUCACGGCCCGGGUUCGAUUCCCGGUCAGGGAA,chr1/146889558-146889487,,0,0,chr1/146889558-146889487
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,95,146886712,146886639,46.90,AUCUCCGUGGAGCAAUUGGUUAGCGCGUUCGGCCGUUAACCGGAAAGUUGGUGGUUCGAGCCUACCCAGGGACG,chr1/146886712-146886639,,0,0,chr1/146886712-146886639
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,96,146881009,146880937,40.42,UCCCUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCUGCAGCUCGAGUUCGAUUCCUGGUCAGGGAA,chr1/146881009-146880937,,0,0,chr1/146881009-146880937
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,97,146832272,146832199,60.55,GUCUCUGUGGUGCAAUCGGUUAGCGCGUUCCGCUGUUAACCGAAAGCUUGGUGGUUCGAGCCCACCCAGGGAUG,chr1/142192744-142192817 chr1/146832272-146832199,,0,0,chr1/146832272-146832199
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,98,146661154,146661082,82.04,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACUGGGCGGAAACA,chr1/146661154-146661082,,0,0,chr1/146661154-146661082
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,99,146657263,146657193,60.60,GCACUGGUGGUUCAGUGGUAGAAUUCUCGCCUCACACGCGGGACACCCGGGUUCAAUUCCCGGUCAAGGCA,chr1/146657263-146657193,,0,0,chr1/146657263-146657193
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,100,146649957,146649886,32.32,UGCAUGGUUGUCUAGUGGCUAGGAUUCGGUGCUGAAAGAGCCACGGCCCGGGUUCGAUUCCCGGUCAGGGAA,chr1/146649957-146649886,,0,0,chr1/146649957-146649886
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,101,146647103,146647030,51.17,AUCUCCGUGGAGCAAUUGGUUAGCGCGUUCGGCUGUUAACCGGAAAGUUGGUGGUUCGAGCCUACCCAGGGACG,chr1/146647103-146647030,,0,0,chr1/146647103-146647030
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,102,146641384,146641312,35.29,UCCGUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCUGCAGCUCGAGUUCGAUUCCUGGUCAGGGAA,chr1/146641384-146641312,,0,0,chr1/146641384-146641312
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,103,146593170,146593097,77.14,GUCUCUGUGGCGCAAUGGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCAUCCAGGGACG,chr1/146593170-146593097,,0,0,chr1/146593170-146593097
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,104,146574548,146574475,41.70,GUCUCUGUGGCACAAUCGGUUAGAGCGUUCGGCUGUUAAUCUAAAGGUUGGUGGCUAGAACCCACUGAGGGACG,chr1/146574548-146574475,,0,0,chr1/146574548-146574475
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,105,146524226,146524155,41.66,UGUCUGGUGGUCAAGUGGCUAGGAUUUGGCGCUUUCACUGCCGCGGCCCGCGUUCGAUUCCCGGUCAGGGAA,chr1/146524226-146524155,,0,0,chr1/146524226-146524155
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,106,146518426,146518355,61.06,GCCAUGAUCGUAUAGUGGUUAGUACUCUGCGCUGUGGCCGCAGCAACCUCGGUUCGAAUCCGAGUCACGGCA,chr1/146518426-146518355,,0,0,chr1/146518426-146518355
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,107,146122956,146122883,80.50,GUCUCUGUGGCGCAAUCGGUUAGCGCAUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG,chr1/146122956-146122883 chr1/145960914-145960841,,0,0,chr1/146122956-146122883
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,108,145960914,145960841,80.50,GUCUCUGUGGCGCAAUCGGUUAGCGCAUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG,chr1/146122956-146122883 chr1/145960914-145960841,,0,0,chr1/145960914-145960841
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,109,145548980,145548907,34.27,GUCUCUGUGGCACAAUCGGUUAGCUUGUUCGGCUGUUAAUCUAGAGGUUGGUGGUUAGAGCCCACUGAGGGAUG,chr1/145548980-145548907,,0,0,chr1/145548980-145548907
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,110,145487401,145487332,27.14,GUCUCUGUUGCGCAAUCAGCGCGUUUGGCUGUUAACAGAAAGGCUGGUGGUCCGAGCCCAACCAGGGACU,****    NEW  HIT  #11  ****,,2,0,chr1/145487401-145487332
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,111,145478948,145478877,43.40,UCCUUGGUGGUCUAGUGGCUAGGAUUCGGUGCUUUCACCUGUGCGGCCCGGGUUCAAUUCCCGAUGAAGGAA,chr1/145478948-145478877,,0,0,chr1/145478948-145478877
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,112,145472763,145472692,64.60,GCCGUGAUCGUAUAGUGGUUAGUACUCUGCGUUGUGGCCGCAGCAACCUCGGUUCGAAUCCGAGUCACGGCA,chr15/43209405-43209476 chr15/43208738-43208667 chr15/43206931-43206860 chr1/144051850-144051921 chr1/145451318-145451389 chr1/145472763-145472692 chr1/143145639-143145568 chr6/27233885-27233956 chr9/14424009-14423938,,0,0,chr1/145472763-145472692
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,113,145435300,145435229,68.81,GGUUCCAUGGUGUAAUGGUAAGCACUCUGGACUCUGAAUCCAGCGAUCCGAGUUCGAGUCUCGGUGGAACCU,chr1/146548652-146548723 chr1/145435300-145435229,,0,0,chr1/145435300-145435229
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,114,145414656,145414585,31.00,GCGUCAGUGGUUUUAGUGGUGGAAUUCCUGCCUCCCAUGCACGAGAUCCGUGUUCAACUCCUGGUUGGUGCA,****    NEW  HIT  #12  ****,,2,0,chr1/145414656-145414585
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,115,143983908,143983837,39.98,GGUUCCAUGGUGUAAUGGUGACCACUUUGGACUCUGAAUACAGUGAUCAGAGUUCAAGUCUCACUGGAACCU,chr1/143983908-143983837,,0,0,chr1/143983908-143983837
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,116,143708299,143708226,70.42,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACUGAAAGGUUAGUGGUUCGAGCCCACCCGGGGACG,chr1/143708299-143708226,,0,0,chr1/143708299-143708226
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,117,143147991,143147920,76.59,UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA,chr1/158708034-158707963 chr1/158700654-158700583 chr1/158693243-158693172 chr1/158685863-158685792 chr1/143147991-143147920 chr6/29057966-29058037 chr6/126082034-126081963,,0,0,chr1/143147991-143147920
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,118,143146622,143146551,73.24,GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA,chr1/158769677-158769748 chr1/158708392-158708321 chr1/158701011-158700940 chr1/158693601-158693530 chr1/158686220-158686149 chr1/143146622-143146551,,0,0,chr1/143146622-143146551
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,119,143145639,143145568,64.60,GCCGUGAUCGUAUAGUGGUUAGUACUCUGCGUUGUGGCCGCAGCAACCUCGGUUCGAAUCCGAGUCACGGCA,chr15/43209405-43209476 chr15/43208738-43208667 chr15/43206931-43206860 chr1/144051850-144051921 chr1/145451318-145451389 chr1/145472763-145472692 chr1/143145639-143145568 chr6/27233885-27233956 chr9/14424009-14423938,,0,0,chr1/143145639-143145568
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,120,143144281,143144209,80.45,GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG,chr16/3225977-3226049 chr1/143144281-143144209 chr5/180744417-180744489 chr5/180758713-180758641 chr6/26664753-26664825,,0,0,chr1/143144281-143144209
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,121,143128078,143128007,44.37,GGUUCCAUGGUGUAAUGGUGAGCACUUUGGACUCUGAAUACAGUGAUCAGAGUUCAAGUCUCACUGGGACCU,chr1/143128078-143128007 chr1/142592329-142592258,,0,0,chr1/143128078-143128007
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,122,142592329,142592258,44.37,GGUUCCAUGGUGUAAUGGUGAGCACUUUGGACUCUGAAUACAGUGAUCAGAGUUCAAGUCUCACUGGGACCU,chr1/143128078-143128007 chr1/142592329-142592258,,0,0,chr1/142592329-142592258
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,123,142380049,142379976,49.94,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUUGACUGUUAACUGAAAGGUUGGUGGUGCAAGCCCAUCCAGGGAUG,chr1/142034640-142034713 chr1/145575384-145575457 chr1/146825191-146825264 chr1/142380049-142379976 chr1/142199820-142199747,,0,0,chr1/142380049-142379976
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,124,142199820,142199747,49.94,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUUGACUGUUAACUGAAAGGUUGGUGGUGCAAGCCCAUCCAGGGAUG,chr1/142034640-142034713 chr1/145575384-145575457 chr1/146825191-146825264 chr1/142380049-142379976 chr1/142199820-142199747,,0,0,chr1/142199820-142199747
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,125,142008243,142008170,43.03,GUCUCUGUGGCACAAUCGGUUAGCGCGUUCGGCUGUUAAUCUAGAGGUUGGUGGUUAGAGCCCACUGAGGGAUG,chr1/142008243-142008170,,0,0,chr1/142008243-142008170
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,126,107851019,107850949,20.63,GGCAGCAUGGUUUAAUGGGAACACUUAAGGUCAGGAGUCAGGAGACCUGGGUUCUAGUCCCAGAUCUGUCU,chr1/107851019-107850949,,0,0,chr1/107851019-107850949
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,127,93453707,93453635,74.35,GGGGGUAUAGCUCAGGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU,chr1/93453707-93453635,,0,0,chr1/93453707-93453635
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,128,54793532,54793460,58.72,GCCCAGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUUGAGCCCCACGUUUGGUG,chr1/54793532-54793460,,0,0,chr1/54793532-54793460
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,129,16562052,16561981,25.47,GGUUCCAUGAUGUAAUGGUGAGCGCUUUGGACUCUGAGUACGGUGAUCAGCGUUCAAGUCUCAGUGGGACCU,chr1/16562052-16561981,,0,0,chr1/16562052-16561981
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,130,16387654,16387582,52.95,GUUUCUGUGGUGUAGUGGUUAUCAUGUUCGCCUCACACGAGAAAAGUCCCUGAUUCGAGACUGGGUGGGAACG,chr1/16387654-16387582,,0,0,chr1/16387654-16387582
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,131,16385917,16385847,69.73,GCGUUGGUGGUUUAGUGGUAGAAUUCUCGCCUCCCAUGCGGGAGACCCGGGUUCAAUUCCCGGCCACUGCA,chr1/16385917-16385847,,0,0,chr1/16385917-16385847
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,132,16255313,16255241,41.93,GUUUCUGUGGUGUAGUGGUUAUUAUGUUCGCUUCACAUAUGAAAGGUCUCUGGUUCGAGACUGCGUGGGAACA,chr1/16567774-16567846 chr1/16255313-16255241,,0,0,chr1/16255313-16255241
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,133,16253585,16253515,78.29,GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA,chr1/16569497-16569567 chr1/16253585-16253515,,0,0,chr1/16253585-16253515
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,134,16242926,16242855,72.31,UCCCUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA,chr1/158608746-158608675 chr1/16242926-16242855,,0,0,chr1/16242926-16242855
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,135,16240047,16239974,48.79,GUCUCUGUGGUGCAAUCGGUUAGCGCGUUCGGCUGUUAACCAUAAGGUUGGUGGUUACAGACCACCCAGGGACG,chr1/16240047-16239974,,0,0,chr1/16240047-16239974
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,136,16228234,16228161,77.64,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACUGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG,chr1/16228234-16228161,,0,0,chr1/16228234-16228161
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,137,7699954,7699885,35.51,UCCCUGGUAGUCUAGUGGUUAGGAUUCCGCGCUCGCCAUCACGACCCGGGUUCGAUUCCUGGUCAGGGAA,chr1/7699954-7699885,,0,0,chr1/7699954-7699885
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,138,606142,606070,22.06,UAGAUUGAAGCCAGUUGAUUAGGGUGCUUAGCUGUUAACUAAGUGUUUGUGGGUUUAAGUCCCAUUGGUCUAG,****    NEW  HIT  #13  ****,,2,0,chr1/606142-606070
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz,0,chr1,0,emb|chr1| ,1,139,606304,606239,30.96,GGUAAAAUGGCUGAGUGAAGCAUUGGACUGUAAAUCUAAAGACAGGGGUUAAGCCUCUUUUUACCA,****    NEW  HIT  #14  ****,,2,0,chr1/606304-606239
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,140,11713566,11713637,43.39,UACUCAGUGGUCUAGUGGUUAGGAUUCAGCGCUCCCACCGCCGCAGCCCGGGUUCGAUUCCCGGUCAUGGAA,chr2/11713566-11713637,,0,0,chr2/11713566-11713637
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,141,24614866,24615109,20.03,AUUUAUAUAUUAUAAUAUAUAUUAUAUUAUAAUAUAUAUUUAUAUUAUAAUAUAUUAUAUUAUAAUAUAUAUUAUAUUAUUAUAUAUUAUAAUAUAAUAUAUAUUAUAAUAUAUAUUAUAUUAUAAUUUAUAUAUUAUAUAUAUUAUAAUAUAUAUUAUAUUAUAUAUAUAUUUAUAUUAUAAUAUAUAUUAUUAUAUAUUAUAUAUUAUAAUUUAUAUUAUAUUACAAUAUAUAUUAUAAAUA,****    NEW  HIT  #15  ****,,2,0,chr2/24614866-24615109
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,142,27248185,27248273,75.85,CCUUCGAUAGCUCAGUUGGUAGAGCGGAGGACUGUAGUGGAUAGGGCGUGGCAAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGA,chr2/27248185-27248273,,0,0,chr2/27248185-27248273
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,143,27248617,27248689,63.65,GGGGGAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCA,chr2/27248617-27248689 chr8/67076385-67076457,,0,0,chr2/27248617-27248689
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,144,30252103,30252175,46.09,GGGCCAGUGGCUCAAUGGAUAAUGCGUCUGACUAAGAAUCAGAAGAUUCCAGCCUUGACUCCUGGCUGGCUCA,chr2/30252103-30252175,,0,0,chr2/30252103-30252175
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,145,43012211,43012303,68.08,GCUCCAGUGGCGCAAUCGGUUAGCGCGCGGUACUUAUACAGCAGUACAUGCAGAGCAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCA,chr2/43012211-43012303,,0,0,chr2/43012211-43012303
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,146,75098583,75098651,23.51,GCCUGUGGUCUAGUGGUUAGAAUUCAGUGUUUUCAGUGCUCUAGUCCAGGUUCAAUUCCUGGUCAGGGA,chr2/75098583-75098651,,0,0,chr2/75098583-75098651
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,147,77870130,77870200,30.26,GGCUGGUUGGUCUAGGGCUAUGAUUCUCACUUAGGGUGCAAGAGGUCCUGGUUCAAAUCCCAGAGGAGCCC,chr2/77870130-77870200,,0,0,chr2/77870130-77870200
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,148,83020936,83021002,22.92,GCCCUUGUAGUAUAAUUCAAUACUCUGGUCUUGUAAACCAGAAAUGGAGGAUCUCCUCCCCAGGACA,****    NEW  HIT  #16  ****,,2,0,chr2/83020936-83021002
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,149,85060416,85060488,53.55,GGUUCCAUAGUGUAACAGUUAUCAUGUCUGCUUUACACACUGAAGGUCCUGGGUUCAAACUCCAGUGGAACCA,****    NEW  HIT  #17  ****,,2,0,chr2/85060416-85060488
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,150,87314113,87314184,37.04,GGCUGGUUGGUCUAGGGCUAUGAUUCUCACUUAGGGUGCAAAAGGUCCUGGGUUCAAAUCCCAGAGGAGCCC,chr2/87314113-87314184,,0,0,chr2/87314113-87314184
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,151,89715196,89715445,21.56,UAUAUAUUAUAUAUAAUAGUAUUAUAUAUACUAUUAUAUAUUAUAUAUAUUAUAUAUAUAUAAAAUAUAAUAUAAUAUAUAUAAUAUAUAAUAUUAAUAUUAUAUAUAUAAUAUAAUAUAAUAUAUAAUAUAAUAUAAUAUAUAUAUUAAUAAAAUUAUAUUAAUAUAUAAUAUAUAAUAGUAUAUUAUAUACAUAUAUAAUAUAUACAAUAUAUAAUAUCAUAAUAUAUAAUAUGUAUUAUAUAUAUAA,****    NEW  HIT  #18  ****,,2,0,chr2/89715196-89715445
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,152,117876562,117876636,34.03,GUUAAGAUGGCAGAGCCCAGCAAUUGCAUAAAUCUUAAAACUUUAUAAUCAGAGGUUCGACUCCUCUUCUUAACA,chr2/117876562-117876636,,0,0,chr2/117876562-117876636
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,153,132350911,132350980,27.00,GAGAAGGUCAUAGAGGUUAUGGGAUUGGCUUGAAACCAGUCUCUGGGGGGUUCGAUUCCCUCCUUUUUCA,chr2/132350911-132350980,,0,0,chr2/132350911-132350980
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,154,132352421,132352485,26.60,GGUAAAAUGGCUGAGUAAGCAUUAGACUGUAAUCUGAAAACAGAGGUCAAGACCUCUUUUUACCA,****    NEW  HIT  #19  ****,,2,0,chr2/132352421-132352485
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,155,132353902,132353973,25.58,UAGGACGUGGUGUGAUAGGUAGCACGGAGAAUUUUGGAUUCUCAGGGAUGGGUUCAAUUCCUGUAGUUCUAG,chr2/132353902-132353973,,0,0,chr2/132353902-132353973
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,156,141188774,141188845,20.55,UAGAACGUGGUGUGGUAGGUCACAUGGAGAAUUUUGGAUUCUCAGGGAUAGGCUCAAUUCCUAUAGUUCUAG,****    NEW  HIT  #20  ****,,2,0,chr2/141188774-141188845
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,157,151421822,151421894,29.75,UUCCCCUUGGUCUAGUGGUUAGGAUUCAACACUCUCACCGCCGCAGCCCGGGUUUGAUUCCCAGGCAGGGAAG,chr2/151421822-151421894,,0,0,chr2/151421822-151421894
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,158,156322834,156322899,27.57,CGUAAAAUGGCUGAGUAAGGCAUUAGACUGUAAAUCUAAAGACAGAGGCUAAACCUCUUUUUACCA,****    NEW  HIT  #21  ****,,2,0,chr2/156322834-156322899
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,159,157459826,157459897,73.10,GGGGAUGUAGCUCAGUGGUAGAGCGCGCGCUUCGCAUGUGUGAGGUCCCGGGUUCAAUCCCCGGCAUCUCCA,chr2/157459826-157459897,,0,0,chr2/157459826-157459897
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,160,203687177,203687242,36.74,GGUAAAAUGGCUGAGCAAGCAUUAGACUGUAAAUCUAAAGACAGAGGUUAAGGCCUCUUUUUACCA,****    NEW  HIT  #22  ****,,2,0,chr2/203687177-203687242
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,161,206421497,206421568,22.98,CCCCUGGUGGUCUAGUGGUUAGGAUUCGGCACUCUCACCGCCACUGCCCCCGUUCAGUUACCGGUCAGGGAA,****    NEW  HIT  #23  ****,,2,0,chr2/206421497-206421568
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,162,219313091,219313183,55.90,CCUUCAAUAGUUCAGCUGGUAGAGCAGAGGACUAUAGCUACUUCCUCAGUAGGAGACGUCCUUAGGUUGCUGGUUCGAUUCCAGCUUGAAGGA,chr2/219313091-219313183,,0,0,chr2/219313091-219313183
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,0,163,219693672,219693747,22.37,GUGAGACUGCACAGCCCAGUGGUGCAGGGCAUGGCUCUGACACCUGGCGGCCUGGGUUCAAAUCCCAGCUUCUACA,chr2/219693672-219693747,,0,0,chr2/219693672-219693747
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,164,224388926,224388854,33.98,GUUGGGGUAACUCAGUUGGUAGAGUAGCAGACUUUUCAUCUGAGGGUCCAGGGUUUAAGUCCAUGUCCAGGCA,chr2/224388926-224388854,,0,0,chr2/224388926-224388854
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,165,204431744,204431674,39.73,GCAAUGGUGGUUCAGUGGUAGAAUUCUCGCCUUUCACACAGGAGACCCGGGUUCAAUUCCUGACCCAUGUA,chr2/204431744-204431674,,0,0,chr2/204431744-204431674
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,166,159940786,159940715,31.30,CCCCUGGUGGUCUAGUGCUUAGGAUUUGGCACUCUCGCCACCGCAGCCUGCGUUCAAUUCCCGGUCAGGGAA,chr2/159940786-159940715,,0,0,chr2/159940786-159940715
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,167,157460274,157460204,81.60,GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA,chr16/70599592-70599662 chr16/70589194-70589124 chr17/8229630-8229700 chr1/158762481-158762411 chr2/157460274-157460204 chr6/27978735-27978665,,0,0,chr2/157460274-157460204
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,168,145466490,145466242,24.11,AUAUAUAUAGUAUAUUAUAUAAUAUAUAAUAUUAAUAUAUAUUAUAUAAUAUAUAAUAUUAAUAUAUAUUAUAUAAUAUAUAAUAUUAAUAUAUAUUAUAUAAUAUAUAAUAUUAAUAUAUAUUAUAUAAUAUAUAAUAUUAAUAUAUUAUAUAAUAUAUAAUAUUAAUAUAUUAUAUAAUAUAUAAUAUUAAUAUAUAUUAUAUAAUAUAUAAUAUUAAUAUAUAUUAUAUAAUAUAUAAUAUAUAUG,****    NEW  HIT  #24  ****,,2,0,chr2/145466490-145466242
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,169,131188039,131187968,76.44,UCCCAUAUGGUCUAGCGGUUAGGAUUCCUGGUUUUCACCCAGGUGGCCCGGGUUCGACUCCCGGUAUGGGAA,chr13/39432945-39432874 chr2/131188039-131187968,,0,0,chr2/131188039-131187968
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,170,131126360,131126291,31.70,GAGAAGGUCACAGAGGUUAUGGGAUUGGCUUGAAACCAGUCUGUGGGGGGUUCGAUUCCCUCCUUUUUCA,chr2/131126360-131126291,,0,0,chr2/131126360-131126291
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,171,131124568,131124496,25.30,UAGAUUGAAGCCAGUUGAUUAGGGUGUUUAUCUGUUAAUUAAAUGUUCGUGGGUUUAAGUCCCAUCAAUCUAG,****    NEW  HIT  #25  ****,,2,0,chr2/131124568-131124496
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,172,131124730,131124666,23.80,GGUAAAAUGGCUGAGUAAGCAUUAGACUGUAAUCUAAAAACAGAGAUCAAGACCUCUUUUUACCA,****    NEW  HIT  #26  ****,,2,0,chr2/131124730-131124666
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,173,131123249,131123178,28.82,UAGGACGUGGUGUGAUAGGUAGCAUGGAGAAUUUUGGAUUCUCAGGGAUGGGUUCAAUUCCUAUAGUCCUAG,chr2/131123249-131123178,,0,0,chr2/131123249-131123178
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,174,117879221,117879156,28.26,GGUAAAAUGACUGAGUAAGCGUUAGACUGUAAAUCAAAAGAUGGAGGUCAAGGCCUCCUUUUACCA,****    NEW  HIT  #27  ****,,2,0,chr2/117879221-117879156
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,175,117877725,117877654,33.52,UAGGACAUGGUGUAAUAGGUAGAAUGGAGAAUUUUGAAUUCUCAGGGGUAGGUUCAAUUCCUAUAGUUCUAG,chr2/117877725-117877654,,0,0,chr2/117877725-117877654
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,176,95702021,95701950,23.36,CCCCUUGUAGUCUAGUGGUUAGAAUUCUGCGGUCUCACAGCCGCGGCCCGGGUUCGAUUCCCAUUCCGGGAA,chr2/95702021-95701950,,0,0,chr2/95702021-95701950
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,177,71248098,71248026,22.60,CCCCUGGCGGUCUAGUGGUUAGGAUUCGGCGCUCUCAUCCACCGCGGCCUGGGUUCGACUCGUGGUCAGAGUG,chr2/71248098-71248026,,0,0,chr2/71248098-71248026
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,178,70638565,70638495,20.30,UGCACUGUAGCUUAGUGGUCAGAGCACAGCUUAGAAGUCAGUCCGCCUAGGCUCAAAUCCCAGCUCUGUCA,chr2/70638565-70638495,,0,0,chr2/70638565-70638495
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,179,70450727,70450657,76.96,GCGCCGCUGGUGUAGUGGUAUCAUGCAAGAUUCCCAUUCUUGCGACCCGGGUUCGAUUCCCGGGCGGCGCA,chr16/626807-626737 chr2/70450727-70450657,,0,0,chr2/70450727-70450657
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,180,68652060,68651820,20.03,AUAAUUAUAUAUAAAUUAUAUAAAUAUAUAAAUUAUAAAUAUAUAAAUUAUAUAAAUAUAUAAAUUAUAAAUAUAUAAAUUAUAUAAAUAUAUAAAUUAUAAAUAUAUAAAUUAUAUAAAAAUUAUAUAUAUAAUUUAUAUAUAUAAAUUAUAUAAAUUAUAUAUAUAAAUUAUAUAAAUCAUAUAUAUAAAUUAUAUAAAUUAUAUAUAUAAAUUAUAUAUAUAAAUUAUAUAAAUUAUA,****    NEW  HIT  #28  ****,,2,0,chr2/68652060-68651820
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz,0,chr2,0,emb|chr2| ,1,181,45912047,45911975,35.80,GGCUGUGUACCUCAGUGGGCAAGGGUAUGGACUUUGAAGCCAGACUAUUUGGGUUCAAAUCCCAGCUUGGCCU,chr2/45912047-45911975,,0,0,chr2/45912047-45911975
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,0,182,13808887,13808954,26.39,GGCAGGGUAGGGUAGAGGUUAAAACCAUGGAUUCUAGAGCCAGAUGGGUUCAAAUCCCGGCUCUGCCG,chr3/13808887-13808954,,0,0,chr3/13808887-13808954
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,0,183,15227977,15228052,42.35,GCCUGGAUAGCUCCUUCGGUAGAGCAUCAUCAGACUUUUAAUGUGAGGGUCCAGGGUUCAAGUUCCUGUUUGGGCG,****    NEW  HIT  #29  ****,,2,0,chr3/15227977-15228052
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,0,184,34717031,34717274,23.71,AUAUAUAUAUUUUAAUGUAUAUAAAUAUAUAUAAAUUUUUAUUUAUAAAAAUUAAUAUAUCAUUAUAUAUAAAUAUAAAUUUAUAUAUGUAUAUUAUAUAUAUUUAUAUAUUAUAUAAAUAUAUACAAAUUUUAUAUAUAUAAAUUUUAUAAUAUAUAAUAUAUUAUACAUAAAUUUUAUAAUAUAAUAUAUAUUAUAUAUAAUAUAUACAUAUAUAAAUUAUAUAUAAGAUAUAUUAUAUAUA,****    NEW  HIT  #30  ****,,2,0,chr3/34717031-34717274
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,0,185,35566545,35566783,20.82,AUAUAUAUAAUAUAAAUAUAUUAUUUAUAUUUAAUAUAUAUAAUAUAAAUAUAUUAUAUAUAUUUAAUAUAAAUAAUAUAAAUAUAUUAUAUAUAUUUAAUAUAAAUAAUAUAAAUAUAUUAUAUAUAUUUAAUAUAAAUAAUAUAAAUAUAUAUUUAAUAUAAAUAAUAUAAAUAUAUAUUUAAUAUAAAUAAUAUAAAUAUAUAUUUAAUAUAAAUAAUAUAAAUAUAUUAUAUAUU,****    NEW  HIT  #31  ****,,2,0,chr3/35566545-35566783
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,0,186,111679990,111680064,25.03,GGUUCCAUGGUGUAAUGGUGAGCACUCUGGACUCUGAAUCCAGAAUCAGCUUAAAUUAAACCUAUACUGUUACUG,****    NEW  HIT  #32  ****,,2,0,chr3/111679990-111680064
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,0,187,170810931,170811003,86.77,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr3/170810931-170811003 chr5/180700816-180700888 chr5/180706272-180706344 chr5/180755004-180754932 chr6/27829230-27829158,,0,0,chr3/170810931-170811003
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,188,185687078,185687008,43.82,UUCUUGUUAAUAUAGUGGUGAGUAUUCCCACCUGUCAUGCGGGAGACGGGGUUCAAUUCCCUGAUGGGGAG,chr3/185687078-185687008,,0,0,chr3/185687078-185687008
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,189,149637543,149637472,22.48,GCAGUGACUGUAUAGUGGUUAGCACUCUGUGUUGUGGCCACAGCAACCAUGGUUCAAAUCUGAGUCAUGACA,chr3/149637543-149637472,,0,0,chr3/149637543-149637472
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,190,149542218,149542137,20.76,GGUAGCAUGGCUGAGUGGUCUAAGAUUCUGAAUUAAGUCUCCAGUCUCUUUGGGGGCGUGGUUUUCAAUCCCACCGCUGCUA,chr3/149542218-149542137,,0,0,chr3/149542218-149542137
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,191,133271622,133271551,74.18,GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU,chr3/133271622-133271551 chr7/148419961-148420032 chr7/148724519-148724590 chr7/148796501-148796572,,0,0,chr3/133271622-133271551
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,192,133268924,133268853,74.40,GGGGGUGUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU,chr3/133268924-133268853,,0,0,chr3/133268924-133268853
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,193,126734157,126734086,29.84,CCCCUGGUGGUCUAUCGGUUAGGAUUCAGACCUCUCACCACUGCUACCCAUGCUCGAUUCCUGGUCAGGGAA,chr3/126734157-126734086,,0,0,chr3/126734157-126734086
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,194,107941850,107941779,32.31,UAGGAUGUGGUGUAUUAGGUAGCACAGAGAAUUUUGGAUUCUCAGGGGUAGGUUCGAUUCCUAUAAUUCUAC,chr3/107941850-107941779,,0,0,chr3/107941850-107941779
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,195,105200496,105200425,25.37,UUAUUAUUAUACCUGUGGUUAGGAUUCGGCGCUCUCACCGCCACGACCCGGGUUCAAUUCCCGGUCAGGGAA,chr3/105200496-105200425,,0,0,chr3/105200496-105200425
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,196,56959093,56958852,22.21,UUAUAUAUAAUAUAAUGUUUAUUAUGUUAUAUAUAAUAUAAUAAGUAUUAUAUAUAAUAGCUAUUUUAUAUAUUAUAUAAUAUAUAUUAUAUAAUAUAUAUUAUGUAACAUAUAUAAUAUAUAAUUAAAUAUAUUAUGUAUAAUAUAUAUUAUAUAUUAUAUAAUGUACAUAAUAUGUAAUAUAUUAUACAUAUAAUAUAUUAUAUUAUAUAUUAUGUAAUAUAUUUAAUAUAUUAUAUAAU,****    NEW  HIT  #33  ****,,2,0,chr3/56959093-56958852
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,197,55902333,55902165,23.43,GGCAUAGUGCCACAAUAAGUGUGUUGAAUUAGUGAAAGAAUUUCUAGAAAGCUUGAAAAGUGAUACAUUUUUACCUUUAAUCCUUACAACAGAUGUUACAAAGCAAAAUAUUCUAGUGGUUAUCAGACUGUAGAGACUGACAGCCUGGGUUCAAAUCCCAGCUGUGCCA,****    NEW  HIT  #34  ****,,2,0,chr3/55902333-55902165
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,198,45691155,45691083,68.05,GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCUAGGUUCGACUCCUGGCUGGCUCG,chr3/45691155-45691083 chr6/27290931-27291003 chr6/27746395-27746323 chr6/27289674-27289602,,0,0,chr3/45691155-45691083
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,199,39722729,39722495,22.73,UUAUAUAUAAUAGAAUAUAUUAUAUACUUAUAUAUAAUAGAAUAUAUUAUAUACUUAUAUAUAAUAGAAUAUAUUAUAUACUUAUAUAUAAUAGAAUAUAUUAUAUACUUAUAUAUAAUAGAAUAUAUUAUAUACUUAUAUAUAAUAUAAUAUAUUAUAUAUAAUAUAUUUAUAUAUAAAUAUAAUAUAUUAUAUAUAAUAUAUAUUUAUAUAUAUUUAAUAUAUAUUAUAUAUU,****    NEW  HIT  #35  ****,,2,0,chr3/39722729-39722495
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz,0,chr3,0,emb|chr3| ,1,200,17716468,17716396,36.10,GGGGGUAUAUCUCAGGGGGCAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUGAAAUCCGGGUGCUGGAU,chr3/17716468-17716396,,0,0,chr3/17716468-17716396
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,0,201,14837883,14838113,20.59,AUAUUUAUAUAUUAAUAUAUAUAAAUAUAUUACUAUGUAUAUUUAUAUAUAUUUAUAUAAAUAUAUAUAAAUAUAUGUAAAUAUAUAUAUAAAAAUAUAUAUUAAUAUAUAAAAAUAUAUAUAUAAAUAUAUAUAAAUAUAUAUAUAAAUAUAUAUAAAUAUAUAUAUAUAAAUAUAUAUAAAUAUAUAUAUAAAUAUAUAUAAAUAUAUAUAUAAAUAUAUAUAAAUAUA,****    NEW  HIT  #36  ****,,2,0,chr20/14837883-14838113
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,0,202,17850142,17850219,21.23,GGCAGUGUAGCCCAGAGGUUCAAGGGCAUUCGCUCUGGUAUCAGAAGGGUCUGGGUUCAAAUCCCUUGUGCACUGCUU,chr20/17850142-17850219,,0,0,chr20/17850142-17850219
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,0,203,30833703,30833774,20.33,GGUAAUGUAGCCUCGUGGUUAGGGGCUGCAUUCUAGAGCUAUGCUGCCCAGGUUCAAAUUCUGGUGCCACUC,chr20/30833703-30833774,,0,0,chr20/30833703-30833774
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,0,204,31709799,31710047,21.18,GAGGCUAAGGUGGGUGGAUCACCUGAGGUCAGGUGAUAUAAUAUACAACAGAUAUAAUAUGUCUAUUAUAUAUUAUAUAUAAUGUUAUAUAGAUAUCUAUAUUAUAUAUAAUAUAUUAAUAGAUAUAUUAAUAUAAUAUAUAUUAUAUAUUAUACAGAUAUCUAUAAAUAUAUUAUAUAUAAUAUAUUAUAGAUAUAUCUAUGUAUAUUAUAUCACCUGACGUCAGGUGAUCCACCCACCUUAGCCUCG,****    NEW  HIT  #37  ****,,2,0,chr20/31709799-31710047
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,0,205,41947880,41948118,22.89,AUAUAUAUAAUAAAAUAUUAAUAUAUUAUAAUAAUAUAAUUUAUUAUAUAUAAUUAUCUAUAAUAUAUUAUAAUAUAAUUAUUAUAUAUAAUAUAAUAUAUAAUUAUAUAUAAUAUAUUAUAAUAAUAUAAUAUAAUAUAUAAUUAUAUAUAAUAUAUUAUAAUAUAUUAUAUAUUAUAUUAUAUAUAUUAUAUAUAUAUAAUAUAUAUAUAAUAUAUAUAUUAUAUAUAUUAUAUAUA,****    NEW  HIT  #38  ****,,2,0,chr20/41947880-41948118
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,0,206,44636430,44636502,29.15,GCUUCUGUAAUGUAGUGGUUAUCACAUUCGCCUCACACAUGAAAGGUCACCAGUUUGAGACCGGGCCAAAACA,chr20/44636430-44636502,,0,0,chr20/44636430-44636502
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,1,207,56618924,56618850,25.89,GUUAAGAUGGCAGAGCCCAGCGAUUGCAUAAAACUUAACACUUUAUAAUCAGAGGUUCAACUCCUCUUCUUAACA,chr20/56618924-56618850,,0,0,chr20/56618924-56618850
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,1,208,51903837,51903760,23.01,GACCAAUUAGCAAGCACAGUUGGCUAGAACAUGGUGCUAAUAAGGCCACGGUCAGGGGUUCAAUUCCCUUAUGGGCUG,chr20/51903837-51903760,,0,0,chr20/51903837-51903760
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,1,209,49637845,49637764,40.69,GGUAGGGUGGCCGAGCGGUCUAAGGCACUGUAUUAAGACUCCAGUCUCUUCAGAGGCAUGGGUUUGAAUCCCACUGCUGCCA,chr20/49637845-49637764,,0,0,chr20/49637845-49637764
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div1_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz,0,chr20,0,emb|chr20| ,1,210,13965541,13965470,27.05,UCCCUGCUUGUCUAGUGGUUAGAAUUCAGCACUCUCACUGCCACAGCCCAGGUUCAAUUCCCUGUCAGAGAA,chr20/13965541-13965470,,0,0,chr20/13965541-13965470
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,0,0,156960029,156960094,27.61,GGUAAAGUGGCUGAAUAAGCAUUAGACUGUAAAUCUAAAGACAGAGGUCAAGGCCUCUUUUUAGCA,****    NEW  HIT  #39  ****,,2,0,chr4/156960029-156960094
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,0,1,156961515,156961586,20.23,UAGGACGUGGUGUGAUAGGUAGCACAGAGAAUUUUGGAUUCUCAGGGGUAGGUUAAAUUCCUAUAGUACUAG,chr4/156961515-156961586,,0,0,chr4/156961515-156961586
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,1,2,177052203,177051965,24.41,AAAUAUAUAUUUAAAUAUAUAAAUAUAUAUUUAUAUAUAUAAAUAUAUAUUUAUAUUUAUAUAUAUAAAUAUAUAUUUAUAUAUAUAUAUAAAUAUAUAUUUAAAUAUAUAAAUAUAUAUUUAUAUUUAUAUAUAAAUAUAUAUUUAAAUAUAUAUUUAAUAAAUUAAAAAUAUAAAUAAAUAUUUAUAUUUAUAUAUUUAAAUAUAUAUUUAUAUAUAUUUAAAUAUAUAUUUAUUUA,****    NEW  HIT  #40  ****,,2,0,chr4/177052203-177051965
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,1,3,156962679,156962605,48.67,GUUAAGAUGGCAGAGCCUGGUAAUUGCAUAAAACUUAAAAUUUUAUAAUCAGAGGUUCAACUCCUCUUCUUAACA,chr4/156962679-156962605,,0,0,chr4/156962679-156962605
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,1,4,124888897,124888826,77.69,GGGGGUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU,chr17/37398861-37398932 chr17/37685778-37685707 chr17/37685021-37684950 chr4/124888897-124888826,,0,0,chr4/124888897-124888826
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,1,5,111133493,111133247,20.04,AUUUAUAUAAUAAAUAUAUUAUAAAUAUUUAUUAUAAAUAUUUAUUAAUAUAAAUAUAUAUAUAAAUAUUUAUUAUAUAAUAAAUAUAUUAUAAAUAUUUAUUUAUAUAAUAAAUAUAUAUUAUAAAUAUUUAUAUAAUAAAUAUAUAUUAUAAAUAUUUAUUAUAUAAUAAAUAUAUAUUAUAAAUAUUUAUAUAAUAAAUAUAUAUUAUAAAUAUUUAUUAUAUAAUAAAUAUAUAUUAUAAAUA,****    NEW  HIT  #41  ****,,2,0,chr4/111133493-111133247
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,1,6,95293004,95292773,21.81,UUAUAUAUAAAUAAUGGUAGUUAUAUAUAUUUAUAUAUUAUUAUAUAUAAUUGUAUAUAAUUAUAUAUAAAGUAUAUAAAUUAUAUAUAUAAUUUAUAUAAAAAUAUAUAUAAAUUAUAUAUAUAAUUAUAUAUAUUUAUAUAUAAAUAUAUAUAAUUAUAUAUAAAUUAUAUAUAAAUAUAUAAAUUAUAUAUAAAUACAUAUAUAAAUUAUAUCUAAAAAUAUAUAUAAA,****    NEW  HIT  #42  ****,,2,0,chr4/95293004-95292773
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,1,7,43368555,43368316,21.01,AUAUAUAUGAUAGAAUAUAUUAUGUAUUAUAUUAUAUUAUAGAAAUAAUAUUAUAUAUUAUGUAUUAUGUAUAAUAUAUAAAUAAUAUAUAGUAUAAUAUAUAAUAUAUGUGAUAUAAUAUAUAUUAUAUAUUAUAUAUAAUAUAUAUAAAUAAUAUAUAUUAUAUAUUAUAUAUAAUAUAUAUAAAUAAUAUAUAAUAUAUAUUAUAUUAUAUUAUAUGUUAAAUAUAUAUUAUAUAUA,****    NEW  HIT  #43  ****,,2,0,chr4/43368555-43368316
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,1,8,40824357,40824285,31.54,GACCAUGUGGCCUAAGGGAAAAGACAUCUCACUUUGGGUCAGAAGAUUGAGGGUUCAAGUCCUUUCAUGGUCA,chr4/40824357-40824285,,0,0,chr4/40824357-40824285
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz,0,chr4,0,emb|chr4| ,1,9,7390451,7390380,21.70,GGCAGCCUGGCUUAGUGGAAAGGGAAUAGGCUUUAGAGCCAGACUGCCUGGGUUUGAAUCCCAGCCCCGCCA,chr4/7390451-7390380,,0,0,chr4/7390451-7390380
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,10,152017106,152017281,29.45,GGCUGUAUAGCUCAGUGGUAGAGCAUUUGACUACAGAAUCCUAUACUCAGGGGAAGGAGAACUGGGGGUUUCUCAGUGGGUCAAAGGACUUGUAGUGGUAAAUCAAAAGCAACUCUAUAAGCUAUGUAACAAACUUUAAAGUCAUAUGUAGCUGGGUUCAAAUCCUGUUUCUGCCA,chr5/152017106-152017281,,0,0,chr5/152017106-152017281
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,11,168277154,168277222,27.75,GGCAGCAUAGCAGAGUGGUUCAGGUUACAGGUUCUAGAUGUAAACUGAGUUCAAAUCCCAGUUCUGCCA,****    NEW  HIT  #44  ****,,2,0,chr5/168277154-168277222
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,12,180633732,180633804,87.37,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr1/158586354-158586282 chr5/180633732-180633804 chr5/180710312-180710384 chr5/180759129-180759057 chr5/180638987-180638915 chr6/26646261-26646333,,0,0,chr5/180633732-180633804
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,13,180638502,180638583,71.93,GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA,chr5/180638502-180638583 chr5/180710787-180710706 chr5/180634217-180634136,,0,0,chr5/180638502-180638583
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,14,180700816,180700888,86.77,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr3/170810931-170811003 chr5/180700816-180700888 chr5/180706272-180706344 chr5/180755004-180754932 chr6/27829230-27829158,,0,0,chr5/180700816-180700888
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,15,180706272,180706344,86.77,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr3/170810931-170811003 chr5/180700816-180700888 chr5/180706272-180706344 chr5/180755004-180754932 chr6/27829230-27829158,,0,0,chr5/180706272-180706344
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,16,180710312,180710384,87.37,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr1/158586354-158586282 chr5/180633732-180633804 chr5/180710312-180710384 chr5/180759129-180759057 chr5/180638987-180638915 chr6/26646261-26646333,,0,0,chr5/180710312-180710384
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,17,180724363,180724444,69.82,GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGGGGCGUGGGUUCGAAUCCCACCGCUGCCA,chr14/19068419-19068500 chr16/22275014-22275095 chr5/180724363-180724444 chr6/29019472-29019391,,0,0,chr5/180724363-180724444
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,18,180743530,180743601,74.43,GGGGAUGUAGCUCAGUGGUAGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA,chr12/123759471-123759400 chr5/180743530-180743601,,0,0,chr5/180743530-180743601
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,0,19,180744417,180744489,80.45,GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG,chr16/3225977-3226049 chr1/143144281-143144209 chr5/180744417-180744489 chr5/180758713-180758641 chr6/26664753-26664825,,0,0,chr5/180744417-180744489
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,20,180759129,180759057,87.37,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr1/158586354-158586282 chr5/180633732-180633804 chr5/180710312-180710384 chr5/180759129-180759057 chr5/180638987-180638915 chr6/26646261-26646333,,0,0,chr5/180759129-180759057
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,21,180758713,180758641,80.45,GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG,chr16/3225977-3226049 chr1/143144281-143144209 chr5/180744417-180744489 chr5/180758713-180758641 chr6/26664753-26664825,,0,0,chr5/180758713-180758641
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,22,180755004,180754932,86.77,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr3/170810931-170811003 chr5/180700816-180700888 chr5/180706272-180706344 chr5/180755004-180754932 chr6/27829230-27829158,,0,0,chr5/180755004-180754932
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,23,180728420,180728349,75.62,GGCUCCAUAGCUCAGGGGUUAGAGCACUGGUCUUGUAAACCAGGGUCGCGAGUUCAAAUCUCGCUGGGGCCU,chr5/180728420-180728349,,0,0,chr5/180728420-180728349
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,24,180725587,180725516,76.13,GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC,chr14/19142303-19142374 chr16/3209208-3209279 chr16/3238379-3238450 chr16/3234489-3234418 chr5/180725587-180725516,,0,0,chr5/180725587-180725516
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,25,180725150,180725078,84.68,GUUUCCGUAGUGUAGUGGUCAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr5/180725150-180725078,,0,0,chr5/180725150-180725078
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,26,180710787,180710706,71.93,GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA,chr5/180638502-180638583 chr5/180710787-180710706 chr5/180634217-180634136,,0,0,chr5/180710787-180710706
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,27,180701307,180701226,25.65,GAUAGCAAGGCCGAGCGGUCUAAGGCUCCGGAUUAAGGCGCCGGUGUCUUCGGAGGCAUGGGUUCGAAUUCCACCUCUGCCA,chr5/180701307-180701226,,0,0,chr5/180701307-180701226
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,28,180638987,180638915,87.37,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,chr1/158586354-158586282 chr5/180633732-180633804 chr5/180710312-180710384 chr5/180759129-180759057 chr5/180638987-180638915 chr6/26646261-26646333,,0,0,chr5/180638987-180638915
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,29,180634217,180634136,71.93,GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA,chr5/180638502-180638583 chr5/180710787-180710706 chr5/180634217-180634136,,0,0,chr5/180634217-180634136
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,30,167797610,167797539,29.64,GCCCAACUGGUUCAGUCGGUAGAGAAUGAGACUCUUAAUCUCAGGUCAUAGAUUCAUGUCACAUGUUGGGUG,****    NEW  HIT  #45  ****,,2,0,chr5/167797610-167797539
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,31,159373013,159372936,20.42,GGCAGUGGAGUUUAGUGGUUAAGGACCUGCUCAGACAUCACAGGUAGGUAGAUCUGGGUUCAAACCCUAGCCCUGGCA,chr5/159373013-159372936,,0,0,chr5/159373013-159372936
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,32,151276655,151276584,25.73,GGUAGUGUAGUCUACUGGUUAAACGCUUGGGCUCUGACAUUAACGUCCUGGGUUCAAAUCCCAGCUUUGUCA,chr5/151276655-151276584,,0,0,chr5/151276655-151276584
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,33,141802560,141802489,54.85,UCCUCAUCAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACUGGGGUUCGAUUCCCUGAGGAGGAG,chr5/141802560-141802489,,0,0,chr5/141802560-141802489
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,34,77402921,77402849,24.01,AGCUGUAUAUUAUAGUGGAAUAAAUGUGGACUUUGAAGUUAGAUACACCUGGGUUCAAAUCCCAGUGCUGUCA,chr5/77402921-77402849,,0,0,chr5/77402921-77402849
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz,0,chr5,0,emb|chr5| ,1,35,26244112,26244040,53.31,GCCCGACUACCUCAGUCGGUGGAGCAUGGGACUCUUCAUCCCAGGGUUGUGGGUUCGAGCCCCACAUUGGGCA,chr5/26244112-26244040,,0,0,chr5/26244112-26244040
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz,0,chr6,0,emb|chr6| ,0,36,18944381,18944452,73.62,GGUUCCAUGGUGUAAUGGUUAGCACUCUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUGGAACCU,chr15/63877289-63877218 chr17/8223636-8223707 chr6/18944381-18944452 chr6/27595287-27595358 chr6/29017441-29017370,,0,0,chr6/18944381-18944452
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz,0,chr6,0,emb|chr6| ,0,37,26394733,26394804,68.96,AGCAGAGUGGCGCAGCGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUA,chr17/81131481-81131410 chr1/150860518-150860589 chr6/26394733-26394804 chr6/27978321-27978250 chr6/27668650-27668579 chr6/27408814-27408743 chr6/26438579-26438508 chr6/26421402-26421331,,0,0,chr6/26394733-26394804
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz,0,chr6,0,emb|chr6| ,0,38,26407884,26407956,69.53,GACCACGUGGCCUAAUGGAUAAGGCGUCUGACUUCGGAUCAGAAGAUUGAGGGUUCGAAUCCCUUCGUGGUUA,chr6/26407884-26407956,,0,0,chr6/26407884-26407956
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz,0,chr6,0,emb|chr6| ,0,39,26431025,26431097,72.31,GACCACGUGGCCUAAUGGAUAAGGCGUCUGACUUCGGAUCAGAAGAUUGAGGGUUCGAAUCCCUCCGUGGUUA,chr6/26431025-26431097,,0,0,chr6/26431025-26431097
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz,0,chr6,0,emb|chr6| ,0,40,26435796,26435877,88.00,GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUAGAAAUCCAUUGGGGUCUCCCCGCGCAGGUUCGAAUCCUGCCGACUACG,chr17/8330575-8330494 chr6/26435796-26435877 chr6/27554570-27554651 chr6/27571572-27571653 chr6/27578797-27578878 chr8/96238549-96238468,,0,0,chr6/26435796-26435877
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz,0,chr6,0,emb|chr6| ,0,41,26436347,26436419,72.35,GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCG,chr14/21389038-21389110 chr6/26436347-26436419 chr6/26645705-26645777,,0,0,chr6/26436347-26436419
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz,0,chr6,0,emb|chr6| ,0,42,26629415,26629497,77.20,GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUCCUGACA,chr1/158628115-158628197 chr1/158687515-158687597 chr1/158694896-158694978 chr1/158702306-158702388 chr1/158709687-158709769 chr1/158768988-158768906 chr6/26629415-26629497,,0,0,chr6/26629415-26629497
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz,0,chr6,0,emb|chr6| ,0,43,26645705,26645777,72.35,GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCG,chr14/21389038-21389110 chr6/26436347-26436419 chr6/26645705-26645777,,0,0,chr6/26645705-26645777
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm @/projects/bio6/zasha/seqs/genomes/human/div2_4.list 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz,0,chr6,0,emb