Params: ./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-euk.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 specfile data/TRNA2-euk.filterspec Build: release Host: gattaca.cs.washington.edu pid: 3344 ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----specfile: 2struct-str data/tRNAscan/tRNAscan-TRNA2-euk-type1-Ecoli.bin 1/remember-nuc,15,r-A-C-G-U-_,34,r-AG-C_-U,32,r-AU_-CG,51,l-ACGU-_,50,r-ACGU-_,67,l-ACU_-G,65,r-AG-U_-C 2struct-str data/tRNAscan/tRNAscan-TRNA2-euk-type1-Ecoli.bin 1/remember-nuc,16,l-AG_-CU,15,r-A-C-G-U-_,14,r-CU_-A-G,34,r-A_-C-G-U,32,r-A_-C-G-U,31,l-AG_-CU,54,l-ACGU-_,51,l-ACGU-_,50,r-ACGU-_,49,l-ACGU-_,48,r-ACGU-_,67,l-ACU_-G,66,r-AGU_-C,65,l-ACU-G_,64,r-ACU-G_,63,r-AG_-CU 2struct-str data/tRNAscan/tRNAscan-TRNA2-euk-type1-Ecoli.bin 1/sub,63,48/sub,48,32/sub,13,63 2struct-str data/tRNAscan/tRNAscan-TRNA2-euk-type1-Ecoli.bin 1/sub,63,48/sub,30,500/sub,13,63 Exploded HMM has 1149 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-euk.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,15,r-A-C-G-U-_/remember-nuc,34,r-AG-C_-U/remember-nuc,32,r-AU_-CG/remember-nuc,51,l-ACGU-_/remember-nuc,50,r-ACGU-_/remember-nuc,67,l-ACU_-G/remember-nuc,65,r-AG-U_-C Exploded HMM has 5542 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-euk.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,16,l-AG_-CU/remember-nuc,15,r-A-C-G-U-_/remember-nuc,14,r-CU_-A-G/remember-nuc,34,r-A_-C-G-U/remember-nuc,32,r-A_-C-G-U/remember-nuc,31,l-AG_-CU/remember-nuc,54,l-ACGU-_/remember-nuc,51,l-ACGU-_/remember-nuc,50,r-ACGU-_/remember-nuc,49,l-ACGU-_/remember-nuc,48,r-ACGU-_/remember-nuc,67,l-ACU_-G/remember-nuc,66,r-AGU_-C/remember-nuc,65,l-ACU-G_/remember-nuc,64,r-ACU-G_/remember-nuc,63,r-AG_-CU ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-euk.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,63,48/sub,48,32/sub,13,63 ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-euk.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-euk.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,63,48/sub,30,500/sub,13,63 ----cmFile: data/tRNAscan/tRNAscan-TRNA2-euk.cm (global) ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUUA hit 0 : 185335 185409 (fwd) 20.62 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 + :C+ UGG: :AGU GGU A: :CG: G:CUCU++A:C :AG 185335 GGUUCGGUGGUCGAGU-GGUgAACGCGUUCGCCUCUUGAGCAGAAG-------------- 185379 >>>>,.,<<<<<_______>>>>..>))))))): 60 ggccG.CcCgGGUUCGAaUCCcG..gcgggGgCa 90 + ::GGGUUCG +UCCC: : +G: + A 185380 ----UuUGUGGGUUCGGUUCCCAuaCAUGGUUUA 185409 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCCGUUCUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCCUCUCCGGAGGGCGCAGGUUCGAAUCCUGCGGACGGCA hit 1 : 754682 754765 (fwd) 72.47 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 GCC::::UGGCC:AGU GGU +A:GGCGCUG:: UC + ::CAG+ :::C U+ G 754682 GCCGUUCUGGCCGAGU-GGUcuAAGGCGCUGCGUUCAGGUCGCAGU-CCUC---UCCG-- 754734 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 G:::GC:C:GGUUCGAAUCC:G:::::GGCA 754735 -GAGGGCGCAGGUUCGAAUCCUGCGGACGGCA 754765 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: CCGCUUGUAGUCUAGUGGUUAACACGCUUCAGCUCUAAACAAUAGGUCCGGGGUUCGAUUCCUUGCAAGAUGA hit 2 : 803802 803874 (fwd) 36.48 bits (((((((,,<<<<_______._>>>>,<<<<.<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugG.aCUcuaAAuCcagAGggccugcUUUggg 58 : C::GU+G: AGU GGU+A :CG U: :CUCUAAA: :A AG 803802 CCGCUUGUAGUCUAGU-GGUuAACACGCUUCaGCUCUAAAC-AAUAG------------- 803846 >>>>>,.,<<<<<_______>>>>>))))))): 59 gggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CC GGUUCGA+UCC GC::G :A 803847 -----GuCCGGGGUUCGAUUCCUUGCAAGAUGA 803874 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGCCUUGUGGCCUAAUGGAUAAGGCGUCUGACUUCUAAUCAGAAGAUUGCAGGUUCGAGCCCUGCCUGGGUCA hit 3 : 1447139 1447211 (fwd) 72.91 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+CC: GUGGCC A U GG +A GGCG:::GACU +AAUC:::AG 1447139 GGCCUUGUGGCCUAAU-GGAuAAGGCGUCUGACUUCUAAUCAGAAG-------------- 1447183 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + :C:GGUUCGA CC:G:C :GG+CA 1447184 ----AuUGCAGGUUCGAGCCCUGCCUGGGUCA 1447211 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGCCUUGUGGCCUAAUGGAUAAGGCGUCUGACUUCUAAUCAGAAGAUUGCAGGUUCGAGCCCUGCCUGGGUCA hit 4 : 1575721 1575793 (fwd) 72.91 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+CC: GUGGCC A U GG +A GGCG:::GACU +AAUC:::AG 1575721 GGCCUUGUGGCCUAAU-GGAuAAGGCGUCUGACUUCUAAUCAGAAG-------------- 1575765 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + :C:GGUUCGA CC:G:C :GG+CA 1575766 ----AuUGCAGGUUCGAGCCCUGCCUGGGUCA 1575793 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: CCGUCGAUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAGUUCGCAGAUAUCCUUAGGUCACUGGUUCGAAUCCGGUUCGACGGA hit 5 : 6143965 6144048 (fwd) 75.12 bits (((((((,,<<<<________>>>>,<<<<<______..........._>>>>>,,<<<< 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaA...........AuCcagAGggcc 49 :C::C::U+GC:CAGUUGGUAG:GCG::GGACU UA++ ++ + ++AUCC::AG 6143965 CCGUCGAUAGCUCAGUUGGUAGAGCGGAGGACUGUAGaguucgcagauAUCCUUAG---- 6144020 <<<____>>>>>>>,.,<<<<<_______>>>>>))))))): 50 ugcUUUggggggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGAAUCC:G:::G::G:A 6144021 --------------GuCACUGGUUCGAAUCCGGUUCGACGGA 6144048 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 6 : 6144732 6144804 (fwd) 80.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC C::GACUCU+AAUC::G+ 6144732 GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 6144776 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 6144777 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 6144804 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA hit 7 : 6172255 6172328 (fwd) 85.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CC:U+GC:CAGU+GGU+AG:GCG::GG CU +AA CC::AG 6172255 GCCGCCAUAGCUCAGUCGGUuAGAGCGUGGGUCUAAUAAGCCCAAG-------------- 6172300 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA CC:G::GG:GGCA 6172301 ----GuCGCAGGUUCGACCCCUGCUGGCGGCA 6172328 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGUGGCAGAGCAUUCGACUGCAGAUCGAGAGGUCCCUGGUUCAACUCCGGGUGCCCCCU hit 8 : 6789866 6789937 (fwd) 70.50 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G::::::U+GC:CAGU GG AG:GC U:GACU A+AUC:A AG 6789866 GGGGGUAUAGCUCAGU-GGCAGAGCAUUCGACUGCAGAUCGAGAG--------------- 6789909 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCC:GGUUC A UCC:GG::::::C 6789910 ---GuCCCUGGUUCAACUCCGGGUGCCCCCU 6789937 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUUA hit 9 : 7850971 7851045 (fwd) 20.62 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 + :C+ UGG: :AGU GGU A: :CG: G:CUCU++A:C :AG 7850971 GGUUCGGUGGUCGAGU-GGUgAACGCGUUCGCCUCUUGAGCAGAAG-------------- 7851015 >>>>,.,<<<<<_______>>>>..>))))))): 60 ggccG.CcCgGGUUCGAaUCCcG..gcgggGgCa 90 + ::GGGUUCG +UCCC: : +G: + A 7851016 ----UuUGUGGGUUCGGUUCCCAuaCAUGGUUUA 7851045 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCCCCGGUGGCCGAGCGGUCGAAGGCGUGAGACUUAUGAUCUCAUUGGGUUAAACCAGUCGCGGGUUCGAAUCCCGCCCGGGGCA hit 10 : 7968894 7968978 (fwd) 79.66 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 GCCCC:GUGGCC:AG GGU A:GGCG:::GACU ++AUC:::+ :G: UU + 7968894 GCCCCGGUGGCCGAGC-GGUcgAAGGCGUGAGACUUAUGAUCUCAU-UGGG---UUAA-- 7968946 >>>>>,.,<<<<<_______>>>>>))))))): 59 gggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 :C:G+C:CGGGUUCGAAUCCCG:C:GGGGCA 7968947 -ACCAGuCGCGGGUUCGAAUCCCGCCCGGGGCA 7968978 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCACACAUGGUU hit 11 : 8799410 8799482 (fwd) 24.15 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 C : UGG: :AGU GGU A: :CG: G:CUCU++A:C :AG 8799410 GCUUCGGUGGUCGAGU-GGUgAACGCGUUCGCCUCUUGAGCAGAAG-------------- 8799454 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + ::GGGUUCG +UCCC:: : G 8799455 ----UuUGUGGGUUCGGUUCCCACACAUGGUU 8799482 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GUGUCCUUAGCUCAGUUGGUAGAGCGUGAGACUUUUAAUCUUAAGGUCAGGGGUUCGAGUCCCCUAGGUGGCU hit 12 : 8961224 8961296 (fwd) 65.31 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G CC:U+GC:CAGUUGGUAG:GCG: :GACU U+AAUC: :AG 8961224 GUGUCCUUAGCUCAGUUGGUAGAGCGUGAGACUUUUAAUCUUAAG--------------- 8961268 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA UCCC:::GG C 8961269 ---GuCAGGGGUUCGAGUCCCCUAGGUGGCU 8961296 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGCCGCGUGGCCUAAUGGAUAAGGCACCAGACUUCGAAUCUGGGGAUUGCAGGUUCGAGUCCUGCCGUGGUCG hit 13 : 9275176 9275248 (fwd) 73.13 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+CC+CGUGGCC A U GG +A GGC C::GACU AAUC::G G 9275176 GGCCGCGUGGCCUAAU-GGAuAAGGCACCAGACUUCGAAUCUGGGG-------------- 9275220 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + :C:GGUUCGA UCC:G:CG+GG+C+ 9275221 ----AuUGCAGGUUCGAGUCCUGCCGUGGUCG 9275248 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 14 : 9328231 9328302 (fwd) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 9328231 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 9328275 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 9328276 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 9328302 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 15 : 9335690 9335761 (fwd) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 9335690 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 9335734 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 9335735 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 9335761 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 16 : 9336683 9336754 (fwd) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 9336683 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 9336727 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 9336728 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 9336754 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCCCCGGUGGCCGAGCGGUCGAAGGCGUGAGACUUGUUCUCAUUGGGUUAAACCAGUCGCGGGUUCGAAUCCCGCCCGGGGCA hit 17 : 9566845 9566927 (fwd) 67.89 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 GCCCC:GUGGCC:AG GGU A:GGCG:::GACU + UC:::+ :G: UU + 9566845 GCCCCGGUGGCCGAGC-GGUcgAAGGCGUGAGACUUGU--UCUCAU-UGGG---UUAA-- 9566895 >>>>>,.,<<<<<_______>>>>>))))))): 59 gggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 :C:G+C:CGGGUUCGAAUCCCG:C:GGGGCA 9566896 -ACCAGuCGCGGGUUCGAAUCCCGCCCGGGGCA 9566927 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCCCCGGUGGCCGAGCGGUCGAAGGCGUGAGACUUAUGAUCUCAUUGGGUUAAACCAGUCGCGGGUUCGAAUCCCGCCCGGGGCA hit 18 : 9570406 9570490 (fwd) 79.66 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 GCCCC:GUGGCC:AG GGU A:GGCG:::GACU ++AUC:::+ :G: UU + 9570406 GCCCCGGUGGCCGAGC-GGUcgAAGGCGUGAGACUUAUGAUCUCAU-UGGG---UUAA-- 9570458 >>>>>,.,<<<<<_______>>>>>))))))): 59 gggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 :C:G+C:CGGGUUCGAAUCCCG:C:GGGGCA 9570459 -ACCAGuCGCGGGUUCGAAUCCCGCCCGGGGCA 9570490 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCAGCGAUGUCCGAGUGGUUAAGGAGUUGGACUUGAAAUCCAAUGGGCUUUGCCCGCGUAGGUUCGAACCCUGCUCGCUGCG hit 19 : 9613809 9613890 (fwd) 83.30 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC::C::UG:CC:AGU GGU+A:GG:G:UGGACU AAAUCCA:+ GG:C UUU 9613809 GCAGCGAUGUCCGAGU-GGUuAAGGAGUUGGACUUGAAAUCCAAU-GGGC---UUU---- 9613859 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 G:CCGC:::GGUUCGAA CC:::::G::GC+ 9613860 GCCCGCGUAGGUUCGAACCCUGCUCGCUGCG 9613890 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUUA hit 20 : 9687694 9687768 (fwd) 20.62 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 + :C+ UGG: :AGU GGU A: :CG: G:CUCU++A:C :AG 9687694 GGUUCGGUGGUCGAGU-GGUgAACGCGUUCGCCUCUUGAGCAGAAG-------------- 9687738 >>>>,.,<<<<<_______>>>>..>))))))): 60 ggccG.CcCgGGUUCGAaUCCcG..gcgggGgCa 90 + ::GGGUUCG +UCCC: : +G: + A 9687739 ----UuUGUGGGUUCGGUUCCCAuaCAUGGUUUA 9687768 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: UCCCAUGUGGUCUAGUGGUUAGGAUUCGUGGUUUUCACCCACGCGGCCCGGGUUCGAUUCCCGGCAUGGGAA hit 21 : 9891746 9891817 (fwd) 79.03 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC::GUG::C:AGU GGU+A:G:: C::G: U U+A :C::G G 9891746 UCCCAUGUGGUCUAGU-GGUuAGGAUUCGUGGUUUUCACCCACGCG-------------- 9891790 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC::GGG:A 9891791 ----GCCCGGGUUCGAUUCCCGGCAUGGGAA 9891817 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUGCA hit 22 : 10601186 10601256 (fwd) 78.60 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C::UG:::CAGU GGUAG:::GC :G:CU +A :C: G G 10601186 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 10601229 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG::G::GCA 10601230 ---GCCCGGGUUCGAUUCCCGGUCGAUGCA 10601256 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCGGUGGUGGCCGAGCGGUCAAGGCGUAGGACUCCCGAUCCUAUUCUGGUAACAGAGCGCGGGUUCGAAUCCCGUCCACCGCA hit 23 : 10609900 10609982 (fwd) 72.02 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC::::GUGGCC:AG GGU A:GGCG::GGACUC ++AUCC::+ :::: U + 10609900 GCGGUGGUGGCCGAGC-GGUcAAGGCGUAGGACUCCCGAUCCUAU-UCUG---GUAA--- 10609951 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 ::::GC CGGGUUCGAAUCCCG C::::GCA 10609952 CAGAGCGCGGGUUCGAAUCCCGUCCACCGCA 10609982 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: UCCUCGGUAGUAUAGUGGUGAGUAUCCGCGUCUGUCACAUGCGAGACCCGGGUUCAAUUCCCGGCCGGGGAG hit 24 : 10815253 10815324 (fwd) 66.02 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:C:GU+::::AGU GGU A:::: C:: :CU U+A : ::GAG 10815253 UCCUCGGUAGUAUAGU-GGUgAGUAUCCGCGUCUGUCACAUGCGAG-------------- 10815297 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCCGGGUUC A+UCCCGGC:G:GG:+ 10815298 ----ACCCGGGUUCAAUUCCCGGCCGGGGAG 10815324 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCACACAUGGUU hit 25 : 10879671 10879743 (fwd) 24.15 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 C : UGG: :AGU GGU A: :CG: G:CUCU++A:C :AG 10879671 GCUUCGGUGGUCGAGU-GGUgAACGCGUUCGCCUCUUGAGCAGAAG-------------- 10879715 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + ::GGGUUCG +UCCC:: : G 10879716 ----UuUGUGGGUUCGGUUCCCACACAUGGUU 10879743 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 26 : 10935636 10935707 (fwd) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 10935636 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 10935680 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 10935681 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 10935707 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCCUCGAUAGCUCAGUUGGGGUGAGCGUACGACUGAAAAUCGUUAGGUCACCAGUUCGAUCCUGGUUCGGGCA hit 27 : 10953874 10953946 (fwd) 56.44 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC C::U+GC:CAGUUGG G:GCG ::GACU AAAUC:: AG 10953874 GCCUCGAUAGCUCAGUUGGGgUGAGCGUACGACUGAAAAUCGUUAG-------------- 10953919 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C::GUUCGA+ C::G:::G GGCA 10953920 ----GuCACCAGUUCGAUCCUGGUUCG-GGCA 10953946 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCAUUGGUGGCUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCAGCCCGGGUCCAAUUCCCGGUCGAUGCA hit 28 : 11166679 11166749 (fwd) 57.35 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC:::::UG: :CAGU GGUAG: :GC :G:CU +A :C: G 11166679 GCAUUGGUGGCUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCA--------------- 11166722 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGU C A+UCCCGG:::::GCA 11166723 ---GCCCGGGUCCAAUUCCCGGUCGAUGCA 11166749 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGUGGCAGAGCAUUCGACUGCAGAUCGAGAGGUCCCUGGUUCAACUCCGGGUGCCCCCU hit 29 : 11513602 11513673 (fwd) 70.50 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G::::::U+GC:CAGU GG AG:GC U:GACU A+AUC:A AG 11513602 GGGGGUAUAGCUCAGU-GGCAGAGCAUUCGACUGCAGAUCGAGAG--------------- 11513645 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCC:GGUUC A UCC:GG::::::C 11513646 ---GuCCCUGGUUCAACUCCGGGUGCCCCCU 11513673 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 30 : 11592837 11592909 (fwd) 80.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC C::GACUCU+AAUC::G+ 11592837 GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 11592881 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 11592882 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 11592909 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA hit 31 : 11986042 11986113 (fwd) 80.85 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:::GUG::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 11986042 UCCGUUGUGGUCUAGU-GGUuAGGAUUUAUGGCUCUCACCCAUAAG-------------- 11986086 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCC:GGGUUCGA+UCCC:GC:::GG:A 11986087 ----GCCGGGGUUCGAUUCCCCGCAACGGAA 11986113 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA hit 32 : 11986814 11986885 (fwd) 80.85 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:::GUG::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 11986814 UCCGUUGUGGUCUAGU-GGUuAGGAUUUAUGGCUCUCACCCAUAAG-------------- 11986858 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCC:GGGUUCGA+UCCC:GC:::GG:A 11986859 ----GCCGGGGUUCGAUUCCCCGCAACGGAA 11986885 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGUCUCGUGGUGUAGUGGUUAUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCA hit 33 : 12073915 12073987 (fwd) 77.09 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+:C:CGUGG:::AGU GGU+A:::C :::G:CU +A :C:::AG 12073915 GGUCUCGUGGUGUAGU-GGUuAUCACAUCUGUCUAACACACAGAAG-------------- 12073959 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:::GGUUCGA CC:::CG:G:+CA 12073960 ----GuCGGUGGUUCGAGCCCGCCCGAGAUCA 12073987 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: AGCAGCGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGGUGGAUCGAAACCACUCGCUGCUA hit 34 : 12150961 12151032 (fwd) 70.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 ::C::CGUG:C:CAGU GG AG:G:GCUGG:C C +AA:CCAGAG 12150961 AGCAGCGUGGCGCAGU-GGAAGCGUGCUGGGCCCAUAACCCAGAG--------------- 12151004 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C ::GG UCGAA CC:: CG::G::A 12151005 ---GuCGGUGGAUCGAAACCACUCGCUGCUA 12151032 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGCCUUGUGGCCUAAUGGAUAAGGCGUCUGACUUCUAAUCAGAAGAUUGCAGGUUCGAUCCCUGCCUGGGUCA hit 35 : 12206653 12206725 (fwd) 74.33 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+CC: GUGGCC A U GG +A GGCG:::GACU +AAUC:::AG 12206653 GGCCUUGUGGCCUAAU-GGAuAAGGCGUCUGACUUCUAAUCAGAAG-------------- 12206697 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + :C:GGUUCGA+ CC:G:C :GG+CA 12206698 ----AuUGCAGGUUCGAUCCCUGCCUGGGUCA 12206725 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: AGCAGCGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGGUGGAUCGAAACCACUCGCUGCUA hit 36 : 12237359 12237430 (fwd) 70.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 ::C::CGUG:C:CAGU GG AG:G:GCUGG:C C +AA:CCAGAG 12237359 AGCAGCGUGGCGCAGU-GGAAGCGUGCUGGGCCCAUAACCCAGAG--------------- 12237402 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C ::GG UCGAA CC:: CG::G::A 12237403 ---GuCGGUGGAUCGAAACCACUCGCUGCUA 12237430 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GUGUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUAACUCCA hit 37 : 12609827 12609894 (fwd) 43.83 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G ::U+GC:CAGU GGUAG:GCGCU::: U +A :::AGAG 12609827 G----UGUAGCUCAGU-GGUAGAGCGCUCCCUUAGCAUGGGAGAG--------------- 12609866 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G C::GGGUUC A+UCCC:::: CA 12609867 ---GgCUGGGGUUCAAUUCCCCAUAACUCCA 12609894 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GGUCUCGUGGUGUAGUGGUUAUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCA hit 38 : 13169108 13169180 (fwd) 77.09 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+:C:CGUGG:::AGU GGU+A:::C :::G:CU +A :C:::AG 13169108 GGUCUCGUGGUGUAGU-GGUuAUCACAUCUGUCUAACACACAGAAG-------------- 13169152 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:::GGUUCGA CC:::CG:G:+CA 13169153 ----GuCGGUGGUUCGAGCCCGCCCGAGAUCA 13169180 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GCGUUCGGGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 39 : 13333041 13333112 (fwd) 65.36 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CG G::::A U GGU A::::G:::G:CU +AA:C::: G 13333041 GCGUUCGGGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 13333085 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 13333086 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 13333112 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 0 ----hitSequence: GAUCAGGUGGCCGAGUGGUUAAGGCGAUGGACUGCUAAUCCAUUGGGGUUUCCCCGCGUGAGUUCGAAUCUCAUCCUGAUCG hit 40 : 14170885 14170966 (fwd) 81.67 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G::C::GUGGCC:AGU GGU+A:GGCG:UGGACU +AAUCCA:+ GG:: UUU 14170885 GAUCAGGUGGCCGAGU-GGUuAAGGCGAUGGACUGCUAAUCCAUU-GGGG---UUU---- 14170935 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 ::CCGC :G:GUUCGAAUC:C: C::G::C+ 14170936 CCCCGCGUGAGUUCGAAUCUCAUCCUGAUCG 14170966 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 41 : 13339264 13339193 (rev) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 1741208 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 1741252 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 1741253 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 1741279 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 42 : 13332297 13332226 (rev) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 1748175 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 1748219 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 1748220 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 1748246 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCCCUUAUAGCUCAGUGGUAGAGCGUUGGUCUUGUAAACCAAAGGUCCGUAGUUCAAUCCUGCGUGGGGGCA hit 43 : 13318462 13318391 (rev) 78.76 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC:::U+GC:CAGU GGUAG:GCG:UGG:CU +AA:CCA:AG 1762010 GCCCUUAUAGCUCAGU-GGUAGAGCGUUGGUCUUGUAAACCAAAG--------------- 1762053 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CC:::GUUC A+ C:::G:::GGGCA 1762054 ---GuCCGUAGUUCAAUCCUGCGUGGGGGCA 1762081 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 44 : 13305791 13305719 (rev) 80.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC C::GACUCU+AAUC::G+ 1774681 GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 1774725 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 1774726 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 1774753 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GGUCUCGUGGUGUAGUGGUUAUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCA hit 45 : 13164476 13164404 (rev) 77.09 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+:C:CGUGG:::AGU GGU+A:::C :::G:CU +A :C:::AG 1915996 GGUCUCGUGGUGUAGU-GGUuAUCACAUCUGUCUAACACACAGAAG-------------- 1916040 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:::GGUUCGA CC:::CG:G:+CA 1916041 ----GuCGGUGGUUCGAGCCCGCCCGAGAUCA 1916068 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GGCCAAAUGGCGCAGUGGAAAAAUUCAUGGCUAAGAAUUAUCACACCGGGGUUCGACUCCCCGCUGUGGUCG hit 46 : 12739777 12739706 (rev) 23.67 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G+CC: :UG: :AGU GG A: : :: CU AA :: A 2340695 GGCCAAAUGGCGCAGU-GGAAAAAUUCAUGGCUAAGAAUUAUCAC--------------- 2340738 >>>,,<<<<<_______>>>>>.))))))): 61 gccGCcCgGGUUCGAaUCCcGg.cgggGgCa 90 CC:GGGUUCGA UCCC:G : :GG+C+ 2340739 ---ACCGGGGUUCGACUCCCCGcUGUGGUCG 2340766 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: AGCAGCGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGGUGGAUCGAAACCACUCGCUGCUA hit 47 : 12233547 12233476 (rev) 70.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 ::C::CGUG:C:CAGU GG AG:G:GCUGG:C C +AA:CCAGAG 2846925 AGCAGCGUGGCGCAGU-GGAAGCGUGCUGGGCCCAUAACCCAGAG--------------- 2846968 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C ::GG UCGAA CC:: CG::G::A 2846969 ---GuCGGUGGAUCGAAACCACUCGCUGCUA 2846996 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA hit 48 : 11985312 11985241 (rev) 80.85 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:::GUG::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 3095160 UCCGUUGUGGUCUAGU-GGUuAGGAUUUAUGGCUCUCACCCAUAAG-------------- 3095204 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCC:GGGUUCGA+UCCC:GC:::GG:A 3095205 ----GCCGGGGUUCGAUUCCCCGCAACGGAA 3095231 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCAGUCAUGUCCGAGUGGUUAAGGAGUUUGACUCGAAAUCAAAUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG hit 49 : 11811447 11811366 (rev) 83.07 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::C:UG:CC:AGU GGU+A:GG:G:U:GACUC AAAUC:A:+ GG:C U+U 3269025 GCAGUCAUGUCCGAGU-GGUuAAGGAGUUUGACUCGAAAUCAAAU-GGGC---UCU---- 3269075 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 G:CCGC:::GGUUCGAAUCC::::G:::GC+ 3269076 GCCCGCGUAGGUUCGAAUCCUGCUGACUGCG 3269106 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA hit 50 : 11593501 11593420 (rev) 65.77 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G+:::::UGGCC:AG GGU A:GGCGCUGG: U + :CCAG+ ::C: U+ 3486971 GGAGAGAUGGCCGAGC-GGUccAAGGCGCUGGUUUAAGGCACCAGU-CCCU---UC---- 3487021 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 :G::GC::GGGUUCGAAUCCC:::::::+CA 3487022 -GGGGGCGUGGGUUCGAAUCCCACUCUCUUCA 3487052 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 51 : 11592244 11592172 (rev) 80.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC C::GACUCU+AAUC::G+ 3488228 GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 3488272 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 3488273 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 3488300 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 52 : 11587828 11587756 (rev) 80.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC C::GACUCU+AAUC::G+ 3492644 GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 3492688 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 3492689 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 3492716 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 53 : 10935537 10935466 (rev) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 4144935 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 4144979 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 4144980 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 4145006 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCACACAUGGUU hit 54 : 10880814 10880742 (rev) 24.15 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 C : UGG: :AGU GGU A: :CG: G:CUCU++A:C :AG 4199658 GCUUCGGUGGUCGAGU-GGUgAACGCGUUCGCCUCUUGAGCAGAAG-------------- 4199702 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + ::GGGUUCG +UCCC:: : G 4199703 ----UuUGUGGGUUCGGUUCCCACACAUGGUU 4199730 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCGGUGGUGGCCGAGCGGUCAAGGCGUAGGACUCCCGAUCCUAUUCUGGUAACAGAGCGCGGGUUCGAAUCCCGUCCACCGCA hit 55 : 10612265 10612183 (rev) 72.02 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC::::GUGGCC:AG GGU A:GGCG::GGACUC ++AUCC::+ :::: U + 4468207 GCGGUGGUGGCCGAGC-GGUcAAGGCGUAGGACUCCCGAUCCUAU-UCUG---GUAA--- 4468258 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 ::::GC CGGGUUCGAAUCCCG C::::GCA 4468259 CAGAGCGCGGGUUCGAAUCCCGUCCACCGCA 4468289 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCGGUGGUGGCCGAGCGGUCAAGGCGUAGGACUCCCGAUCCUAUUCUGGUAACAGAGCGCGGGUUCGAAUCCCGUCCACCGCA hit 56 : 10609264 10609182 (rev) 72.02 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC::::GUGGCC:AG GGU A:GGCG::GGACUC ++AUCC::+ :::: U + 4471208 GCGGUGGUGGCCGAGC-GGUcAAGGCGUAGGACUCCCGAUCCUAU-UCUG---GUAA--- 4471259 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 ::::GC CGGGUUCGAAUCCCG C::::GCA 4471260 CAGAGCGCGGGUUCGAAUCCCGUCCACCGCA 4471290 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GUAUGACUAGCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCUCCGGUUCGGCCC hit 57 : 10141721 10141651 (rev) 37.17 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G ::: U+: C:AGU GGUA:G : CU:G: U + :C:AGAG 4938751 GUAUGACUAG-CUAGU-GGUAUGAUUCUCGCUUUGGGUGCGAGAG--------------- 4938793 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGG UUC A+ CCGG ::: C 4938794 ---GuCCCGGGUUCAAUCUCCGGUUCGGCCC 4938821 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCCCCGGUGGCCGAGCGGUCGAAGGCGUGAGACUUAUGAUCUCAUUGGGUUAAACCAGUCGCGGGUUCGAAUCCCGCCCGGGGCA hit 58 : 9571980 9571896 (rev) 79.66 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 GCCCC:GUGGCC:AG GGU A:GGCG:::GACU ++AUC:::+ :G: UU + 5508492 GCCCCGGUGGCCGAGC-GGUcgAAGGCGUGAGACUUAUGAUCUCAU-UGGG---UUAA-- 5508544 >>>>>,.,<<<<<_______>>>>>))))))): 59 gggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 :C:G+C:CGGGUUCGAAUCCCG:C:GGGGCA 5508545 -ACCAGuCGCGGGUUCGAAUCCCGCCCGGGGCA 5508576 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 59 : 9336540 9336469 (rev) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 5743932 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 5743976 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 5743977 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 5744003 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 60 : 9335548 9335477 (rev) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 5744924 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 5744968 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 5744969 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 5744995 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCGUUCGUGGUGUAAUGGUCAGCAUGGAUGCCUUCCAAGCAUUCGACGGGGGUUCGAUUCCCCCCGAACGCA hit 61 : 9328089 9328018 (rev) 73.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::CGUG::::A U GGU A::::G:::G:CU +AA:C::: G 5752383 GCGUUCGUGGUGUAAU-GGUcAGCAUGGAUGCCUUCCAAGCAUUCG-------------- 5752427 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C::GGGUUCGA+UCCC::CG:::GCA 5752428 ----ACGGGGGUUCGAUUCCCCCCGAACGCA 5752454 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGAGUGGUCUAGUGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGAUCGAUCCCCGGCUCAGCCC hit 62 : 9277053 9276982 (rev) 75.12 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:::GUG::C:AGU GGUA:G:: CU:G: U + :C:AGAG 5803419 GGCUGAGUGGUCUAGU-GGUAUGAUUCUCGCUUAGGGUGCGAGAG--------------- 5803462 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGG UCGA+ CCCGGC:::G:C 5803463 ---GuCCCGGGAUCGAUCCCCGGCUCAGCCC 5803490 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCUUCCGUGGCGCAAUAGGCAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCGGGAGCG hit 63 : 9059380 9059308 (rev) 73.71 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::CCGUGGC:CA U GG AG:GCG:U:G:CU U+AA:C:A:AG 6021092 GCUUCCGUGGCGCAAUAGGCAGCGCGUUCGGCUGUUAACCGAAAG--------------- 6021136 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :::GGUUCGA CC:::CGG::GC+ 6021137 ---GuUGGUGGUUCGAGCCCACCCGGGAGCG 6021164 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GUCGAGGUGGCCGAGUGGGGCAAGGCAUGAGUUUUCAGACUCAAAGGGCACUAGCCCGAUGCAGGUUCAAAUCCUGUCCUCGGCG hit 64 : 8789294 8789210 (rev) 44.94 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G C:::GUGGCC:AGU GG A:GGC :::G U A+A C:::A GG:C +U+ 6291178 GUCGAGGUGGCCGAGUGGGGcAAGGCAUGAGUUUUCAGA-CUCAAAGGGC---ACUA--- 6291230 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G:CCG C:GGUUC AAUCC:G C:::G C+ 6291231 GCCCGaUGCAGGUUCAAAUCCUGUCCUCGGCG 6291262 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA hit 65 : 8538255 8538184 (rev) 80.85 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:::GUG::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 6542217 UCCGUUGUGGUCUAGU-GGUuAGGAUUUAUGGCUCUCACCCAUAAG-------------- 6542261 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCC:GGGUUCGA+UCCC:GC:::GG:A 6542262 ----GCCGGGGUUCGAUUCCCCGCAACGGAA 6542288 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCUUUACCUGUGGGCGCAAUAGGCAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCGAGAGCG hit 66 : 7727016 7726940 (rev) 50.39 bits (((((...((,.,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____ 1 GcCcc...cgU.GGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUg 56 GC::: :GU+GGC:CA U GG AG:GCG:U:G:CU U+AA:C:A:AG 7353456 GCUUUaccUGUgGGCGCAAUAGGCAGCGCGUUCGGCUGUUAACCGAAAG----------- 7353504 >>>>>>>,.,<<<<<_______>>>>>))))))): 57 gggggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ :::GGUUCGA CC:::C::::GC+ 7353505 -------GuUGGUGGUUCGAGCCCACCCGAGAGCG 7353532 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGUUAGCUCAGCCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 67 : 7287489 7287417 (rev) 77.84 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAG +GGUAG:GC C::GACUCU+AAUC::G+ 7792983 GCCCGGUUAGCUCAGCCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 7793027 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 7793028 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 7793055 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCACUCAUGGCGCAGUUGGGAACACUGGCGACUAACGGUCAGCAGGUCUCUGGUUCAAUCCCACUGUGUGCC hit 68 : 6220956 6220885 (rev) 20.37 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC:C C:UGG ::AGUUGG A:: C GACU ++ UC AG 8859516 GCACUCAUGGCGCAGUUGGGAACACUGGCGACUAACGGUCAGCAG--------------- 8859560 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C :GGUUC A+ CC: :G G:GC 8859561 ---GuCUCUGGUUCAAUCCCAC-UGUGUGCC 8859587 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA hit 69 : 6171608 6171535 (rev) 85.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CC:U+GC:CAGU+GGU+AG:GCG::GG CU +AA CC::AG 8908864 GCCGCCAUAGCUCAGUCGGUuAGAGCGUGGGUCUAAUAAGCCCAAG-------------- 8908909 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA CC:G::GG:GGCA 8908910 ----GuCGCAGGUUCGACCCCUGCUGGCGGCA 8908937 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA hit 70 : 6059371 6059290 (rev) 65.77 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G+:::::UGGCC:AG GGU A:GGCGCUGG: U + :CCAG+ ::C: U+ 9021101 GGAGAGAUGGCCGAGC-GGUccAAGGCGCUGGUUUAAGGCACCAGU-CCCU---UC---- 9021151 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 :G::GC::GGGUUCGAAUCCC:::::::+CA 9021152 -GGGGGCGUGGGUUCGAAUCCCACUCUCUUCA 9021182 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GGCUGAGUGGUCUAGUGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGAUCGAUCCCCGGCUCAGCCC hit 71 : 5863001 5862930 (rev) 75.12 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:::GUG::C:AGU GGUA:G:: CU:G: U + :C:AGAG 9217471 GGCUGAGUGGUCUAGU-GGUAUGAUUCUCGCUUAGGGUGCGAGAG--------------- 9217514 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGG UCGA+ CCCGGC:::G:C 9217515 ---GuCCCGGGAUCGAUCCCCGGCUCAGCCC 9217542 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GGCCGCGUGGCGCAAUGGAUAACGCGUCUGCCUACGGAGCAGAAGAUUGCAGGUUCGAAUCCUGCCGUGGUCG hit 72 : 5851291 5851219 (rev) 75.88 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+CC+CGUGGC::A U GG +A::GCG:::G:CU +A:C:::AG 9229181 GGCCGCGUGGCGCAAU-GGAuAACGCGUCUGCCUACGGAGCAGAAG-------------- 9229225 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + :C:GGUUCGAAUCC:G:CG+GG+C+ 9229226 ----AuUGCAGGUUCGAAUCCUGCCGUGGUCG 9229253 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCUUCCGUAGCGCAGUAGGCAGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACCGGGAGCA hit 73 : 3638926 3638854 (rev) 74.17 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::CCGU+GC:CAGU GG AG:GCG:::G CUC +AA C:::AG 11441546 GCUUCCGUAGCGCAGUAGGCAGCGCGUCAGUCUCAUAAUCUGAAG--------------- 11441590 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::G:GUUCGA C:C::CGG::GCA 11441591 ---GuCGUGAGUUCGAGCCUCACCGGGAGCA 11441618 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUGCA hit 74 : 2272439 2272369 (rev) 78.60 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C::UG:::CAGU GGUAG:::GC :G:CU +A :C: G G 12808033 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 12808076 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG::G::GCA 12808077 ---GCCCGGGUUCGAUUCCCGGUCGAUGCA 12808103 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #0,emb|BX284601| Caenorhabditis elegans chromosome I, complete sequence. ----isReversed: 1 ----hitSequence: GACUGCUUGGCGCAAUGGUAGCGCGUUCGACUCCAGAUCGAAAGGUUGGGCGUUCGAUCCGCUCAGUGGUCA hit 75 : 946117 946046 (rev) 71.81 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:+C:UGGC:CA U GGUAG:GCG:U:GACUC A+AUC:A:AG 14134355 GACUGCUUGGCGCAAU-GGUAGCGCGUUCGACUCCAGAUCGAAAG--------------- 14134398 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ : G GUUCGA+ C C ::G+:G:CA 14134399 ---GuUGGGCGUUCGAUCCGCUCAGUGGUCA 14134426 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCCAGCGUGGCCUAGUGGCUAAGAGUGAUGACUGGGGAGCACAAGACCGGGGUUCGAGUCCCCGUUCGGGUU hit 76 : 1331989 1332060 (fwd) 27.14 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 CC : :UG C AGU GG +A G :G CU +A C: AG 1331989 GCCAGCGUGGCCUAGU-GGCuAAGAGUGAUGACUGGGGAGCACAAG-------------- 1332033 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUCGA UCCC:G: : GG 1332034 ----ACCGGGGUUCGAGUCCCCGUUCGGGUU 1332060 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: UCCAGCGUGGCCUAGUGGCUAAGAGGGAUGGCUAGUGAGCACAAGACCGGGGUUCGAGUCCCCGUGCGGGUU hit 77 : 1334137 1334208 (fwd) 29.85 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 CC :C:UG C AGU GG +A G G :G CU ++A C: AG 1334137 UCCAGCGUGGCCUAGU-GGCuAAGAGGGAUGGCUAGUGAGCACAAG-------------- 1334181 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUCGA UCCC:G:G: GG 1334182 ----ACCGGGGUUCGAGUCCCCGUGCGGGUU 1334208 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCCAGCGUGGCCUAGUGGCUAAGAGGGAUGGCUGGGGAGCACAAGACCGGGGUUCGAGUCCCCGUUCGGGUU hit 78 : 1335743 1335814 (fwd) 27.89 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 CC : :UG C AGU GG +A G G :G CU +A C: AG 1335743 GCCAGCGUGGCCUAGU-GGCuAAGAGGGAUGGCUGGGGAGCACAAG-------------- 1335787 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUCGA UCCC:G: : GG 1335788 ----ACCGGGGUUCGAGUCCCCGUUCGGGUU 1335814 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GAUUUUUGGCGCAGUCGGUAAGAGGGUUGAUUGGUACGCAAUUGGUCCGGGGUUCGACCCCCCGUUAUGGUCA hit 79 : 1367946 1368018 (fwd) 27.25 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: : : UG :AGU+GGUA: G:U:G U +A C:A:+G 1367946 GAUUUU-UGGCGCAGUCGGUAAGAGGGUUGAUUGGUACGCAAUUG--------------- 1367989 >>>,.,<<<<<_______>>>>>.))))))): 61 gccG.CcCgGGUUCGAaUCCcGg.cgggGgCa 90 G+CC:GGGUUCGA CCC:G : : :CA 1367990 ---GuCCGGGGUUCGACCCCCCGuUAUGGUCA 1368018 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GUCCACUUGGCUCAACUGGUAAGAGGGAUGACUGGUACGCAAUAGGUCAGGGGUUCGACCCCCGGAGAGGUAA hit 80 : 1478761 1478833 (fwd) 23.22 bits (((((((,.,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgU.GGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 CC C:U+G::C:A U GGUA:G::G: :G CU +A C: :AG 1478761 GUCCACUUgGCUCAACU-GGUAAGAGGGAUGACUGGUACGCAAUAG-------------- 1478805 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C: GGGUUCGA CCC ::G GG A 1478806 ----GuCAGGGGUUCGACCCCCGGAGAGGUAA 1478833 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GAACUUUUGGCUCAACUGGUAAGAGGGAUACCAAUGGAGAAAUAGGUCAUGGGUUCGAUUCCCAACGAGGCCA hit 81 : 1481923 1481995 (fwd) 20.47 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G C:: UG C:CA UGGU AG:G G:U :C U +A: A:AG 1481923 GAACUUUUGGCUCAACUGGUaAGAGGGAUA-CCAAUGGAGAAAUAG-------------- 1481967 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA+UCCC:: ::G CA 1481968 ----GuCAUGGGUUCGAUUCCCAACGAGGCCA 1481995 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCAGUCAUGUCCGAGUGGUUAAGGAGAUUGACUAGAAAUCAAUUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG hit 82 : 1520040 1520121 (fwd) 80.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::C:UG:CC:AGU GGU+A:GG:G:U:GACU AAAUC:A:+ GG:C U+U 1520040 GCAGUCAUGUCCGAGU-GGUuAAGGAGAUUGACUAGAAAUCAAUU-GGGC---UCU---- 1520090 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 G:CCGC:::GGUUCGAAUCC::::G:::GC+ 1520091 GCCCGCGUAGGUUCGAAUCCUGCUGACUGCG 1520121 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GUCCCAAUGGCGCAGUGGGAUUAUGGCUGCACCCACAAGACCGGGGUUCGAUCCCCCGCUGGGUCA hit 83 : 2443051 2443116 (fwd) 24.30 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G CCC: UG C CAGU G G : :G:CU +A :C: :AG 2443051 GUCCCAAUGGCGCAGU-----GGGAUUAUGGCUG-CACCCACAAG--------------- 2443089 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CC:GGGUUCGA+ CCC:G :GGG CA 2443090 ---ACCGGGGUUCGAUCCCCCGCUGGGUCA 2443116 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA hit 84 : 2860339 2860420 (fwd) 65.77 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G+:::::UGGCC:AG GGU A:GGCGCUGG: U + :CCAG+ ::C: U+ 2860339 GGAGAGAUGGCCGAGC-GGUccAAGGCGCUGGUUUAAGGCACCAGU-CCCU---UC---- 2860389 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 :G::GC::GGGUUCGAAUCCC:::::::+CA 2860390 -GGGGGCGUGGGUUCGAAUCCCACUCUCUUCA 2860420 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUGCA hit 85 : 3062377 3062447 (fwd) 78.60 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C::UG:::CAGU GGUAG:::GC :G:CU +A :C: G G 3062377 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 3062420 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG::G::GCA 3062421 ---GCCCGGGUUCGAUUCCCGGUCGAUGCA 3062447 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCAGUCAUGUCCGAGUGGUUAAGGAGAUUGACUAGAAAUCAAUUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG hit 86 : 3267983 3268064 (fwd) 80.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:::C:UG:CC:AGU GGU+A:GG:G:U:GACU AAAUC:A:+ GG:C U+U 3267983 GCAGUCAUGUCCGAGU-GGUuAAGGAGAUUGACUAGAAAUCAAUU-GGGC---UCU---- 3268033 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 G:CCGC:::GGUUCGAAUCC::::G:::GC+ 3268034 GCCCGCGUAGGUUCGAAUCCUGCUGACUGCG 3268064 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA hit 87 : 4565374 4565445 (fwd) 69.85 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::::U+GC:CAGU GGUAG:GCGCU::: U +A :::AGAG 4565374 GGGGGUAUAGCUCAGU-GGUAGAGCGCUCCCUUAGCAUGGGAGAG--------------- 4565417 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G C::GGGUUC A+UCCC:::::: :CA 4565418 ---GgCUGGGGUUCAAUUCCCCAUACCUCCA 4565445 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA hit 88 : 5032751 5032824 (fwd) 85.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CC:U+GC:CAGU+GGU+AG:GCG::GG CU +AA CC::AG 5032751 GCCGCCAUAGCUCAGUCGGUuAGAGCGUGGGUCUAAUAAGCCCAAG-------------- 5032796 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA CC:G::GG:GGCA 5032797 ----GuCGCAGGUUCGACCCCUGCUGGCGGCA 5032824 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA hit 89 : 5237835 5237908 (fwd) 85.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CC:U+GC:CAGU+GGU+AG:GCG::GG CU +AA CC::AG 5237835 GCCGCCAUAGCUCAGUCGGUuAGAGCGUGGGUCUAAUAAGCCCAAG-------------- 5237880 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA CC:G::GG:GGCA 5237881 ----GuCGCAGGUUCGACCCCUGCUGGCGGCA 5237908 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA hit 90 : 5292299 5292370 (fwd) 69.85 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::::U+GC:CAGU GGUAG:GCGCU::: U +A :::AGAG 5292299 GGGGGUAUAGCUCAGU-GGUAGAGCGCUCCCUUAGCAUGGGAGAG--------------- 5292342 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G C::GGGUUC A+UCCC:::::: :CA 5292343 ---GgCUGGGGUUCAAUUCCCCAUACCUCCA 5292370 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: UCCGUUGUGGUCUAGUGGUUAGGAUUUAUGGCUCUCACCCAUAAGGCCGGGGUUCGAUUCCCCGCAACGGAA hit 91 : 5293419 5293490 (fwd) 80.85 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CC:::GUG::C:AGU GGU+A:G:: :::G:CUCU+A :C:::AG 5293419 UCCGUUGUGGUCUAGU-GGUuAGGAUUUAUGGCUCUCACCCAUAAG-------------- 5293463 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCC:GGGUUCGA+UCCC:GC:::GG:A 5293464 ----GCCGGGGUUCGAUUCCCCGCAACGGAA 5293490 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCCUCCUUAGCUCAGUUGGUAGAGCGUGAGACUUUUAAUCUUAAGGUCAGGGGUUCGAGUCCCCUAGGUGGCU hit 92 : 6565189 6565261 (fwd) 77.08 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC CC:U+GC:CAGUUGGUAG:GCG: :GACU U+AAUC: :AG 6565189 GCCUCCUUAGCUCAGUUGGUAGAGCGUGAGACUUUUAAUCUUAAG--------------- 6565233 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA UCCC:::GG GGC 6565234 ---GuCAGGGGUUCGAGUCCCCUAGGUGGCU 6565261 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCAACCAGUAGCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA hit 93 : 6721701 6721783 (fwd) 57.40 bits (((((((,,<<<<_______.._>>>>,<<<<<______..._>>>>>,,<<<<<<<___ 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaA...AuCcagAGggccugcUUU 55 G+:::::UGGCC:AG GGU A:GGC :::G: U A+ +A:C:::AG:::C 6721701 GGAGAGAUGGCCGAGC-GGUccAAGGC-GCUGGUUUAAGgcaACCAGUAGCUUC------ 6721752 _>>>>>>>,,<<<<<_______>>>>>))))))): 56 ggggggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 G:::GC::GGGUUCGAAUCCC:::::::+CA 6721753 ----GGGGGCGUGGGUUCGAAUCCCACUCUCUUCA 6721783 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGUGAGAUGGCCGAGUGGUCUAAGGCGCUGGUUUUAGGCACCAGUCCCUCCGGGGGCGUGGGUUCGAAUCCCACUCUCAUCA hit 94 : 6853129 6853210 (fwd) 70.98 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G+:::::UGGCC:AGU GGU +A:GGCGCUGG: U + :CCAG+ ::C:: 6853129 GGUGAGAUGGCCGAGU-GGUcuAAGGCGCUGGUUUUAGGCACCAGU-CCCUC-------- 6853178 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 ::G::GC::GGGUUCGAAUCCC:::::::+CA 6853179 CGGGGGCGUGGGUUCGAAUCCCACUCUCAUCA 6853210 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: UCCCAUGUGGUCUAGUGGUUAGGAUUCGUGGUUUUCACCCACGCGGCCCGGGUUCGAUUCCCGGCAUGGGAA hit 95 : 6898118 6898189 (fwd) 79.03 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :CCC::GUG::C:AGU GGU+A:G:: C::G: U U+A :C::G G 6898118 UCCCAUGUGGUCUAGU-GGUuAGGAUUCGUGGUUUUCACCCACGCG-------------- 6898162 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGGC::GGG:A 6898163 ----GCCCGGGUUCGAUUCCCGGCAUGGGAA 6898189 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: ACCUGUGUAGCUCAGGGGUAGAGCGCUCGCUUUGCAUGCGAGAAGUCUGGGGUUCGAUUCCCCAUACCUCCA hit 96 : 7001553 7001624 (fwd) 46.91 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 :::U+GC:CAG GGUAG:GCGCU:G: U +A :C:AGA 7001553 ACCUGUGUAGCUCAGG-GGUAGAGCGCUCGCUUUGCAUGCGAGAA--------------- 7001596 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA+UCCC::::: A 7001597 ---GuCUGGGGUUCGAUUCCCCAUACCUCCA 7001624 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGUAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA hit 97 : 7003199 7003270 (fwd) 69.98 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::::U+GC:CAGU GGUAG:GCGCU::: U +A :::AGAG 7003199 GGGGGUAUAGCUCAGU-GGUAGAGCGCUCCCUUAGUAUGGGAGAG--------------- 7003242 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G C::GGGUUC A+UCCC:::::: :CA 7003243 ---GgCUGGGGUUCAAUUCCCCAUACCUCCA 7003270 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GACUUAAUAAGUUUGAAGUGGUUAGUACUCCACGUUGUGGCCGUGGCGACGCUAGUUCGAUUCCAGCAGCAGGCA hit 98 : 9404263 9404337 (fwd) 23.48 bits (((((((,,.<<<<.._______._>>>>,<<<<<_______>>>>>,,<<<<<<<____ 1 GcCcccgUG.GCcc..AGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUg 56 G C: U++G: : AGU GGU+A: :C C:::: U U + ::::G G 9404263 GACUUAAUAaGUUUgaAGU-GGUuAGUACUCCACGUUGUGGCCGUGGCG----------- 9404310 >>>>>>>,,<<<<<_______>>>>>))))))): 57 gggggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C:C::GUUCGA+UC::G: :G CA 9404311 -------ACGCUAGUUCGAUUCCAGCAGCAGGCA 9404337 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGCCGCGUGGCCUAAUGGAUAAGGCACCAGACUUCGAAUCUGGGGAUUGCAGGUUCGAGUCCUGCCGUGGUCG hit 99 : 9566145 9566217 (fwd) 73.13 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+CC+CGUGGCC A U GG +A GGC C::GACU AAUC::G G 9566145 GGCCGCGUGGCCUAAU-GGAuAAGGCACCAGACUUCGAAUCUGGGG-------------- 9566189 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 + :C:GGUUCGA UCC:G:CG+GG+C+ 9566190 ----AuUGCAGGUUCGAGUCCUGCCGUGGUCG 9566217 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCCCGGUUAGCUCAGUCUACCGACUGCACCAGACUCUUAAUCUGGUUGUCGUGGGUUCGAGUCCCGCAUUGGGCU hit 100 : 9773558 9773632 (fwd) 43.43 bits (((((((,,<<<<____.__....__>>>>,<<<<<_______>>>>>,,<<<<<<<___ 1 GcCcccgUGGCccAGUU.GG....UAggGCGcugGaCUcuaAAuCcagAGggccugcUUU 55 GCCC++:U+GC AGU++ A GC C::GACUCU+AAUC::G+ 9773558 GCCCGGUUAGCUCAGUCu--accg-ACUGCACCAGACUCUUAAUCUGGUU---------- 9773604 _>>>>>>>,.,<<<<<_______>>>>>))))))): 56 ggggggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA UCCC:::++GGGC 9773605 --------GuCGUGGGUUCGAGUCCCGCAUUGGGCU 9773632 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: UCUACUCUAGACACUAUGAGAGCGCGUCAGUCUCAUAUUCUGAAGGUCGUGAGUUCGAGCCUCACCGGGAGCA hit 101 : 10008923 10008995 (fwd) 23.31 bits (((((((,,<.<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGG.CccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 C: C: U+G C C U G AG GCG:::G CUC +A C:::AG 10008923 UCUACUCUAGaCACUAU-GAGAGCGCGUCAGUCUCAUAUUCUGAAG-------------- 10008967 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::G:GUUCGA C:C:: :G :G A 10008968 ----GuCGUGAGUUCGAGCCUCACCGGGAGCA 10008995 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGUUCGGCCC hit 102 : 10302301 10302372 (fwd) 77.11 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:CC:::UG::C:AGU GGUA:G:: CU:G: U + :C:AGAG 10302301 GGCCGAAUGGUCUAGU-GGUAUGAUUCUCGCUUUGGGUGCGAGAG--------------- 10302344 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC A+ CCCGG:::GG:C 10302345 ---GuCCCGGGUUCAAUCCCCGGUUCGGCCC 10302372 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGUUCGGCCC hit 103 : 10304913 10304984 (fwd) 77.11 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:CC:::UG::C:AGU GGUA:G:: CU:G: U + :C:AGAG 10304913 GGCCGAAUGGUCUAGU-GGUAUGAUUCUCGCUUUGGGUGCGAGAG--------------- 10304956 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC A+ CCCGG:::GG:C 10304957 ---GuCCCGGGUUCAAUCCCCGGUUCGGCCC 10304984 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCGCUCGCUUUGCAUGCGAGAAGUCUGGGGUUCGAUUCCCCAUACCUCCA hit 104 : 11334406 11334477 (fwd) 72.64 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::::U+GC:CAG GGUAG:GCGCU:G: U +A :C:AGA 11334406 GGGGGUAUAGCUCAGG-GGUAGAGCGCUCGCUUUGCAUGCGAGAA--------------- 11334449 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA+UCCC:::::: :CA 11334450 ---GuCUGGGGUUCGAUUCCCCAUACCUCCA 11334477 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUCA hit 105 : 11441087 11441161 (fwd) 24.47 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G+ :C+ UGG: :AGU GGU A: :CG: G:CUCU++A:C :AG 11441087 GGUUCGGUGGUCGAGU-GGUgAACGCGUUCGCCUCUUGAGCAGAAG-------------- 11441131 >>>>,.,<<<<<_______>>>>..>))))))): 60 ggccG.CcCgGGUUCGAaUCCcG..gcgggGgCa 90 + ::GGGUUCG +UCCC: : +G: +CA 11441132 ----UuUGUGGGUUCGGUUCCCAuaCAUGGUUCA 11441161 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGUCCUGUGGUGUAGUGGUUAUCACGUCUGCUUUACACGCAGUAGGCCGCCGGUUCGAUCCCGGCCAGGACCU hit 106 : 11959270 11959342 (fwd) 72.57 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G::CC:GUGG:::AGU GGU+A:::CG ::G: U +A :C:: AG 11959270 GGUCCUGUGGUGUAGU-GGUuAUCACGUCUGCUUUACACGCAGUAG-------------- 11959314 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G C:C:GGUUCGA+ CC:G:C:GG::C 11959315 ----GcCGCCGGUUCGAUCCCGGCCAGGACCU 11959342 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA hit 107 : 12362343 12362416 (fwd) 85.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CC:U+GC:CAGU+GGU+AG:GCG::GG CU +AA CC::AG 12362343 GCCGCCAUAGCUCAGUCGGUuAGAGCGUGGGUCUAAUAAGCCCAAG-------------- 12362388 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA CC:G::GG:GGCA 12362389 ----GuCGCAGGUUCGACCCCUGCUGGCGGCA 12362416 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA hit 108 : 12494635 12494708 (fwd) 85.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CC:U+GC:CAGU+GGU+AG:GCG::GG CU +AA CC::AG 12494635 GCCGCCAUAGCUCAGUCGGUuAGAGCGUGGGUCUAAUAAGCCCAAG-------------- 12494680 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA CC:G::GG:GGCA 12494681 ----GuCGCAGGUUCGACCCCUGCUGGCGGCA 12494708 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GACUGCUUGGCGCAAUGAUAGCGCGUUCGACUCCAGAUCGAAAGGUUGGGCGUUCGAUCCGCUCAGUGGUCA hit 109 : 12539491 12539562 (fwd) 63.90 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:C:+C:UGGC:CA U G UAG:GCG:U:GACUC A+AUC:A:AG 12539491 GACUGCUUGGCGCAAU-GAUAGCGCGUUCGACUCCAGAUCGAAAG--------------- 12539534 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+ : G GUUCGA+ C C ::G+:G:CA 12539535 ---GuUGGGCGUUCGAUCCGCUCAGUGGUCA 12539562 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA hit 110 : 12542528 12542599 (fwd) 69.85 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::::U+GC:CAGU GGUAG:GCGCU::: U +A :::AGAG 12542528 GGGGGUAUAGCUCAGU-GGUAGAGCGCUCCCUUAGCAUGGGAGAG--------------- 12542571 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G C::GGGUUC A+UCCC:::::: :CA 12542572 ---GgCUGGGGUUCAAUUCCCCAUACCUCCA 12542599 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCGCUCGCUUUGCAUGCGAGAAGUCUGGGGUUCGAUUCCCCAUACCUCCA hit 111 : 12678201 12678272 (fwd) 72.64 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::::U+GC:CAG GGUAG:GCGCU:G: U +A :C:AGA 12678201 GGGGGUAUAGCUCAGG-GGUAGAGCGCUCGCUUUGCAUGCGAGAA--------------- 12678244 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA+UCCC:::::: :CA 12678245 ---GuCUGGGGUUCGAUUCCCCAUACCUCCA 12678272 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 0 ----hitSequence: CUCGCGUGGCGCAGGCGGUAGCGCAUUUCGCUGUUGAUCAAGAGGCCACAGGUUCGCCUCCCGUGCGAUG hit 112 : 14616961 14617030 (fwd) 24.20 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 :C:C GUGGC:CAG +GGUAG:GC U: CU U++A :A AG 14616961 CUCGC-GUGGCGCAGGCGGUAGCGCAUUUCGCUGUUGAUCAAGAG--------------- 14617004 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G C:C GGUUCG UCC G: G:G: + 14617005 ---GcCACAGGUUCGCCUCCCGU--GCGAUG 14617030 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGUGAGAUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCAUCA hit 113 : 14635296 14635215 (rev) 68.79 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G+:::::UGGCC:AG GGU +A:GGCGCUGG: U + :CCAG+ ::C: U+ 644005 GGUGAGAUGGCCGAGC-GGUcuAAGGCGCUGGUUUAAGGCACCAGU-CCCU---UC---- 644055 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 :G::GC::GGGUUCGAAUCCC:::::::+CA 644056 -GGGGGCGUGGGUUCGAAUCCCACUCUCAUCA 644086 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGUUCCAUGGUGUAGCGGUUAGCACUCAGGACUUUGAAUCCUGCGACCCGAGUUCAAAUCUCGGUGGAACCU hit 114 : 14474793 14474722 (rev) 74.76 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::CC:UGG:::AG GGU+A:::C C:GGACU U AAUCC:G G 804508 GGUUCCAUGGUGUAGC-GGUuAGCACUCAGGACUUUGAAUCCUGCG-------------- 804552 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCCG:GUUC AAUC:CGG:GG:::C 804553 ----ACCCGAGUUCAAAUCUCGGUGGAACCU 804579 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCUCGCGUGGCCUAAUGGAUAAGGCACCGGACUCCGGAACCGGGAAUGGGGGUUCAAGUCCCUCCGCGAGCU hit 115 : 12728712 12728641 (rev) 54.71 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GC:C:CGUGGCC A U GG +A GGC C:GG CUC +A CC:G 2550589 GCUCGCGUGGCCUAAU-GGAuAAGGCACCGGACUCCGGAACCGGGA-------------- 2550633 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 : GGGUUC A UCCC :CG:G:GC 2550634 ----AUGGGGGUUCAAGUCCCUCCGCGAGCU 2550660 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: CUGGAGGUGGCGCAACCGGUAACAGAGCUGCCUGUGGCGCAGAAGGUCACAGGUUCAAGCCCCGUCUAGAGGA hit 116 : 12669956 12669884 (rev) 21.11 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 : +GUG ::A +GGUA:: ::G:CU U + :C:: AG 2609345 CUGGAGGUGGCGCAACCGGUAACAGAGCUGCCUGUGGCGCAGAAG--------------- 2609389 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C GGUUC A CC G:C+ :A 2609390 ---GuCACAGGUUCAAGCCCCGUCUAGAGGA 2609417 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCGCGCAUGGUUCAGGCGGUAAGAGGUAGGGCUGCGGCUCAGAGGUCCGGGGUUCGACUCCCAGUGGGGGUA hit 117 : 12666120 12666049 (rev) 27.76 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 C C C:UG : :AG +GGUA: : G G :CU + : C AG 2613181 GCGCGCAUGGUUCAGGCGGUAAGAGGUAGGGCUGCGG-CUCAGAG--------------- 2613224 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CC GGGUUCGA UCCC G:G G G A 2613225 ---GuCCGGGGUUCGACUCCCAGUGGGGGUA 2613252 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCCUUAGCUCAGUUGGUAGAGCGUGAGACUUUUAAUCUUAAGGUCAGGGGUUCGAGUCCCCUAGGUGGCU hit 118 : 12541654 12541582 (rev) 77.08 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC CC:U+GC:CAGUUGGUAG:GCG: :GACU U+AAUC: :AG 2737647 GCCUCCUUAGCUCAGUUGGUAGAGCGUGAGACUUUUAAUCUUAAG--------------- 2737691 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA UCCC:::GG GGC 2737692 ---GuCAGGGGUUCGAGUCCCCUAGGUGGCU 2737719 ----endhit ----hitSequence: GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA hit 119 : 12541905 12541824 (rev) 65.77 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G+:::::UGGCC:AG GGU A:GGCGCUGG: U + :CCAG+ ::C: U+ 2737396 GGAGAGAUGGCCGAGC-GGUccAAGGCGCUGGUUUAAGGCACCAGU-CCCU---UC---- 2737446 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 :G::GC::GGGUUCGAAUCCC:::::::+CA 2737447 -GGGGGCGUGGGUUCGAAUCCCACUCUCUUCA 2737477 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: AGCAGCGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGGUGGAUCGAAACCACUCGCUGCUA hit 120 : 12435545 12435474 (rev) 70.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 ::C::CGUG:C:CAGU GG AG:G:GCUGG:C C +AA:CCAGAG 2843756 AGCAGCGUGGCGCAGU-GGAAGCGUGCUGGGCCCAUAACCCAGAG--------------- 2843799 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C ::GG UCGAA CC:: CG::G::A 2843800 ---GuCGGUGGAUCGAAACCACUCGCUGCUA 2843827 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGCGUCGUGGCUCAGUCGGUAAGCGGUUGGGCUAUGAAGCAAAAGGUCCCGGGUUCGGAUCCCCGGAAGCUU hit 121 : 12349601 12349530 (rev) 22.62 bits (((((((,,<<<<________>>>>,.<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGUAggGCG.cugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :C :CGUGGC::AGU+GGU ::GCG :U G CU U AA C A:AG 2929700 GGCGUCGUGGCUCAGUCGGU-AAGCGgUUGGGCUAUGAAGCAAAAG-------------- 2929744 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CC GGGUUCG AUCCC G G: G: 2929745 ----GuCCCGGGUUCGGAUCCCCG-GAAGCUU 2929771 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCGUGCGUGGCUCAGUGGGUAAGAGGUUUGGCUGCUAAGCAGAAGGUCACAGGUUCGAGUUCUCGAGGUCG hit 122 : 12345844 12345774 (rev) 21.59 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G : CGUGGC:CAGU GGU AG:G G: :G CU +AA C: :AG 2933457 GCGUGCGUGGCUCAGUGGGUaAGAG-GUUUGGCUGCUAAGCAGAAG-------------- 2933501 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C C:G UUCGA U C: CG : C+ 2933502 ----GuCACAGGUUCGAGUUCU--CGAGGUCG 2933527 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCGUCCGUGGCGAAUCACCUGUGUAAGGAGAUUGACUAGAAAUCAAUUGGGCUCUGCCCGCGUAGGUUCGAAUCCUGCUGACUGCG hit 123 : 11518842 11518757 (rev) 27.18 bits (((((((,,<<<<____._...__.._>>>>,<<<<<_______>>>>>,,<<<<<<<__ 1 GcCcccgUGGCccAGUU.G...GU..AggGCGcugGaCUcuaAAuCcagAGggccugcUU 54 GC C:UG C :A U+ GU +A:GG G:U:GACU AAAUC:A:+ GG:C U+ 3760459 GCGUCCGUGGC-GAAUCa-ccuGUguAAGGAGAUUGACUAGAAAUCAAUU-GGGC---UC 3760512 __>>>>>>>,,<<<<<_______>>>>>))))))): 55 UggggggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 U G:CCGC:::GGUUCGAAUCC::::G GC+ 3760513 U----GCCCGCGUAGGUUCGAAUCCUGCUGACUGCG 3760544 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGUUCGGUGGUCGAGUGGUGAACGCGUUCGCCUCUUGAGCAGAAGUUUGUGGGUUCGGUUCCCAUACAUGGUUUA hit 124 : 11442221 11442147 (rev) 20.62 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 + :C+ UGG: :AGU GGU A: :CG: G:CUCU++A:C :AG 3837080 GGUUCGGUGGUCGAGU-GGUgAACGCGUUCGCCUCUUGAGCAGAAG-------------- 3837124 >>>>,.,<<<<<_______>>>>..>))))))): 60 ggccG.CcCgGGUUCGAaUCCcG..gcgggGgCa 90 + ::GGGUUCG +UCCC: : +G: + A 3837125 ----UuUGUGGGUUCGGUUCCCAuaCAUGGUUUA 3837154 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCGCUCGCUUUGCAUGCGAGAAGUCUGGGGUUCGAUUCCCCAUACCUCCA hit 125 : 11333982 11333911 (rev) 72.64 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::::U+GC:CAG GGUAG:GCGCU:G: U +A :C:AGA 3945319 GGGGGUAUAGCUCAGG-GGUAGAGCGCUCGCUUUGCAUGCGAGAA--------------- 3945362 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C::GGGUUCGA+UCCC:::::: :CA 3945363 ---GuCUGGGGUUCGAUUCCCCAUACCUCCA 3945390 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 126 : 11157779 11157707 (rev) 80.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC C::GACUCU+AAUC::G+ 4121522 GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 4121566 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 4121567 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 4121594 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCUGGUUCAAUCCCCGGUUCGGCCC hit 127 : 10304744 10304673 (rev) 70.12 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:CC:::UG::C:AGU GGUA:G:: CU:G: U + :C:AGAG 4974557 GGCCGAAUGGUCUAGU-GGUAUGAUUCUCGCUUUGGGUGCGAGAG--------------- 4974600 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCC GGUUC A+ CC GG:::GG:C 4974601 ---GuCCCUGGUUCAAUCCCCGGUUCGGCCC 4974628 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGCCGAAUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGCUCGGCCC hit 128 : 10302132 10302061 (rev) 71.88 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G:CC:: UG::C:AGU GGUA:G:: CU:G: U + :C:AGAG 4977169 GGCCGAAUGGUCUAGU-GGUAUGAUUCUCGCUUUGGGUGCGAGAG--------------- 4977212 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+CCCGGGUUC A+ CCCGG ::GG:C 4977213 ---GuCCCGGGUUCAAUCCCCGGCUCGGCCC 4977240 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCGAUAGCUCAGUUGGGAGAGCGCACGACUGAAGAUCGUGAGGUCACCAGUUCGAUCCUGGUUCGGGGCA hit 129 : 9713200 9713128 (rev) 80.69 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C::U+GC:CAGUUGG AG:GCGC::GACU A+AUC::GAG 5566101 GCCUCGAUAGCUCAGUUGGGAGAGCGCACGACUGAAGAUCGUGAG--------------- 5566145 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C::GUUCGA+ C::G:::G:GGCA 5566146 ---GuCACCAGUUCGAUCCUGGUUCGGGGCA 5566173 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: CAGUCGAUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAGUCAGUGGUUAUCCUUAGGUCGCUGGUUCGAAUCCGGCUCGACGGA hit 130 : 9211791 9211708 (rev) 70.54 bits (((((((,,<<<<________>>>>,<<<<<______..........._>>>>>,,<<<< 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaA...........AuCcagAGggcc 49 : ::C::U+GC:CAGUUGGUAG:GCG::GGACU UA++ + + + ++AUCC::AG 6067510 CAGUCGAUAGCUCAGUUGGUAGAGCGGAGGACUGUAGagucagugguuAUCCUUAG---- 6067565 <<<____>>>>>>>,.,<<<<<_______>>>>>))))))): 50 ugcUUUggggggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGAAUCC:G:::G:: :A 6067566 --------------GuCGCUGGUUCGAAUCCGGCUCGACGGA 6067593 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: AGCACGAUGGCCGAGUGGUUAAGGCGUUGGCCUUAAGUUCCAAUGGUGGAUAACACCGCGUGGGUUCGAACCCCACUCGUGCUA hit 131 : 8631957 8631874 (rev) 69.13 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 ::C:C::UGGCC:AGU GGU+A:GGCG:UGG CU A+ CCA:+GG : U + 6647344 AGCACGAUGGCCGAGU-GGUuAAGGCGUUGGCCUUAAGUUCCAAUGGUGG---AUAA--- 6647396 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 : CGC::GGGUUCGAA CCC::::G:G::A 6647397 CACCGCGUGGGUUCGAACCCCACUCGUGCUA 6647427 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGUUCCAUGGUGUAGCGGUUAGCACUCAGGACUUUGAAUCCUGCGACCCGAGUUCAAAUCUCGGUGGAACCU hit 132 : 7756937 7756866 (rev) 74.76 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G:::CC:UGG:::AG GGU+A:::C C:GGACU U AAUCC:G G 7522364 GGUUCCAUGGUGUAGC-GGUuAGCACUCAGGACUUUGAAUCCUGCG-------------- 7522408 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 CCCG:GUUC AAUC:CGG:GG:::C 7522409 ----ACCCGAGUUCAAAUCUCGGUGGAACCU 7522435 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCA hit 133 : 7002990 7002919 (rev) 69.85 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G: ::::U+GC:CAGU GGUAG:GCGCU::: U +A :::AGAG 8276311 GGGGGUAUAGCUCAGU-GGUAGAGCGCUCCCUUAGCAUGGGAGAG--------------- 8276354 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G C::GGGUUC A+UCCC:::::: :CA 8276355 ---GgCUGGGGUUCAAUUCCCCAUACCUCCA 8276382 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCCGCUGUGGUCAAGUGGCUAAAAAUUUUGCCAUUCACGUAAACGUUCGCUGGUUCAAUCCCUGCGGUGAUA hit 134 : 6358381 6358310 (rev) 20.69 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 C C:GUG : :AGU GG +A: : :U: :C U+A : :A: G 8920920 GCCGCUGUGGUCAAGU-GGCuAAAAAUUUUGCCAUUCACGUAAACG-------------- 8920964 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 +C:C GGUUC A+ CC G: :G G A 8920965 ----UuCGCUGGUUCAAUCCCUGC-GGUGAUA 8920991 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAAGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUACA hit 135 : 5782243 5782173 (rev) 67.58 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 G ::C::UG ::CAGU GGUAG:: GC :G:CU +A :C: G G 9497058 GCAUCGGUGGUUCAGU-GGUAGAAAGCUCGCCUGCCACGCGGGCG--------------- 9497101 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG::G:: CA 9497102 ---GCCCGGGUUCGAUUCCCGGUCGAUACA 9497128 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: AGCACGAUGGCCGAGUGGUUAAGGCGUUGGACUUAAGUUCCAAUGGUGGAUAACACCUCGUGGGUUCGAACCCCACUCGUGCUA hit 136 : 5772960 5772877 (rev) 78.70 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 ::C:C::UGGCC:AGU GGU+A:GGCG:UGGACU A+ UCCA:+GG:: U 9506341 AGCACGAUGGCCGAGU-GGUuAAGGCGUUGGACUUAAGUUCCAAUGGUGG---AUA---- 9506392 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 ::C +C::GGGUUCGAA CCC::::G:G::A 9506393 ACACCuCGUGGGUUCGAACCCCACUCGUGCUA 9506424 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGUCCUAUGGUGUAGUGGUUAUCACGUCUGCUUUACACGCAGAAGAUCGCCGGUUCGAACCCGGCUAGGACCU hit 137 : 5577239 5577167 (rev) 80.90 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 G::CC::UGG:::AGU GGU+A:::CG:::G: U +A :C:::AG 9702062 GGUCCUAUGGUGUAGU-GGUuAUCACGUCUGCUUUACACGCAGAAG-------------- 9702106 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 +C:C:GGUUCGAA CC:G:::GG::C 9702107 ----AuCGCCGGUUCGAACCCGGCUAGGACCU 9702134 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCCGCCAUAGCUCAGUCGGUUAGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCA hit 138 : 5057501 5057428 (rev) 85.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC:CC:U+GC:CAGU+GGU+AG:GCG::GG CU +AA CC::AG 10221800 GCCGCCAUAGCUCAGUCGGUuAGAGCGUGGGUCUAAUAAGCCCAAG-------------- 10221845 >>>>,.,<<<<<_______>>>>>))))))): 60 ggccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA CC:G::GG:GGCA 10221846 ----GuCGCAGGUUCGACCCCUGCUGGCGGCA 10221873 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCAUUUUCCGUU hit 139 : 4565072 4565001 (rev) 47.51 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 ::+ :U+GC:CAGU GGUAG:GCGCU::: U +A :::AGAG 10714229 GGGGGUAUAGCUCAGU-GGUAGAGCGCUCCCUUAGCAUGGGAGAG--------------- 10714272 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G C GGGUUC A+UCCC : +:: 10714273 ---GgCUGGGGUUCAAUUCCCAUUUUCCGUU 10714300 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCAUUGGCUCAGUGGCAGAGCGUCUGUCUAGUAAACAGAAGGUCGCUGGUUCGAUUCCAGCAUGAGGCA hit 140 : 3567673 3567602 (rev) 85.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C::UGGC:CAGU GG AG:GCG:::G:CU +AA:C:::AG 11711628 GCCUCAUUGGCUCAGU-GGCAGAGCGUCUGUCUAGUAAACAGAAG--------------- 11711671 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA+UCC:G:::G:GGCA 11711672 ---GuCGCUGGUUCGAUUCCAGCAUGAGGCA 11711699 ----endhit ----hitSequence: GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 141 : 3567828 3567756 (rev) 80.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC C::GACUCU+AAUC::G+ 11711473 GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 11711517 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 11711518 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 11711545 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGCGUAGUAUAGUGGUUAGUACUCCACGUUGUGGCCGUGGCGACGCUGGUUCGAUUCCAGCCGCAGGCA hit 142 : 3521550 3521479 (rev) 75.43 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 GCC::CGU+G:::AGU GGU+A:::C C:::: U U + ::::G G 11757751 GCCUGCGUAGUAUAGU-GGUuAGUACUCCACGUUGUGGCCGUGGCG-------------- 11757795 >>>>,,<<<<<_______>>>>>))))))): 60 ggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 C:C:GGUUCGA+UCC:G:CG::GGCA 11757796 ----ACGCUGGUUCGAUUCCAGCCGCAGGCA 11757822 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCAUUGGCUCAGUGGCAGAGCGUCUGUCUAGUAAACAGAAGGUCGCUGGUUCGAUUCCAGCAUGAGGCC hit 143 : 3519150 3519079 (rev) 82.42 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C::UGGC:CAGU GG AG:GCG:::G:CU +AA:C:::AG 11760151 GCCUCAUUGGCUCAGU-GGCAGAGCGUCUGUCUAGUAAACAGAAG--------------- 11760194 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA+UCC:G:::G:GGC 11760195 ---GuCGCUGGUUCGAUUCCAGCAUGAGGCC 11760222 ----endhit ----hitSequence: GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 144 : 3519315 3519243 (rev) 80.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC C::GACUCU+AAUC::G+ 11759986 GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 11760030 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 11760031 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 11760058 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCAUUGGCUCAGUGGCAGAGCGUCUGUCUAGUAAACAGAAGGUCGCUGGUUCGAUUCCAGCAUGAGGCA hit 145 : 3439283 3439212 (rev) 85.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCC:C::UGGC:CAGU GG AG:GCG:::G:CU +AA:C:::AG 11840018 GCCUCAUUGGCUCAGU-GGCAGAGCGUCUGUCUAGUAAACAGAAG--------------- 11840061 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:C:GGUUCGA+UCC:G:::G:GGCA 11840062 ---GuCGCUGGUUCGAUUCCAGCAUGAGGCA 11840089 ----endhit ----hitSequence: GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCU hit 146 : 3439459 3439387 (rev) 80.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GCCC++:U+GC:CAGU+GGUAG:GC C::GACUCU+AAUC::G+ 11839842 GCCCGGUUAGCUCAGUCGGUAGAGCACCAGACUCUUAAUCUGGUU--------------- 11839886 >>>,.,<<<<<_______>>>>>))))))): 61 gccG.CcCgGGUUCGAaUCCcGgcgggGgCa 90 G+C:CGGGUUCGA CCCG::++GGGC 11839887 ---GuCGCGGGUUCGAGCCCCGCAUUGGGCU 11839914 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGUCGAUGCA hit 147 : 3062270 3062200 (rev) 78.60 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GcCcccgUGGCccAGUUGGUAggGCGcugGaCUcuaAAuCcagAGggccugcUUUggggg 60 GC::C::UG:::CAGU GGUAG:::GC :G:CU +A :C: G G 12217031 GCAUCGGUGGUUCAGU-GGUAGAAUGCUCGCCUGCCACGCGGGCG--------------- 12217074 >>>,,<<<<<_______>>>>>))))))): 61 gccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 GCCCGGGUUCGA+UCCCGG::G::GCA 12217075 ---GCCCGGGUUCGAUUCCCGGUCGAUGCA 12217101 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA hit 148 : 2861628 2861547 (rev) 65.77 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G+:::::UGGCC:AG GGU A:GGCGCUGG: U + :CCAG+ ::C: U+ 12417673 GGAGAGAUGGCCGAGC-GGUccAAGGCGCUGGUUUAAGGCACCAGU-CCCU---UC---- 12417723 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 :G::GC::GGGUUCGAAUCCC:::::::+CA 12417724 -GGGGGCGUGGGUUCGAAUCCCACUCUCUUCA 12417754 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA hit 149 : 2736355 2736274 (rev) 65.77 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G+:::::UGGCC:AG GGU A:GGCGCUGG: U + :CCAG+ ::C: U+ 12542946 GGAGAGAUGGCCGAGC-GGUccAAGGCGCUGGUUUAAGGCACCAGU-CCCU---UC---- 12542996 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 :G::GC::GGGUUCGAAUCCC:::::::+CA 12542997 -GGGGGCGUGGGUUCGAAUCCCACUCUCUUCA 12543027 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GGAGAGAUGGCCGAGCGGUCCAAGGCGCUGGUUUAAGGCACCAGUCCCUUCGGGGGCGUGGGUUCGAAUCCCACUCUCUUCA hit 150 : 2735873 2735792 (rev) 65.77 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GcCcccgUGGCccAGUUGGU..AggGCGcugGaCUcuaAAuCcagAGggccugcUUUggg 58 G+:::::UGGCC:AG GGU A:GGCGCUGG: U + :CCAG+ ::C: U+ 12543428 GGAGAGAUGGCCGAGC-GGUccAAGGCGCUGGUUUAAGGCACCAGU-CCCU---UC---- 12543478 >>>>>,,<<<<<_______>>>>>))))))): 59 gggccGCcCgGGUUCGAaUCCcGgcgggGgCa 90 :G::GC::GGGUUCGAAUCCC:::::::+CA 12543479 -GGGGGCGUGGGUUCGAAUCCCACUCUCUUCA 12543509 ----endhit ----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta ----sequence: #1,emb|BX284602| Caenorhabditis elegans chromosome II, complete sequence. ----isReversed: 1 ----hitSequence: GAUUUUUUGGCUCAGUCGGUAAGAGGUAUGACUGGUAAGCAAUAGGUCCGGGGUUCGACCCCCAGUGGUGGUA hit 151 : 1476083 1476011 (rev) 22.51 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GcCcccgUGGCccAGUUGGU.AggGCGcugGaCUcuaAAuCcagAGggccugcUUUgggg 59 :: UG C:CAGU+GGU AG:G :U G CU +