params (warning: commas chnged to semicolons),CM file,virtual or actual fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format,actual fasta file,%GC of hit,# MATP nodes,# unpaired MATP,# G-U in MATP,# other non-canon in MATP,E-value (if any)
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,0,185335,185409,20.62,GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUUA,****    NEW  HIT  #0  ****,,2,0,BX284601/185335-185409,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,1,754682,754765,72.47,GCCGUUCUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCCUCUCCGGAGGGCGCAGGUUCGAAUCCUGCGGACGGCA,****    NEW  HIT  #1  ****,,2,0,BX284601/754682-754765,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,2,803802,803874,36.48,CCGCUUGUAGUCUAGUGGUUAACACGCUUCAGCUCUAAACAAUAGGUCCGGGGUUCGAUUCCUUGCAAGAUGA,****    NEW  HIT  #2  ****,,2,0,BX284601/803802-803874,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,3,1447139,1447211,72.91,GGCCUUGUGGCCUAAUGGAUAAGGCGUCUGACUUCUAAUCAGAAGAUUGCAGGUUCGAGCCCUGCCUGGGUCA,****    NEW  HIT  #3  ****,,2,0,BX284601/1447139-1447211,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,4,1575721,1575793,72.91,GGCCUUGUGGCCUAAUGGAUAAGGCGUCUGACUUCUAAUCAGAAGAUUGCAGGUUCGAGCCCUGCCUGGGUCA,****    NEW  HIT (duplicate of new hit #3)   ****,,2,0,BX284601/1575721-1575793,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,5,6143965,6144048,75.12,CCGUCGAUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAGUUCGCAGAUAUCCUUAGGUCACUGGUUCGAAUCCGGUUCGACGGA,****    NEW  HIT  #5  ****,,2,0,BX284601/6143965-6144048,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,6,6144732,6144804,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT  #6  ****,,2,0,BX284601/6144732-6144804,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,7,6172255,6172328,85.72,GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA,****    NEW  HIT  #7  ****,,2,0,BX284601/6172255-6172328,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,8,6789866,6789937,70.50,GGGGGUAUAGCUCAGUGGCAGAGCAUUCGACUGCAGAUCGAGAGGUCCCUGGUUCAACUCCGGGUGCCCCCU,****    NEW  HIT  #8  ****,,2,0,BX284601/6789866-6789937,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,9,7850971,7851045,20.62,GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUUA,****    NEW  HIT (duplicate of new hit #0)   ****,,2,0,BX284601/7850971-7851045,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,10,7968894,7968978,79.66,GCCCCGGUGGCCGAGCGGUCGAAGGCGUGAGACUUAUGAUCUCAUUGGGUUAAACCAGUCGCGGGUUCGAAUCCCGCCCGGGGCA,****    NEW  HIT  #10  ****,,2,0,BX284601/7968894-7968978,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,11,8799410,8799482,24.15,GCUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCACACAUGGUU,****    NEW  HIT  #11  ****,,2,0,BX284601/8799410-8799482,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,12,8961224,8961296,65.31,GUGUCCUUAGCUCAGUUGGUAGAGCGUGAGACUUUUAAUCUUAAGGUCAGGGGUUCGAGUCCCCUAGGUGGCU,****    NEW  HIT  #12  ****,,2,0,BX284601/8961224-8961296,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,13,9275176,9275248,73.13,GGCCGCGUGGCCUAAUGGAUAAGGCACCAGACUUCGAAUCUGGGGAUUGCAGGUUCGAGUCCUGCCGUGGUCG,****    NEW  HIT  #13  ****,,2,0,BX284601/9275176-9275248,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,14,9328231,9328302,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT  #14  ****,,2,0,BX284601/9328231-9328302,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,15,9335690,9335761,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284601/9335690-9335761,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,16,9336683,9336754,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284601/9336683-9336754,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,17,9566845,9566927,67.89,GCCCCGGUGGCCGAGCGGUCGAAGGCGUGAGACUUGUUCUCAUUGGGUUAAACCAGUCGCGGGUUCGAAUCCCGCCCGGGGCA,****    NEW  HIT  #17  ****,,2,0,BX284601/9566845-9566927,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,18,9570406,9570490,79.66,GCCCCGGUGGCCGAGCGGUCGAAGGCGUGAGACUUAUGAUCUCAUUGGGUUAAACCAGUCGCGGGUUCGAAUCCCGCCCGGGGCA,****    NEW  HIT (duplicate of new hit #10)   ****,,2,0,BX284601/9570406-9570490,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,19,9613809,9613890,83.30,GCAGCGAUGUCCGAGUGGUUAAGGAGUUGGACUUGAAAUCCAAUGGGCUUUGCCCGCGUAGGUUCGAACCCUGCUCGCUGCG,****    NEW  HIT  #19  ****,,2,0,BX284601/9613809-9613890,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,20,9687694,9687768,20.62,GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUUA,****    NEW  HIT (duplicate of new hit #0)   ****,,2,0,BX284601/9687694-9687768,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,21,9891746,9891817,79.03,UCCCAUGUGGUCUAGUGGUUAGGAUUCGUGGUUUUCACCCACGCGGCCCGGGUUCGAUUCCCGGCAUGGGAA,****    NEW  HIT  #21  ****,,2,0,BX284601/9891746-9891817,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,22,10601186,10601256,78.60,GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUGCA,****    NEW  HIT  #22  ****,,2,0,BX284601/10601186-10601256,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,23,10609900,10609982,72.02,GCGGUGGUGGCCGAGCGGUCAAGGCGUAGGACUCCCGAUCCUAUUCUGGUAACAGAGCGCGGGUUCGAAUCCCGUCCACCGCA,****    NEW  HIT  #23  ****,,2,0,BX284601/10609900-10609982,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,24,10815253,10815324,66.02,UCCUCGGUAGUAUAGUGGUGAGUAUCCGCGUCUGUCACAUGCGAGACCCGGGUUCAAUUCCCGGCCGGGGAG,****    NEW  HIT  #24  ****,,2,0,BX284601/10815253-10815324,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,25,10879671,10879743,24.15,GCUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCACACAUGGUU,****    NEW  HIT (duplicate of new hit #11)   ****,,2,0,BX284601/10879671-10879743,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,26,10935636,10935707,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284601/10935636-10935707,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,27,10953874,10953946,56.44,GCCUCGAUAGCUCAGUUGGGGUGAGCGUACGACUGAAAAUCGUUAGGUCACCAGUUCGAUCCUGGUUCGGGCA,****    NEW  HIT  #27  ****,,2,0,BX284601/10953874-10953946,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,28,11166679,11166749,57.35,GCAUUGGUGGCUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCAGCCCGGGUCCAAUUCCCGGUCGAUGCA,****    NEW  HIT  #28  ****,,2,0,BX284601/11166679-11166749,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,29,11513602,11513673,70.50,GGGGGUAUAGCUCAGUGGCAGAGCAUUCGACUGCAGAUCGAGAGGUCCCUGGUUCAACUCCGGGUGCCCCCU,****    NEW  HIT (duplicate of new hit #8)   ****,,2,0,BX284601/11513602-11513673,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,30,11592837,11592909,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284601/11592837-11592909,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,31,11986042,11986113,80.85,UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA,****    NEW  HIT  #31  ****,,2,0,BX284601/11986042-11986113,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,32,11986814,11986885,80.85,UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA,****    NEW  HIT (duplicate of new hit #31)   ****,,2,0,BX284601/11986814-11986885,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,33,12073915,12073987,77.09,GGUCUCGUGGUGUAGUGGUUAUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCA,****    NEW  HIT  #33  ****,,2,0,BX284601/12073915-12073987,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,34,12150961,12151032,70.44,AGCAGCGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGGUGGAUCGAAACCACUCGCUGCUA,****    NEW  HIT  #34  ****,,2,0,BX284601/12150961-12151032,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,35,12206653,12206725,74.33,GGCCUUGUGGCCUAAUGGAUAAGGCGUCUGACUUCUAAUCAGAAGAUUGCAGGUUCGAUCCCUGCCUGGGUCA,****    NEW  HIT  #35  ****,,2,0,BX284601/12206653-12206725,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,36,12237359,12237430,70.44,AGCAGCGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGGUGGAUCGAAACCACUCGCUGCUA,****    NEW  HIT (duplicate of new hit #34)   ****,,2,0,BX284601/12237359-12237430,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,37,12609827,12609894,43.83,GUGUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUAACUCCA,****    NEW  HIT  #37  ****,,2,0,BX284601/12609827-12609894,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,38,13169108,13169180,77.09,GGUCUCGUGGUGUAGUGGUUAUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCA,****    NEW  HIT (duplicate of new hit #33)   ****,,2,0,BX284601/13169108-13169180,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,39,13333041,13333112,65.36,GCGUUCGGGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT  #39  ****,,2,0,BX284601/13333041-13333112,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,0,40,14170885,14170966,81.67,GAUCAGGUGGCCGAGUGGUUAAGGCGAUGGACUGCUAAUCCAUUGGGGUUUCCCCGCGUGAGUUCGAAUCUCAUCCUGAUCG,****    NEW  HIT  #40  ****,,2,0,BX284601/14170885-14170966,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,41,13339264,13339193,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284601/13339264-13339193,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,42,13332297,13332226,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284601/13332297-13332226,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,43,13318462,13318391,78.76,GCCCUUAUAGCUCAGUGGUAGAGCGUUGGUCUUGUAAACCAAAGGUCCGUAGUUCAAUCCUGCGUGGGGGCA,****    NEW  HIT  #43  ****,,2,0,BX284601/13318462-13318391,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,44,13305791,13305719,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284601/13305791-13305719,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,45,13164476,13164404,77.09,GGUCUCGUGGUGUAGUGGUUAUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCA,****    NEW  HIT (duplicate of new hit #33)   ****,,2,0,BX284601/13164476-13164404,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,46,12739777,12739706,23.67,GGCCAAAUGGCGCAGUGGAAAAAUUCAUGGCUAAGAAUUAUCACACCGGGGUUCGACUCCCCGCUGUGGUCG,****    NEW  HIT  #46  ****,,2,0,BX284601/12739777-12739706,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,47,12233547,12233476,70.44,AGCAGCGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGGUGGAUCGAAACCACUCGCUGCUA,****    NEW  HIT (duplicate of new hit #34)   ****,,2,0,BX284601/12233547-12233476,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,48,11985312,11985241,80.85,UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA,****    NEW  HIT (duplicate of new hit #31)   ****,,2,0,BX284601/11985312-11985241,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,49,11811447,11811366,83.07,GCAGUCAUGUCCGAGUGGUUAAGGAGUUUGACUCGAAAUCAAAUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG,****    NEW  HIT  #49  ****,,2,0,BX284601/11811447-11811366,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,50,11593501,11593420,65.77,GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA,****    NEW  HIT  #50  ****,,2,0,BX284601/11593501-11593420,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,51,11592244,11592172,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284601/11592244-11592172,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,52,11587828,11587756,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284601/11587828-11587756,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,53,10935537,10935466,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284601/10935537-10935466,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,54,10880814,10880742,24.15,GCUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCACACAUGGUU,****    NEW  HIT (duplicate of new hit #11)   ****,,2,0,BX284601/10880814-10880742,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,55,10612265,10612183,72.02,GCGGUGGUGGCCGAGCGGUCAAGGCGUAGGACUCCCGAUCCUAUUCUGGUAACAGAGCGCGGGUUCGAAUCCCGUCCACCGCA,****    NEW  HIT (duplicate of new hit #23)   ****,,2,0,BX284601/10612265-10612183,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,56,10609264,10609182,72.02,GCGGUGGUGGCCGAGCGGUCAAGGCGUAGGACUCCCGAUCCUAUUCUGGUAACAGAGCGCGGGUUCGAAUCCCGUCCACCGCA,****    NEW  HIT (duplicate of new hit #23)   ****,,2,0,BX284601/10609264-10609182,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,57,10141721,10141651,37.17,GUAUGACUAGCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCUCCGGUUCGGCCC,****    NEW  HIT  #57  ****,,2,0,BX284601/10141721-10141651,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,58,9571980,9571896,79.66,GCCCCGGUGGCCGAGCGGUCGAAGGCGUGAGACUUAUGAUCUCAUUGGGUUAAACCAGUCGCGGGUUCGAAUCCCGCCCGGGGCA,****    NEW  HIT (duplicate of new hit #10)   ****,,2,0,BX284601/9571980-9571896,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,59,9336540,9336469,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284601/9336540-9336469,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,60,9335548,9335477,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284601/9335548-9335477,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,61,9328089,9328018,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284601/9328089-9328018,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,62,9277053,9276982,75.12,GGCUGAGUGGUCUAGUGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGAUCGAUCCCCGGCUCAGCCC,****    NEW  HIT  #62  ****,,2,0,BX284601/9277053-9276982,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,63,9059380,9059308,73.71,GCUUCCGUGGCGCAAUAGGCAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCGGGAGCG,****    NEW  HIT  #63  ****,,2,0,BX284601/9059380-9059308,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,64,8789294,8789210,44.94,GUCGAGGUGGCCGAGUGGGGCAAGGCAUGAGUUUUCAGACUCAAAGGGCACUAGCCCGAUGCAGGUUCAAAUCCUGUCCUCGGCG,****    NEW  HIT  #64  ****,,2,0,BX284601/8789294-8789210,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,65,8538255,8538184,80.85,UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA,****    NEW  HIT (duplicate of new hit #31)   ****,,2,0,BX284601/8538255-8538184,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,66,7727016,7726940,50.39,GCUUUACCUGUGGGCGCAAUAGGCAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCGAGAGCG,****    NEW  HIT  #66  ****,,2,0,BX284601/7727016-7726940,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,67,7287489,7287417,77.84,GCCCGGUUAGCUCAGCCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT  #67  ****,,2,0,BX284601/7287489-7287417,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,68,6220956,6220885,20.37,GCACUCAUGGCGCAGUUGGGAACACUGGCGACUAACGGUCAGCAGGUCUCUGGUUCAAUCCCACUGUGUGCC,****    NEW  HIT  #68  ****,,2,0,BX284601/6220956-6220885,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,69,6171608,6171535,85.72,GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA,****    NEW  HIT (duplicate of new hit #7)   ****,,2,0,BX284601/6171608-6171535,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,70,6059371,6059290,65.77,GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA,****    NEW  HIT (duplicate of new hit #50)   ****,,2,0,BX284601/6059371-6059290,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,71,5863001,5862930,75.12,GGCUGAGUGGUCUAGUGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGAUCGAUCCCCGGCUCAGCCC,****    NEW  HIT (duplicate of new hit #62)   ****,,2,0,BX284601/5863001-5862930,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,72,5851291,5851219,75.88,GGCCGCGUGGCGCAAUGGAUAACGCGUCUGCCUACGGAGCAGAAGAUUGCAGGUUCGAAUCCUGCCGUGGUCG,****    NEW  HIT  #72  ****,,2,0,BX284601/5851291-5851219,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,73,3638926,3638854,74.17,GCUUCCGUAGCGCAGUAGGCAGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACCGGGAGCA,****    NEW  HIT  #73  ****,,2,0,BX284601/3638926-3638854,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,74,2272439,2272369,78.60,GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUGCA,****    NEW  HIT (duplicate of new hit #22)   ****,,2,0,BX284601/2272439-2272369,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,0,BX284601,0,emb|BX284601| Caenorhabditis elegans chromosome I; complete sequence.,1,75,946117,946046,71.81,GACUGCUUGGCGCAAUGGUAGCGCGUUCGACUCCAGAUCGAAAGGUUGGGCGUUCGAUCCGCUCAGUGGUCA,****    NEW  HIT  #75  ****,,2,0,BX284601/946117-946046,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,76,1331989,1332060,27.14,GCCAGCGUGGCCUAGUGGCUAAGAGUGAUGACUGGGGAGCACAAGACCGGGGUUCGAGUCCCCGUUCGGGUU,****    NEW  HIT  #76  ****,,2,0,BX284602/1331989-1332060,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,77,1334137,1334208,29.85,UCCAGCGUGGCCUAGUGGCUAAGAGGGAUGGCUAGUGAGCACAAGACCGGGGUUCGAGUCCCCGUGCGGGUU,****    NEW  HIT  #77  ****,,2,0,BX284602/1334137-1334208,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,78,1335743,1335814,27.89,GCCAGCGUGGCCUAGUGGCUAAGAGGGAUGGCUGGGGAGCACAAGACCGGGGUUCGAGUCCCCGUUCGGGUU,****    NEW  HIT  #78  ****,,2,0,BX284602/1335743-1335814,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,79,1367946,1368018,27.25,GAUUUUUGGCGCAGUCGGUAAGAGGGUUGAUUGGUACGCAAUUGGUCCGGGGUUCGACCCCCCGUUAUGGUCA,****    NEW  HIT  #79  ****,,2,0,BX284602/1367946-1368018,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,80,1478761,1478833,23.22,GUCCACUUGGCUCAACUGGUAAGAGGGAUGACUGGUACGCAAUAGGUCAGGGGUUCGACCCCCGGAGAGGUAA,****    NEW  HIT  #80  ****,,2,0,BX284602/1478761-1478833,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,81,1481923,1481995,20.47,GAACUUUUGGCUCAACUGGUAAGAGGGAUACCAAUGGAGAAAUAGGUCAUGGGUUCGAUUCCCAACGAGGCCA,****    NEW  HIT  #81  ****,,2,0,BX284602/1481923-1481995,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,82,1520040,1520121,80.42,GCAGUCAUGUCCGAGUGGUUAAGGAGAUUGACUAGAAAUCAAUUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG,****    NEW  HIT  #82  ****,,2,0,BX284602/1520040-1520121,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,83,2443051,2443116,24.30,GUCCCAAUGGCGCAGUGGGAUUAUGGCUGCACCCACAAGACCGGGGUUCGAUCCCCCGCUGGGUCA,****    NEW  HIT  #83  ****,,2,0,BX284602/2443051-2443116,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,84,2860339,2860420,65.77,GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA,****    NEW  HIT (duplicate of new hit #50)   ****,,2,0,BX284602/2860339-2860420,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,85,3062377,3062447,78.60,GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUGCA,****    NEW  HIT (duplicate of new hit #22)   ****,,2,0,BX284602/3062377-3062447,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,86,3267983,3268064,80.42,GCAGUCAUGUCCGAGUGGUUAAGGAGAUUGACUAGAAAUCAAUUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG,****    NEW  HIT (duplicate of new hit #82)   ****,,2,0,BX284602/3267983-3268064,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,87,4565374,4565445,69.85,GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA,****    NEW  HIT  #87  ****,,2,0,BX284602/4565374-4565445,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,88,5032751,5032824,85.72,GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA,****    NEW  HIT (duplicate of new hit #7)   ****,,2,0,BX284602/5032751-5032824,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,89,5237835,5237908,85.72,GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA,****    NEW  HIT (duplicate of new hit #7)   ****,,2,0,BX284602/5237835-5237908,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,90,5292299,5292370,69.85,GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA,****    NEW  HIT (duplicate of new hit #87)   ****,,2,0,BX284602/5292299-5292370,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,91,5293419,5293490,80.85,UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA,****    NEW  HIT (duplicate of new hit #31)   ****,,2,0,BX284602/5293419-5293490,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,92,6565189,6565261,77.08,GCCUCCUUAGCUCAGUUGGUAGAGCGUGAGACUUUUAAUCUUAAGGUCAGGGGUUCGAGUCCCCUAGGUGGCU,****    NEW  HIT  #92  ****,,2,0,BX284602/6565189-6565261,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,93,6721701,6721783,57.40,GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCAACCAGUAGCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA,****    NEW  HIT  #93  ****,,2,0,BX284602/6721701-6721783,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,94,6853129,6853210,70.98,GGUGAGAUGGCCGAGUGGUCUAAGGCGCUGGUUUUAGGCACCAGUCCCUCCGGGGGCGUGGGUUCGAAUCCCACUCUCAUCA,****    NEW  HIT  #94  ****,,2,0,BX284602/6853129-6853210,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,95,6898118,6898189,79.03,UCCCAUGUGGUCUAGUGGUUAGGAUUCGUGGUUUUCACCCACGCGGCCCGGGUUCGAUUCCCGGCAUGGGAA,****    NEW  HIT (duplicate of new hit #21)   ****,,2,0,BX284602/6898118-6898189,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,96,7001553,7001624,46.91,ACCUGUGUAGCUCAGGGGUAGAGCGCUCGCUUUGCAUGCGAGAAGUCUGGGGUUCGAUUCCCCAUACCUCCA,****    NEW  HIT  #96  ****,,2,0,BX284602/7001553-7001624,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,97,7003199,7003270,69.98,GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGUAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA,****    NEW  HIT  #97  ****,,2,0,BX284602/7003199-7003270,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,98,9404263,9404337,23.48,GACUUAAUAAGUUUGAAGUGGUUAGUACUCCACGUUGUGGCCGUGGCGACGCUAGUUCGAUUCCAGCAGCAGGCA,****    NEW  HIT  #98  ****,,2,0,BX284602/9404263-9404337,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,99,9566145,9566217,73.13,GGCCGCGUGGCCUAAUGGAUAAGGCACCAGACUUCGAAUCUGGGGAUUGCAGGUUCGAGUCCUGCCGUGGUCG,****    NEW  HIT (duplicate of new hit #13)   ****,,2,0,BX284602/9566145-9566217,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,100,9773558,9773632,43.43,GCCCGGUUAGCUCAGUCUACCGACUGCACCAGACUCUUAAUCUGGUUGUCGUGGGUUCGAGUCCCGCAUUGGGCU,****    NEW  HIT  #100  ****,,2,0,BX284602/9773558-9773632,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,101,10008923,10008995,23.31,UCUACUCUAGACACUAUGAGAGCGCGUCAGUCUCAUAUUCUGAAGGUCGUGAGUUCGAGCCUCACCGGGAGCA,****    NEW  HIT  #101  ****,,2,0,BX284602/10008923-10008995,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,102,10302301,10302372,77.11,GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGUUCGGCCC,****    NEW  HIT  #102  ****,,2,0,BX284602/10302301-10302372,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,103,10304913,10304984,77.11,GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGUUCGGCCC,****    NEW  HIT (duplicate of new hit #102)   ****,,2,0,BX284602/10304913-10304984,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,104,11334406,11334477,72.64,GGGGGUAUAGCUCAGGGGUAGAGCGCUCGCUUUGCAUGCGAGAAGUCUGGGGUUCGAUUCCCCAUACCUCCA,****    NEW  HIT  #104  ****,,2,0,BX284602/11334406-11334477,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,105,11441087,11441161,24.47,GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUCA,****    NEW  HIT  #105  ****,,2,0,BX284602/11441087-11441161,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,106,11959270,11959342,72.57,GGUCCUGUGGUGUAGUGGUUAUCACGUCUGCUUUACACGCAGUAGGCCGCCGGUUCGAUCCCGGCCAGGACCU,****    NEW  HIT  #106  ****,,2,0,BX284602/11959270-11959342,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,107,12362343,12362416,85.72,GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA,****    NEW  HIT (duplicate of new hit #7)   ****,,2,0,BX284602/12362343-12362416,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,108,12494635,12494708,85.72,GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA,****    NEW  HIT (duplicate of new hit #7)   ****,,2,0,BX284602/12494635-12494708,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,109,12539491,12539562,63.90,GACUGCUUGGCGCAAUGAUAGCGCGUUCGACUCCAGAUCGAAAGGUUGGGCGUUCGAUCCGCUCAGUGGUCA,****    NEW  HIT  #109  ****,,2,0,BX284602/12539491-12539562,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,110,12542528,12542599,69.85,GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA,****    NEW  HIT (duplicate of new hit #87)   ****,,2,0,BX284602/12542528-12542599,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,111,12678201,12678272,72.64,GGGGGUAUAGCUCAGGGGUAGAGCGCUCGCUUUGCAUGCGAGAAGUCUGGGGUUCGAUUCCCCAUACCUCCA,****    NEW  HIT (duplicate of new hit #104)   ****,,2,0,BX284602/12678201-12678272,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,0,112,14616961,14617030,24.20,CUCGCGUGGCGCAGGCGGUAGCGCAUUUCGCUGUUGAUCAAGAGGCCACAGGUUCGCCUCCCGUGCGAUG,****    NEW  HIT  #112  ****,,2,0,BX284602/14616961-14617030,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,113,14635296,14635215,68.79,GGUGAGAUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCAUCA,****    NEW  HIT  #113  ****,,2,0,BX284602/14635296-14635215,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,114,14474793,14474722,74.76,GGUUCCAUGGUGUAGCGGUUAGCACUCAGGACUUUGAAUCCUGCGACCCGAGUUCAAAUCUCGGUGGAACCU,****    NEW  HIT  #114  ****,,2,0,BX284602/14474793-14474722,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,115,12728712,12728641,54.71,GCUCGCGUGGCCUAAUGGAUAAGGCACCGGACUCCGGAACCGGGAAUGGGGGUUCAAGUCCCUCCGCGAGCU,****    NEW  HIT  #115  ****,,2,0,BX284602/12728712-12728641,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,116,12669956,12669884,21.11,CUGGAGGUGGCGCAACCGGUAACAGAGCUGCCUGUGGCGCAGAAGGUCACAGGUUCAAGCCCCGUCUAGAGGA,****    NEW  HIT  #116  ****,,2,0,BX284602/12669956-12669884,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,117,12666120,12666049,27.76,GCGCGCAUGGUUCAGGCGGUAAGAGGUAGGGCUGCGGCUCAGAGGUCCGGGGUUCGACUCCCAGUGGGGGUA,****    NEW  HIT  #117  ****,,2,0,BX284602/12666120-12666049,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,118,12541654,12541582,77.08,GCCUCCUUAGCUCAGUUGGUAGAGCGUGAGACUUUUAAUCUUAAGGUCAGGGGUUCGAGUCCCCUAGGUGGCU,****    NEW  HIT (duplicate of new hit #92)   ****,,2,0,BX284602/12541654-12541582,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,119,12541905,12541824,65.77,GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA,****    NEW  HIT (duplicate of new hit #50)   ****,,2,0,BX284602/12541905-12541824,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,120,12435545,12435474,70.44,AGCAGCGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGGUGGAUCGAAACCACUCGCUGCUA,****    NEW  HIT (duplicate of new hit #34)   ****,,2,0,BX284602/12435545-12435474,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,121,12349601,12349530,22.62,GGCGUCGUGGCUCAGUCGGUAAGCGGUUGGGCUAUGAAGCAAAAGGUCCCGGGUUCGGAUCCCCGGAAGCUU,****    NEW  HIT  #121  ****,,2,0,BX284602/12349601-12349530,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,122,12345844,12345774,21.59,GCGUGCGUGGCUCAGUGGGUAAGAGGUUUGGCUGCUAAGCAGAAGGUCACAGGUUCGAGUUCUCGAGGUCG,****    NEW  HIT  #122  ****,,2,0,BX284602/12345844-12345774,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,123,11518842,11518757,27.18,GCGUCCGUGGCGAAUCACCUGUGUAAGGAGAUUGACUAGAAAUCAAUUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG,****    NEW  HIT  #123  ****,,2,0,BX284602/11518842-11518757,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,124,11442221,11442147,20.62,GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUUA,****    NEW  HIT (duplicate of new hit #0)   ****,,2,0,BX284602/11442221-11442147,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,125,11333982,11333911,72.64,GGGGGUAUAGCUCAGGGGUAGAGCGCUCGCUUUGCAUGCGAGAAGUCUGGGGUUCGAUUCCCCAUACCUCCA,****    NEW  HIT (duplicate of new hit #104)   ****,,2,0,BX284602/11333982-11333911,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,126,11157779,11157707,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284602/11157779-11157707,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,127,10304744,10304673,70.12,GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCUGGUUCAAUCCCCGGUUCGGCCC,****    NEW  HIT  #127  ****,,2,0,BX284602/10304744-10304673,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,128,10302132,10302061,71.88,GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGCUCGGCCC,****    NEW  HIT  #128  ****,,2,0,BX284602/10302132-10302061,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,129,9713200,9713128,80.69,GCCUCGAUAGCUCAGUUGGGAGAGCGCACGACUGAAGAUCGUGAGGUCACCAGUUCGAUCCUGGUUCGGGGCA,****    NEW  HIT  #129  ****,,2,0,BX284602/9713200-9713128,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,130,9211791,9211708,70.54,CAGUCGAUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAGUCAGUGGUUAUCCUUAGGUCGCUGGUUCGAAUCCGGCUCGACGGA,****    NEW  HIT  #130  ****,,2,0,BX284602/9211791-9211708,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,131,8631957,8631874,69.13,AGCACGAUGGCCGAGUGGUUAAGGCGUUGGCCUUAAGUUCCAAUGGUGGAUAACACCGCGUGGGUUCGAACCCCACUCGUGCUA,****    NEW  HIT  #131  ****,,2,0,BX284602/8631957-8631874,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,132,7756937,7756866,74.76,GGUUCCAUGGUGUAGCGGUUAGCACUCAGGACUUUGAAUCCUGCGACCCGAGUUCAAAUCUCGGUGGAACCU,****    NEW  HIT (duplicate of new hit #114)   ****,,2,0,BX284602/7756937-7756866,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,133,7002990,7002919,69.85,GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA,****    NEW  HIT (duplicate of new hit #87)   ****,,2,0,BX284602/7002990-7002919,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,134,6358381,6358310,20.69,GCCGCUGUGGUCAAGUGGCUAAAAAUUUUGCCAUUCACGUAAACGUUCGCUGGUUCAAUCCCUGCGGUGAUA,****    NEW  HIT  #134  ****,,2,0,BX284602/6358381-6358310,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,135,5782243,5782173,67.58,GCAUCGGUGGUUCAGUGGUAGAAAGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUACA,****    NEW  HIT  #135  ****,,2,0,BX284602/5782243-5782173,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,136,5772960,5772877,78.70,AGCACGAUGGCCGAGUGGUUAAGGCGUUGGACUUAAGUUCCAAUGGUGGAUAACACCUCGUGGGUUCGAACCCCACUCGUGCUA,****    NEW  HIT  #136  ****,,2,0,BX284602/5772960-5772877,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,137,5577239,5577167,80.90,GGUCCUAUGGUGUAGUGGUUAUCACGUCUGCUUUACACGCAGAAGAUCGCCGGUUCGAACCCGGCUAGGACCU,****    NEW  HIT  #137  ****,,2,0,BX284602/5577239-5577167,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,138,5057501,5057428,85.72,GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA,****    NEW  HIT (duplicate of new hit #7)   ****,,2,0,BX284602/5057501-5057428,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,139,4565072,4565001,47.51,GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCAUUUUCCGUU,****    NEW  HIT  #139  ****,,2,0,BX284602/4565072-4565001,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,140,3567673,3567602,85.44,GCCUCAUUGGCUCAGUGGCAGAGCGUCUGUCUAGUAAACAGAAGGUCGCUGGUUCGAUUCCAGCAUGAGGCA,****    NEW  HIT  #140  ****,,2,0,BX284602/3567673-3567602,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,141,3567828,3567756,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284602/3567828-3567756,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,142,3521550,3521479,75.43,GCCUGCGUAGUAUAGUGGUUAGUACUCCACGUUGUGGCCGUGGCGACGCUGGUUCGAUUCCAGCCGCAGGCA,****    NEW  HIT  #142  ****,,2,0,BX284602/3521550-3521479,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,143,3519150,3519079,82.42,GCCUCAUUGGCUCAGUGGCAGAGCGUCUGUCUAGUAAACAGAAGGUCGCUGGUUCGAUUCCAGCAUGAGGCC,****    NEW  HIT  #143  ****,,2,0,BX284602/3519150-3519079,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,144,3519315,3519243,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284602/3519315-3519243,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,145,3439283,3439212,85.44,GCCUCAUUGGCUCAGUGGCAGAGCGUCUGUCUAGUAAACAGAAGGUCGCUGGUUCGAUUCCAGCAUGAGGCA,****    NEW  HIT (duplicate of new hit #140)   ****,,2,0,BX284602/3439283-3439212,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,146,3439459,3439387,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284602/3439459-3439387,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,147,3062270,3062200,78.60,GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUGCA,****    NEW  HIT (duplicate of new hit #22)   ****,,2,0,BX284602/3062270-3062200,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,148,2861628,2861547,65.77,GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA,****    NEW  HIT (duplicate of new hit #50)   ****,,2,0,BX284602/2861628-2861547,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,149,2736355,2736274,65.77,GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA,****    NEW  HIT (duplicate of new hit #50)   ****,,2,0,BX284602/2736355-2736274,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,150,2735873,2735792,65.77,GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA,****    NEW  HIT (duplicate of new hit #50)   ****,,2,0,BX284602/2735873-2735792,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,151,1476083,1476011,22.51,GAUUUUUUGGCUCAGUCGGUAAGAGGUAUGACUGGUAAGCAAUAGGUCCGGGGUUCGACCCCCAGUGGUGGUA,****    NEW  HIT  #151  ****,,2,0,BX284602/1476083-1476011,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,152,1476235,1476161,31.32,GUUUUUGGCUCAGUCGGUAAGAUGAGUGGCUGGUAACCAAUAGGUCCGGGGUUCGACCCCCGGUGGUGGAAAACU,****    NEW  HIT  #152  ****,,2,0,BX284602/1476235-1476161,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,153,1333327,1333256,25.91,GCCAGGGUGGCCUAGUGGCUAACAGGGAUGGCUGGUGAGCACAAGACCGGGGUUCGAGUCCCCGUUCGGGUU,****    NEW  HIT  #153  ****,,2,0,BX284602/1333327-1333256,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,154,1102437,1102365,29.12,GAGUUUUGGCUCGACUGGUAAGAGGUGUGACUUGUGAUCAAUAGGUCCGGGGUUCGACCCCUCGUAAGGGUCA,****    NEW  HIT  #154  ****,,2,0,BX284602/1102437-1102365,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,155,1102129,1102058,25.23,GAGUUUUGGCUCAACUGGUAAGAGGGUUGACUUGUGGGCAAUAGGUCCGGGGUUCGACCCCCGUAAGGGUCA,****    NEW  HIT  #155  ****,,2,0,BX284602/1102129-1102058,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,1,BX284602,0,emb|BX284602| Caenorhabditis elegans chromosome II; complete sequence.,1,156,1088521,1088449,20.41,UGCUCCAUGGCUCAGCCGGUAAGAGGGAUGACUGGUAGGCAAGCGACCGGGGUUCGACCCCCGGUGGUGGUAA,****    NEW  HIT  #156  ****,,2,0,BX284602/1088521-1088449,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,157,535380,535463,75.25,CCGUCGAUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAGUUAGCAGGUAUCCUUAGGUCACUGGUUCGAAUCCGGUUCGACGGA,****    NEW  HIT  #157  ****,,2,0,BX284603/535380-535463,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,158,1040664,1040734,21.29,GCACCGGUGGCUCAGUUGGUAACAGGGAUGGCUGCCGAUCAGAAGACUGGGGUUCGAUCCCCGCUGCCGCA,****    NEW  HIT  #158  ****,,2,0,BX284603/1040664-1040734,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,159,1041541,1041611,22.59,GCACCGAUGGCUCAGUGGGUAACACAGAUGGCUGCCAAGCACAAGACCGGGGUUCGAUCCCCGCUGUGGCA,****    NEW  HIT  #159  ****,,2,0,BX284603/1041541-1041611,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,160,1042574,1042644,22.72,GCACCGGUGGCUCAGUUGGUUACACGGAUGGCUGCCAAGCACAAGACCAGGGUUCGAUCCCCGCGGUGGCA,****    NEW  HIT  #160  ****,,2,0,BX284603/1042574-1042644,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,161,1044985,1045055,20.50,GCACCGGUGGCUCAGUAGGUAACAGGGAUGGUUGGCAAGCAACAGACCGGGGUUCGACCCCCGCUGUGGCG,****    NEW  HIT  #161  ****,,2,0,BX284603/1044985-1045055,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,162,1046930,1047000,26.71,GCACCCGUAGCCUAGUGGAUAGUGGGGAUGGCUUGGAAUCAUAAGACCGGGGUUCGACCCCCGGCACGGCA,****    NEW  HIT  #162  ****,,2,0,BX284603/1046930-1047000,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,163,1047818,1047889,24.18,GCACCUGUGGCGCAGUGGGUAACAUGGAUGGCUGCCAAUCAGACGACCAGGGUUCGACCCCCCGCUUGGUCG,****    NEW  HIT  #163  ****,,2,0,BX284603/1047818-1047889,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,164,1424481,1424552,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284603/1424481-1424552,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,165,1575420,1575492,29.58,ACCCCGUGGCGCAGUGGCUAACAGGCUUGACUUCGGAGCAAAUGGUCCCGGGGUUCGAGUCCCCGCAGUGGUG,****    NEW  HIT  #165  ****,,2,0,BX284603/1575420-1575492,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,166,1575862,1575934,40.39,GCACCGGUGGCGCAGUGGCUAACAGGCUUGACUUCGGAGCAAAAGGUCCGGGGUUCGAGUCCCCGUGGGAGUA,****    NEW  HIT  #166  ****,,2,0,BX284603/1575862-1575934,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,167,1577091,1577163,39.91,GCACCGGUGGCGCAGUGGCUAAGAGGUUUGCCUUUGGAGCAAAAGGUCGGGGGUUCGAGUCCCCGUGGGGGUA,****    NEW  HIT  #167  ****,,2,0,BX284603/1577091-1577163,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,168,1577401,1577472,34.93,AAACCGGUGGCGCAGUGGCUAAGAGGUUUGCCUUUGGAGCAAAAGGUCGGGGUUCGAGUCCCCGUGGGGGUA,****    NEW  HIT  #168  ****,,2,0,BX284603/1577401-1577472,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,169,1604571,1604642,70.44,AGCAGCGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGGUGGAUCGAAACCACUCGCUGCUA,****    NEW  HIT (duplicate of new hit #34)   ****,,2,0,BX284603/1604571-1604642,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,170,1998072,1998145,23.30,UACUGCGUGGCGCAGUGAUUAACGCGUUUGCCUGCGGCUCCGAAGGUCAUGGGUUCGACCCCACGUGAGGGUAA,****    NEW  HIT  #170  ****,,2,0,BX284603/1998072-1998145,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,171,2032506,2032577,80.85,UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA,****    NEW  HIT (duplicate of new hit #31)   ****,,2,0,BX284603/2032506-2032577,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,172,2711701,2711772,77.11,GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGUUCGGCCC,****    NEW  HIT (duplicate of new hit #102)   ****,,2,0,BX284603/2711701-2711772,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,173,2879905,2879978,21.15,GCGCGCGUGGCGCAGUCGGUAAGAUGUCAGACUAUGACCCAGAAGGUCACAGGUUCGAUUCUUUGUCGAAGGAU,****    NEW  HIT  #173  ****,,2,0,BX284603/2879905-2879978,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,174,3099564,3099635,21.73,GAGUUUUUAGCCUAGUGGCUAAUGCGGAUGGCUAAGGCCCACAAGACCGGGGUUCGAGUCCCCACCCGGGCA,****    NEW  HIT  #174  ****,,2,0,BX284603/3099564-3099635,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,175,3101075,3101146,29.52,AACUUUUGGCGCAGUGGCUAACAGGGAUGGCUGAGACCCAUAAGACCGGGGUUCGAAUCCCCGCUGUGGUGA,****    NEW  HIT  #175  ****,,2,0,BX284603/3101075-3101146,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,176,3103003,3103075,21.78,GACUUUUUGGCCUAGUGGCUAACACGGAUGGCUGAGACACACAAGACCGGGGUUCGAUUCCCCGCUUGCGUCA,****    NEW  HIT  #176  ****,,2,0,BX284603/3103003-3103075,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,177,3105132,3105204,23.87,GAACGUUUGGCGUAGUGGCUAACACGGAUGGCUGGGACUCACAAGACCGGGGUUCGAGUCCCCGCUGUGGCCA,****    NEW  HIT  #177  ****,,2,0,BX284603/3105132-3105204,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,178,3110788,3110860,25.63,GAAUUUUUGGCCUAGUGGCUAAGAGGGAUGGCUGGGGCCCACAAGACCGGGGUUCGAGUCCCUGAGGGGGUCA,****    NEW  HIT  #178  ****,,2,0,BX284603/3110788-3110860,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,179,3189658,3189731,25.03,UGGUUUUUGGCCUAGUGGCUAACACGGAUGGCUGAGACCCACAAGACCGGGGUUCGAGUCCCCGCUGUGGCUAA,****    NEW  HIT  #179  ****,,2,0,BX284603/3189658-3189731,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,180,3191640,3191709,27.06,GGAUUUGUGGCCUAGUGGAUAACACGGAUGACUGUCAAGCACAAGACCGGGGUUCGACUCCCCGCUGUCA,****    NEW  HIT  #180  ****,,2,0,BX284603/3191640-3191709,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,181,3195428,3195509,48.85,CCUGUGAGCUCAGUUGGUAGAGCGGAGGACUGUAGAGUCAGCAGGUAUCCUUAGGUCACUGGUUCGAAUCCGGUUCGACGGA,****    NEW  HIT  #181  ****,,2,0,BX284603/3195428-3195509,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,182,3389524,3389596,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284603/3389524-3389596,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,183,4362493,4362612,61.12,GCACGGAUGGCCGAGUGGUCUAAGGCGCCAGACUCAAGCGUAACGCUUACCUCAAGUUCGAGGUCUACUGGGUGUUCUGGUACUCGUAUGGGUGCGUGGGUUCGAAUCCCACUUCGUGCA,****    NEW  HIT  #183  ****,,2,0,BX284603/4362493-4362612,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,184,5305862,5305933,78.76,GCCCUUAUAGCUCAGUGGUAGAGCGUUGGUCUUGUAAACCAAAGGUCCGUAGUUCAAUCCUGCGUGGGGGCA,****    NEW  HIT (duplicate of new hit #43)   ****,,2,0,BX284603/5305862-5305933,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,185,5762233,5762303,78.60,GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUGCA,****    NEW  HIT (duplicate of new hit #22)   ****,,2,0,BX284603/5762233-5762303,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,186,5769853,5769934,44.20,GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCGUUCCAUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUAA,****    NEW  HIT  #186  ****,,2,0,BX284603/5769853-5769934,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,187,5790187,5790251,27.93,GUCGCGGUUUAUCUGUGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUG,****    NEW  HIT  #187  ****,,2,0,BX284603/5790187-5790251,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,188,6153330,6153402,41.23,GCUUUACCUGUGCAGUUGGGAGAGCGUACGACUGAAGAUCGUAAGGUCACCAGUUCGAUCCUGGUUUGGGGCA,****    NEW  HIT  #188  ****,,2,0,BX284603/6153330-6153402,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,189,6158905,6158990,54.59,GUGGUUAAGAAUGUCCGAGUGGUUAAGGAGUUUGACUCGAAAUCAAAUGGGCUCUGUCCGCGUAGGUUCGAAUCCUGCUGACUGCG,****    NEW  HIT  #189  ****,,2,0,BX284603/6158905-6158990,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,190,6158718,6158799,80.42,GCAGUCAUGUCCGAGUGGUUAAGGAGAUUGACUAGAAAUCAAUUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG,****    NEW  HIT (duplicate of new hit #82)   ****,,2,0,BX284603/6158718-6158799,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,191,6805500,6805572,73.71,GCUUCCGUGGCGCAAUAGGCAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCGGGAGCG,****    NEW  HIT (duplicate of new hit #63)   ****,,2,0,BX284603/6805500-6805572,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,192,6888738,6888809,73.28,GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,BX284603/6888738-6888809,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,193,8069326,8069397,70.20,GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUGAAUCCCCGGUUCGGCCC,****    NEW  HIT  #193  ****,,2,0,BX284603/8069326-8069397,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,194,8106573,8106645,74.17,GCUUCCGUAGCGCAGUAGGCAGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACCGGGAGCA,****    NEW  HIT (duplicate of new hit #73)   ****,,2,0,BX284603/8106573-8106645,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,195,8109523,8109644,61.51,GCACGGAUGGCCGAGUGGUCUAAGGCGCCAGACUCAAGCGUACAUUGCUUGCCUCAAGUUCGAGGUUAACUGGGUGUUCUGGUACUCGUAUGGGUGCGUGGGUUCGAAUCCCACUUCGUGCA,****    NEW  HIT  #195  ****,,2,0,BX284603/8109523-8109644,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,196,8473377,8473449,80.29,GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU,****    NEW  HIT (duplicate of new hit #6)   ****,,2,0,BX284603/8473377-8473449,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,197,8639205,8639324,59.98,GCACGGAUGGCCGAGUGGUCUAAGGCGCCAGACUCAAGCGAAAUGCUUGCCUCAUGCUCGAGGUCGACUGGGUGUUCUGGUACUCGUAUGGGUGCGUGGGUUCGAAUCCCACUUCGUGCA,****    NEW  HIT  #197  ****,,2,0,BX284603/8639205-8639324,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,198,8646066,8646147,80.42,GCAGUCAUGUCCGAGUGGUUAAGGAGAUUGACUAGAAAUCAAUUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG,****    NEW  HIT (duplicate of new hit #82)   ****,,2,0,BX284603/8646066-8646147,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,199,8652953,8653025,80.30,GCCUCGAUAGCUCAGUUGGGAGAGCGUACGACUGAAGAUCGUAAGGUCACCAGUUCGAUCCUGGUUCGGGGCA,****    NEW  HIT  #199  ****,,2,0,BX284603/8652953-8653025,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,200,11066855,11066926,77.11,GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGUUCGGCCC,****    NEW  HIT (duplicate of new hit #102)   ****,,2,0,BX284603/11066855-11066926,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,201,11352856,11352928,77.09,GGUCUCGUGGUGUAGUGGUUAUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCA,****    NEW  HIT (duplicate of new hit #33)   ****,,2,0,BX284603/11352856-11352928,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,2,BX284603,0,emb|BX284603| Caenorhabditis elegans chromosome III; complete sequence.,0,202,11353455,11353527,77.09,GGUCUCGUGGUGUAGUGGUUAUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCA,****    NEW  HIT (duplicate of new hit #33)   ****,,2,0,BX284603/11353455-11353527,/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta,,,,,,
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec ,data/tRNAscan/tRNAscan-TRNA2-euk.cm (global),/projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_