Params: ./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta 1 specfile data/TRNA2-euk.filterspec Build: release Host: gattaca.cs.washington.edu pid: 18450 ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----specfile: 2struct-str data/tRNAscan/tRNAscan-TRNA2-euk-type1-Ecoli.bin 1/remember-nuc,15,r-A-C-G-U-_,34,r-AG-C_-U,32,r-AU_-CG,51,l-ACGU-_,50,r-ACGU-_,67,l-ACU_-G,65,r-AG-U_-C 2struct-str data/tRNAscan/tRNAscan-TRNA2-euk-type1-Ecoli.bin 1/remember-nuc,16,l-AG_-CU,15,r-A-C-G-U-_,14,r-CU_-A-G,34,r-A_-C-G-U,32,r-A_-C-G-U,31,l-AG_-CU,54,l-ACGU-_,51,l-ACGU-_,50,r-ACGU-_,49,l-ACGU-_,48,r-ACGU-_,67,l-ACU_-G,66,r-AGU_-C,65,l-ACU-G_,64,r-ACU-G_,63,r-AG_-CU 2struct-str data/tRNAscan/tRNAscan-TRNA2-euk-type1-Ecoli.bin 1/sub,63,48/sub,48,32/sub,13,63 2struct-str data/tRNAscan/tRNAscan-TRNA2-euk-type1-Ecoli.bin 1/sub,63,48/sub,30,500/sub,13,63 Exploded HMM has 1149 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-euk.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,15,r-A-C-G-U-_/remember-nuc,34,r-AG-C_-U/remember-nuc,32,r-AU_-CG/remember-nuc,51,l-ACGU-_/remember-nuc,50,r-ACGU-_/remember-nuc,67,l-ACU_-G/remember-nuc,65,r-AG-U_-C Exploded HMM has 5542 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-euk.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,16,l-AG_-CU/remember-nuc,15,r-A-C-G-U-_/remember-nuc,14,r-CU_-A-G/remember-nuc,34,r-A_-C-G-U/remember-nuc,32,r-A_-C-G-U/remember-nuc,31,l-AG_-CU/remember-nuc,54,l-ACGU-_/remember-nuc,51,l-ACGU-_/remember-nuc,50,r-ACGU-_/remember-nuc,49,l-ACGU-_/remember-nuc,48,r-ACGU-_/remember-nuc,67,l-ACU_-G/remember-nuc,66,r-AGU_-C/remember-nuc,65,l-ACU-G_/remember-nuc,64,r-ACU-G_/remember-nuc,63,r-AG_-CU ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-euk.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,63,48/sub,48,32/sub,13,63 ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-euk.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,63,48/sub,30,500/sub,13,63 ----cmFile: data/tRNAscan/tRNAscan-TRNA2-euk.cm (global) ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCG hit 0 : 1281033 1281105 (fwd) 73.10 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+:CC:GUGGC::A U GG +A::GCG:::GACU +AUC:::AG 1281033 GGUCCUGUGGCGCAAU-GGAuAACGCGUCUGACUACGGAUCAGAAG-------------- 1281077 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + CC:GGUUCGA UCC:GGC:GG:+C+ 1281078 ----AuUCCAGGUUCGACUCCUGGCAGGAUCG 1281105 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCG hit 1 : 1300000 1300072 (fwd) 73.10 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+:CC:GUGGC::A U GG +A::GCG:::GACU +AUC:::AG 1300000 GGUCCUGUGGCGCAAU-GGAuAACGCGUCUGACUACGGAUCAGAAG-------------- 1300044 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + CC:GGUUCGA UCC:GGC:GG:+C+ 1300045 ----AuUCCAGGUUCGACUCCUGGCAGGAUCG 1300072 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCUCCGUGGCGCAAUUGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGUCCACCCGGGGGCG hit 2 : 1300984 1301057 (fwd) 86.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CCGUGGC:CA UUGGU+AG:GCG:U:G:CU U+AA:C:A:AG 1300984 GCCUCCGUGGCGCAAUUGGUuAGCGCGUUCGGCUGUUAACCGAAAG-------------- 1301029 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :::GGUUCGA UCC:::CGG:GGC+ 1301030 ----GuUGGUGGUUCGAGUCCACCCGGGGGCG 1301057 ----endhit ----hitSequence: GCCUCCGUGGCGCAAUUGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGUCCACCCGGGGGCG hit 3 : 1300662 1300735 (fwd) 86.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CCGUGGC:CA UUGGU+AG:GCG:U:G:CU U+AA:C:A:AG 1300662 GCCUCCGUGGCGCAAUUGGUuAGCGCGUUCGGCUGUUAACCGAAAG-------------- 1300707 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :::GGUUCGA UCC:::CGG:GGC+ 1300708 ----GuUGGUGGUUCGAGUCCACCCGGGGGCG 1300735 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCA hit 4 : 1304616 1304689 (fwd) 82.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:CCC::U+GC:CAGUUGGU+AG:GCG::G::CU +AA::C::AG 1304616 GGCCCAUUAGCUCAGUUGGUuAGAGCGUCGUGCUAAUAACGCGAAG-------------- 1304661 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA+ CCC :::GGG:CA 1304662 ----GuCGCGGGUUCGAUCCCCUCAUGGGCCA 1304689 ----endhit ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 5 : 1304449 1304521 (fwd) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 1304449 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 1304493 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 1304494 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 1304521 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCG hit 6 : 1308072 1308144 (fwd) 73.10 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+:CC:GUGGC::A U GG +A::GCG:::GACU +AUC:::AG 1308072 GGUCCUGUGGCGCAAU-GGAuAACGCGUCUGACUACGGAUCAGAAG-------------- 1308116 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + CC:GGUUCGA UCC:GGC:GG:+C+ 1308117 ----AuUCCAGGUUCGACUCCUGGCAGGAUCG 1308144 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCG hit 7 : 1310152 1310224 (fwd) 73.10 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+:CC:GUGGC::A U GG +A::GCG:::GACU +AUC:::AG 1310152 GGUCCUGUGGCGCAAU-GGAuAACGCGUCUGACUACGGAUCAGAAG-------------- 1310196 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + CC:GGUUCGA UCC:GGC:GG:+C+ 1310197 ----AuUCCAGGUUCGACUCCUGGCAGGAUCG 1310224 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCUCCGUGGCGCAAUUGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGUCCACCCGGGGGCG hit 8 : 1328837 1328910 (fwd) 86.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CCGUGGC:CA UUGGU+AG:GCG:U:G:CU U+AA:C:A:AG 1328837 GCCUCCGUGGCGCAAUUGGUuAGCGCGUUCGGCUGUUAACCGAAAG-------------- 1328882 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :::GGUUCGA UCC:::CGG:GGC+ 1328883 ----GuUGGUGGUUCGAGUCCACCCGGGGGCG 1328910 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCA hit 9 : 3219202 3219275 (fwd) 82.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:CCC::U+GC:CAGUUGGU+AG:GCG::G::CU +AA::C::AG 3219202 GGCCCAUUAGCUCAGUUGGUuAGAGCGUCGUGCUAAUAACGCGAAG-------------- 3219247 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA+ CCC :::GGG:CA 3219248 ----GuCGCGGGUUCGAUCCCCUCAUGGGCCA 3219275 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACA hit 10 : 3743962 3744044 (fwd) 77.86 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G:C::+:UGGCC:AGU GGU +A:GGCGCUG:: UC + ::CAG+ :::C U+U 3743962 GUCAGGAUGGCCGAGU-GGUcuAAGGCGCUGCGUUCAGGUCGCAGU-CUAC---UCU--- 3744013 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 G:::GC::GGGUUCGAAUCCC:::+::G:CA 3744014 -GUAGGCGUGGGUUCGAAUCCCACUUCUGACA 3744044 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: AGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACUCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUA hit 11 : 4721857 4721928 (fwd) 66.22 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 ::C:::GUG:C:CAGU GG AG:G:GCUG :C C +AA: CAGAG 4721857 AGCAGAGUGGCGCAGU-GGAAGCGUGCUGGGCCCAUAACUCAGAG--------------- 4721900 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CC :GG UCGAA CC: GC:::G::A 4721901 ---GuCCGAGGAUCGAAACCUUGCUCUGCUA 4721928 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCUCUUUAGCUCAGUGGCAGAGCACUGGUCUUGUAAACCAGGGGUCGUGAGUUCAAUCCUCACAGGAGGCA hit 12 : 6459063 6459134 (fwd) 76.05 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C::U+GC:CAGU GG AG:GC CUGG:CU +AA:CCAG G 6459063 GCCUCUUUAGCUCAGU-GGCAGAGCACUGGUCUUGUAAACCAGGG--------------- 6459106 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::G:GUUC A+ C:C::::G:GGCA 6459107 ---GuCGUGAGUUCAAUCCUCACAGGAGGCA 6459134 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCUCUUUAGCUCAGUGGCAGAGCACUGGUCUUGUAAACCAGGGGUCGUGAGUUCAAUCCUCACAGGAGGCA hit 13 : 6469409 6469480 (fwd) 76.05 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C::U+GC:CAGU GG AG:GC CUGG:CU +AA:CCAG G 6469409 GCCUCUUUAGCUCAGU-GGCAGAGCACUGGUCUUGUAAACCAGGG--------------- 6469452 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::G:GUUC A+ C:C::::G:GGCA 6469453 ---GuCGUGAGUUCAAUCCUCACAGGAGGCA 6469480 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCUCGGUGGCGCAGUUGGCAGCGCGUAAGUCUCAUAAUCUUAAGGUCGUGAGUUCGAGCCUCACCCGGGGCA hit 14 : 6717362 6717434 (fwd) 79.41 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C:GUGGC:CAGUUGG AG:GCG:::G CUC +AA C:::AG 6717362 GCCUCGGUGGCGCAGUUGGCAGCGCGUAAGUCUCAUAAUCUUAAG--------------- 6717406 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::G:GUUCGA C:C::C:G:GGCA 6717407 ---GuCGUGAGUUCGAGCCUCACCCGGGGCA 6717434 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGGUUACCACACCCAGGUUCGAAUCCUGGUCACGGCA hit 15 : 7401446 7401517 (fwd) 37.56 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC::::U G:C:AGU GGU+A:G:C C +A G+ G::: UU+ 7401446 GCCGUGAUCGUCUAGU-GGUuAGGACCC--------CAC----GUUGUGG---GUUA--- 7401486 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 :::C CCC:GGUUCGAAUCC:GG::::GGCA 7401487 CCACACCCAGGUUCGAAUCCUGGUCACGGCA 7401517 ----endhit ----hitSequence: GCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCA hit 16 : 7401131 7401202 (fwd) 67.13 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC::::U G:C:AGU GGU+A:G:C C:::: U U + ::::G+ 7401131 GCCGUGAUCGUCUAGU-GGUuAGGACCCCACGUUGUGGCCGUGGUA-------------- 7401175 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCC:GGUUCGAAUCC:GG::::GGCA 7401176 ----ACCCAGGUUCGAAUCCUGGUCACGGCA 7401202 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCA hit 17 : 8496807 8496880 (fwd) 82.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:CCC::U+GC:CAGUUGGU+AG:GCG::G::CU +AA::C::AG 8496807 GGCCCAUUAGCUCAGUUGGUuAGAGCGUCGUGCUAAUAACGCGAAG-------------- 8496852 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA+ CCC :::GGG:CA 8496853 ----GuCGCGGGUUCGAUCCCCUCAUGGGCCA 8496880 ----endhit ----hitSequence: GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCA hit 18 : 8496491 8496564 (fwd) 82.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:CCC::U+GC:CAGUUGGU+AG:GCG::G::CU +AA::C::AG 8496491 GGCCCAUUAGCUCAGUUGGUuAGAGCGUCGUGCUAAUAACGCGAAG-------------- 8496536 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA+ CCC :::GGG:CA 8496537 ----GuCGCGGGUUCGAUCCCCUCAUGGGCCA 8496564 ----endhit ----hitSequence: GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCA hit 19 : 8495999 8496072 (fwd) 82.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:CCC::U+GC:CAGUUGGU+AG:GCG::G::CU +AA::C::AG 8495999 GGCCCAUUAGCUCAGUUGGUuAGAGCGUCGUGCUAAUAACGCGAAG-------------- 8496044 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA+ CCC :::GGG:CA 8496045 ----GuCGCGGGUUCGAUCCCCUCAUGGGCCA 8496072 ----endhit ----hitSequence: GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCA hit 20 : 8495698 8495771 (fwd) 82.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:CCC::U+GC:CAGUUGGU+AG:GCG::G::CU +AA::C::AG 8495698 GGCCCAUUAGCUCAGUUGGUuAGAGCGUCGUGCUAAUAACGCGAAG-------------- 8495743 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA+ CCC :::GGG:CA 8495744 ----GuCGCGGGUUCGAUCCCCUCAUGGGCCA 8495771 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GUCAGGAUGGCCGAGCGGUCUAAGGCGCCAGACUCAAGAUUGAAAAUCUUACUUUCUGAACGAAAGUGUUUGUGAAUGAGCGUUCUGGUCCUCUUUGAGGGCGUGGGUUCGAAUCCCACUUCUGACA hit 21 : 8497382 8497508 (fwd) 72.66 bits (((((((,,<<<<_______.._>>>>,<<<<<______..................... 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaA..................... 37 G:C::+:UGGCC:AG GGU +A:GGCGC::GACUC A++++ +++++ +++ +++ + + 8497382 GUCAGGAUGGCCGAGC-GGUcuAAGGCGCCAGACUCAAGauugaaaaucuuacuuucuga 8497440 ......................._>>>>>,,<<<<<<<____>>>>>>>,,<<<<<____ 38 .......................AuCcagAGggccugcUUUggggggccGCcCgGGUUCG 74 + +++ + +++ + +++ + UC::G+ :::C UUU G:::GC::GGGUUCG 8497441 acgaaaguguuugugaaugagcgUUCUGGU-CCUC---UUU----GAGGGCGUGGGUUCG 8497492 ___>>>>>))))))): 75 AaUCCcGgcgggGgCa 90 AAUCCC:::+::G:CA 8497493 AAUCCCACUUCUGACA 8497508 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCA hit 22 : 8502580 8502653 (fwd) 82.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:CCC::U+GC:CAGUUGGU+AG:GCG::G::CU +AA::C::AG 8502580 GGCCCAUUAGCUCAGUUGGUuAGAGCGUCGUGCUAAUAACGCGAAG-------------- 8502625 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA+ CCC :::GGG:CA 8502626 ----GuCGCGGGUUCGAUCCCCUCAUGGGCCA 8502653 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAA hit 23 : 11283363 11283434 (fwd) 79.23 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 11283363 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 11283407 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG:::GGG:A 11283408 ----GCCCGGGUUCGAUUCCCGGUAUGGGAA 11283434 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: UCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAA hit 24 : 11283777 11283848 (fwd) 80.25 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::UG::C:AGU GG +A:G:: :::G:CU U+A :C:::AG 11283777 UCCCAUAUGGUCUAGU-GGCuAGGAUAUCUGGCUUUCACCCAGAAG-------------- 11283821 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG:::GGG:A 11283822 ----GCCCGGGUUCGAUUCCCGGUAUGGGAA 11283848 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 25 : 12031733 12031803 (fwd) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 12031733 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 12031776 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 12031777 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 12031803 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 26 : 12209025 12209106 (fwd) 71.46 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G: ::CGUGGCC:AG GGU +A:GGCGCUGG: U + :CCAG+ ::CC U+ 12209025 GGUAGCGUGGCCGAGC-GGUcuAAGGCGCUGGUUUAAGGCACCAGU-CUCC---UC---- 12209075 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GG::GC::GGGUUCGAAUCCC::CG:: :CA 12209076 -GGAGGCGUGGGUUCGAAUCCCACCGCUGCCA 12209106 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGGGAUGUAGCUCAGUGGUAGAGCGCUCGCUUUGCAUGUGAGAGGCCCCGGGUUCAAUCCCCGGCAUCUCCA hit 27 : 12455940 12456011 (fwd) 74.16 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: :::GU+GC:CAGU GGUAG:GCGCU: : U +A : :AGAG 12455940 GGGGAUGUAGCUCAGU-GGUAGAGCGCUCGCUUUGCAUGUGAGAG--------------- 12455983 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G CCCGGGUUC A+ CCCGGC::: :CA 12455984 ---GcCCCGGGUUCAAUCCCCGGCAUCUCCA 12456011 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCCGGUUCAAUCCCGGGUUUCGGCA hit 28 : 12668496 12668568 (fwd) 82.96 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC::::U+GC:CAGUUGG AG:GCG:U:GACU A+AUC:A:AG 12668496 GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAG--------------- 12668540 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCC:GGUUC A+ CC:GG::::GGCA 12668541 ---GuCCCCGGUUCAAUCCCGGGUUUCGGCA 12668568 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GACUCCGUGGCGCAACGGUAGCGCGUCCGACUCCAGAUCGGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCA hit 29 : 13703277 13703348 (fwd) 75.59 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:CCGUGGC:CA GGUAG:GCG:::GACUC A+AUC:::AG 13703277 GACUCCGUGGCGCAAC-GGUAGCGCGUCCGACUCCAGAUCGGAAG--------------- 13703320 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ CG:GUUC AAUC:CG CGG:G:CA 13703321 ---GuUGCGUGUUCAAAUCACGUCGGGGUCA 13703348 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 30 : 13833851 13833932 (fwd) 71.46 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G: ::CGUGGCC:AG GGU +A:GGCGCUGG: U + :CCAG+ ::CC U+ 13833851 GGUAGCGUGGCCGAGC-GGUcuAAGGCGCUGGUUUAAGGCACCAGU-CUCC---UC---- 13833901 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GG::GC::GGGUUCGAAUCCC::CG:: :CA 13833902 -GGAGGCGUGGGUUCGAAUCCCACCGCUGCCA 13833932 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACA hit 31 : 14478991 14479063 (fwd) 79.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::CCGUGG:::AG GGU+A:::C :::G:CU +A :C:::AG 14478991 GUUUCCGUGGUGUAGC-GGUuAUCACAUCUGCCUAACACGCAGAAG-------------- 14479035 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G CCC:GGUUCGA+ CC:GGCGG:::CA 14479036 ----GcCCCCGGUUCGAUCCCGGGCGGAAACA 14479063 ----endhit ----hitSequence: GUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACA hit 32 : 14478565 14478637 (fwd) 79.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::CCGUGG:::AG GGU+A:::C :::G:CU +A :C:::AG 14478565 GUUUCCGUGGUGUAGC-GGUuAUCACAUCUGCCUAACACGCAGAAG-------------- 14478609 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G CCC:GGUUCGA+ CC:GGCGG:::CA 14478610 ----GcCCCCGGUUCGAUCCCGGGCGGAAACA 14478637 ----endhit ----hitSequence: GCAGUCGUGGCCGAGUGGUUAAGGCGUCUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCG hit 33 : 14478318 14478399 (fwd) 86.40 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUGGCC:AGU GGU+A:GGCG:::GACUC AAAUC:::+ ::CC U+U 14478318 GCAGUCGUGGCCGAGU-GGUuAAGGCGUCUGACUCGAAAUCAGAU-UCCC---UCU---- 14478368 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GG::GC:::GGUUCGAAUCC:::CG:::GC+ 14478369 GGGAGCGUAGGUUCGAAUCCUACCGGCUGCG 14478399 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCA hit 34 : 14779285 14779358 (fwd) 82.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:CCC::U+GC:CAGUUGGU+AG:GCG::G::CU +AA::C::AG 14779285 GGCCCAUUAGCUCAGUUGGUuAGAGCGUCGUGCUAAUAACGCGAAG-------------- 14779330 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA+ CCC :::GGG:CA 14779331 ----GuCGCGGGUUCGAUCCCCUCAUGGGCCA 14779358 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: AGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUA hit 35 : 14789625 14789696 (fwd) 70.80 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 ::C:::GUG:C:CAGU GG AG:G:GCUGG:C C +AA:CCAGAG 14789625 AGCAGAGUGGCGCAGU-GGAAGCGUGCUGGGCCCAUAACCCAGAG--------------- 14789668 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CC :GG UCGAA CC: GC:::G::A 14789669 ---GuCCGAGGAUCGAAACCUUGCUCUGCUA 14789696 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGCUACCCGGCUCUCACCCGGGAGGCCCAGGUUCAGUUCCCUGUAUAGGAA hit 36 : 14793002 14793073 (fwd) 45.41 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC :::U : C:AGU GGU+A:G : C::G:CUCU+A :C::GAG 14793002 UCCCAUAUUGUCUAGU-GGUuAGGCUACCCGGCUCUCACCCGGGAG-------------- 14793046 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCC GGUUC +UCC G::: GG:A 14793047 ----GCCCAGGUUCAGUUCCCUGUAUAGGAA 14793073 ----endhit ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUACCCGGCUCUCACCCGGGAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 37 : 14792607 14792678 (fwd) 77.88 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: C::G:CUCU+A :C::GAG 14792607 UCCCAUAUUGUCUAGU-GGUuAGGAUACCCGGCUCUCACCCGGGAG-------------- 14792651 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 14792652 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 14792678 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 38 : 14866304 14866376 (fwd) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 14866304 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 14866348 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 14866349 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 14866376 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCCCAGUGGCCUAAUGGAUAAGGCAUCGGCCUCCUAAGCCGGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUA hit 39 : 15064531 15064603 (fwd) 67.47 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 CCCC:GUGGCC A U GG +A GGC :GG:CUC +AA:CC: G 15064531 GCCCCAGUGGCCUAAU-GGAuAAGGCAUCGGCCUCCUAAGCCGGGG-------------- 15064575 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + :GGGUUCGA UCCC: C:GGGG A 15064576 ----AuUGUGGGUUCGAGUCCCAUCUGGGGUA 15064603 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 40 : 15293193 15293263 (fwd) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 15293193 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 15293236 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 15293237 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 15293263 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 41 : 15296509 15296579 (fwd) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 15296509 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 15296552 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 15296553 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 15296579 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GACUCCGUGGCGCAACGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCA hit 42 : 15721603 15721674 (fwd) 75.39 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:CCGUGGC:CA GGUAG:GCG:::GACUC A+AUC:::AG 15721603 GACUCCGUGGCGCAAC-GGUAGCGCGUCUGACUCCAGAUCAGAAG--------------- 15721646 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ CG:GUUC AAUC:CG CGG:G:CA 15721647 ---GuUGCGUGUUCAAAUCACGUCGGGGUCA 15721674 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GACUCCGUGGCGCAACGGUAGCGCGUCCGACUCCAGAUCGGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCA hit 43 : 16205070 16205141 (fwd) 75.59 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:CCGUGGC:CA GGUAG:GCG:::GACUC A+AUC:::AG 16205070 GACUCCGUGGCGCAAC-GGUAGCGCGUCCGACUCCAGAUCGGAAG--------------- 16205113 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ CG:GUUC AAUC:CG CGG:G:CA 16205114 ---GuUGCGUGUUCAAAUCACGUCGGGGUCA 16205141 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GACUCCGUGGCGCAACGGUAGCGCGUCCGACUCCAGAUCGGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCA hit 44 : 16224828 16224899 (fwd) 75.59 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:CCGUGGC:CA GGUAG:GCG:::GACUC A+AUC:::AG 16224828 GACUCCGUGGCGCAAC-GGUAGCGCGUCCGACUCCAGAUCGGAAG--------------- 16224871 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ CG:GUUC AAUC:CG CGG:G:CA 16224872 ---GuUGCGUGUUCAAAUCACGUCGGGGUCA 16224899 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 45 : 16226400 16226470 (fwd) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 16226400 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 16226443 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 16226444 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 16226470 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GUUGCGGUGUCCGAGUGGUUAAGGAGAUGGACUUGAAAUCCAUUGGGUUCUACCCGCGCAGGUUCGAAUCCUGUCCGCAGCG hit 46 : 18116149 18116230 (fwd) 76.80 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G ::C:GUG:CC:AGU GGU+A:GG:G:UGGACU AAAUCCA:+ GG:: U+U 18116149 GUUGCGGUGUCCGAGU-GGUuAAGGAGAUGGACUUGAAAUCCAUU-GGGU---UCU---- 18116199 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 ::CCGC C:GGUUCGAAUCC:G C:G:: C+ 18116200 ACCCGCGCAGGUUCGAAUCCUGUCCGCAGCG 18116230 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GCCUCCGUGGCGCAAUUGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGUCCACCCGGGGGCG hit 47 : 19417631 19417704 (fwd) 86.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CCGUGGC:CA UUGGU+AG:GCG:U:G:CU U+AA:C:A:AG 19417631 GCCUCCGUGGCGCAAUUGGUuAGCGCGUUCGGCUGUUAACCGAAAG-------------- 19417676 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :::GGUUCGA UCC:::CGG:GGC+ 19417677 ----GuUGGUGGUUCGAGUCCACCCGGGGGCG 19417704 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGGGACGUAGCUCAGUGGUAGAGCGCUCGCUUCGCAUGUGAGAAGUCCCGGGUUCAAACCCCGGCGUCUCCA hit 48 : 20119575 20119646 (fwd) 76.49 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::CGU+GC:CAGU GGUAG:GCGCU: : UC +A : :AGA 20119575 GGGGACGUAGCUCAGU-GGUAGAGCGCUCGCUUCGCAUGUGAGAA--------------- 20119618 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC AA CCCGGCG:: :CA 20119619 ---GuCCCGGGUUCAAACCCCGGCGUCUCCA 20119646 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 0 ----hitSequence: GGGGACGUAGCUCAGUGGUAGAGCGCUCGCUUCGCAUGUGAGAAGUCCCGGGUUCAAACCCCGGCGUCUCCA hit 49 : 20120618 20120689 (fwd) 76.49 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::CGU+GC:CAGU GGUAG:GCGCU: : UC +A : :AGA 20120618 GGGGACGUAGCUCAGU-GGUAGAGCGCUCGCUUCGCAUGUGAGAA--------------- 20120661 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC AA CCCGGCG:: :CA 20120662 ---GuCCCGGGUUCAAACCCCGGCGUCUCCA 20120689 ----endhit ----hitSequence: GGGGACGUAGCUCAGUGGUAGAGCGCUCGCUUCGCAUGUGAGAAGUCCCGGGUUCAAACCCCGGCGUCUCCA hit 50 : 20120335 20120406 (fwd) 76.49 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::CGU+GC:CAGU GGUAG:GCGCU: : UC +A : :AGA 20120335 GGGGACGUAGCUCAGU-GGUAGAGCGCUCGCUUCGCAUGUGAGAA--------------- 20120378 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC AA CCCGGCG:: :CA 20120379 ---GuCCCGGGUUCAAACCCCGGCGUCUCCA 20120406 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCUGCGGUGUCCGAGUGGUUAAGGAGAUGGACUUGAAAUCCAUUGGGUUCUACCCGCACAGGUUCAAGUCCUGUCCGCAGCG hit 51 : 18115668 18115587 (rev) 79.76 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC::C:GUG:CC:AGU GGU+A:GG:G:UGGACU AAAUCCA:+ GG:: U+U 2187088 GCUGCGGUGUCCGAGU-GGUuAAGGAGAUGGACUUGAAAUCCAUU-GGGU---UCU---- 2187138 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 ::CCGC:C:GGUUC A UCC:G:C:G::GC+ 2187139 ACCCGCACAGGUUCAAGUCCUGUCCGCAGCG 2187169 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCGUCGGUGGUGUAAUGGUCAGCAUAGUUGCCUUCCAAGCAGUUGAUCCGGGUUCGAUUCCCGGCCGACGCA hit 52 : 16892029 16891958 (rev) 72.18 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC::C:GUG::::A U GGU A:::: : :G:CU +AA:C: :+G 3410727 GCGUCGGUGGUGUAAU-GGUcAGCAUAGUUGCCUUCCAAGCAGUUG-------------- 3410771 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCGGGUUCGA+UCCCGGC:G::GCA 3410772 ----AUCCGGGUUCGAUUCCCGGCCGACGCA 3410798 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCGUCGGUGGUGUAAUGGUCAGCAUAGUUGCCUUCCAAGCAGUUGAUCCGGGUUCGAUUCCCGGCCGACGCA hit 53 : 16886719 16886648 (rev) 72.18 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC::C:GUG::::A U GGU A:::: : :G:CU +AA:C: :+G 3416037 GCGUCGGUGGUGUAAU-GGUcAGCAUAGUUGCCUUCCAAGCAGUUG-------------- 3416081 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCGGGUUCGA+UCCCGGC:G::GCA 3416082 ----AUCCGGGUUCGAUUCCCGGCCGACGCA 3416108 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GACUCCGUGGCGCAACGGUAGCGCGUCCGACUCCAGAUCGGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCA hit 54 : 16226293 16226222 (rev) 75.59 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:CCGUGGC:CA GGUAG:GCG:::GACUC A+AUC:::AG 4076463 GACUCCGUGGCGCAAC-GGUAGCGCGUCCGACUCCAGAUCGGAAG--------------- 4076506 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ CG:GUUC AAUC:CG CGG:G:CA 4076507 ---GuUGCGUGUUCAAAUCACGUCGGGGUCA 4076534 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GACUCCGUGGCGCAACGGUAGCGCGUCCGACUCCAGAUCGGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCA hit 55 : 16204678 16204607 (rev) 75.59 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:CCGUGGC:CA GGUAG:GCG:::GACUC A+AUC:::AG 4098078 GACUCCGUGGCGCAAC-GGUAGCGCGUCCGACUCCAGAUCGGAAG--------------- 4098121 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ CG:GUUC AAUC:CG CGG:G:CA 4098122 ---GuUGCGUGUUCAAAUCACGUCGGGGUCA 4098149 ----endhit ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 56 : 16204970 16204900 (rev) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 4097786 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 4097829 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 4097830 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 4097856 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GACUCCGUGGCGCAACGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCA hit 57 : 15721887 15721816 (rev) 75.39 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:CCGUGGC:CA GGUAG:GCG:::GACUC A+AUC:::AG 4580869 GACUCCGUGGCGCAAC-GGUAGCGCGUCUGACUCCAGAUCAGAAG--------------- 4580912 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ CG:GUUC AAUC:CG CGG:G:CA 4580913 ---GuUGCGUGUUCAAAUCACGUCGGGGUCA 4580940 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCCAGUGGCCUAAUGGAUAAGGCAUCGGCCUCCUAAGCCGGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUA hit 58 : 15064080 15064008 (rev) 67.47 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 CCCC:GUGGCC A U GG +A GGC :GG:CUC +AA:CC: G 5238676 GCCCCAGUGGCCUAAU-GGAuAAGGCAUCGGCCUCCUAAGCCGGGG-------------- 5238720 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + :GGGUUCGA UCCC: C:GGGG A 5238721 ----AuUGUGGGUUCGAGUCCCAUCUGGGGUA 5238748 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: UCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAA hit 59 : 14791251 14791180 (rev) 80.25 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::UG::C:AGU GG +A:G:: :::G:CU U+A :C:::AG 5511505 UCCCAUAUGGUCUAGU-GGCuAGGAUAUCUGGCUUUCACCCAGAAG-------------- 5511549 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG:::GGG:A 5511550 ----GCCCGGGUUCGAUUCCCGGUAUGGGAA 5511576 ----endhit ----hitSequence: UCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAA hit 60 : 14791772 14791701 (rev) 80.25 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::UG::C:AGU GG +A:G:: :::G:CU U+A :C:::AG 5510984 UCCCAUAUGGUCUAGU-GGCuAGGAUAUCUGGCUUUCACCCAGAAG-------------- 5511028 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG:::GGG:A 5511029 ----GCCCGGGUUCGAUUCCCGGUAUGGGAA 5511055 ----endhit ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUACCCGGCUCUCACCCGGGAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 61 : 14791979 14791908 (rev) 77.88 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: C::G:CUCU+A :C::GAG 5510777 UCCCAUAUUGUCUAGU-GGUuAGGAUACCCGGCUCUCACCCGGGAG-------------- 5510821 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 5510822 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 5510848 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: UCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAA hit 62 : 14789933 14789862 (rev) 80.25 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::UG::C:AGU GG +A:G:: :::G:CU U+A :C:::AG 5512823 UCCCAUAUGGUCUAGU-GGCuAGGAUAUCUGGCUUUCACCCAGAAG-------------- 5512867 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG:::GGG:A 5512868 ----GCCCGGGUUCGAUUCCCGGUAUGGGAA 5512894 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: AGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUA hit 63 : 14789411 14789340 (rev) 70.80 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 ::C:::GUG:C:CAGU GG AG:G:GCUGG:C C +AA:CCAGAG 5513345 AGCAGAGUGGCGCAGU-GGAAGCGUGCUGGGCCCAUAACCCAGAG--------------- 5513388 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CC :GG UCGAA CC: GC:::G::A 5513389 ---GuCCGAGGAUCGAAACCUUGCUCUGCUA 5513416 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: UCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAA hit 64 : 14628664 14628593 (rev) 80.25 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::UG::C:AGU GG +A:G:: :::G:CU U+A :C:::AG 5674092 UCCCAUAUGGUCUAGU-GGCuAGGAUAUCUGGCUUUCACCCAGAAG-------------- 5674136 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG:::GGG:A 5674137 ----GCCCGGGUUCGAUUCCCGGUAUGGGAA 5674163 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCA hit 65 : 14570130 14570059 (rev) 67.13 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC::::U G:C:AGU GGU+A:G:C C:::: U U + ::::G+ 5732626 GCCGUGAUCGUCUAGU-GGUuAGGACCCCACGUUGUGGCCGUGGUA-------------- 5732670 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCC:GGUUCGAAUCC:GG::::GGCA 5732671 ----ACCCAGGUUCGAAUCCUGGUCACGGCA 5732697 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 66 : 13703516 13703446 (rev) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 6599240 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 6599283 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 6599284 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 6599310 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCCGGUUCAAUCCCGGGUUUCGGCA hit 67 : 12668332 12668260 (rev) 82.96 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC::::U+GC:CAGUUGG AG:GCG:U:GACU A+AUC:A:AG 7634424 GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAG--------------- 7634468 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCC:GGUUC A+ CC:GG::::GGCA 7634469 ---GuCCCCGGUUCAAUCCCGGGUUUCGGCA 7634496 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GGGGAUGUAGCUCAGUGGUAGAGCGCUCGCUUUGCAUGUGAGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA hit 68 : 12455570 12455499 (rev) 75.90 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: :::GU+GC:CAGU GGUAG:GCGCU: : U +A : :AGAG 7847186 GGGGAUGUAGCUCAGU-GGUAGAGCGCUCGCUUUGCAUGUGAGAG--------------- 7847229 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G CCCGGGUUCGA+ CCCGGC::: :CA 7847230 ---GcCCCGGGUUCGAUCCCCGGCAUCUCCA 7847257 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 69 : 12207771 12207690 (rev) 71.46 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G: ::CGUGGCC:AG GGU +A:GGCGCUGG: U + :CCAG+ ::CC U+ 8094985 GGUAGCGUGGCCGAGC-GGUcuAAGGCGCUGGUUUAAGGCACCAGU-CUCC---UC---- 8095035 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GG::GC::GGGUUCGAAUCCC::CG:: :CA 8095036 -GGAGGCGUGGGUUCGAAUCCCACCGCUGCCA 8095066 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: UCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAA hit 70 : 11283170 11283099 (rev) 80.25 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::UG::C:AGU GG +A:G:: :::G:CU U+A :C:::AG 9019586 UCCCAUAUGGUCUAGU-GGCuAGGAUAUCUGGCUUUCACCCAGAAG-------------- 9019630 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG:::GGG:A 9019631 ----GCCCGGGUUCGAUUCCCGGUAUGGGAA 9019657 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GGUUCCAUGGUGUAAUGGUUAGCACUCUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUGGAACCU hit 71 : 11271431 11271360 (rev) 73.62 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::CC:UGG:::A U GGU+A:::C CUGGACUCU AAUCCAG G 9031325 GGUUCCAUGGUGUAAU-GGUuAGCACUCUGGACUCUGAAUCCAGCG-------------- 9031369 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCG:GUUC AAUC:CGG:GG:::C 9031370 ----AUCCGAGUUCAAAUCUCGGUGGAACCU 9031396 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 72 : 10048134 10048053 (rev) 71.46 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G: ::CGUGGCC:AG GGU +A:GGCGCUGG: U + :CCAG+ ::CC U+ 10254622 GGUAGCGUGGCCGAGC-GGUcuAAGGCGCUGGUUUAAGGCACCAGU-CUCC---UC---- 10254672 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GG::GC::GGGUUCGAAUCCC::CG:: :CA 10254673 -GGAGGCGUGGGUUCGAAUCCCACCGCUGCCA 10254703 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 73 : 8600831 8600759 (rev) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 11701925 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 11701969 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 11701970 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 11701997 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GUCAGGAUGGCCGAGCGGUCUAAGGCGCCAGACUCAAGAUUUAAAAUCUUACUUUCUGAACGAAAGCGUAUGAGCGUUCUGGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACA hit 74 : 8495529 8495409 (rev) 72.13 bits (((((((,,<<<<_______.._>>>>,<<<<<______..................... 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaA..................... 37 G:C::+:UGGCC:AG GGU +A:GGCGC::GACUC A++++++++++ +++ +++ + + 11807227 GUCAGGAUGGCCGAGC-GGUcuAAGGCGCCAGACUCAAGauuuaaaaucuuacuuucuga 11807285 ................._>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>> 38 .................AuCcagAGggccugcUUUggggggccGCcCgGGUUCGAaUCCc 80 + +++ +++ + UC::G+ :::C U+U G:::GC::GGGUUCGAAUCCC 11807286 acgaaagcguaugagcgUUCUGGU-CCUC---UCU----GAGGGCGUGGGUUCGAAUCCC 11807337 >>))))))): 81 GgcgggGgCa 90 :::+::G:CA 11807338 ACUUCUGACA 11807347 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCA hit 75 : 8495069 8494996 (rev) 82.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:CCC::U+GC:CAGUUGGU+AG:GCG::G::CU +AA::C::AG 11807687 GGCCCAUUAGCUCAGUUGGUuAGAGCGUCGUGCUAAUAACGCGAAG-------------- 11807732 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA+ CCC :::GGG:CA 11807733 ----GuCGCGGGUUCGAUCCCCUCAUGGGCCA 11807760 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCA hit 76 : 7399779 7399708 (rev) 67.13 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC::::U G:C:AGU GGU+A:G:C C:::: U U + ::::G+ 12902977 GCCGUGAUCGUCUAGU-GGUuAGGACCCCACGUUGUGGCCGUGGUA-------------- 12903021 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCC:GGUUCGAAUCC:GG::::GGCA 12903022 ----ACCCAGGUUCGAAUCCUGGUCACGGCA 12903048 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCA hit 77 : 7398710 7398639 (rev) 67.13 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC::::U G:C:AGU GGU+A:G:C C:::: U U + ::::G+ 12904046 GCCGUGAUCGUCUAGU-GGUuAGGACCCCACGUUGUGGCCGUGGUA-------------- 12904090 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCC:GGUUCGAAUCC:GG::::GGCA 12904091 ----ACCCAGGUUCGAAUCCUGGUCACGGCA 12904117 ----endhit ----hitSequence: GCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCA hit 78 : 7399018 7398947 (rev) 67.13 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC::::U G:C:AGU GGU+A:G:C C:::: U U + ::::G+ 12903738 GCCGUGAUCGUCUAGU-GGUuAGGACCCCACGUUGUGGCCGUGGUA-------------- 12903782 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCC:GGUUCGAAUCC:GG::::GGCA 12903783 ----ACCCAGGUUCGAAUCCUGGUCACGGCA 12903809 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCGGUGGCGCAGUUGGCAGCGCGUAAGUCUCAUAAUCUUAAGGUCGUGAGUUCGAGCCUCACCCGGGGCA hit 79 : 6725348 6725276 (rev) 79.41 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C:GUGGC:CAGUUGG AG:GCG:::G CUC +AA C:::AG 13577408 GCCUCGGUGGCGCAGUUGGCAGCGCGUAAGUCUCAUAAUCUUAAG--------------- 13577452 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::G:GUUCGA C:C::C:G:GGCA 13577453 ---GuCGUGAGUUCGAGCCUCACCCGGGGCA 13577480 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GUCCCUUUGGCGCAGAGGAUAGCGCGUUGGACUUCUAAUCCAAAGGUCGCGGGUUCGAUCCCCGCAAGGGAUG hit 80 : 6717152 6717080 (rev) 82.65 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC::UGGC:CAG GG +AG:GCG:UGGACU +AAUCCA:AG 13585604 GUCCCUUUGGCGCAGA-GGAuAGCGCGUUGGACUUCUAAUCCAAAG-------------- 13585648 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA+ CCCG:::GGG: + 13585649 ----GuCGCGGGUUCGAUCCCCGCAAGGGAUG 13585676 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCUUUAGCUCAGUGGCAGAGCACUGGUCUUGUAAACCAGGGGUCGUGAGUUCAAUCCUCACAGGAGGCA hit 81 : 6470013 6469942 (rev) 76.05 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C::U+GC:CAGU GG AG:GC CUGG:CU +AA:CCAG G 13832743 GCCUCUUUAGCUCAGU-GGCAGAGCACUGGUCUUGUAAACCAGGG--------------- 13832786 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::G:GUUC A+ C:C::::G:GGCA 13832787 ---GuCGUGAGUUCAAUCCUCACAGGAGGCA 13832814 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCUUUAGCUCAGUGGCAGAGCACUGGUCUUGUAAACCAGGGGUCGUGAGUUCAAUCCUCACAGGAGGCA hit 82 : 6464551 6464480 (rev) 76.05 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C::U+GC:CAGU GG AG:GC CUGG:CU +AA:CCAG G 13838205 GCCUCUUUAGCUCAGU-GGCAGAGCACUGGUCUUGUAAACCAGGG--------------- 13838248 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::G:GUUC A+ C:C::::G:GGCA 13838249 ---GuCGUGAGUUCAAUCCUCACAGGAGGCA 13838276 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCCACUGAACUUCGGUGGUCCGGGGUGCGGACUUCAAAUCCGUAGUCGAUUUGCGUCGAAGUGGUUCGAUUCCACCUGGGGGGCG hit 83 : 6422360 6422274 (rev) 29.71 bits (((((((,,..<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GcCcccgUG..GCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgg 57 GCCCC :UG++:: C GU GGU G :: ::GGACU AAAUCC::A G:C:: UUU 13880396 GCCCCACUGaaCUUCGGU-GGUcCGGGGUGCGGACUUCAAAUCCGUA-GUCGA--UUU-- 13880449 >>>>>>,,<<<<<_______>>>>.>))))))): 58 ggggccGCcCgGGUUCGAaUCCcG.gcgggGgCa 90 ::G:CG :::GGUUCGA+UCC::+:: GGGGC+ 13880450 -GCGUCGAAGUGGUUCGAUUCCACcUGGGGGGCG 13880482 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GGCGCCGUGGCUUAGUUGGUUAAAGCGCCUGUCUAGUAAACAGGAGAUCGUGAGUUCGAAUCUCGCCGGGGCCU hit 84 : 2131735 2131662 (rev) 75.59 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:C CCGUGGC: AGUUGGU+A :GCGC::G:CU +AA:C::GAG 18171021 GGCGCCGUGGCUUAGUUGGUuAAAGCGCCUGUCUAGUAAACAGGAG-------------- 18171066 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 +C::G:GUUCGAAUC:C::CGG G:C 18171067 ----AuCGUGAGUUCGAAUCUCGCCGGGGCCU 18171094 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GGCGCCGUGGCUUAGUUGGUUAAAGCGCCUGUCUAGUAAACAGGAGAUCGUGAGUUCGAAUUUCGCCGGGGCCU hit 85 : 2130945 2130872 (rev) 69.26 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:C CCGUGGC: AGUUGGU+A :GCGC::G:CU +AA:C::GAG 18171811 GGCGCCGUGGCUUAGUUGGUuAAAGCGCCUGUCUAGUAAACAGGAG-------------- 18171856 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 +C::G: UUCGAAU :C::CGG G:C 18171857 ----AuCGUGAGUUCGAAUUUCGCCGGGGCCU 18171884 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 86 : 2010107 2010035 (rev) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 18292649 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 18292693 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 18292694 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 18292721 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 87 : 2009258 2009186 (rev) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 18293498 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 18293542 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 18293543 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 18293570 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 88 : 2008712 2008640 (rev) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 18294044 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 18294088 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 18294089 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 18294116 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 89 : 2007782 2007710 (rev) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 18294974 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 18295018 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 18295019 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 18295046 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCCGUGGCGCAAUUGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGUCCACCCGGGGGCG hit 90 : 1328667 1328594 (rev) 86.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CCGUGGC:CA UUGGU+AG:GCG:U:G:CU U+AA:C:A:AG 18974089 GCCUCCGUGGCGCAAUUGGUuAGCGCGUUCGGCUGUUAACCGAAAG-------------- 18974134 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :::GGUUCGA UCC:::CGG:GGC+ 18974135 ----GuUGGUGGUUCGAGUCCACCCGGGGGCG 18974162 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCG hit 91 : 1317121 1317049 (rev) 73.10 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+:CC:GUGGC::A U GG +A::GCG:::GACU +AUC:::AG 18985635 GGUCCUGUGGCGCAAU-GGAuAACGCGUCUGACUACGGAUCAGAAG-------------- 18985679 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + CC:GGUUCGA UCC:GGC:GG:+C+ 18985680 ----AuUCCAGGUUCGACUCCUGGCAGGAUCG 18985707 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 92 : 1310033 1309961 (rev) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 18992723 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 18992767 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 18992768 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 18992795 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 93 : 1303413 1303341 (rev) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 18999343 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 18999387 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 18999388 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 18999415 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 94 : 1301218 1301146 (rev) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 19001538 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 19001582 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 19001583 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 19001610 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCCGUGGCGCAAUUGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGUCCACCCGGGGGCG hit 95 : 1300561 1300488 (rev) 86.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CCGUGGC:CA UUGGU+AG:GCG:U:G:CU U+AA:C:A:AG 19002195 GCCUCCGUGGCGCAAUUGGUuAGCGCGUUCGGCUGUUAACCGAAAG-------------- 19002240 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :::GGUUCGA UCC:::CGG:GGC+ 19002241 ----GuUGGUGGUUCGAGUCCACCCGGGGGCG 19002268 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCCGUGGCGCAAUUGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGUCCACCCGGGGGCG hit 96 : 1291544 1291471 (rev) 86.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CCGUGGC:CA UUGGU+AG:GCG:U:G:CU U+AA:C:A:AG 19011212 GCCUCCGUGGCGCAAUUGGUuAGCGCGUUCGGCUGUUAACCGAAAG-------------- 19011257 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :::GGUUCGA UCC:::CGG:GGC+ 19011258 ----GuUGGUGGUUCGAGUCCACCCGGGGGCG 19011285 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 97 : 1281312 1281240 (rev) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 19021444 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 19021488 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 19021489 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 19021516 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GACCCUUUAGCGCAUUGGAUAGCGCGUUGGACUUCUAAUCCAAAGGUGGCGGGUUCGAUUCCCGCAAGGGUUG hit 98 : 1967091 1967163 (fwd) 74.50 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC::U+GC:CA U GG +AG:GCG:UGGACU +AAUCCA:AG 1967091 GACCCUUUAGCGCAUU-GGAuAGCGCGUUGGACUUCUAAUCCAAAG-------------- 1967135 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :CGGGUUCGA+UCCCG:::GGG: + 1967136 ----GuGGCGGGUUCGAUUCCCGCAAGGGUUG 1967163 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCU hit 99 : 2011203 2011274 (fwd) 72.35 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::CC:UGG:::A U GGU+A:::C C:GGACUCU AAUCC:G G 2011203 GGUUCCAUGGUGUAAU-GGUuAGCACUCAGGACUCUGAAUCCUGCG-------------- 2011247 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCG:GUUC AAUC:CGG:GG:::C 2011248 ----AUCCGAGUUCAAAUCUCGGUGGAACCU 2011274 ----endhit ----hitSequence: GGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCU hit 100 : 2010820 2010891 (fwd) 72.35 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::CC:UGG:::A U GGU+A:::C C:GGACUCU AAUCC:G G 2010820 GGUUCCAUGGUGUAAU-GGUuAGCACUCAGGACUCUGAAUCCUGCG-------------- 2010864 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCG:GUUC AAUC:CGG:GG:::C 2010865 ----AUCCGAGUUCAAAUCUCGGUGGAACCU 2010891 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 101 : 2033357 2033427 (fwd) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 2033357 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 2033400 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 2033401 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 2033427 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GGCCGUGUAGCCUAAUGGAUAAGGCGUCGGAUUUCUGAUCCGAAAAUUGCGGGUUCAAGUCCCGUCAUGGUCG hit 102 : 2179574 2179646 (fwd) 66.31 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+CC+:GU+GCC A U GG +A GGCG::GGA U ++AUCC::A 2179574 GGCCGUGUAGCCUAAU-GGAuAAGGCGUCGGAUUUCUGAUCCGAAA-------------- 2179618 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + CGGGUUC A UCCCG C:+GG+C+ 2179619 ----AuUGCGGGUUCAAGUCCCGUCAUGGUCG 2179646 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: CCUUCGAUAGCUCAGUUGGUAGAGCGGUGGACUGUAGAUUGGGAUUACGAAUGUAGACAUCCAUAGGUCGCUGGUUCAAAUCCGGCUCGAAGGA hit 103 : 2455160 2455253 (fwd) 77.83 bits (((((((,,<<<<________>>>>,<<<<<______....................._> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaA.....................Au 39 :C::C::U+GC:CAGUUGGUAG:GCG:UGGACU UA++++ ++++ +++ ++ + AU 2455160 CCUUCGAUAGCUCAGUUGGUAGAGCGGUGGACUGUAGauugggauuacgaauguagacAU 2455219 >>>>,,<<<<<<<____>>>>>>>,.,<<<<<_______>>>>>))))))): 40 CcagAGggccugcUUUggggggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 CCA:AG G+C:C:GGUUC AAUCC:G:::G::G:A 2455220 CCAUAG------------------GuCGCUGGUUCAAAUCCGGCUCGAAGGA 2455253 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GCAGUCGUGGCCGAGCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGACUGCG hit 104 : 3162151 3162232 (fwd) 84.52 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUGGCC:AG GGU+A:GGCG:::GACU AAAUC:::+ ::CC U+U 3162151 GCAGUCGUGGCCGAGC-GGUuAAGGCGUCUGACUAGAAAUCAGAU-UCCC---UCU---- 3162201 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GG::GC:::GGUUCGAAUCC:::CG:::GC+ 3162202 GGGAGCGUAGGUUCGAAUCCUACCGACUGCG 3162232 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGUGUUCAAUUCCCCGUCGGGGAG hit 105 : 5233337 5233408 (fwd) 68.67 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 5233337 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 5233381 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:G:GUUC A+UC:C:G::G:GG:+ 5233382 ----ACCGGUGUUCAAUUCCCCGUCGGGGAG 5233408 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GCCCCAGUGGCCUAAUGGAUAAGGCAUCGGCCUCCUAAGCCGGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUA hit 106 : 6791960 6792032 (fwd) 67.47 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 CCCC:GUGGCC A U GG +A GGC :GG:CUC +AA:CC: G 6791960 GCCCCAGUGGCCUAAU-GGAuAAGGCAUCGGCCUCCUAAGCCGGGG-------------- 6792004 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + :GGGUUCGA UCCC: C:GGGG A 6792005 ----AuUGUGGGUUCGAGUCCCAUCUGGGGUA 6792032 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: CCUUCGAUAGCUCAGUUGGUAGAGCGGUGGACUGUAGAGUUUCCGAGGCUUGGUGAUGCGAGCAGAGGCAGGACUCUGGGCCAAACAAUACCAUGGCCCCAGAUAGCGCUUGCUCUUGUUUCAUCAGUUAGUGAAUCGCGAUAUGUUGAAAUCCAUAGGUCGCUGGUUCAAAUCCGGCUCGAAGGA hit 107 : 7703707 7703892 (fwd) 64.77 bits (((((((,,<<<<________>>>>,<<<<<______....................... 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaA....................... 37 :C::C::U+GC:CAGUUGGUAG:GCG:UGGACU UA++ +++ + ++ + ++ 7703707 CCUUCGAUAGCUCAGUUGGUAGAGCGGUGGACUGUAGaguuuccgaggcuuggugaugcg 7703766 ............................................................ - ............................................................ - + + + + + + + +++ ++++ ++ + +++ ++ + ++ ++ 7703767 agcagaggcaggacucugggccaaacaauaccauggccccagauagcgcuugcucuuguu 7703826 .............................._>>>>>,,<<<<<<<____>>>>>>>,.,< 38 ..............................AuCcagAGggccugcUUUggggggccG.Cc 66 + ++ + +++ + +++ ++++ ++ ++AUCCA:AG G+C: 7703827 ucaucaguuagugaaucgcgauauguugaaAUCCAUAG------------------GuCG 7703868 <<<<_______>>>>>))))))): 67 CgGGUUCGAaUCCcGgcgggGgCa 90 C:GGUUC AAUCC:G:::G::G:A 7703869 CUGGUUCAAAUCCGGCUCGAAGGA 7703892 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 108 : 7865080 7865150 (fwd) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 7865080 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 7865123 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 7865124 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 7865150 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GCCCGGGUAGCUCAGUCGGUAGAGCAUUGGACUUUUAAUCCAAGGGUCCAGGGUUCAAGUCCCUGCUCGGGCG hit 109 : 8282958 8283030 (fwd) 84.69 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC:+GU+GC:CAGU+GGUAG:GC :UGGACU U+AAUCCA: G 8282958 GCCCGGGUAGCUCAGUCGGUAGAGCAUUGGACUUUUAAUCCAAGG--------------- 8283002 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CC:GGGUUC A UCCC:GC+:GGGC+ 8283003 ---GuCCAGGGUUCAAGUCCCUGCUCGGGCG 8283030 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGUCGGGGAG hit 110 : 8474008 8474079 (fwd) 75.32 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 8474008 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 8474052 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUC A+UCCC:G::G:GG:+ 8474053 ----ACCGGGGUUCAAUUCCCCGUCGGGGAG 8474079 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGUCGGGGAG hit 111 : 8533992 8534063 (fwd) 75.32 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 8533992 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 8534036 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUC A+UCCC:G::G:GG:+ 8534037 ----ACCGGGGUUCAAUUCCCCGUCGGGGAG 8534063 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCCGGUUCAAUCCCGGGUUUCGGCA hit 112 : 8563119 8563191 (fwd) 82.96 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC::::U+GC:CAGUUGG AG:GCG:U:GACU A+AUC:A:AG 8563119 GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAG--------------- 8563163 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCC:GGUUC A+ CC:GG::::GGCA 8563164 ---GuCCCCGGUUCAAUCCCGGGUUUCGGCA 8563191 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGUCGGGGAG hit 113 : 8612259 8612330 (fwd) 75.32 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 8612259 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 8612303 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUC A+UCCC:G::G:GG:+ 8612304 ----ACCGGGGUUCAAUUCCCCGUCGGGGAG 8612330 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGUCGGGGAG hit 114 : 8671347 8671418 (fwd) 75.32 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 8671347 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 8671391 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUC A+UCCC:G::G:GG:+ 8671392 ----ACCGGGGUUCAAUUCCCCGUCGGGGAG 8671418 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGUCGGGGAG hit 115 : 8675682 8675753 (fwd) 75.32 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 8675682 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 8675726 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUC A+UCCC:G::G:GG:+ 8675727 ----ACCGGGGUUCAAUUCCCCGUCGGGGAG 8675753 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC hit 116 : 14478030 14478101 (fwd) 72.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:C::UG::C:AG GGUA:G:: ::G: U + :C:: AG 14478030 GGCUCGUUGGUCUAGG-GGUAUGAUUUCCGCUUAGGGUGCGGGAG--------------- 14478073 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC AAUCCCGG::G:G:C 14478074 ---GuCCCGGGUUCAAAUCCCGGACGAGCCC 14478101 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 117 : 14500243 14500313 (fwd) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 14500243 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 14500286 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 14500287 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 14500313 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC hit 118 : 14581011 14581082 (fwd) 72.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:C::UG::C:AG GGUA:G:: ::G: U + :C:: AG 14581011 GGCUCGUUGGUCUAGG-GGUAUGAUUUCCGCUUAGGGUGCGGGAG--------------- 14581054 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC AAUCCCGG::G:G:C 14581055 ---GuCCCGGGUUCAAAUCCCGGACGAGCCC 14581082 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 0 ----hitSequence: GGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC hit 119 : 14581826 14581897 (fwd) 72.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:C::UG::C:AG GGUA:G:: ::G: U + :C:: AG 14581826 GGCUCGUUGGUCUAGG-GGUAUGAUUUCCGCUUAGGGUGCGGGAG--------------- 14581869 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC AAUCCCGG::G:G:C 14581870 ---GuCCCGGGUUCAAAUCCCGGACGAGCCC 14581897 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GCCAGGUUGGCCGAGCGGUCUAAGGCGCCAGAUUUAAGCUCUGGUUCUCGAGAGAGAGCGUGGGUUCGAGUCCCACACCUGGCA hit 120 : 15110474 15110391 (rev) 68.84 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 GCC::::UGGCC:AG GGU +A:GGCGC::GA U A+ UC::G+ :::C : : 7107458 GCCAGGUUGGCCGAGC-GGUcuAAGGCGCCAGAUUUAAGCUCUGGU-UCUCGA------G 7107509 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 G:::GC::GGGUUCGA UCCC::::::GGCA 7107510 AGAGAGCGUGGGUUCGAGUCCCACACCUGGCA 7107541 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC hit 121 : 14581619 14581548 (rev) 72.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:C::UG::C:AG GGUA:G:: ::G: U + :C:: AG 7636313 GGCUCGUUGGUCUAGG-GGUAUGAUUUCCGCUUAGGGUGCGGGAG--------------- 7636356 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC AAUCCCGG::G:G:C 7636357 ---GuCCCGGGUUCAAAUCCCGGACGAGCCC 7636384 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 122 : 14512768 14512698 (rev) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 7705164 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 7705207 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 7705208 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 7705234 ----endhit ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCUGGGUUCGAUUCCCGGCCGAUGCA hit 123 : 14513076 14513006 (rev) 77.93 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 7704856 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 7704899 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCC:GGGUUCGA+UCCC:GC:G::GCA 7704900 ---GCCUGGGUUCGAUUCCCGGCCGAUGCA 7704926 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 124 : 14500529 14500459 (rev) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 7717403 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 7717446 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 7717447 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 7717473 ----endhit ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 125 : 14500843 14500773 (rev) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 7717089 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 7717132 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 7717133 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 7717159 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCU hit 126 : 13992788 13992717 (rev) 69.02 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::C::UGG:::A U GGU+A:::C UGGACUCU AAUCCA G 8225144 GGUUCUAUGGUGUAAU-GGUuAGCACUUUGGACUCUGAAUCCAGCG-------------- 8225188 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCG:GUUC AAUC:CGG::G:::C 8225189 ----AUCCGAGUUCAAAUCUCGGUAGAACCU 8225215 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GGCGCCGUGGCUUAGUUGGUUAAAGCGCCUGUCUAGUAAACAGGAGAUCGUGAGUUCGAAUCUCGCCGGGGCCU hit 127 : 9228829 9228756 (rev) 75.59 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:C CCGUGGC: AGUUGGU+A :GCGC::G:CU +AA:C::GAG 12989103 GGCGCCGUGGCUUAGUUGGUuAAAGCGCCUGUCUAGUAAACAGGAG-------------- 12989148 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 +C::G:GUUCGAAUC:C::CGG G:C 12989149 ----AuCGUGAGUUCGAAUCUCGCCGGGGCCU 12989176 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGUCGGGGAG hit 128 : 8676108 8676037 (rev) 75.32 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 13541824 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 13541868 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUC A+UCCC:G::G:GG:+ 13541869 ----ACCGGGGUUCAAUUCCCCGUCGGGGAG 13541895 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGUCGGGGAG hit 129 : 8533854 8533783 (rev) 75.32 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 13684078 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 13684122 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUC A+UCCC:G::G:GG:+ 13684123 ----ACCGGGGUUCAAUUCCCCGUCGGGGAG 13684149 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGUCGGGGAG hit 130 : 8474386 8474315 (rev) 75.32 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 13743546 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 13743590 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUC A+UCCC:G::G:GG:+ 13743591 ----ACCGGGGUUCAAUUCCCCGUCGGGGAG 13743617 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: UCCUCGAUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGUCGGGGAG hit 131 : 5233748 5233677 (rev) 75.32 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C::U+::::AGU GGU+A:::: C::G:CU U+A :C::GAG 16984184 UCCUCGAUAGUAUAGU-GGUuAGUAUCCCCGCCUGUCACGCGGGAG-------------- 16984228 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUC A+UCCC:G::G:GG:+ 16984229 ----ACCGGGGUUCAAUUCCCCGUCGGGGAG 16984255 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GACUCCGUGGCGCAACGGUAGCGCGUCCGACUCCAGAUCGGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCA hit 132 : 4411617 4411546 (rev) 75.59 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:CCGUGGC:CA GGUAG:GCG:::GACUC A+AUC:::AG 17806315 GACUCCGUGGCGCAAC-GGUAGCGCGUCCGACUCCAGAUCGGAAG--------------- 17806358 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ CG:GUUC AAUC:CG CGG:G:CA 17806359 ---GuUGCGUGUUCAAAUCACGUCGGGGUCA 17806386 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GCAGUCGUGGCCGAGCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGACUGCG hit 133 : 3165653 3165572 (rev) 84.52 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUGGCC:AG GGU+A:GGCG:::GACU AAAUC:::+ ::CC U+U 19052279 GCAGUCGUGGCCGAGC-GGUuAAGGCGUCUGACUAGAAAUCAGAU-UCCC---UCU---- 19052329 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GG::GC:::GGUUCGAAUCC:::CG:::GC+ 19052330 GGGAGCGUAGGUUCGAAUCCUACCGACUGCG 19052360 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: CCUUCGAUAGCUCAGUUGGUAGAGCGGUGGACUGUAGAAGUUUUCAGAUCUGAUCACACUUUCCAGGUGAUCGAAUCCAGCAGGCAUCCAUAGGUCGCUGGUUCAAAUCCGGCUCGAAGGA hit 134 : 2452611 2452491 (rev) 73.77 bits (((((((,,<<<<________>>>>,<<<<<______....................... 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaA....................... 37 :C::C::U+GC:CAGUUGGUAG:GCG:UGGACU UA+++ ++++ + ++ + ++ + + + 19765321 CCUUCGAUAGCUCAGUUGGUAGAGCGGUGGACUGUAGaaguuuucagaucugaucacacu 19765380 ........................._>>>>>,,<<<<<<<____>>>>>>>,.,<<<<<_ 38 .........................AuCcagAGggccugcUUUggggggccG.CcCgGGU 71 ++ + + ++ +++ + + AUCCA:AG G+C:C:GGU 19765381 uuccaggugaucgaauccagcaggcAUCCAUAG------------------GuCGCUGGU 19765422 ______>>>>>))))))): 72 UCGAaUCCcGgcgggGgCa 90 UC AAUCC:G:::G::G:A 19765423 UCAAAUCCGGCUCGAAGGA 19765441 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCU hit 135 : 2014915 2014844 (rev) 72.35 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::CC:UGG:::A U GGU+A:::C C:GGACUCU AAUCC:G G 20203017 GGUUCCAUGGUGUAAU-GGUuAGCACUCAGGACUCUGAAUCCUGCG-------------- 20203061 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCG:GUUC AAUC:CGG:GG:::C 20203062 ----AUCCGAGUUCAAAUCUCGGUGGAACCU 20203088 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCU hit 136 : 2012382 2012311 (rev) 72.35 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::CC:UGG:::A U GGU+A:::C C:GGACUCU AAUCC:G G 20205550 GGUUCCAUGGUGUAAU-GGUuAGCACUCAGGACUCUGAAUCCUGCG-------------- 20205594 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCG:GUUC AAUC:CGG:GG:::C 20205595 ----AUCCGAGUUCAAAUCUCGGUGGAACCU 20205621 ----endhit ----hitSequence: GGUUCUAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUAGAACCU hit 137 : 2012605 2012534 (rev) 71.09 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::C::UGG:::A U GGU+A:::C C:GGACUCU AAUCC:G G 20205327 GGUUCUAUGGUGUAAU-GGUuAGCACUCAGGACUCUGAAUCCUGCG-------------- 20205371 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCG:GUUC AAUC:CGG::G:::C 20205372 ----AUCCGAGUUCAAAUCUCGGUAGAACCU 20205398 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #1,emb|AE014134| Drosophila melanogaster chromosome 2L complete sequence. ----isReversed: 1 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA hit 138 : 1939824 1939754 (rev) 82.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C:GUG:::CAGU GGUAG:::GC :G:CU +A :C: G G 20278108 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 20278151 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC:G::GCA 20278152 ---GCCCGGGUUCGAUUCCCGGCCGAUGCA 20278178 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #3,emb|AE014296| Drosophila melanogaster chromosome 3L, complete sequence. ----isReversed: 0 ----hitSequence: GCUCCAGUGGCGCAAUUGGUUAGCGCACGGUACUUAUAAUCAGUAUUCUGUGUGUAUGAGCUAUGCCGGGGUUGUGAGUUCGAGCCUCACCUGGAGCA hit 139 : 750132 750229 (fwd) 65.56 bits (((((((,,<<<<_______._>>>>,<<<<<______...................... 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaA...................... 37 GC:CC:GUGGC:CA UUGGU+AG:GC C:G:ACU +A++ + ++++ + + + +++ + 750132 GCUCCAGUGGCGCAAUUGGUuAGCGCACGGUACUUAUAaucaguauucuguguguaugag 750191 .._>>>>>,,<<<<<<<____>>>>>>>,.,<<<<<_______>>>>>))))))): 38 ..AuCcagAGggccugcUUUggggggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 +AU:C:G G G+ ::G:GUUCGA C:C::C:GG:GCA 750192 cuAUGCCGGG------------------GuUGUGAGUUCGAGCCUCACCUGGAGCA 750229 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #3,emb|AE014296| Drosophila melanogaster chromosome 3L, complete sequence. ----isReversed: 0 ----hitSequence: GCUCCAGUGGCGCAAUUGGUUAGCGCACGGUACUUAUAAUCAGUAUUCUGUGUGUAUAUGAGCUAUGCCGGGGUUGUGAGUUCGAGCCUCACCUGGAGCA hit 140 : 750992 751091 (fwd) 65.96 bits (((((((,,<<<<_______._>>>>,<<<<<______...................... 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaA...................... 37 GC:CC:GUGGC:CA UUGGU+AG:GC C:G:ACU +A++ + ++++ + + + +++++ 750992 GCUCCAGUGGCGCAAUUGGUuAGCGCACGGUACUUAUAaucaguauucuguguguauaug 751051 ...._>>>>>,,<<<<<<<____>>>>>>>,.,<<<<<_______>>>>>))))))): 38 ....AuCcagAGggccugcUUUggggggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + +AU:C:G G G+ ::G:GUUCGA C:C::C:GG:GCA 751052 agcuAUGCCGGG------------------GuUGUGAGUUCGAGCCUCACCUGGAGCA 751091 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #3,emb|AE014296| Drosophila melanogaster chromosome 3L, complete sequence. ----isReversed: 0 ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 141 : 1361158 1361229 (fwd) 77.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 1361158 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 1361202 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 1361203 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 1361229 ----endhit ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 142 : 1360867 1360938 (fwd) 77.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 1360867 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 1360911 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 1360912 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 1360938 ----endhit ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 143 : 1360563 1360634 (fwd) 77.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 1360563 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 1360607 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 1360608 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 1360634 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #3,emb|AE014296| Drosophila melanogaster chromosome 3L, complete sequence. ----isReversed: 0 ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 144 : 1379035 1379106 (fwd) 77.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 1379035 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 1379079 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 1379080 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 1379106 ----endhit ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 145 : 1378798 1378869 (fwd) 77.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 1378798 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 1378842 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 1378843 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 1378869 ----endhit ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 146 : 1378561 1378632 (fwd) 77.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 1378561 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 1378605 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 1378606 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 1378632 ----endhit ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 147 : 1378324 1378395 (fwd) 77.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 1378324 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 1378368 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 1378369 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 1378395 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #3,emb|AE014296| Drosophila melanogaster chromosome 3L, complete sequence. ----isReversed: 0 ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 148 : 1382069 1382140 (fwd) 77.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 1382069 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 1382113 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 1382114 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 1382140 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #3,emb|AE014296| Drosophila melanogaster chromosome 3L, complete sequence. ----isReversed: 0 ----hitSequence: UCCCAUAUUGUCUAGUGGUUAGGAUAUCCGGCUCUCACCCGGAAGGCCCGGGUUCAAUUCCCGGUAUGGGAA hit 149 : 1382410 1382481 (fwd) 77.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC:::U ::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 1382410 UCCCAUAUUGUCUAGU-GGUuAGGAUAUCCGGCUCUCACCCGGAAG-------------- 1382454 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUC A+UCCCGG:::GGG:A 1382455 ----GCCCGGGUUCAAUUCCCGGUAUGGGAA 1382481 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #3,emb|AE014296| Drosophila melanogaster chromosome 3L, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGCAUAGCUCAGGGGUAGAGCGUUCGACUGCAGAUCGACAGGUCCCUGGUUCAAAUCCGGGUGCCCCCU hit 150 : 1906270 1906341 (fwd) 75.77 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G::::C:U+GC:CAG GGUAG:GCG U:GACU A+AUC:A AG 1906270 GGGGGCAUAGCUCAGG-GGUAGAGCGUUCGACUGCAGAUCGACAG--------------- 1906313 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCC:GGUUC AAUCC:GG:G::::C 1906314 ---GuCCCUGGUUCAAAUCCGGGUGCCCCCU 1906341 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #3,emb|AE014296| Drosophila melanogaster chromosome 3L, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU hit 151 : 2254373 2254444 (fwd) 74.43 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G::::::U+GC:CAG GGUAG:GC U:GACU A+AUC:A AG 2254373 GGGGGUAUAGCUCAGG-GGUAGAGCAUUCGACUGCAGAUCGAGAG--------------- 2254416 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCC:GGUUC AAUCC:GG::::::C 2254417 ---GuCCCCGGUUCAAAUCCGGGUGCCCCCU 2254444 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta ----sequence: #3,emb|AE014296| Drosophila melanogaster chromosome 3L, complete sequence. ----isReversed: 0 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 152 : 3077233 3077305 (fwd) 80.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC :::GACUCU+AAUC::: G 3077233 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGG--------------- 3077277 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA CCC:::++GGGC+ 3077278 ---GuCGUGGGUUCGAGCCCCACGUUGGGCG 3077305 ----endhit ----hitSequence: GGGGAUAUAGCUCAGUGGUAGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCU hit 153 : 3076998 3077069 (fwd) 75.88 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G::::::U+GC:CAGU GGUAG:GC U:GACU A+AUC:A AG 3076998 GGGGAUAUAGCUCAGU-GGUAGAGCAUUCGACUGCAGAUCGAGAG--------------- 3077041 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCC:GGU