Params: ./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-bact.cm /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz 1 specfile data/TRNA2-bact.filterspec Build: release Host: gattaca.cs.washington.edu pid: 8470 ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----specfile: 2struct-str data/tRNAscan/tRNAscan-TRNA2-bact-type1-Ecoli.bin 1/remember-nuc,18,l-AG-C_-U,37,r-A_-C-G-U,57,l-ACGU-_,55,l-ACGU-_,70,l-ACU_-G,69,l-ACU_-G 2struct-str data/tRNAscan/tRNAscan-TRNA2-bact-type1-Ecoli.bin 1/remember-nuc,19,r-ACU_-G,18,l-ACG-U_,17,r-ACU_-G,37,l-A-C-G-U-_,36,l-ACU_-G,56,l-ACGU-_,55,l-ACGU-_,54,r-ACGU-_,70,l-ACU_-G,69,l-ACU_-G,68,l-CU_-AG 2struct-str data/tRNAscan/tRNAscan-TRNA2-bact-type1-Ecoli.bin 1/remember-nuc,19,r-ACU-G-_,18,l-AG-C_-U,17,r-ACU_-G,37,r-A_-C-G-U,36,l-ACU_-G,35,l-AC-U_-G,56,l-ACGU-_,55,l-ACGU-_,54,r-ACGU-_,53,r-ACGU-_,70,l-ACU_-G,69,l-ACU_-G,68,l-CU_-AG,67,l-AG_-CU 2struct-str data/tRNAscan/tRNAscan-TRNA2-bact-type1-Ecoli.bin 1/remember-nuc,19,r-ACU_-G,18,l-AC-G-U-_,17,r-ACU_-G,16,l-ACU_-G,37,r-A_-C-G-U,35,l-A_-C-G-U,34,r-A_-CU-G,56,l-ACGU-_,55,l-ACGU-_,54,r-ACGU-_,53,r-ACGU-_,52,l-ACGU-_,70,l-ACU_-G,69,l-ACU_-G,68,l-A-C-G-U-_,67,l-AG_-CU 2struct-str data/tRNAscan/tRNAscan-TRNA2-bact-type1-Ecoli.bin 1/sub,33,56/sub,16,56/sub,51,40 2struct-str data/tRNAscan/tRNAscan-TRNA2-bact-type1-Ecoli.bin 1/sub,33,56/sub,66,63/sub,51,40/sub,16,56 Exploded HMM has 811 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-bact.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,18,l-AG-C_-U/remember-nuc,37,r-A_-C-G-U/remember-nuc,57,l-ACGU-_/remember-nuc,55,l-ACGU-_/remember-nuc,70,l-ACU_-G/remember-nuc,69,l-ACU_-G Exploded HMM has 1606 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-bact.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,19,r-ACU_-G/remember-nuc,18,l-ACG-U_/remember-nuc,17,r-ACU_-G/remember-nuc,37,l-A-C-G-U-_/remember-nuc,36,l-ACU_-G/remember-nuc,56,l-ACGU-_/remember-nuc,55,l-ACGU-_/remember-nuc,54,r-ACGU-_/remember-nuc,70,l-ACU_-G/remember-nuc,69,l-ACU_-G/remember-nuc,68,l-CU_-AG Exploded HMM has 3270 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-bact.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,19,r-ACU-G-_/remember-nuc,18,l-AG-C_-U/remember-nuc,17,r-ACU_-G/remember-nuc,37,r-A_-C-G-U/remember-nuc,36,l-ACU_-G/remember-nuc,35,l-AC-U_-G/remember-nuc,56,l-ACGU-_/remember-nuc,55,l-ACGU-_/remember-nuc,54,r-ACGU-_/remember-nuc,53,r-ACGU-_/remember-nuc,70,l-ACU_-G/remember-nuc,69,l-ACU_-G/remember-nuc,68,l-CU_-AG/remember-nuc,67,l-AG_-CU Exploded HMM has 6652 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-bact.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,19,r-ACU_-G/remember-nuc,18,l-AC-G-U-_/remember-nuc,17,r-ACU_-G/remember-nuc,16,l-ACU_-G/remember-nuc,37,r-A_-C-G-U/remember-nuc,35,l-A_-C-G-U/remember-nuc,34,r-A_-CU-G/remember-nuc,56,l-ACGU-_/remember-nuc,55,l-ACGU-_/remember-nuc,54,r-ACGU-_/remember-nuc,53,r-ACGU-_/remember-nuc,52,l-ACGU-_/remember-nuc,70,l-ACU_-G/remember-nuc,69,l-ACU_-G/remember-nuc,68,l-A-C-G-U-_/remember-nuc,67,l-AG_-CU ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-bact.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,33,56/sub,16,56/sub,51,40 ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-bact.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-bact.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,33,56/sub,66,63/sub,51,40/sub,16,56 ----cmFile: data/tRNAscan/tRNAscan-TRNA2-bact.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #29,sp|U07776.1|AA07776 Actinobacillus actinomycetemcomitans ATCC 29523 16S rRNA gene and 16S-23S spacer, partial sequence, and tRNA-Glu gene, complete sequence. ----isReversed: 0 ----hitSequence: GUCCCCAUCGUCUAGAGGCCUAGGACAUCGCCCUUUCACGGCGGUAACCGGGGUUCGAAUCCCCGUGGGGACGCCA hit 0 : 105 180 (fwd) 56.25 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GGggcugUAGCUCAGUUGGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAac 58 G:::C::U G:::AG GG +A:::CA C::CCUU +A G::G 105 GUCCCCAUCGUCUAGA-GGCcuAGGACAUCGCCCUUUCACGGCGGUA------------- 150 >>>>>,,<<<<<_______>>>>>))))))):::: 59 cggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 C::GGGUUCGAAUCCC::::G:::C CCA 151 -----ACCGGGGUUCGAAUCCCCGUGGGGACGCCA 180 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #30,sp|U07777.1|AA07777 Actinobacillus actinomycetemcomitans ATCC 33384 16S rRNA gene and 16S-23S spacer, partial sequence, and tRNA-Glu gene, complete sequence. ----isReversed: 0 ----hitSequence: GUCCCCAUCGUCUAGAGGCCUAGGACAUCGCCCUUUCACGGCGGUAACCGGGGUUCGAAUCCCCGUGGGGACGCCA hit 1 : 106 181 (fwd) 56.25 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GGggcugUAGCUCAGUUGGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAac 58 G:::C::U G:::AG GG +A:::CA C::CCUU +A G::G 106 GUCCCCAUCGUCUAGA-GGCcuAGGACAUCGCCCUUUCACGGCGGUA------------- 151 >>>>>,,<<<<<_______>>>>>))))))):::: 59 cggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 C::GGGUUCGAAUCCC::::G:::C CCA 152 -----ACCGGGGUUCGAAUCCCCGUGGGGACGCCA 181 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #31,sp|U07778.1|AA07778 Actinobacillus actinomycetemcomitans ATCC 29522 16S rRNA and 23S rRNA genes, partial sequence, 16S-23S spacer and tRNA-Glu gene, complete sequence. ----isReversed: 0 ----hitSequence: GUCCCCAUCGUCUAGAGGCCUAGGACAUCGCUCUUUCACGGCGGUAACCGGGGUUCGAAUCCCCGUGGGGACGCCA hit 2 : 111 186 (fwd) 50.63 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GGggcugUAGCUCAGUUGGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAac 58 G:::C::U G:::AG GG +A:::CA C:: CUU +A ::G 111 GUCCCCAUCGUCUAGA-GGCcuAGGACAUCGCUCUUUCACGGCGGUA------------- 156 >>>>>,,<<<<<_______>>>>>))))))):::: 59 cggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 C::GGGUUCGAAUCCC::::G:::C CCA 157 -----ACCGGGGUUCGAAUCCCCGUGGGGACGCCA 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #77,sp|AJ007831.1|AAC7831 Acetobacter aceti internal transcribed spacer 1 (ITS1), type strain DSM 3508 ----isReversed: 0 ----hitSequence: GGGGGCAUAGCUCAGCUGGGAGAGCACCUGCUUUGCAAGCAGGGGGUCGUCGGUUCGAACCCGUCUGCCUCCACCA hit 3 : 280 355 (fwd) 91.82 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+G:::UAGCUCAG+UGG AGAGCACCUGC+UU +AAGCAGG+G 280 GGGGGCAUAGCUCAGCUGGGAGAGCACCUGCUUUGCAAGCAGGGG--------------- 324 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG :GGUUCGAA CC: C:::C+CCACCA 325 ---GuCGUCGGUUCGAACCCGUCUGCCUCCACCA 355 ----endhit ----hitSequence: GGGCUAGUAGCUCAGUUGGUUAGAGCACACGCUUGAUAAGCGUGGGGUCGGAGGUUCAAGUCCUCCCUGGCCCACCA hit 4 : 198 274 (fwd) 98.93 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:::GUAGCUCAGUUGGU+AGAGCAC::GC+U+AUAAGC::G+G 198 GGGCUAGUAGCUCAGUUGGUuAGAGCACACGCUUGAUAAGCGUGGG-------------- 243 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUC+A+UCC::CC:::CCCACCA 244 ----GuCGGAGGUUCAAGUCCUCCCUGGCCCACCA 274 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #143,sp|U60280.1|AAU60280 Acinetobacter ATCC19004 16S-23S ribosomal RNA intergenic spacer, including Ile-tRNA and Ala-tRNA genes. ----isReversed: 0 ----hitSequence: GGGGACUUAGCUUAGUUGGUAGAGCGCCUGCUUUGCACGCAGGAGGUCAGGAGUUCGACUCUCCUAGUCUCCACCA hit 5 : 203 278 (fwd) 89.89 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+G:::UAGCU:AGUUGGUA:AGC+CCUGC+UU +A GCAGGAG 203 GGGGACUUAGCUUAGUUGGUAGAGCGCCUGCUUUGCACGCAGGAG--------------- 247 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::G:GUUCGA UC:C:::::C+CCACCA 248 ---GuCAGGAGUUCGACUCUCCUAGUCUCCACCA 278 ----endhit ----hitSequence: GGGUCUGUAGCUCAGUUGGUUAGAGCACACGCUUGAUAAGCGUGGGGUCACAAGUUCAAGUCUUGUCAGACCCACCA hit 6 : 71 147 (fwd) 98.52 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CUGUAGCUCAGUUGGU+AGAGCAC::GC+U+AUAAGC::G+G 71 GGGUCUGUAGCUCAGUUGGUuAGAGCACACGCUUGAUAAGCGUGGG-------------- 116 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C::GUUC+A+UC::G:CAG:CCCACCA 117 ----GuCACAAGUUCAAGUCUUGUCAGACCCACCA 147 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #144,sp|U60281.1|AAU60281 Acinetobacter ATCC17903 16S-23S ribosomal RNA intergenic spacer, including Ile-tRNA and Ala-tRNA genes. ----isReversed: 0 ----hitSequence: GGGGACUUAGCUUAGUUGGUAGAGCGCCUGCUUUGCACGCAGGAGGUCAGGAGUUCGACUCUCCUAGUCUCCACCA hit 7 : 203 278 (fwd) 89.89 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+G:::UAGCU:AGUUGGUA:AGC+CCUGC+UU +A GCAGGAG 203 GGGGACUUAGCUUAGUUGGUAGAGCGCCUGCUUUGCACGCAGGAG--------------- 247 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::G:GUUCGA UC:C:::::C+CCACCA 248 ---GuCAGGAGUUCGACUCUCCUAGUCUCCACCA 278 ----endhit ----hitSequence: GGGUCUGUAGCUCAGUUGGUUAGAGCACACGCUUGAUAAGCGUGGGGUCACAAGUUCAAGUCUUGUCAGACCCACCA hit 8 : 71 147 (fwd) 98.52 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CUGUAGCUCAGUUGGU+AGAGCAC::GC+U+AUAAGC::G+G 71 GGGUCUGUAGCUCAGUUGGUuAGAGCACACGCUUGAUAAGCGUGGG-------------- 116 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C::GUUC+A+UC::G:CAG:CCCACCA 117 ----GuCACAAGUUCAAGUCUUGUCAGACCCACCA 147 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #393,sp|AB004562.1|AB004562 Rhizobium leguminosarum bv. trifolii gene for tRNA-Thr, complete sequence, integration site. ----isReversed: 0 ----hitSequence: GCUGCCGUAGCUCAGUGGUAGAGCACACCCUUGGUAAGGGUGAGGUCGGUGGUUCAAUCCCACUCGGCAGCACCA hit 9 : 1417 1491 (fwd) 90.84 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G::GC:GUAGCUCAGU GGUAGAGCAC:::C+U+ UAAG:::GAG 1417 GCUGCCGUAGCUCAGU-GGUAGAGCACACCCUUGGUAAGGGUGAG--------------- 1460 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUC+A CC:::C:GC::CACCA 1461 ---GuCGGUGGUUCAAUCCCACUCGGCAGCACCA 1491 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #997,sp|AB010267.1|AB010267 Rhizobium leguminosarum tRNA gene, complete sequence, integration site. ----isReversed: 0 ----hitSequence: GCUGCCGUAGCUCAGUGGUAGAGCACACCCUUGGUAAGGGUGAGGUCGGUGGUUCAAUCCCACUCGGCAGCACCA hit 10 : 77 151 (fwd) 90.84 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G::GC:GUAGCUCAGU GGUAGAGCAC:::C+U+ UAAG:::GAG 77 GCUGCCGUAGCUCAGU-GGUAGAGCACACCCUUGGUAAGGGUGAG--------------- 120 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUC+A CC:::C:GC::CACCA 121 ---GuCGGUGGUUCAAUCCCACUCGGCAGCACCA 151 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #1058,sp|AB010645.1|AB010645 Acetobacter xylinus genes for endoglucanase, cellulose synthase subunit ABCD and beta-glucosidase, complete cds. ----isReversed: 0 ----hitSequence: GUCCCGUUCGUCUAGAGGCCUAGGACACUGCCCUCUCACGGCGGCAACAGGGGUUCGAAUCCCCUACGGGACGCCA hit 11 : 130 205 (fwd) 56.38 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GGggcugUAGCUCAGUUGGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAac 58 G:::C::U G:::AG GG +A:::CAC ::CCU +A G:: G 130 GUCCCGUUCGUCUAGA-GGCcuAGGACACUGCCCUCUCACGGCGGCA------------- 175 >>>>>,,<<<<<_______>>>>>))))))):::: 59 cggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 C::GGGUUCGAAUCCC::::G:::C CCA 176 -----ACAGGGGUUCGAAUCCCCUACGGGACGCCA 205 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #1672,sp|AB013372.1|AB013372 Bacillus halodurans C-125 tRNA-Arg gene, complete sequence. ----isReversed: 0 ----hitSequence: GCGCCCGUAGCUCAAUUGGAUAGAGCGUUUGACUACGGAUCAAAAGGUUAGGGGUUCGACUCCUCUCGGGCGCGCCA hit 12 : 8 84 (fwd) 81.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G:C:GUAGCUCA UUGG +AGAGC+::UG:CU A:CA::AG 8 GCGCCCGUAGCUCAAUUGGAuAGAGCGUUUGACUACGGAUCAAAAG-------------- 53 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :: GGUUCGA UCC ::C:G:C:C CCA 54 ----GuUAGGGGUUCGACUCCUCUCGGGCGCGCCA 84 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #1673,sp|AB013373.1|AB013373 Bacillus halodurans C-125 23S, 5S and 16S rRNA genes and tRNA-Ala, Arg, Gly, Leu, Lys, Pro, Thr and Val genes region. ----isReversed: 0 ----hitSequence: GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCACCA hit 13 : 4118 4193 (fwd) 92.92 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+GC::UAGCUCAG+UGG AGAGC+CCUGC+UU +A GCAGGAG 4118 GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAG--------------- 4162 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA CC:::::GC+CCACCA 4163 ---GuCAGCGGUUCGAUCCCGCUAGGCUCCACCA 4193 ----endhit ----hitSequence: CGGGAAGUAGCUCAGCUUGGUAGAGCACUUGGUUUGGGACCAAGGGGUCGCAGGUUCAAAUCCUGUCUUCCCGACCA hit 14 : 4038 4114 (fwd) 94.02 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUU.GGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 +GGG::GUAGCUCAG+U+GGUAGAGCAC:UG:+UU A:CA:G+G 4038 CGGGAAGUAGCUCAGCUuGGUAGAGCACUUGGUUUGGGACCAAGGG-------------- 4083 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUC+AAUCC:G:C::CCC+ACCA 4084 ----GuCGCAGGUUCAAAUCCUGUCUUCCCGACCA 4114 ----endhit ----hitSequence: GCGCCCGUAGCUCAAUUGGAUAGAGCGUUUGACUACGGAUCAAAAGGUUAGGGGUUCGACUCCUCUCGGGCGCGCCA hit 15 : 3956 4032 (fwd) 81.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G:C:GUAGCUCA UUGG +AGAGC+::UG:CU A:CA::AG 3956 GCGCCCGUAGCUCAAUUGGAuAGAGCGUUUGACUACGGAUCAAAAG-------------- 4001 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :: GGUUCGA UCC ::C:G:C:C CCA 4002 ----GuUAGGGGUUCGACUCCUCUCGGGCGCGCCA 4032 ----endhit ----hitSequence: GCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCCCUCGGCACCA hit 16 : 3852 3940 (fwd) 76.50 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G::G :GU+G:::A UUGG :::CAC::G:CUUA AA:C::G G:::G GU A C 3852 GCCGGGGUGGUGGAAUUGGCaGACACACAGGACUUAAAAUCCUGC-GGUAG--GUGA--C 3906 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 :::CG GC:GGUUC+A+UCC:GCC: C::CACCA 3907 UACCGUGCCGGUUCAAGUCCGGCCCUCGGCACCA 3940 ----endhit ----hitSequence: GCGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAAUCCCGUCUUCCGCUCCA hit 17 : 3754 3828 (fwd) 94.92 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G:GG::GUAG:UCAGU GGUAGA:CACC::C+U+ +AAG::GG+G 3754 GCGGAAGUAGUUCAGU-GGUAGAACACCACCUUGCCAAGGUGGGG--------------- 3797 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:CGGGUUCGAAUCCCG:C::CC:C CCA 3798 ---GuCGCGGGUUCGAAUCCCGUCUUCCGCUCCA 3828 ----endhit ----hitSequence: GCGGGUGUGGCGGAAUUGGCAGACGCGCUAGACUUAGGAUCUAGUGUCCUUGUGACGUGGGGGUUCGACUCCCUUCACCCGCACCA hit 18 : 3662 3747 (fwd) 71.46 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____.>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAA.ac 58 G:GG:UGU+GC::A UUGG ::GC+C::G:CUUA A:C::G GUC U 3662 GCGGGUGUGGCGGAAUUGGCaGACGCGCUAGACUUAGGAUCUAGU-GUC----CUUGu-- 3714 >>>>>,,<<<<<_______>>>>>))))))):::: 59 cggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 GACG :+GGGUUCGA UCCC+:CA:CC:CACCA 3715 --GACGUGGGGGUUCGACUCCCUUCACCCGCACCA 3747 ----endhit ----hitSequence: GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA hit 19 : 3578 3653 (fwd) 98.66 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G:G:C::UAGCUCAGUUGGUAGAGCA:CUG:CUU UAA:CAG:+G 3578 GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGG--------------- 3622 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUCGA+UCC::C::G:C:CACCA 3623 ---GuCGAAGGUUCGAGUCCUUCAUGGCUCACCA 3653 ----endhit ----hitSequence: GCCGGUCUAGCUCAAUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCA hit 20 : 3498 3570 (fwd) 82.35 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G::G: :UAGCUCA UUGGUAGAGCA:CUG:CUU UAA:CAG:AG 3498 GCCGGUCUAGCUCAAUUGGUAGAGCAACUGACUUGUAAUCAGUAG--------------- 3542 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :: GGUUC+A+UCC ::: :C::CA 3543 ---GuUGGGGGUUCAAGUCCUCUGGCCGGCA--- 3570 ----endhit ----hitSequence: GGAGGGUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGGGUCGGCGGUUCGAUCCCGUCACCCUCCACCA hit 21 : 3381 3456 (fwd) 97.14 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG:G:::UAGCUCAG+UGG AGAGCACCUGCCUUA+AAGCAGG+G 3381 GGAGGGUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGG--------------- 3425 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG+:GGUUCGA CC:+C:::C:CCACCA 3426 ---GuCGGCGGUUCGAUCCCGUCACCCUCCACCA 3456 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #1676,sp|AB013376.1|AB013376 Bacillus halodurans C-125 appA gene, complete and partial cds. ----isReversed: 1 ----hitSequence: GCGCCUAUGGUGAAAGGGAUAUCACACGAGAUUCCGGUUCUCGCGUUGUGGGUUCGAAUCCUGCUAGGCGCGCCA hit 22 : 97 23 (rev) 60.65 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G:CU:U+G:: A GG +A ::CAC::G:+U :C::G 2682 GCGCCUAUGGUGAAAG-GGAuAUCACACGAGAUUCCGGUUCUCGC--------------- 2725 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ G: GGUUCGAAUCC :C:AG:C:C CCA 2726 ----GuUGUGGGUUCGAAUCCUGCUAGGCGCGCCA 2756 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #1677,sp|AB013377.1|AB013377 Bacillus halodurans C-125 comGB and bsaA genes and tRNA-His, Ala, Arg, Gly and Tyr genes, complete and partial cds. ----isReversed: 0 ----hitSequence: GCGCCCGUAGCUCAAUUGGAUAGAGCGUUUGACUACGGAUCAAAAGGUUAGGGGUUCGACUCCUCUCGGGCGCGCCA hit 23 : 1999 2075 (fwd) 81.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G:C:GUAGCUCA UUGG +AGAGC+::UG:CU A:CA::AG 1999 GCGCCCGUAGCUCAAUUGGAuAGAGCGUUUGACUACGGAUCAAAAG-------------- 2044 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :: GGUUCGA UCC ::C:G:C:C CCA 2045 ----GuUAGGGGUUCGACUCCUCUCGGGCGCGCCA 2075 ----endhit ----hitSequence: GCGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAAUCCCGUCUUCCGCUCCA hit 24 : 1923 1997 (fwd) 94.92 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G:GG::GUAG:UCAGU GGUAGA:CACC::C+U+ +AAG::GG+G 1923 GCGGAAGUAGUUCAGU-GGUAGAACACCACCUUGCCAAGGUGGGG--------------- 1966 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:CGGGUUCGAAUCCCG:C::CC:C CCA 1967 ---GuCGCGGGUUCGAAUCCCGUCUUCCGCUCCA 1997 ----endhit ----hitSequence: UGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUGAUGCGCUGGUUCGAAUCCAGCUAGCCCAGCCA hit 25 : 1844 1918 (fwd) 78.94 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 :GGGCU:UAGC::AG+ GGUA::GCA:C:G:CUU A :C:G:+ 1844 UGGGCUAUAGCCAAGC-GGUAAGGCAACGGACUUUGACUCCGUGA--------------- 1887 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 CGC:GGUUCGAAUCC:GC:AGCCC: CCA 1888 ---UgCGCUGGUUCGAAUCCAGCUAGCCCAGCCA 1918 ----endhit ----hitSequence: GCGACUGUGGCGAAGUGGUUAACGCACCGGAUUGUGGCUCCGGCACUCGUGGGUUCGAUUCCCAUCAGUCGCCCCA hit 26 : 1753 1828 (fwd) 78.02 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G:CUGU+GC::AGU GGU+A::GCACC:G:+U+ :C:GG 1753 GCGACUGUGGCGAAGU-GGUuAACGCACCGGAUUGUGGCUCCGGCA-------------- 1797 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 +C::GGGUUCGA UCCC::CAG:C:C CCA 1798 ----CuCGUGGGUUCGAUUCCCAUCAGUCGCCCCA 1828 ----endhit ----hitSequence: GGAGGGGUAGCGAAGUGGCUAAACGCGGCGGACUGUAAAUCCGCUCCCUCAGGGUUCGGCGGUUCGAAUCCGUCCCCCUCCACCA hit 27 : 1656 1740 (fwd) 80.72 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GGggcugUAGCUCAGUUGGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAac 58 GG:G::GUAGC::AGU GG + A::GC+:C:G:CU+ AA:C:G: ::C + A 1656 GGAGGGGUAGCGAAGU-GGCuaAACGCGGCGGACUGUAAAUCCGCU-CCC----UCA--- 1706 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 cggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G:: +CG+:GGUUCGAAUCC:+CC::C:CCACCA 1707 --GGGUuCGGCGGUUCGAAUCCGUCCCCCUCCACCA 1740 ----endhit ----hitSequence: CGCGGGGUGGAGCAGUCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGGCGGUUCAAAUCCGUCCCCCGCAACCA hit 28 : 1574 1650 (fwd) 87.70 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUU.GGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G::GU+G::CAGU +GGUAG::C+:C:G:CU AUAA:C:G:AG 1574 CGCGGGGUGGAGCAGUCuGGUAGCUCGUCGGGCUCAUAACCCGAAG-------------- 1619 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG+:GGUUC+AAUCC:+CC::C:C ACCA 1620 ----GuCGGCGGUUCAAAUCCGUCCCCCGCAACCA 1650 ----endhit ----hitSequence: GGAGGAGUACCCAAGUCUGGCUGAAGGGAUCGGUCUUGAAAACCGACAGGCGGGUUAAACCGCGCGGGGGUUCGAAUCCCUCCUCCUCCGCCA hit 29 : 1310 1402 (fwd) 79.08 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GGggcugUAGCUCAGUU.GGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAa 57 GG:G::GUA C::AGU +GG + A::G A:C:G:CUU AA:C:G: +:C:G+ +UAA 1310 GGAGGAGUACCCAAGUCuGGCugAAGGGAUCGGUCUUGAAAACCGACAGGCGGG-UUAA- 1367 >>>>>>,,<<<<<_______>>>>>))))))):::: 58 ccggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 +C:G:+ CG+GGGUUCGAAUCCC+CC::C:CC CCA 1368 ACCGCG-CGGGGGUUCGAAUCCCUCCUCCUCCGCCA 1402 ----endhit ----hitSequence: GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCACCA hit 30 : 1217 1292 (fwd) 92.92 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+GC::UAGCUCAG+UGG AGAGC+CCUGC+UU +A GCAGGAG 1217 GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAG--------------- 1261 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA CC:::::GC+CCACCA 1262 ---GuCAGCGGUUCGAUCCCGCUAGGCUCCACCA 1292 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2102,sp|AB015357.1|AB015357 Microcystis sp. DNA, 16S-23S ITS sequence, strain 4A3. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 31 : 132 208 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 132 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 177 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 178 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 208 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2103,sp|AB015358.1|AB015358 Microcystis sp. DNA, 16S-23S ITS sequence, strain 4B3. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 32 : 132 208 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 132 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 177 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 178 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 208 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2104,sp|AB015359.1|AB015359 Microcystis sp. DNA, 16S-23S ITS sequence, strain T1-4. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 33 : 132 208 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 132 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 177 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 178 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 208 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2105,sp|AB015360.1|AB015360 Microcystis sp. DNA, 16S-23S ITS sequence, strain T17-1. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 34 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2106,sp|AB015361.1|AB015361 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain NIES44. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 35 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2107,sp|AB015362.1|AB015362 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain TAC71. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 36 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2108,sp|AB015363.1|AB015363 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain TAC86. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 37 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2109,sp|AB015364.1|AB015364 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain TAC87. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 38 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2110,sp|AB015365.1|AB015365 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain TAC170. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 39 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2111,sp|AB015366.1|AB015366 Microcystis ichthyoblabe DNA, 16S-23S ITS sequence, strain TAC48. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 40 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2112,sp|AB015367.1|AB015367 Microcystis ichthyoblabe DNA, 16S-23S ITS sequence, strain TAC91. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 41 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2113,sp|AB015368.1|AB015368 Microcystis ichthyoblabe DNA, 16S-23S ITS sequence, strain TAC125. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 42 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2114,sp|AB015369.1|AB015369 Microcystis ichthyoblabe DNA, 16S-23S ITS sequence, strain TAC136. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 43 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2115,sp|AB015370.1|AB015370 Microcystis ichthyoblabe DNA, 16S-23S ITS sequence, strain TAC138. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 44 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2116,sp|AB015371.1|AB015371 Microcystis ichthyoblabe DNA, 16S-23S ITS sequence, strain NL1. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 45 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2117,sp|AB015372.1|AB015372 Microcystis ichthyoblabe DNA, 16S-23S ITS sequence, strain TC2. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 46 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2118,sp|AB015373.1|AB015373 Microcystis ichthyoblabe DNA, 16S-23S ITS sequence, strain TC9. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 47 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2119,sp|AB015374.1|AB015374 Microcystis novacekii DNA, 16S-23S ITS sequence, strain TAC20. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 48 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2120,sp|AB015375.1|AB015375 Microcystis novacekii DNA, 16S-23S ITS sequence, strain TAC65. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 49 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2121,sp|AB015376.1|AB015376 Microcystis novacekii DNA, 16S-23S ITS sequence, strain TAC66. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 50 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2122,sp|AB015377.1|AB015377 Microcystis novacekii DNA, 16S-23S ITS sequence, strain BC18. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 51 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2123,sp|AB015378.1|AB015378 Microcystis novacekii DNA, 16S-23S ITS sequence, strain CC2. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 52 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2124,sp|AB015379.1|AB015379 Microcystis novacekii DNA, 16S-23S ITS sequence, strain T20-3. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 53 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2125,sp|AB015380.1|AB015380 Microcystis novacekii DNA, 16S-23S ITS sequence, strain TL2. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 54 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2126,sp|AB015381.1|AB015381 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain CL1. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 55 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2127,sp|AB015382.1|AB015382 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain CL3. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 56 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2128,sp|AB015383.1|AB015383 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain CC1. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 57 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2129,sp|AB015384.1|AB015384 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain T20-1. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 58 : 135 211 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2130,sp|AB015385.1|AB015385 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain TC6. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 59 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2131,sp|AB015386.1|AB015386 Microcystis aeruginosa DNA, 16S-23S ITS sequence, strain TC8. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAAGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 60 : 135 211 (fwd) 82.07 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GA 135 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAA-------------- 180 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 181 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2132,sp|AB015387.1|AB015387 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain NIES44. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 61 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2133,sp|AB015388.1|AB015388 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain NIES111. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 62 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2134,sp|AB015389.1|AB015389 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain TAC38. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 63 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2135,sp|AB015390.1|AB015390 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain TAC52. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 64 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2136,sp|AB015391.1|AB015391 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain TAC57. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 65 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2137,sp|AB015392.1|AB015392 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain CL5. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 66 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2138,sp|AB015393.1|AB015393 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain NC1. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 67 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2139,sp|AB015394.1|AB015394 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain NC2. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 68 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2140,sp|AB015395.1|AB015395 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain NC3. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 69 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2141,sp|AB015396.1|AB015396 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain NC4. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 70 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2142,sp|AB015397.1|AB015397 Microcystis wesenbergii DNA, 16S-23S ITS sequence, strain NC5. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 71 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2143,sp|AB015398.1|AB015398 Microcystis viridis DNA, 16S-23S ITS sequence, strain TAC17. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 72 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2144,sp|AB015399.1|AB015399 Microcystis viridis DNA, 16S-23S ITS sequence, strain TAC44. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 73 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2145,sp|AB015400.1|AB015400 Microcystis viridis DNA, 16S-23S ITS sequence, strain TAC45. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 74 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2146,sp|AB015401.1|AB015401 Microcystis viridis DNA, 16S-23S ITS sequence, strain TAC78. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 75 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2147,sp|AB015402.1|AB015402 Microcystis viridis DNA, 16S-23S ITS sequence, strain TAC92. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 76 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2148,sp|AB015403.1|AB015403 Microcystis viridis DNA, 16S-23S ITS sequence, strain TAC93. ----isReversed: 0 ----hitSequence: GGGCUAUUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCCCUGGUUCGAGUCCAGGAUGGCCCACCU hit 77 : 133 209 (fwd) 84.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG::::UAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 133 GGGCUAUUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 178 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUCGA+UCC:G:::::CCCACC 179 ----GuCCCUGGUUCGAGUCCAGGAUGGCCCACCU 209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2519,sp|AB016600.2|AB016600 Selenomonas ruminantium gene for phosphoenolpyruvate carboxykinase, complete cds. ----isReversed: 0 ----hitSequence: GCCGAUUUAGCUCAGGUCGGUAAAGCAACGCACUCGUAACGCGUAGGUCGUAGGUUCAAUUCCUGCAAUCGGCA hit 78 : 3249 3322 (fwd) 70.19 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUU.GGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G::G:U:UAGCU AG U+GGUA AGCA:C:: CU UAA ::G:AG 3249 GCCGAUUUAGCUCAGGUcGGUAAAGCAACGCACUCGUAACGCGUAG-------------- 3294 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUC+A UCC::C:A:C::CA 3295 ----GuCGUAGGUUCAAUUCCUGCAAUCGGCA--- 3322 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2592,sp|AB017045.1|AB017045 Paracoccus denitrificans phaZ, phaC, phaP, phaR genes for intracellular poly(3-hydroxyalkanoate) depolymerase, poly (3-hydroxyalkanoate) synthase, granule-associated protein, PHA responsive repressor, complete cds. ----isReversed: 0 ----hitSequence: GGACGGUUGGCCGAGUGGUCGAAGGCGCACGCCUGGAAAGUGUGUAGGCGGGGAACCGUCUCGAGGGUUCGAAUCCCUCACCGUCCGCCA hit 79 : 5363 5452 (fwd) 71.63 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GGggcugUAGCUCAGUUGGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAac 58 GG:::::U+GC::AGU GGU A::GC+C:: CCU+ AAG ::G G C:G G AA 5363 GGACGGUUGGCCGAGU-GGUcgAAGGCGCACGCCUGGAAAGUGUGUAGGCGG--GGAA-- 5417 >>>>>,,<<<<<_______>>>>>))))))):::: 59 cggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 C:G C CG:GGGUUCGAAUCCC:C:::::CC CCA 5418 CCGUCUCGAGGGUUCGAAUCCCUCACCGUCCGCCA 5452 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2820,sp|AB019793.1|AB019793 Liberobacter asiaticum gene for 16S rRNA and 16S/23S intergenic spacer region, partial sequence. ----isReversed: 0 ----hitSequence: GGGGCCGUAGCUCAGUCGGUAGAGCGCCUGCUUUGCAAGCAGGAUGCCAGCGGUUCGAUUCCGCUCGGCUCCACCA hit 80 : 570 645 (fwd) 92.33 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+GC:GUAGCUCAGU GGUAGAGC+CCUGC+UU +AAGCAGGA 570 GGGGCCGUAGCUCAGUCGGUAGAGCGCCUGCUUUGCAAGCAGGAU--------------- 614 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G C:::GGUUCGA UCC:::C:GC+CCACCA 615 ---GcCAGCGGUUCGAUUCCGCUCGGCUCCACCA 645 ----endhit ----hitSequence: GGGCCCGUAGCUCAGGUGGUUAGAGUGCACCCCUGAUAAGGGUGAGGUCGGUAGUUCAAAUCUACCUGGGCCCACCA hit 81 : 481 557 (fwd) 85.82 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:C::UA CUCAG UGGU+AGAG +C:::CCU+AUAAG:::GAG 481 GGGCCCGUAGCUCAGGUGGUuAGAGUGCACCCCUGAUAAGGGUGAG-------------- 526 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG:::GUUC+AAUC:::C::G:CCCACCA 527 ----GuCGGUAGUUCAAAUCUACCUGGGCCCACCA 557 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #2966,sp|AB020535.1|AB020535 Wolbachia sp. wTai DNA, insertion sequence ISW1 next to orfC, partial cds. ----isReversed: 0 ----hitSequence: AGCUCGGUAGCUCGUCAGGCUCAUAACCUGAAGGUCGUAGGUUCAAAUCCUACUCCCGCAACCA hit 82 : 2 65 (fwd) 24.69 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G: ::UAG +U C+:C:G:CU AUAA:C:G:AG 2 AGCUCGGUAG-----CU-------CGUCAGGCUCAUAACCUGAAG--------------- 34 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUC+AAUCC::C:: :C ACCA 35 ---GuCGUAGGUUCAAAUCCUACUCCCGCAACCA 65 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3286,sp|AB022061.1|AB022061 Pectinatus cerevisiiphilus DNA, 16S/23S rRNA intergenic spacer region. ----isReversed: 0 ----hitSequence: GGGCCUAUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCAGUAGUUCAAGUCUACUUAGGCCCACCA hit 83 : 330 406 (fwd) 97.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CU:UAGCUCAG+UGGU+AGAGC+C::GCCU+AUAAGC::GAG 330 GGGCCUAUAGCUCAGCUGGUuAGAGCGCACGCCUGAUAAGCGUGAG-------------- 375 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::::GUUC+A+UC:::::AG:CCCACCA 376 ----GuCAGUAGUUCAAGUCUACUUAGGCCCACCA 406 ----endhit ----hitSequence: GGGGGCGUAGCUCAGAUGGGAGAGCACCUGCCUUGCAAGCAGGGGGUCAGGAGUUCAACUCUCCUCGUCUCCACCA hit 84 : 245 320 (fwd) 86.30 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+G :GUAGCUCAG UGG AGAGCACCUGCCUU +AAGCAGG+G 245 GGGGGCGUAGCUCAGAUGGGAGAGCACCUGCCUUGCAAGCAGGGG--------------- 289 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::G:GUUC+A UC:C::C: C+CCACCA 290 ---GuCAGGAGUUCAACUCUCCUCGUCUCCACCA 320 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3288,sp|AB022063.1|AB022063 Pectinatus frisingensis DNA, 16S/23S rRNA intergenic spacer region. ----isReversed: 0 ----hitSequence: GGGCCUAUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCAGUAGUUCAAGUCUACUUAGGCCCACCA hit 85 : 229 305 (fwd) 97.28 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CU:UAGCUCAG+UGGU+AGAGC+C::GCCU+AUAAGC::GAG 229 GGGCCUAUAGCUCAGCUGGUuAGAGCGCACGCCUGAUAAGCGUGAG-------------- 274 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::::GUUC+A+UC:::::AG:CCCACCA 275 ----GuCAGUAGUUCAAGUCUACUUAGGCCCACCA 305 ----endhit ----hitSequence: GGGGGCGUAGCUCAGCUGGGAGAGCACCUGCCUUGCAAGCAGGGGGUCAGGAGUUCAAAUCUCCUCGUCUCCACCA hit 86 : 143 218 (fwd) 92.62 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+G :GUAGCUCAG+UGG AGAGCACCUGCCUU +AAGCAGG+G 143 GGGGGCGUAGCUCAGCUGGGAGAGCACCUGCCUUGCAAGCAGGGG--------------- 187 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::G:GUUC+AAUC:C::C: C+CCACCA 188 ---GuCAGGAGUUCAAAUCUCCUCGUCUCCACCA 218 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3291,sp|AB022066.1|AB022066 Zymophilus paucivorans DNA, 16S/23S rRNA intergenic spacer region. ----isReversed: 0 ----hitSequence: GGGGGCGUAGCUCAGAUGGGAGAGCACCUGCCUUGCAAGCAGGGGGUCAAGAGUUCGAUUCUCUUCGUCUCCACCA hit 87 : 263 338 (fwd) 89.35 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+G :GUAGCUCAG UGG AGAGCACCUGCCUU +AAGCAGG+G 263 GGGGGCGUAGCUCAGAUGGGAGAGCACCUGCCUUGCAAGCAGGGG--------------- 307 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::G:GUUCGA UC:C::C: C+CCACCA 308 ---GuCAAGAGUUCGAUUCUCUUCGUCUCCACCA 338 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3293,sp|AB022068.1|AB022068 Zymophilus raffinosivorans DNA, 16S/23S rRNA intergenic spacer region. ----isReversed: 0 ----hitSequence: GGGGGCGUAGCUCAGAUGGGAGAGCACCUGCCUUGCAAGCAGGGGGUCAAGAGUUCGAUUCUCUUCGUCUCCACCA hit 88 : 301 376 (fwd) 89.35 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+G :GUAGCUCAG UGG AGAGCACCUGCCUU +AAGCAGG+G 301 GGGGGCGUAGCUCAGAUGGGAGAGCACCUGCCUUGCAAGCAGGGG--------------- 345 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::G:GUUCGA UC:C::C: C+CCACCA 346 ---GuCAAGAGUUCGAUUCUCUUCGUCUCCACCA 376 ----endhit ----hitSequence: GGGCCUAUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCAAUAGUUCAAGUCUAUUUAGGCCCACCA hit 89 : 183 259 (fwd) 96.88 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CU:UAGCUCAG+UGGU+AGAGC+C::GCCU+AUAAGC::GAG 183 GGGCCUAUAGCUCAGCUGGUuAGAGCGCACGCCUGAUAAGCGUGAG-------------- 228 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::::GUUC+A+UC:::::AG:CCCACCA 229 ----GuCAAUAGUUCAAGUCUAUUUAGGCCCACCA 259 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3295,sp|AB022094.1|AB022094 Selenomonas lacticifex DNA, 16S/23S rRNA intergenic spacer region. ----isReversed: 0 ----hitSequence: GGGCCUAUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCAAUAGUUCAAGUCUAUUUAGGCCCACCA hit 90 : 326 402 (fwd) 96.88 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CU:UAGCUCAG+UGGU+AGAGC+C::GCCU+AUAAGC::GAG 326 GGGCCUAUAGCUCAGCUGGUuAGAGCGCACGCCUGAUAAGCGUGAG-------------- 371 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::::GUUC+A+UC:::::AG:CCCACCA 372 ----GuCAAUAGUUCAAGUCUAUUUAGGCCCACCA 402 ----endhit ----hitSequence: GGGGGCGUAGCUCAGCUGGGAGAGCACCUGCCUUGCAAGCAGGGGGUCAGGAGUUCGAUUCUCCUCGUCUCCACCA hit 91 : 246 321 (fwd) 92.80 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+G :GUAGCUCAG+UGG AGAGCACCUGCCUU +AAGCAGG+G 246 GGGGGCGUAGCUCAGCUGGGAGAGCACCUGCCUUGCAAGCAGGGG--------------- 290 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::G:GUUCGA UC:C::C: C+CCACCA 291 ---GuCAGGAGUUCGAUUCUCCUCGUCUCCACCA 321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3491,sp|AB022865.1|AB022865 Prevotella ruminicola genes for polygalacturonase, xylosidase, protein-export membrane protein, complete cds. ----isReversed: 0 ----hitSequence: GCCCUGAUAGUUAAAUGGAUAUAACAAGGUCCUCCUAAGACUUAGUUCCGCGUUCGAUUCGCGGUCGGGGUACGA hit 92 : 3064 3138 (fwd) 46.99 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 ::::::UAG:U A U GG +A A:CA: ::CCU UAAG:: :A 3064 GCCCUGAUAGUUAAAU-GGAuAUAACAAGGUCCUCCUAAGACUUA--------------- 3107 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :CG GUUCGA UC CG::::::: AC A 3108 ----GuUCCGCGUUCGAUUCGCGGUCGGGGUACGA 3138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3645,sp|AB023785.1|AB023785 Streptomyces griseus gene for ORF3, ORF2, transcription factor AdpA, ORF1, ORF4, ORF5, partial and complete cds. ----isReversed: 0 ----hitSequence: GUGGGUAUAGCUCAGCUGGCAGAGCACCUGGUUGUGGUCCAGGAUGUCGCGGGUUCAAGUCCCGUUACUCACC hit 93 : 5443 5515 (fwd) 72.91 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G:G :U:UAGCUCAG+UGG AGAGCACCUG:+U+ :CAGGA 5443 GUGGGUAUAGCUCAGCUGGCAGAGCACCUGGUUGUGGUCCAGGAU--------------- 5487 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:CGGGUUC+A+UCCCG::A: C:C 5488 ---GuCGCGGGUUCAAGUCCCGUUACUCACC--- 5515 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3732,sp|AB024693.1|AB024693 Leptospira interrogans serovar icterohaemorrhagiae OrfA, OrfB, OrfC, OrfD, OrfE, OrfF, OrfG, OrfH, tRNA-Ile, tRNA-Ala genes, complete cds and sequence. ----isReversed: 0 ----hitSequence: GGGGCUUUAGCUCAGCUGGGAGAGCAUCUGAUUUGCAUUCAGAAGGUCGUCGGUUCGAUCCCGACAAGCUCCA hit 94 : 2698 2770 (fwd) 82.64 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+GCU:UAGCUCAG+UGG AGAGCA:CUG:+UU +A :CAG:AG 2698 GGGGCUUUAGCUCAGCUGGGAGAGCAUCUGAUUUGCAUUCAGAAG--------------- 2742 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUCGA CC::C:AGC+CCA 2743 ---GuCGUCGGUUCGAUCCCGACAAGCUCCA--- 2770 ----endhit ----hitSequence: GGGCCUGUAGCUCAGCUGGUUAGAGCACACGCUUGAUAAGCGUGGGGUCAUGUGUUCAAAUCACAUCAGGCCCA hit 95 : 2610 2683 (fwd) 84.90 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CUGUAGCUCAG+UGGU+AGAGCAC::GC+U+AUAAGC::G+G 2610 GGGCCUGUAGCUCAGCUGGUuAGAGCACACGCUUGAUAAGCGUGGG-------------- 2655 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::G:GUUC+AAUC:C::CAG:CCCA 2656 ----GuCAUGUGUUCAAAUCACAUCAGGCCCA--- 2683 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3836,sp|AB026155.1|AB026155 Phytoplasma sp. Gph genes for 16S rRNA, tRNA-Ile, complete sequence. ----isReversed: 0 ----hitSequence: GGGCCUAUAGCUCAGCUGGUUAGAGCACACGCCUGAUAAGCGUGAGGUCGGUGGUUCAAGUCCAUUUAGGCCCACCA hit 96 : 1600 1676 (fwd) 100.06 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CU:UAGCUCAG+UGGU+AGAGCAC::GCCU+AUAAGC::GAG 1600 GGGCCUAUAGCUCAGCUGGUuAGAGCACACGCCUGAUAAGCGUGAG-------------- 1645 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:+:GGUUC+A+UCC:+::AG:CCCACCA 1646 ----GuCGGUGGUUCAAGUCCAUUUAGGCCCACCA 1676 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #3866,sp|AB026287.1|AB026287 Xanthomonas oryzae 16S-23S rDNA spacer region. ----isReversed: 0 ----hitSequence: GGGUCUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUAGUUCGAGUCUACCCAGACCCACCA hit 97 : 240 316 (fwd) 93.52 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CUGUAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 240 GGGUCUGUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 285 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG:::GUUCGA+UC:::CCAG:CCCACCA 286 ----GuCGGUAGUUCGAGUCUACCCAGACCCACCA 316 ----endhit ----hitSequence: GGGGCCUUAGCUCAGCUGGGAGAGCACCUGCUUUGCAAGCAGGGGGUCGUCGGUUCGAUCCCGACAGGCUCCACCA hit 98 : 145 220 (fwd) 94.90 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+GC::UAGCUCAG+UGG AGAGCACCUGC+UU +AAGCAGG+G 145 GGGGCCUUAGCUCAGCUGGGAGAGCACCUGCUUUGCAAGCAGGGG--------------- 189 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUCGA CC::C::GC+CCACCA 190 ---GuCGUCGGUUCGAUCCCGACAGGCUCCACCA 220 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4428,sp|AB030748.1|AB030748 Flavobacterium columnare gene, 16S-23S intergenic spacer region, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGAUUAGCUCAGCUGGCUAGAGCGCCUGCCUUGCACGCAGGAGGUCAUCGGUUCGACUCCGAUAUUCUCCACGA hit 99 : 309 385 (fwd) 83.22 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GG+G ::UAGCUCAG+UGG +AGAGC+CCUGCCUU +A GCAGGAG 309 GGGGGAUUAGCUCAGCUGGCuAGAGCGCCUGCCUUGCACGCAGGAG-------------- 354 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA UCC::::: C+CCAC A 355 ----GuCAUCGGUUCGACUCCGAUAUUCUCCACGA 385 ----endhit ----hitSequence: AGUCUCGUAGCUCAGCUGGUUAGAGUACUACACUGAUAAUGUAGGGGUCGGCAGUUCGAGUCUGCCCGGGACUA hit 100 : 122 195 (fwd) 76.76 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 :G::::GUA CUCAG+UGGU+AGAG AC::::CU+AUAA::::G+G 122 AGUCUCGUAGCUCAGCUGGUuAGAGUACUACACUGAUAAUGUAGGG-------------- 167 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG:::GUUCGA+UC:::CC::::C:A 168 ----GuCGGCAGUUCGAGUCUGCCCGGGACUA--- 195 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4477,sp|AB031211.1|AB031211 Bacillus halodurans lysS, rrnC-16S, trn-Ile, trn-Ala, rrnC-23S, rrnC-5S, trnJ-Val, trnJ-Thr, trnJ-Lys, trnJ-Leu1, trnJ-Gly, trnJ-Leu2, trnJ-Arg, trnJ-Pro, trnJ-Ala, rrnD-16S, rrnD-23S, yacH, ykfC, orf1, ctsR, yacI genes, partial and complete cds. ----isReversed: 0 ----hitSequence: GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCACCA hit 101 : 3396 3471 (fwd) 92.92 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+GC::UAGCUCAG+UGG AGAGC+CCUGC+UU +A GCAGGAG 3396 GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAG--------------- 3440 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA CC:::::GC+CCACCA 3441 ---GuCAGCGGUUCGAUCCCGCUAGGCUCCACCA 3471 ----endhit ----hitSequence: GGGCCUGUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCCACCA hit 102 : 3308 3384 (fwd) 101.26 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CUGUAGCUCAG+UGGU+AGAGC+C::GCCU+AUAAGC::GAG 3308 GGGCCUGUAGCUCAGCUGGUuAGAGCGCACGCCUGAUAAGCGUGAG-------------- 3353 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUC+A+UCC:::CAG:CCCACCA 3354 ----GuCGGUGGUUCAAGUCCACUCAGGCCCACCA 3384 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4477,sp|AB031211.1|AB031211 Bacillus halodurans lysS, rrnC-16S, trn-Ile, trn-Ala, rrnC-23S, rrnC-5S, trnJ-Val, trnJ-Thr, trnJ-Lys, trnJ-Leu1, trnJ-Gly, trnJ-Leu2, trnJ-Arg, trnJ-Pro, trnJ-Ala, rrnD-16S, rrnD-23S, yacH, ykfC, orf1, ctsR, yacI genes, partial and complete cds. ----isReversed: 0 ----hitSequence: GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCACCA hit 103 : 8065 8140 (fwd) 92.92 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+GC::UAGCUCAG+UGG AGAGC+CCUGC+UU +A GCAGGAG 8065 GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAG--------------- 8109 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA CC:::::GC+CCACCA 8110 ---GuCAGCGGUUCGAUCCCGCUAGGCUCCACCA 8140 ----endhit ----hitSequence: CGGGAAGUAGCUCAGCUUGGUAGAGCACUUGGUUUGGGACCAAGGGGUCGCAGGUUCAAAUCCUGUCUUCCCGACCA hit 104 : 7985 8061 (fwd) 94.02 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUU.GGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 +GGG::GUAGCUCAG+U+GGUAGAGCAC:UG:+UU A:CA:G+G 7985 CGGGAAGUAGCUCAGCUuGGUAGAGCACUUGGUUUGGGACCAAGGG-------------- 8030 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUC+AAUCC:G:C::CCC+ACCA 8031 ----GuCGCAGGUUCAAAUCCUGUCUUCCCGACCA 8061 ----endhit ----hitSequence: GCGCCCGUAGCUCAAUUGGAUAGAGCGUUUGACUACGGAUCAAAAGGUUAGGGGUUCGACUCCUCUCGGGCGCGCCA hit 105 : 7903 7979 (fwd) 81.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G:C:GUAGCUCA UUGG +AGAGC+::UG:CU A:CA::AG 7903 GCGCCCGUAGCUCAAUUGGAuAGAGCGUUUGACUACGGAUCAAAAG-------------- 7948 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :: GGUUCGA UCC ::C:G:C:C CCA 7949 ----GuUAGGGGUUCGACUCCUCUCGGGCGCGCCA 7979 ----endhit ----hitSequence: GCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCCCUCGGCACCA hit 106 : 7799 7887 (fwd) 76.50 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G::G :GU+G:::A UUGG :::CAC::G:CUUA AA:C::G G:::G GU A C 7799 GCCGGGGUGGUGGAAUUGGCaGACACACAGGACUUAAAAUCCUGC-GGUAG--GUGA--C 7853 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 :::CG GC:GGUUC+A+UCC:GCC: C::CACCA 7854 UACCGUGCCGGUUCAAGUCCGGCCCUCGGCACCA 7887 ----endhit ----hitSequence: GCGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAAUCCCGUCUUCCGCUCCA hit 107 : 7701 7775 (fwd) 94.92 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G:GG::GUAG:UCAGU GGUAGA:CACC::C+U+ +AAG::GG+G 7701 GCGGAAGUAGUUCAGU-GGUAGAACACCACCUUGCCAAGGUGGGG--------------- 7744 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:CGGGUUCGAAUCCCG:C::CC:C CCA 7745 ---GuCGCGGGUUCGAAUCCCGUCUUCCGCUCCA 7775 ----endhit ----hitSequence: GCGGGUGUGGCGGAAUUGGCAGACGCGCUAGACUUAGGAUCUAGUGUCCUUGUGACGUGGGGGUUCGACUCCCUUCACCCGCACCA hit 108 : 7609 7694 (fwd) 71.46 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____.>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAA.ac 58 G:GG:UGU+GC::A UUGG ::GC+C::G:CUUA A:C::G GUC U 7609 GCGGGUGUGGCGGAAUUGGCaGACGCGCUAGACUUAGGAUCUAGU-GUC----CUUGu-- 7661 >>>>>,,<<<<<_______>>>>>))))))):::: 59 cggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 GACG :+GGGUUCGA UCCC+:CA:CC:CACCA 7662 --GACGUGGGGGUUCGACUCCCUUCACCCGCACCA 7694 ----endhit ----hitSequence: GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA hit 109 : 7525 7600 (fwd) 98.66 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G:G:C::UAGCUCAGUUGGUAGAGCA:CUG:CUU UAA:CAG:+G 7525 GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGG--------------- 7569 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUCGA+UCC::C::G:C:CACCA 7570 ---GuCGAAGGUUCGAGUCCUUCAUGGCUCACCA 7600 ----endhit ----hitSequence: GCCGGUCUAGCUCAAUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCA hit 110 : 7445 7517 (fwd) 82.35 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G::G: :UAGCUCA UUGGUAGAGCA:CUG:CUU UAA:CAG:AG 7445 GCCGGUCUAGCUCAAUUGGUAGAGCAACUGACUUGUAAUCAGUAG--------------- 7489 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :: GGUUC+A+UCC ::: :C::CA 7490 ---GuUGGGGGUUCAAGUCCUCUGGCCGGCA--- 7517 ----endhit ----hitSequence: GGAGGGUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGGGUCGGCGGUUCGAUCCCGUCACCCUCCACCA hit 111 : 7328 7403 (fwd) 97.14 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG:G:::UAGCUCAG+UGG AGAGCACCUGCCUUA+AAGCAGG+G 7328 GGAGGGUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGG--------------- 7372 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG+:GGUUCGA CC:+C:::C:CCACCA 7373 ---GuCGGCGGUUCGAUCCCGUCACCCUCCACCA 7403 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4478,sp|AB031212.1|AB031212 Bacillus halodurans orf1, orf2, kbaA, ybaN, rrnE-16S, rrnE-23S, rrnE-5S, trn-Asn, trn-Thr, rrnE-23S, rrnE-5S, trn-Asn, trn-Thr, tnpA genes, partial and complete cds. ----isReversed: 0 ----hitSequence: GCUUCCAUAGCUCAGUCGGUAGAGCACUACCAUGGUAAGGUAGGGGUCAGCGGUUCAAGUCCGCUUGGAAGCU hit 112 : 7914 7986 (fwd) 77.36 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G:::C::UAGCUCAGU GGUAGAGCAC:::C U+ UAAG:::G+G 7914 GCUUCCAUAGCUCAGUCGGUAGAGCACUACCAUGGUAAGGUAGGG--------------- 7958 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUC+A+UCC:::::G:::C 7959 ---GuCAGCGGUUCAAGUCCGCUUGGAAGCU--- 7986 ----endhit ----hitSequence: UCCACAGUAGCUCAGUGGUAGAGCAAUCGGCUGUUAACCGAUCGGUCGUAGGUUCGAGUCCUACCUGUGGAGCCA hit 113 : 7832 7906 (fwd) 89.38 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 ::::C:GUAGCUCAGU GGUAGAGCA:::G:CU+ UAA:C::: G 7832 UCCACAGUAGCUCAGU-GGUAGAGCAAUCGGCUGUUAACCGAUCG--------------- 7875 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUCGA+UCC::CC:G:::: CCA 7876 ---GuCGUAGGUUCGAGUCCUACCUGUGGAGCCA 7906 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4479,sp|AB031213.1|AB031213 Bacillus halodurans ydcI, ydcK, trn-Asn, trn-Ser, trn-Glu, trn-Val, trn-Asp, trn-leu1, trn-leu2, trn-Arg, trn-Gly, trn-lle, rrnF-16S, rrnF-23S, trnF-5S, ykfC genes, partial and complete cds. ----isReversed: 0 ----hitSequence: GGGCCUGUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCCACCA hit 114 : 2791 2867 (fwd) 101.26 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CUGUAGCUCAG+UGGU+AGAGC+C::GCCU+AUAAGC::GAG 2791 GGGCCUGUAGCUCAGCUGGUuAGAGCGCACGCCUGAUAAGCGUGAG-------------- 2836 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUC+A+UCC:::CAG:CCCACCA 2837 ----GuCGGUGGUUCAAGUCCACUCAGGCCCACCA 2867 ----endhit ----hitSequence: GCGGGUGUAGUUUAGUGGUAAAACCUCAGCCUUCCAAGCUGAUGUCGUGGGUUCGAUUCCCAUCACCCGCUCCA hit 115 : 2678 2751 (fwd) 81.34 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G:GG:UGUAG:U:AGU GGUA:A:C :C:GCCUU +AAGC:G: 2678 GCGGGUGUAGUUUAGU-GGUAAAACCUCAGCCUUCCAAGCUGAU---------------- 2720 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C::GGGUUCGA UCCC::CA:CC:C CCA 2721 ---GuCGUGGGUUCGAUUCCCAUCACCCGCUCCA 2751 ----endhit ----hitSequence: CGGGAAGUAGCUCAGCUUGGUAGAGCACUUGGUUUGGGACCAAGGGGUCGCAGGUUCAAAUCCUGUCUUCCCGACCA hit 116 : 2595 2671 (fwd) 94.02 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUU.GGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 +GGG::GUAGCUCAG+U+GGUAGAGCAC:UG:+UU A:CA:G+G 2595 CGGGAAGUAGCUCAGCUuGGUAGAGCACUUGGUUUGGGACCAAGGG-------------- 2640 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:C:GGUUC+AAUCC:G:C::CCC+ACCA 2641 ----GuCGCAGGUUCAAAUCCUGUCUUCCCGACCA 2671 ----endhit ----hitSequence: GCGCCCGUAGCUCAAUUGGAUAGAGCGUUUGACUACGGAUCAAAAGGUUAGGGGUUCGACUCCUCUCGGGCGCGCCA hit 117 : 2498 2574 (fwd) 81.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G:C:GUAGCUCA UUGG +AGAGC+::UG:CU A:CA::AG 2498 GCGCCCGUAGCUCAAUUGGAuAGAGCGUUUGACUACGGAUCAAAAG-------------- 2543 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :: GGUUCGA UCC ::C:G:C:C CCA 2544 ----GuUAGGGGUUCGACUCCUCUCGGGCGCGCCA 2574 ----endhit ----hitSequence: GCGGUUGUGGCGGAAUGGCAGACGCGCUAGGUUGAGGGCCUAGUGGGGGUUGACCCCGUGGAGGUUCGAGUCCUCUCAACCGCA hit 118 : 2405 2488 (fwd) 61.39 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:GG:UGU+GC::A U GG ::GC+C::G:+U+A :C::G GG:+: : : 2405 GCGGUUGUGGCGGAAU-GGCaGACGCGCUAGGUUGAGGGCCUAGUGGGGGUU------GA 2457 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 :+:CG :::GGUUCGA+UCC:::CA:CC:CA 2458 CCCCGUGGAGGUUCGAGUCCUCUCAACCGCA--- 2488 ----endhit ----hitSequence: GCGGGUGUGGCGGAAUUGGCAGACGCGCUAGACUUAGGAUCUAGUGUCCUUGUGACGUGGGGGUUCGACUCCCUUCACCCGCA hit 119 : 2307 2389 (fwd) 63.16 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____.>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAA.ac 58 G:GG:UGU+GC::A UUGG ::GC+C::G:CUUA A:C::G GUC U 2307 GCGGGUGUGGCGGAAUUGGCaGACGCGCUAGACUUAGGAUCUAGU-GUC----CUUGu-- 2359 >>>>>,,<<<<<_______>>>>>))))))):::: 59 cggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 GACG :+GGGUUCGA UCCC+:CA:CC:CA 2360 --GACGUGGGGGUUCGACUCCCUUCACCCGCA--- 2389 ----endhit ----hitSequence: GGUCCGGUAGUUCAGUUGGUUAGAAUGCCUGCCUGUCACGCAGGAGGUCGCGGGUUCGAGUCCCGUCCGGACCGCCA hit 120 : 2203 2279 (fwd) 95.79 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GG::C:GUA :UCAGUUGGU+AGA: +CCUGCCU+ +A GCAGGAG 2203 GGUCCGGUAGUUCAGUUGGUuAGAAUGCCUGCCUGUCACGCAGGAG-------------- 2248 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:CGGGUUCGA+UCCCG:C:G::CC CCA 2249 ----GuCGCGGGUUCGAGUCCCGUCCGGACCGCCA 2279 ----endhit ----hitSequence: GGAGGAUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGGGUCGGCGGUUCGAUCCCGUCAUCCUCCACCA hit 121 : 2120 2195 (fwd) 97.02 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG:G:::UAGCUCAG+UGG AGAGCACCUGCCUUA+AAGCAGG+G 2120 GGAGGAUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGG--------------- 2164 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG+:GGUUCGA CC:+C:::C:CCACCA 2165 ---GuCGGCGGUUCGAUCCCGUCAUCCUCCACCA 2195 ----endhit ----hitSequence: GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAUCA hit 122 : 2012 2086 (fwd) 71.61 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G ::C::U+G:::AGU GGU+A:::CACC::CCUU +A G::GG 2012 GGCCCGUUGGUCAAGU-GGUuAAGACACCGCCCUUUCACGGCGGUA-------------- 2056 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 C:CGGGUUCGAAUCCCG:::G:: CA CA 2057 ----ACACGGGUUCGAAUCCCGUACGGGUCAUCA 2086 ----endhit ----hitSequence: GGAGAAGUACCCAAGUGGCUGAAGGGGCUCCCCUGCUAAGGGAGUAGGUCGUGUGAGCGGCGCGAGGGUUCAAAUCCCUCCUUCUCCGCCA hit 123 : 1911 2001 (fwd) 74.11 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GGggcugUAGCUCAGUUGGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAac 58 GG:G::GUA C::AGU GG + A::G +C:::CCU+ UAAG:::G +::CG: GU A : 1911 GGAGAAGUACCCAAGU-GGCugAAGGGGCUCCCCUGCUAAGGGAGUAGGUCGU-GUGA-G 1967 >>>>>,,<<<<<_______>>>>>))))))):::: 59 cggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 CG::+ CG:GGGUUC+AAUCCC:CC::C:CC CCA 1968 CGGCG-CGAGGGUUCAAAUCCCUCCUUCUCCGCCA 2001 ----endhit ----hitSequence: UCCGCAGUAGCUCAGUGGUAGAGCAAUCGGCUGUUAACCGAUCGGUCGUAGGUUCGAGUCCUACCUGCGGAGCCA hit 124 : 1834 1908 (fwd) 92.26 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 :::GC:GUAGCUCAGU GGUAGAGCA:::G:CU+ UAA:C::: G 1834 UCCGCAGUAGCUCAGU-GGUAGAGCAAUCGGCUGUUAACCGAUCG--------------- 1877 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUCGA+UCC::CC:GC::: CCA 1878 ---GuCGUAGGUUCGAGUCCUACCUGCGGAGCCA 1908 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4480,sp|AB031214.1|AB031214 Bacillus halodurans yvgQ, rrnG-16S, trn-lle, trn-Ala, rrnG-23S, trn-5S, ykfC, nasA genes, partial and complete cds. ----isReversed: 0 ----hitSequence: GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCACCA hit 125 : 4292 4367 (fwd) 92.92 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+GC::UAGCUCAG+UGG AGAGC+CCUGC+UU +A GCAGGAG 4292 GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAG--------------- 4336 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA CC:::::GC+CCACCA 4337 ---GuCAGCGGUUCGAUCCCGCUAGGCUCCACCA 4367 ----endhit ----hitSequence: GGGCCUGUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGGUGGUUCGAGUCCACUCAGGCCCACCA hit 126 : 4204 4280 (fwd) 102.39 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GGG:CUGUAGCUCAG+UGGU+AGAGC+C::GCCU+AUAAGC::GAG 4204 GGGCCUGUAGCUCAGCUGGUuAGAGCGCACGCCUGAUAAGCGUGAG-------------- 4249 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA+UCC:::CAG:CCCACCA 4250 ----GuCGGUGGUUCGAGUCCACUCAGGCCCACCA 4280 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4481,sp|AB031215.1|AB031215 Bacillus halodurans ygaG, orf, ygxA, rrnH-16S, rrnH-23S, rrnH-5S, trnD-Asn, trnD-Ser, trnD-Glu, trnD-Val, trnD-Met, trnD-Asp, trnD-Phe, trnD-Thr, trnD-Tyr, trnD-His, trnD-Gln, trnD-Gly, TnpA genes, complete and partial cds. ----isReversed: 0 ----hitSequence: GCGCCCGUAGCUCAAUUGGAUAGAGCGUUUGACUACGGAUCAAAAGGUUAGGGGUUCGACUCCUCUCGGGCGCGCCA hit 127 : 9668 9744 (fwd) 81.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G:C:GUAGCUCA UUGG +AGAGC+::UG:CU A:CA::AG 9668 GCGCCCGUAGCUCAAUUGGAuAGAGCGUUUGACUACGGAUCAAAAG-------------- 9713 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :: GGUUCGA UCC ::C:G:C:C CCA 9714 ----GuUAGGGGUUCGACUCCUCUCGGGCGCGCCA 9744 ----endhit ----hitSequence: GCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCGAGUCCGGCCCUCGGCACCA hit 128 : 9564 9652 (fwd) 77.62 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G::G :GU+G:::A UUGG :::CAC::G:CUUA AA:C::G G:::G GU A C 9564 GCCGGGGUGGUGGAAUUGGCaGACACACAGGACUUAAAAUCCUGC-GGUAG--GUGA--C 9618 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 :::CG GC:GGUUCGA+UCC:GCC: C::CACCA 9619 UACCGUGCCGGUUCGAGUCCGGCCCUCGGCACCA 9652 ----endhit ----hitSequence: GGCGGCAUAGCCAAGUGGUAAGGCACGGGUCUGCAAAACCCUUAUCCCCGGUUCGAAUCCGGGUGCCGCCU hit 129 : 9467 9537 (fwd) 67.11 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG:G:::UAGC::AGU GGUA::GCA ::G:CU+ AA:C:: 9467 GGCGGCAUAGCCAAGU-GGUAAGGCACGGGUCUGCAAAACCCUU---------------- 9509 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 +C:C:GGUUCGAAUCC:G::::C:CC 9510 ---AuCCCCGGUUCGAAUCCGGGUGCCGCCU--- 9537 ----endhit ----hitSequence: GCGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAAUCCCGUCUUCCGCUCCA hit 130 : 9385 9459 (fwd) 94.92 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G:GG::GUAG:UCAGU GGUAGA:CACC::C+U+ +AAG::GG+G 9385 GCGGAAGUAGUUCAGU-GGUAGAACACCACCUUGCCAAGGUGGGG--------------- 9428 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:CGGGUUCGAAUCCCG:C::CC:C CCA 9429 ---GuCGCGGGUUCGAAUCCCGUCUUCCGCUCCA 9459 ----endhit ----hitSequence: UGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUGAUGCGCUGGUUCGAAUCCAGCUAGCCCAGCCA hit 131 : 9306 9380 (fwd) 78.94 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 :GGGCU:UAGC::AG+ GGUA::GCA:C:G:CUU A :C:G:+ 9306 UGGGCUAUAGCCAAGC-GGUAAGGCAACGGACUUUGACUCCGUGA--------------- 9349 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 CGC:GGUUCGAAUCC:GC:AGCCC: CCA 9350 ---UgCGCUGGUUCGAAUCCAGCUAGCCCAGCCA 9380 ----endhit ----hitSequence: GCGACUGUGGCGAAGUGGUUAACGCACCGGAUUGUGGCUCCGGCACUCGUGGGUUCGAUUCCCAUCAGUCGCCCCA hit 132 : 9217 9292 (fwd) 78.02 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G:CUGU+GC::AGU GGU+A::GCACC:G:+U+ :C:GG 9217 GCGACUGUGGCGAAGU-GGUuAACGCACCGGAUUGUGGCUCCGGCA-------------- 9261 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 +C::GGGUUCGA UCCC::CAG:C:C CCA 9262 ----CuCGUGGGUUCGAUUCCCAUCAGUCGCCCCA 9292 ----endhit ----hitSequence: AGGGGCAUAGUUUAACGGUAGAACAGAGGUCUCCAAAACCUCCGGUGUGGGUUCGAUUCCUACUGCCCCUGCCA hit 133 : 9125 9198 (fwd) 70.99 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 :GGG:::UAG:U:A + GGUA:A:CA:::G:CU AA:C::: G 9125 AGGGGCAUAGUUUAAC-GGUAGAACAGAGGUCUCCAAAACCUCCG--------------- 9168 >>>,,<<<<<_______>>>>>))))))):::: 61 gacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 G G: GGUUCGA UCC :C:::CCC: CCA 9169 ---GUGUGGGUUCGAUUCCUACUGCCCCUGCCA 9198 ----endhit ----hitSequence: GGAGGGGUAGCGAAGUGGCUAAACGCGGCGGACUGUAAAUCCGCUCCCUCAGGGUUCGGCGGUUCGAAUCCGUCCCCCUCCACCA hit 134 : 9029 9113 (fwd) 80.72 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GGggcugUAGCUCAGUUGGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAac 58 GG:G::GUAGC::AGU GG + A::GC+:C:G:CU+ AA:C:G: ::C + A 9029 GGAGGGGUAGCGAAGU-GGCuaAACGCGGCGGACUGUAAAUCCGCU-CCC----UCA--- 9079 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 cggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G:: +CG+:GGUUCGAAUCC:+CC::C:CCACCA 9080 --GGGUuCGGCGGUUCGAAUCCGUCCCCCUCCACCA 9113 ----endhit ----hitSequence: GCCGGUCUAGCUCAAUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCACCA hit 135 : 8899 8974 (fwd) 90.65 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 G::G: :UAGCUCA UUGGUAGAGCA:CUG:CUU UAA:CAG:AG 8899 GCCGGUCUAGCUCAAUUGGUAGAGCAACUGACUUGUAAUCAGUAG--------------- 8943 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+ :: GGUUC+A+UCC ::: :C::CACCA 8944 ---GuUGGGGGUUCAAGUCCUCUGGCCGGCACCA 8974 ----endhit ----hitSequence: GGCUCGGUAGCUCAGUCGGUAGAGCAAUGGACUGAAAAUCCAUGUGUCGGCGGUUCGAUUCCGUCCCGAGCCACCA hit 136 : 8818 8893 (fwd) 94.47 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG::C:GUAGCUCAGU GGUAGAGCA:::G:CU+A AA:C:::+ 8818 GGCUCGGUAGCUCAGUCGGUAGAGCAAUGGACUGAAAAUCCAUGU--------------- 8862 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG+:GGUUCGA UCC:+CC:G::CCACCA 8863 ---GuCGGCGGUUCGAUUCCGUCCCGAGCCACCA 8893 ----endhit ----hitSequence: GGUCCGGUAGUUCAGUUGGUUAGAAUGCCUGCCUGUCACGCAGGAGGUCGCGGGUUCGAGUCCCGUCCGGACCGCCA hit 137 : 8731 8807 (fwd) 95.79 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GG::C:GUA :UCAGUUGGU+AGA: +CCUGCCU+ +A GCAGGAG 8731 GGUCCGGUAGUUCAGUUGGUuAGAAUGCCUGCCUGUCACGCAGGAG-------------- 8776 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:CGGGUUCGA+UCCCG:C:G::CC CCA 8777 ----GuCGCGGGUUCGAGUCCCGUCCGGACCGCCA 8807 ----endhit ----hitSequence: CGCGGGGUGGAGCAGUCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGGCGGUUCAAAUCCGUCCCCCGCAACCA hit 138 : 8650 8726 (fwd) 87.70 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUU.GGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G:G::GU+G::CAGU +GGUAG::C+:C:G:CU AUAA:C:G:AG 8650 CGCGGGGUGGAGCAGUCuGGUAGCUCGUCGGGCUCAUAACCCGAAG-------------- 8695 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG+:GGUUC+AAUCC:+CC::C:C ACCA 8696 ----GuCGGCGGUUCAAAUCCGUCCCCCGCAACCA 8726 ----endhit ----hitSequence: GGAGGAUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGGGUCGGCAGUUCGAUCCUGUCAUCCUCCACCA hit 139 : 8399 8474 (fwd) 94.21 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG:G:::UAGCUCAG+UGG AGAGCACCUGCCUUA+AAGCAGG+G 8399 GGAGGAUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGG--------------- 8443 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG+::GUUCGA C::+C:::C:CCACCA 8444 ---GuCGGCAGUUCGAUCCUGUCAUCCUCCACCA 8474 ----endhit ----hitSequence: GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCA hit 140 : 8293 8364 (fwd) 70.99 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 G ::C::U+G:::AGU GGU+A:::CACC::CCUU +A G::GG 8293 GGCCCGUUGGUCAAGU-GGUuAAGACACCGCCCUUUCACGGCGGUA-------------- 8337 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 C:CGGGUUCGAAUCCCG:::G:: CA 8338 ----ACACGGGUUCGAAUCCCGUACGGGUCA--- 8364 ----endhit ----hitSequence: GGAGAGCUGUCCGAGUUGGCCGAAGGAGCACGAUUGGAAAUCGUGUAGGCGGUGACAAACCGUCUCGAGGGUUCGAAUCCCUCGCUCUCCGCCA hit 141 : 8186 8279 (fwd) 70.62 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____.> 1 GGggcugUAGCUCAGUUGGU..AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAA.a 57 GG:G:::U+:C::AGUUGG A::G:+C::G:+U+ AA:C::G :: CGGUG A+A 8186 GGAGAGCUGUCCGAGUUGGCcgAAGGAGCACGAUUGGAAAUCGUGU-AGGCGGUGACAaA 8244 >>>>>>,,<<<<<_______>>>>>))))))):::: 58 ccggacGCgcgGGUUCGAaUCCcgccagccCCACCA 93 CCG :: CG:GGGUUCGAAUCCC:C:::C:CC CCA 8245 CCGUCU-CGAGGGUUCGAAUCCCUCGCUCUCCGCCA 8279 ----endhit ----hitSequence: UCCACAGUAGCUCAGUGGUAGAGCAAUCGGCUGUUAACCGAUCGGUCGUAGGUUCGAGUCCUACCUGUGGAGCCA hit 142 : 8110 8184 (fwd) 89.38 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 ::::C:GUAGCUCAGU GGUAGAGCA:::G:CU+ UAA:C::: G 8110 UCCACAGUAGCUCAGU-GGUAGAGCAAUCGGCUGUUAACCGAUCG--------------- 8153 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG::GGUUCGA+UCC::CC:G:::: CCA 8154 ---GuCGUAGGUUCGAGUCCUACCUGUGGAGCCA 8184 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4482,sp|AB031216.1|AB031216 Flavobacterium columnare gene, 16S-23S intergenic spacer region, strain:FK 401. ----isReversed: 0 ----hitSequence: GGGGGAUUAGCUCAGCUGGCUAGAGCGCCUGCCUUGCACGCAGGAGGUCAUCGGUUCGACUCCGAUAUUCUCCACCA hit 143 : 309 385 (fwd) 90.90 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GG+G ::UAGCUCAG+UGG +AGAGC+CCUGCCUU +A GCAGGAG 309 GGGGGAUUAGCUCAGCUGGCuAGAGCGCCUGCCUUGCACGCAGGAG-------------- 354 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA UCC::::: C+CCACCA 355 ----GuCAUCGGUUCGACUCCGAUAUUCUCCACCA 385 ----endhit ----hitSequence: AGUCUCGUAGCUCAGCUGGUUAGAGUACUACACUGAUAAUGUAGGGGUCGGCAGUUCGAGUCUGCCCGGGACUA hit 144 : 122 195 (fwd) 76.76 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 :G::::GUA CUCAG+UGGU+AGAG AC::::CU+AUAA::::G+G 122 AGUCUCGUAGCUCAGCUGGUuAGAGUACUACACUGAUAAUGUAGGG-------------- 167 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG:::GUUCGA+UC:::CC::::C:A 168 ----GuCGGCAGUUCGAGUCUGCCCGGGACUA--- 195 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4483,sp|AB031217.1|AB031217 Flavobacterium columnare gene, 16S-23S intergenic spacer region, strain:EK 28. ----isReversed: 0 ----hitSequence: GGGGGAUUAGCUCAGCUGGCUAGAGCGCCUGCCUUGCACGCAGGAGGUCAUCGGUUCGACUCCGAUAUUCUCCACCA hit 145 : 320 396 (fwd) 90.90 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GG+G ::UAGCUCAG+UGG +AGAGC+CCUGCCUU +A GCAGGAG 320 GGGGGAUUAGCUCAGCUGGCuAGAGCGCCUGCCUUGCACGCAGGAG-------------- 365 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA UCC::::: C+CCACCA 366 ----GuCAUCGGUUCGACUCCGAUAUUCUCCACCA 396 ----endhit ----hitSequence: AGUCUCGUAGCUCAGCUGGUUAGAGUACUACACUGAUAAUGUAGGGGUCGGCAGUUCGAGUCUGCCCGGGACUACAA hit 146 : 94 170 (fwd) 77.38 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 :G::::GUA CUCAG+UGGU+AGAG AC::::CU+AUAA::::G+G 94 AGUCUCGUAGCUCAGCUGGUuAGAGUACUACACUGAUAAUGUAGGG-------------- 139 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG:::GUUCGA+UC:::CC::::C:AC A 140 ----GuCGGCAGUUCGAGUCUGCCCGGGACUACAA 170 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4484,sp|AB031218.1|AB031218 Flavobacterium columnare gene, 16S-23S intergenic spacer region, strain:PH 97028. ----isReversed: 0 ----hitSequence: GGGGGAUUAGCUCAGCUGGCUAGAGCGCCUGCCUUGCACGCAGGAGGUCAUCGGUUCGACUCCGAUAUUCUCCACAA hit 147 : 305 381 (fwd) 83.22 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GG+G ::UAGCUCAG+UGG +AGAGC+CCUGCCUU +A GCAGGAG 305 GGGGGAUUAGCUCAGCUGGCuAGAGCGCCUGCCUUGCACGCAGGAG-------------- 350 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA UCC::::: C+CCAC A 351 ----GuCAUCGGUUCGACUCCGAUAUUCUCCACAA 381 ----endhit ----hitSequence: AGUCUCGUAGCUCAGCUGGUUAGAGUACUACACUGAUAAUGUAGGGGUCGGCAGUUCGAGUCUGCCCGGGACUACUA hit 148 : 118 194 (fwd) 77.38 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 :G::::GUA CUCAG+UGGU+AGAG AC::::CU+AUAA::::G+G 118 AGUCUCGUAGCUCAGCUGGUuAGAGUACUACACUGAUAAUGUAGGG-------------- 163 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG:::GUUCGA+UC:::CC::::C:AC A 164 ----GuCGGCAGUUCGAGUCUGCCCGGGACUACUA 194 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4485,sp|AB031219.1|AB031219 Flavobacterium columnare gene, 16S-23S intergenic spacer region, strain:ATCC 49513. ----isReversed: 0 ----hitSequence: GGGGGAUUAGCUCAGCUGGCUAGAGCGCCUGCCUUGCACGCAGGAGGUCAUCGGUUCGACUCCGAUAUUCUCCACGA hit 149 : 311 387 (fwd) 83.22 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GG+G ::UAGCUCAG+UGG +AGAGC+CCUGCCUU +A GCAGGAG 311 GGGGGAUUAGCUCAGCUGGCuAGAGCGCCUGCCUUGCACGCAGGAG-------------- 356 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA UCC::::: C+CCAC A 357 ----GuCAUCGGUUCGACUCCGAUAUUCUCCACGA 387 ----endhit ----hitSequence: AGUCUCGUAGCUCAGCUGGUUAGAGUACUACACUGAUAAUGUAGGGGUCGGCAGUUCGAGUCUGCCCGGGACUA hit 150 : 123 196 (fwd) 76.76 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 :G::::GUA CUCAG+UGGU+AGAG AC::::CU+AUAA::::G+G 123 AGUCUCGUAGCUCAGCUGGUuAGAGUACUACACUGAUAAUGUAGGG-------------- 168 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG:::GUUCGA+UC:::CC::::C:A 169 ----GuCGGCAGUUCGAGUCUGCCCGGGACUA--- 196 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4486,sp|AB031220.1|AB031220 Flavobacterium columnare gene, 16S-23S intergenic spacer region, strain:JIP 08-94. ----isReversed: 0 ----hitSequence: GGGGGAUUAGCUCAGCUGGCUAGAGCGCCUGCCUUGCACGCAGGAGGUCAUCGGUUCGACUCCGAUAUUCUCCACCA hit 151 : 311 387 (fwd) 90.90 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GG+G ::UAGCUCAG+UGG +AGAGC+CCUGCCUU +A GCAGGAG 311 GGGGGAUUAGCUCAGCUGGCuAGAGCGCCUGCCUUGCACGCAGGAG-------------- 356 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA UCC::::: C+CCACCA 357 ----GuCAUCGGUUCGACUCCGAUAUUCUCCACCA 387 ----endhit ----hitSequence: AGUCUCGUAGCUCAGCUGGUUAGAGUACUACACUGAUAAUGUAGGGGUCGGCAGUUCGAGUCUGCCCGGGACUA hit 152 : 123 196 (fwd) 76.76 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 :G::::GUA CUCAG+UGGU+AGAG AC::::CU+AUAA::::G+G 123 AGUCUCGUAGCUCAGCUGGUuAGAGUACUACACUGAUAAUGUAGGG-------------- 168 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG:::GUUCGA+UC:::CC::::C:A 169 ----GuCGGCAGUUCGAGUCUGCCCGGGACUA--- 196 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4487,sp|AB031221.1|AB031221 Flavobacterium columnare gene, 16S-23S intergenic spacer region, strain:LP 8. ----isReversed: 0 ----hitSequence: GGGGGAUUAGCUCAGCUGGCUAGAGCGCCUGCCUUGCACGCAGGAGGUCAUCGGUUCGACUCCGAUAUUCUCCACCA hit 153 : 320 396 (fwd) 90.90 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 GG+G ::UAGCUCAG+UGG +AGAGC+CCUGCCUU +A GCAGGAG 320 GGGGGAUUAGCUCAGCUGGCuAGAGCGCCUGCCUUGCACGCAGGAG-------------- 365 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUCGA UCC::::: C+CCACCA 366 ----GuCAUCGGUUCGACUCCGAUAUUCUCCACCA 396 ----endhit ----hitSequence: AGUCUCGUAGCUCAGCUGGUUAGAGUACUACACUGAUAAUGUAGGGGUCGGCAGUUCGAGUCUGCCCGGGACUACAA hit 154 : 94 170 (fwd) 77.38 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 :G::::GUA CUCAG+UGGU+AGAG AC::::CU+AUAA::::G+G 94 AGUCUCGUAGCUCAGCUGGUuAGAGUACUACACUGAUAAUGUAGGG-------------- 139 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+CG:::GUUCGA+UC:::CC::::C:AC A 140 ----GuCGGCAGUUCGAGUCUGCCCGGGACUACAA 170 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #4654,sp|AB032429.1|AB032429 Helicobacter pylori lspA, UreA, UreB, UreI, UreE, UreF, UreG, UreH genes, complete cds, strain;HPK5. ----isReversed: 0 ----hitSequence: GGUCGCGUAGCUCAGUUGGUAGAGCACUACCUUGACAUGGUAGUGGCCGCUGGUUCAAGUCCAGUCGUGGCCACCA hit 155 : 755 830 (fwd) 82.32 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG : :GUAGCUCAGUUGGUAGAGCAC:::C+U+A+A G:::G G 755 GGUCGCGUAGCUCAGUUGGUAGAGCACUACCUUGACAUGGUAGUG--------------- 799 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G C:C:GGUUC+A+UCC:G:C: : CCACCA 800 ---GcCGCUGGUUCAAGUCCAGUCGUGGCCACCA 830 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/eubact.fasta.gz ----sequence: #5232,sp|AB035920.1|AB035920 Escherichia coli O157:H7 hemG, rrsA, ileT, alaT, rrlA, rrfA, mobB, mobA genes for protoporphyrin oxidase protein, 16S rRNA, isoleucine tRNA 1, alanine tRNA 1B, 23S rRNA, 5S rRNA, molybdopterin-guanine dinucleotide biosynthesis protein B, molybdopterin-guanine dinucleotide biosynthesis protein A, complete and partial cds. ----isReversed: 0 ----hitSequence: GGGGCUAUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCUGCGGUUCGAUCCCGCAUAGCUCCACCA hit 156 : 2693 2768 (fwd) 88.75 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GGggcugUAGCUCAGUUGGUAGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAaccg 60 GG+GCU:UAGCUCAG+UGG AGAGC+CCUGC+UU +A GCAGGAG 2693 GGGGCUAUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAG--------------- 2737 >>>,.,<<<<<_______>>>>>))))))):::: 61 gacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C ::GGUUCGA CC:: :AGC+CCACCA 2738 ---GuCUGCGGUUCGAUCCCGCAUAGCUCCACCA 2768 ----endhit ----hitSequence: AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCUACCA hit 157 : 2574 2650 (fwd) 88.36 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GGggcugUAGCUCAGUUGGU.AGAGCAcCuGcCUuauAAgCaGgaGguccggugUAAacc 59 :GG::UGUAGCUCAG UGGU+AGAGC+C:::CCU+AUAAG:::GAG 2574 AGGCUUGUAGCUCAGGUGGUuAGAGCGCACCCCUGAUAAGGGUGAG-------------- 2619 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggacG.CgcgGGUUCGAaUCCcgccagccCCACCA 93 G+C:::GGUUC+A+UCC:::CA::CC:ACCA 2620 ----GuCGGUGGUUCAAGUCCACUCAGGCCUACCA 2650 ----endhit