params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,12,Y08729.1,1,sp|Y08729.1|AADOXP84B A.ambivalens doxB gene locus with doxB; doxC; doxE; and doxF genes,0,0,697,776,51.44,GCCGGGGUCGCCUAGCUCGGUUAGGGCGGCUGCUAAGCCGUUGGGGGAAACCCGCGCGGGUUCAAAUCCCGCUCCCGGCG,Y08729.1/697-776,697-776,0,79,Y08729.1/697-776
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,30,AB003404.1,1,sp|AB003404.1|AB003404 Halorubrum sodomense DNA; ribosomal spacer region containing tRNA-Ala.,0,1,165,236,79.44,GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA,AB003404.1/165-236 AB003405.1/162-233 AB003407.1/161-232 AB003408.1/162-233 AB003411.1/168-239 AF291171.1/222-293 AF291173.1/222-293 AF291177.1/165-236,165-236,0,71,AB003404.1/165-236
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,31,AB003405.1,1,sp|AB003405.1|AB003405 Halorubrum saccharovorum DNA; ribosomal spacer region containing tRNA-Ala.,0,2,162,233,79.44,GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA,AB003404.1/165-236 AB003405.1/162-233 AB003407.1/161-232 AB003408.1/162-233 AB003411.1/168-239 AF291171.1/222-293 AF291173.1/222-293 AF291177.1/165-236,162-233,0,71,AB003405.1/162-233
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,32,AB003406.1,1,sp|AB003406.1|AB003406 Halorubrum lacusprofundi DNA; ribosomal spacer region containing tRNA-Ala.,0,3,158,229,77.61,GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA,AB003406.1/158-229,158-229,0,71,AB003406.1/158-229
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,33,AB003407.1,1,sp|AB003407.1|AB003407 Halorubrum distributum DNA; ribosomal spacer region containing tRNA-Ala.,0,4,161,232,79.44,GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA,AB003404.1/165-236 AB003405.1/162-233 AB003407.1/161-232 AB003408.1/162-233 AB003411.1/168-239 AF291171.1/222-293 AF291173.1/222-293 AF291177.1/165-236,161-232,0,71,AB003407.1/161-232
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,34,AB003408.1,1,sp|AB003408.1|AB003408 Halorubrum coriense DNA; ribosomal spacer region containing tRNA-Ala.,0,5,162,233,79.44,GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA,AB003404.1/165-236 AB003405.1/162-233 AB003407.1/161-232 AB003408.1/162-233 AB003411.1/168-239 AF291171.1/222-293 AF291173.1/222-293 AF291177.1/165-236,162-233,0,71,AB003408.1/162-233
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,35,AB003409.1,1,sp|AB003409.1|AB003409 Natronobacterium pharaonis DNA; ribosomal spacer region containing tRNA-Ala.,0,6,96,167,79.40,GGGCCCAUAGCUCAGUGGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGGGUCCA,AB003409.1/96-167 AE005128.1/2987-3058 K02971.1/2517-2588 X03407.1/2488-2559,96-167,0,71,AB003409.1/96-167
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,36,AB003410.1,1,sp|AB003410.1|AB003410 Natronobacterium gregoryi DNA; ribosomal spacer region containing tRNA-Ala.,0,7,153,224,77.57,GGGCCCAUAGCUCAGUGGGAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGGGUCCA,AB003410.1/153-224 X72588.1/3640-3711,153-224,0,71,AB003410.1/153-224
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,37,AB003411.1,1,sp|AB003411.1|AB003411 Halorubrum vacuolatum DNA; ribosomal spacer region containing tRNA-Ala.,0,8,168,239,79.44,GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA,AB003404.1/165-236 AB003405.1/162-233 AB003407.1/161-232 AB003408.1/162-233 AB003411.1/168-239 AF291171.1/222-293 AF291173.1/222-293 AF291177.1/165-236,168-239,0,71,AB003411.1/168-239
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,43,AB005747.1,1,sp|AB005747.1|AB005747 Pyrococcus furiosus DNA for tRNA-Glu.,0,9,55,131,72.31,GCCCCGGUGGGUAGCCCGGUCAAACAUGCGGGCCUUUCGAGCCCGCGCCCCGGGUUCAAAUCCCGGCCGGGGCACCA,AB005747.1/55-131,55-131,0,76,AB005747.1/55-131
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,45,AB006961.1,1,sp|AB006961.1|AB006961 Halobacterium halobium gene for ribosomal proteins; partial and complete cds.,1,10,377,307,62.22,GCGCUGGUAGUGUAGUGGUAUCACGUGACCUUGCCAUGGUCACAACCUGGGUUCAAAUCCCAGCCAGCGCA,AB006961.1/377-307 AE005077.1/153-83,377-307,0,70,AB006961.1/377-307
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,267,AB030282.1,1,sp|AB030282.1|AB030282 Halobacterium halobium genes for ribosomal proteins and RNA-polymerase D; complete cds.,0,11,334,416,65.44,GUCGUGGUAGCCUAGCCUGGUCAAGGCGCAGGGUUGCUAACUCUGUGGCGUAACUCUCCGGGGUUCAAAUCCCCGCCACGACG,AB030282.1/334-416,334-416 2738-2817,0,82,AB030282.1/334-416
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,267,AB030282.1,1,sp|AB030282.1|AB030282 Halobacterium halobium genes for ribosomal proteins and RNA-polymerase D; complete cds.,0,12,2735,2817,44.47,GCAGGGAUAGCCAAGUUUGGCCAAAGGGGCACGUUCAGGGCGCUGUCCCGUAGGGUUCGCAGGUUCAAAUCCUGCUCCCUGCA,****    NEW  HIT  #0  ****,334-416 2738-2817,1,79,AB030282.1/2735-2817
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,287,AB033996.1,1,sp|AB033996.1|AB033996 Thermococcus litoralis agt gene for alanine glyoxylate transaminase; complete cds.,1,13,1597,1510,74.41,GCGGGGGUUGCCGAGCCUGGUCAAAGGCGCGGGAUUGAGGGUCCCGUCCCGUAGGGGUUCCGGGGUUCAAAUCCCCGCCCCCGCACCA,AB033996.1/1597-1510 AE010205.1/1425-1338 AP000005.1/169638-169551 AJ248286.2/47829-47742,1597-1510,0,87,AB033996.1/1597-1510
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,660,AB072815.1,1,sp|AB072815.1|AB072815 Halosimplex carlsbadense rrnB operon genes for 16S rRNA; tRNA-Ala; 23S rRNA; complete and partial sequence.,0,14,1566,1637,85.50,GGGCCCAUAGCUCAGCGGCAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGGUUCAAAUCCCAGUGGGUCCA,AB072815.1/1566-1637 AB072816.1/1567-1638,1566-1637,0,71,AB072815.1/1566-1637
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,661,AB072816.1,1,sp|AB072816.1|AB072816 Halosimplex carlsbadense rrnC operon genes for 16S rRNA; tRNA-Ala; 23S rRNA; complete and partial sequence.,0,15,1567,1638,85.50,GGGCCCAUAGCUCAGCGGCAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGGUUCAAAUCCCAGUGGGUCCA,AB072815.1/1566-1637 AB072816.1/1567-1638,1567-1638,0,71,AB072816.1/1567-1638
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,946,AE000796.1,1,sp|AE000796.1|AE000796 Methanobacterium thermoautotrophicum from bases 10151 to 26221 (section 2 of 148) of the complete genome.,0,16,7323,7407,66.99,GCCGGGAUAGCCUAGCCAGGUAAGGCGCAAGACUGGAAAUCUUGUGGAGCUUUGCUCCUCCUGGGUUCAAAUCCCAGUCCCGGCG,AE000796.1/7323-7407 AE000877.1/1878-1962,7323-7407 11131-11253,0,84,AE000796.1/7323-7407
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,946,AE000796.1,1,sp|AE000796.1|AE000796 Methanobacterium thermoautotrophicum from bases 10151 to 26221 (section 2 of 148) of the complete genome.,0,17,11131,11253,52.98,GGGACCGUAGGGUAGCUUGGUCCAUCCUCCCAGCCAUUGAAGAAGUUUCCGGACUUUUCAACUGGAACGGGGAUGGUCAGCACCGGAACGCUGGAGACCCGAGUUCAAAUCUCGGCGGUCCCA,AE000796.1/11131-11253,7323-7407 11131-11253,0,122,AE000796.1/11131-11253
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,994,AE000844.1,1,sp|AE000844.1|AE000844 Methanobacterium thermoautotrophicum from bases 559173 to 571236 (section 50 of 148) of the complete genome.,0,18,8908,8991,58.19,GCAGGGGUGGUCGAGCGGUCAAAGGCGCUAGGUUGAGGGCCUAGUGGGGGAGUCCCUUCGCGGGUUCGAAUCCCGUCCCCUGCA,AE000844.1/8908-8991,8908-8991,0,83,AE000844.1/8908-8991
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1003,AE000853.1,1,sp|AE000853.1|AE000853 Methanobacterium thermoautotrophicum from bases 666487 to 679269 (section 59 of 148) of the complete genome.,1,19,12540,12468,68.51,GCCUCGGUAGCUUAGGUGGGAGAGCGCGGGAUUCGUAAUCCCGAGGUCGCGGGUUCAAUCCCCGCCCGGGGCU,AE000853.1/12540-12468,12540-12468,0,72,AE000853.1/12540-12468
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1006,AE000856.1,1,sp|AE000856.1|AE000856 Methanobacterium thermoautotrophicum from bases 702375 to 714311 (section 62 of 148) of the complete genome.,0,20,6431,6504,78.86,GGGCUGGUAGCUCAGGUUGGUAGAGCGUCGCCUUGGCAUGGCGGAGGCCCCGGGUUCAAAUCCCGGCCAGUCCA,AE000856.1/6431-6504,6431-6504,0,73,AE000856.1/6431-6504
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1007,AE000857.1,1,sp|AE000857.1|AE000857 Methanobacterium thermoautotrophicum from bases 714254 to 725965 (section 63 of 148) of the complete genome.,0,21,5774,5847,79.89,GCGGUUGUAGUCUAGUCUGGUUAGGACUCGGGCCUUCCAAGCCCGCGACCCGGGUUCAAAUCCCGGCAACCGCA,AE000857.1/5774-5847,5698-5771 5774-5847,0,73,AE000857.1/5774-5847
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1007,AE000857.1,1,sp|AE000857.1|AE000857 Methanobacterium thermoautotrophicum from bases 714254 to 725965 (section 63 of 148) of the complete genome.,0,22,5698,5771,76.09,GCGGCGUUAGUCCAGCCUGGUUAAGACACUGGCCUGCCACGCCAGCGACCCGGGUUCAAAUCCCGGACGCCGCA,AE000857.1/5698-5771,5698-5771 5774-5847,0,73,AE000857.1/5698-5771
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1010,AE000860.1,1,sp|AE000860.1|AE000860 Methanobacterium thermoautotrophicum from bases 749346 to 763438 (section 66 of 148) of the complete genome.,0,23,287,359,73.31,GCCGUGGUAGUUCAGUUGGGAGAACGCCAGACUGAAGAUCUGGAUGUCGCUGGUUCAAGUCCGGCCCACGGCA,AE000860.1/287-359,211-282 287-359,0,72,AE000860.1/287-359
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1010,AE000860.1,1,sp|AE000860.1|AE000860 Methanobacterium thermoautotrophicum from bases 749346 to 763438 (section 66 of 148) of the complete genome.,0,24,211,282,69.69,GGGCCGGUGGUCUAGGGGUAUGAUACCUCCCUGACACGGAGGUGAUCACGAGUUCGAAUCUCGUCCGGCCCA,AE000860.1/211-282,211-282 287-359,0,71,AE000860.1/211-282
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1019,AE000869.1,1,sp|AE000869.1|AE000869 Methanobacterium thermoautotrophicum from bases 862690 to 876388 (section 75 of 148) of the complete genome.,0,25,1251,1322,57.37,AGUCCCGUGGGGUAGUGGUAAUCCUGCUGGGCUUUGGACCCGGCGACAGCGGUUCGACUCCGCUCGGGACUA,AE000869.1/1251-1322,1111-1182 1251-1322,0,71,AE000869.1/1251-1322
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1019,AE000869.1,1,sp|AE000869.1|AE000869 Methanobacterium thermoautotrophicum from bases 862690 to 876388 (section 75 of 148) of the complete genome.,0,26,1111,1182,43.93,AGUCCCGUGGGGUAAUGGCAAUCCUGAUGGACUCUGGAUCCAUCGAUAGCGGUUCGACUCCGCUCGGGACUA,AE000869.1/1111-1182,1111-1182 1251-1322,0,71,AE000869.1/1111-1182
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1026,AE000876.1,1,sp|AE000876.1|AE000876 Methanobacterium thermoautotrophicum from bases 947295 to 966282 (section 82 of 148) of the complete genome.,0,27,7136,7209,85.65,GGGCCCGUAGCUCAGUCUGGCAGAGCGCUUGGCUUUUAACCAAGUGGUCGCGGGUUCAAUUCCCGUCGGGCCCG,AE000876.1/7136-7209,6645-6718 6726-6800 6855-6927 7056-7127 7136-7209,0,73,AE000876.1/7136-7209
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1026,AE000876.1,1,sp|AE000876.1|AE000876 Methanobacterium thermoautotrophicum from bases 947295 to 966282 (section 82 of 148) of the complete genome.,0,28,7056,7127,66.98,GCCCUGGUGGUGUAGGGGCUAUCAUGCGGGCCUGUCGAGCCCGCGACUCGGGUUCAAUUCCCGGCCAGGGCG,AE000876.1/7056-7127,6645-6718 6726-6800 6855-6927 7056-7127 7136-7209,0,71,AE000876.1/7056-7127
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1026,AE000876.1,1,sp|AE000876.1|AE000876 Methanobacterium thermoautotrophicum from bases 947295 to 966282 (section 82 of 148) of the complete genome.,0,29,6855,6927,54.96,CCCGCCUUAGCUCAAUUGGCAGAGCAUCGGACUGUAGAUCCGAGGGUUGCUGGUUCAAGUCCGGCAGGCGGGA,AE000876.1/6855-6927,6645-6718 6726-6800 6855-6927 7056-7127 7136-7209,0,72,AE000876.1/6855-6927
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1026,AE000876.1,1,sp|AE000876.1|AE000876 Methanobacterium thermoautotrophicum from bases 947295 to 966282 (section 82 of 148) of the complete genome.,0,30,6726,6800,64.82,GGGACCAUAGGGUAGCUUGGUCGAUCCUUUGGGCUUUGGGAGCCUGAGACCCCGGUUCAAAUCCGGGUGGUCCCA,AE000876.1/6726-6800,6645-6718 6726-6800 6855-6927 7056-7127 7136-7209,0,74,AE000876.1/6726-6800
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1026,AE000876.1,1,sp|AE000876.1|AE000876 Methanobacterium thermoautotrophicum from bases 947295 to 966282 (section 82 of 148) of the complete genome.,0,31,6645,6718,75.91,GCCUCGGUAGCUCAGUCUGGUGGAGCGCGAGACUUGUAAUCUCGUGGUCGCGGGUUCAAUUCCCGUCCGGGGCU,AE000876.1/6645-6718,6645-6718 6726-6800 6855-6927 7056-7127 7136-7209,0,73,AE000876.1/6645-6718
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1027,AE000877.1,1,sp|AE000877.1|AE000877 Methanobacterium thermoautotrophicum from bases 966225 to 976858 (section 83 of 148) of the complete genome.,0,32,1878,1962,66.99,GCCGGGAUAGCCUAGCCAGGUAAGGCGCAAGACUGGAAAUCUUGUGGAGCUUUGCUCCUCCUGGGUUCAAAUCCCAGUCCCGGCG,AE000796.1/7323-7407 AE000877.1/1878-1962,1753-1837 1878-1962,0,84,AE000877.1/1878-1962
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1027,AE000877.1,1,sp|AE000877.1|AE000877 Methanobacterium thermoautotrophicum from bases 966225 to 976858 (section 83 of 148) of the complete genome.,0,33,1753,1837,68.64,GCCGGGAUAGCCUAGCCAGGUAAGGCGCGGGACUUGAGAUCCCGUGGAGAUUCUCUCCGCCUGGGUUCAAAUCCCAGUCCCGGCG,AE000877.1/1753-1837,1753-1837 1878-1962,0,84,AE000877.1/1753-1837
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1043,AE000893.1,1,sp|AE000893.1|AE000893 Methanobacterium thermoautotrophicum from bases 1154519 to 1165808 (section 99 of 148) of the complete genome.,1,34,5589,5514,61.55,GCCGGGGUGGGGUAGGCGGUUAUCCUUCGGGACUGUGGAUCCCGCGACUCGGGUUCAAAUCUCGGCCCCGGCCCCA,AE000893.1/5589-5514,5978-5906 5901-5829 5810-5736 5691-5608 5589-5514 4645-4574 4554-4413,0,75,AE000893.1/5589-5514
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1043,AE000893.1,1,sp|AE000893.1|AE000893 Methanobacterium thermoautotrophicum from bases 1154519 to 1165808 (section 99 of 148) of the complete genome.,1,35,5691,5608,68.17,GCGGGGGUGCCCGAGCUGGCCAAAGGGGACAGGCUUAGGACCUGUUGGCGUAGGCCUACCAGGGUUCGAAUCCCUGCCCCCGCA,AE000893.1/5691-5608,5978-5906 5901-5829 5810-5736 5691-5608 5589-5514 4645-4574 4554-4413,0,83,AE000893.1/5691-5608
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1043,AE000893.1,1,sp|AE000893.1|AE000893 Methanobacterium thermoautotrophicum from bases 1154519 to 1165808 (section 99 of 148) of the complete genome.,1,36,5810,5736,77.40,GCUCCGGUAGUGUAGUCCGGCCAAUCAUUUCGGCCUUUCGAGCCGAAGACUCGGGUUCAAAUCCCGGCCGGAGCA,AE000893.1/5810-5736,5978-5906 5901-5829 5810-5736 5691-5608 5589-5514 4645-4574 4554-4413,0,74,AE000893.1/5810-5736
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1043,AE000893.1,1,sp|AE000893.1|AE000893 Methanobacterium thermoautotrophicum from bases 1154519 to 1165808 (section 99 of 148) of the complete genome.,1,37,5901,5829,73.35,GGGCCCAUAGCUUAGCCAGGUAGAGGCCCGGCUCAUAACCGGGCGGCCAUGGGUUCGAAUCCCAUUGGGCCCA,AE000893.1/5901-5829,5978-5906 5901-5829 5810-5736 5691-5608 5589-5514 4645-4574 4554-4413,0,72,AE000893.1/5901-5829
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1043,AE000893.1,1,sp|AE000893.1|AE000893 Methanobacterium thermoautotrophicum from bases 1154519 to 1165808 (section 99 of 148) of the complete genome.,1,38,5978,5906,66.51,GCCGCCGUAGCUCAGUAGGUAGAGCGUUCGGCUGUUAACCGAUUGGUCACAGGUUCGAGCCCUGUCGGCGGCG,AE000893.1/5978-5906,5978-5906 5901-5829 5810-5736 5691-5608 5589-5514 4645-4574 4554-4413,0,72,AE000893.1/5978-5906
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1043,AE000893.1,1,sp|AE000893.1|AE000893 Methanobacterium thermoautotrophicum from bases 1154519 to 1165808 (section 99 of 148) of the complete genome.,1,39,4554,4413,40.99,GGGGUCAUGGUGUAACCAGGCUAUCAUCUGGGACUCCAGUUGUCUUUGAAGAAAAUGCGCGCUCUGACUACAGUAUGAUGACCAAUUGGAGUACUGAGACAAGAGAAAUCCUAGGAUCUGGGUUCAAAUCCCAGUGACCCCA,AE000893.1/4554-4413,5978-5906 5901-5829 5810-5736 5691-5608 5589-5514 4645-4574 4554-4413,0,141,AE000893.1/4554-4413
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1043,AE000893.1,1,sp|AE000893.1|AE000893 Methanobacterium thermoautotrophicum from bases 1154519 to 1165808 (section 99 of 148) of the complete genome.,1,40,4645,4574,50.63,GCCAAGGUAGCUUAGUGGCGAAGCGGUGGACUGCAGAUCCAUUACACGUGAGUUCAAAUCUCACCCUUGGCU,AE000893.1/4645-4574,5978-5906 5901-5829 5810-5736 5691-5608 5589-5514 4645-4574 4554-4413,0,71,AE000893.1/4645-4574
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1044,AE000894.1,1,sp|AE000894.1|AE000894 Methanobacterium thermoautotrophicum from bases 1165751 to 1176238 (section 100 of 148) of the complete genome.,1,41,8519,8445,71.44,AGCGGGGUGGGGUAGUCUGGUGAUCCCGCGGGGCUCAUAACCCCGAGAUCCCUAGUUCAAAUCUAGGCCCCGCUA,AE000894.1/8519-8445,8519-8445,0,74,AE000894.1/8519-8445
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1045,AE000895.1,1,sp|AE000895.1|AE000895 Methanobacterium thermoautotrophicum from bases 1176181 to 1189406 (section 101 of 148) of the complete genome.,0,42,4974,5048,81.21,GGGCCCGUAGCCUAGCCAGGAUAGGGCAUCAGACUCCUAAUCUGAAGGUCCCGGGUUCAAAUCCCGGCGGGUCCG,AE000895.1/4974-5048,4876-4950 4974-5048,0,74,AE000895.1/4974-5048
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1045,AE000895.1,1,sp|AE000895.1|AE000895 Methanobacterium thermoautotrophicum from bases 1176181 to 1189406 (section 101 of 148) of the complete genome.,0,43,4876,4950,88.00,GGGCCCGUAGCCUAGCCAGGAUAGGGCGUCGGACUUCUAAUCCGAAGGUCCCGGGUUCAAAUCCCGGCGGGUCCG,AE000895.1/4876-4950,4876-4950 4974-5048,0,74,AE000895.1/4876-4950
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1047,AE000897.1,1,sp|AE000897.1|AE000897 Methanobacterium thermoautotrophicum from bases 1199998 to 1212024 (section 103 of 148) of the complete genome.,0,44,8316,8391,81.51,GGGCCCGUAGUCUAGCCUGGAAUAUGACGUGGGACUUCGGAUCCCAAGGUCGGGGGUUCAAAUCCCCCCGGGUCCG,AE000897.1/8316-8391,8316-8391,0,75,AE000897.1/8316-8391
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1055,AE000905.1,1,sp|AE000905.1|AE000905 Methanobacterium thermoautotrophicum from bases 1293944 to 1305586 (section 111 of 148) of the complete genome.,0,45,2142,2213,69.61,GGGCCGGUGGUCUAGGGGUAUGAUACCUCGCUCACACCGAGGUGGUCACGAGUUCGAAUCUCGUCCGGCCCA,AE000905.1/2142-2213,2046-2117 2142-2213,0,71,AE000905.1/2142-2213
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1055,AE000905.1,1,sp|AE000905.1|AE000905 Methanobacterium thermoautotrophicum from bases 1293944 to 1305586 (section 111 of 148) of the complete genome.,0,46,2046,2117,72.73,GGGCCGGUGGUCUAGGGGUAUGAUACCUCGCUUACAACGAGGUGGUCACGAGUUCGAAUCUCGUCCGGCCCA,AE000905.1/2046-2117,2046-2117 2142-2213,0,71,AE000905.1/2046-2117
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1063,AE000913.1,1,sp|AE000913.1|AE000913 Methanobacterium thermoautotrophicum from bases 1387543 to 1399771 (section 119 of 148) of the complete genome.,0,47,66,137,68.84,GCCCUGAUAGUGUAGCGGAUAUCACGUAGGACUGCGGAUCCUAUUACCCGGGUUCAAGUCCCGGUCAGGGCA,AE000913.1/66-137,66-137,0,71,AE000913.1/66-137
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1067,AE000917.1,1,sp|AE000917.1|AE000917 Methanobacterium thermoautotrophicum from bases 1434059 to 1444633 (section 123 of 148) of the complete genome.,1,48,6866,6758,75.13,GCCGGGGUGGCUCAGCUGGUUAGAGCGCACGGCUCAUAGGGUAUUAAGCAGUGCUCUGACUUUUUCCUGGGAUACCGUGAGGCCGCGGGUUCGAAUCCCGCCCCCGGCA,AE000917.1/6866-6758,6866-6758,0,108,AE000917.1/6866-6758
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1074,AE000924.1,1,sp|AE000924.1|AE000924 Methanobacterium thermoautotrophicum from bases 1515051 to 1525773 (section 130 of 148) of the complete genome.,1,49,10654,10581,80.97,GGGCCCGUGGCUCAGGUGGUUAGAGCGCACGGCUGAUAACCGUGAGGCCCUGGGUUCGAAUCCCAGCGGGCCCA,AE000924.1/10654-10581 M65060.1/7106-7033,10654-10581,0,73,AE000924.1/10654-10581
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1078,AE000928.1,1,sp|AE000928.1|AE000928 Methanobacterium thermoautotrophicum from bases 1560642 to 1578217 (section 134 of 148) of the complete genome.,0,50,16591,16663,69.14,GCCUUAGUGGCUCAGGUGGUAGAGCGAUGCCUUGGUAAGGCAUAGGUCGGGGGUUCGAAUCCCCCCUAAGGCU,AE000928.1/16591-16663,16473-16555 16591-16663,0,72,AE000928.1/16591-16663
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1078,AE000928.1,1,sp|AE000928.1|AE000928 Methanobacterium thermoautotrophicum from bases 1560642 to 1578217 (section 134 of 148) of the complete genome.,0,51,16473,16555,66.92,GCAGGGGUGCCCGAGCGGCCAAAGGGGGAGGACUUAAGAUCCUCUGGCGCAGGCCUUCGAGGGUUCGAAUCCCUUCCCCUGCA,AE000928.1/16473-16555,16473-16555 16591-16663,0,82,AE000928.1/16473-16555
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1080,AE000930.1,1,sp|AE000930.1|AE000930 Methanobacterium thermoautotrophicum from bases 1592014 to 1607566 (section 136 of 148) of the complete genome.,0,52,11782,11855,88.42,GGGCCCGUAGCUCAGACUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA,AE000930.1/11782-11855 AE000940.1/11161-11234 X15364.1/3230-3303,11782-11855,0,73,AE000930.1/11782-11855
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1090,AE000940.1,1,sp|AE000940.1|AE000940 Methanobacterium thermoautotrophicum from bases 1709212 to 1724499 (section 146 of 148) of the complete genome.,0,53,9127,9211,69.47,GCCGGGGUGGCCCAGUCUGGUACGGCGUUGGCCUGCUAAGCCAAUGAUCCUUUGGAUCUCGCGGGUUCAAAUCCCGUCCCCGGCG,AE000940.1/9127-9211 X15364.1/1198-1282,9127-9211 11161-11234,0,84,AE000940.1/9127-9211
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1090,AE000940.1,1,sp|AE000940.1|AE000940 Methanobacterium thermoautotrophicum from bases 1709212 to 1724499 (section 146 of 148) of the complete genome.,0,54,11161,11234,88.42,GGGCCCGUAGCUCAGACUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA,AE000930.1/11782-11855 AE000940.1/11161-11234 X15364.1/3230-3303,9127-9211 11161-11234,0,73,AE000940.1/11161-11234
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1093,AE000943.1,1,sp|AE000943.1|AE000943 Archaeoglobus fulgidus DSM 4304 section 164 of 172 of the complete genome.,0,55,6855,6927,69.46,GGGCUCGUGGUCUAGGGGUCAUGACGUCGCCUUGACGAGGCGAAGGUCGCCCGUUCGAAUCGGGCCGAGCCCA,AE000943.1/6855-6927,6855-6927,0,72,AE000943.1/6855-6927
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1098,AE000948.1,1,sp|AE000948.1|AE000948 Archaeoglobus fulgidus DSM 4304 section 159 of 172 of the complete genome.,1,56,299,225,89.55,GGGCCCGUAGCUUAGCCAGGUCAGAGCGCCCGGCUCAUAACCGGGCGGUCGAGGGUUCGAAUCCCUCCGGGCCCA,AE000948.1/299-225,299-225,0,74,AE000948.1/299-225
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1100,AE000950.1,1,sp|AE000950.1|AE000950 Archaeoglobus fulgidus DSM 4304 section 157 of 172 of the complete genome.,0,57,10202,10275,84.04,GGGCCGGUAGCUUAGCCAGGCAGAGCGCGGGACUCUUAAUCCCGCAGUCGGGGGUUCAAAUCCCUCCCGGCCCG,AE000950.1/10202-10275,10202-10275,0,73,AE000950.1/10202-10275
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1101,AE000951.1,1,sp|AE000951.1|AE000951 Archaeoglobus fulgidus DSM 4304 section 156 of 172 of the complete genome.,1,58,2247,2175,73.97,GGGGCCGUGGGGUAGCCUGGUAGCCUCUCGGCCUGGGGCGCCGGUGACCCGAGUUCAAAUCUCGGCGGCCCCA,AE000951.1/2247-2175,2247-2175,0,72,AE000951.1/2247-2175
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1103,AE000953.1,1,sp|AE000953.1|AE000953 Archaeoglobus fulgidus DSM 4304 section 154 of 172 of the complete genome.,1,59,9739,9666,76.54,GCCCGGGUAGCUCAGCCAGGGAGAGCGUGCGGCUGAAGACCGCAUAGUCCCCGGUUCAAAUCCGGGUCCGGGCA,AE000953.1/9739-9666,9739-9666,0,73,AE000953.1/9739-9666
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1104,AE000954.1,1,sp|AE000954.1|AE000954 Archaeoglobus fulgidus DSM 4304 section 153 of 172 of the complete genome.,1,60,13178,13095,74.40,GCGGGGGUUGCCGAGCCAGGAAAAGGCGCAGGGCUUAAGACCCUGUCCCGAAGGGGUCCGCGGGUUCGAAUCCCGCCCCCCGCA,AE000954.1/13178-13095,13178-13095,0,83,AE000954.1/13178-13095
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1109,AE000959.1,1,sp|AE000959.1|AE000959 Archaeoglobus fulgidus DSM 4304 section 148 of 172 of the complete genome.,0,61,9797,9870,81.49,GGGCCGGUAGCUCAGUCUGGUAGAGCGUCGCCUUGGCAUGGCGAAGGCCUGGGGUUCAAAUCCCCACCGGUCCA,AE000959.1/9797-9870,9797-9870,0,73,AE000959.1/9797-9870
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1112,AE000962.1,1,sp|AE000962.1|AE000962 Archaeoglobus fulgidus DSM 4304 section 145 of 172 of the complete genome.,0,62,8561,8631,75.07,GCGGUCGUAGUCUAGCGGCAGGACACGGGCCUCCCGAGCCCGUUGCCCGGGUUCGAAUCCCGGCGGCCGCA,AE000962.1/8561-8631,8561-8631,0,70,AE000962.1/8561-8631
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1114,AE000964.1,1,sp|AE000964.1|AE000964 Archaeoglobus fulgidus DSM 4304 section 143 of 172 of the complete genome.,1,63,10249,10176,71.27,GGGGCCGUAGGGUAGCCUGGUGAUCCUCUCGGCUUUGGGAGCCGGUGACCCGAGUUCAAAUCUCGGCGGCCCCA,AE000964.1/10249-10176,10249-10176,0,73,AE000964.1/10249-10176
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1115,AE000965.1,1,sp|AE000965.1|AE000965 Archaeoglobus fulgidus DSM 4304 section 142 of 172 of the complete genome.,1,64,156,85,85.55,GGGCUCGUAGCUCAGCGGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGCGGGUUCAAAUCCCGCCGAGUCCA,AE000965.1/156-85 M19340.1/52-123,156-85,0,71,AE000965.1/156-85
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1117,AE000967.1,1,sp|AE000967.1|AE000967 Archaeoglobus fulgidus DSM 4304 section 140 of 172 of the complete genome.,1,65,667,572,62.66,CCCGCCUUAGCUCAGAGGUAGAGCGUGGGACUGUAGUCCGCCACUCCGCGGCAGGCGGAGAUCCCAUGGUCCCCGGUUCAAAUCCGGGAGGCGGGA,AE000967.1/667-572,667-572,0,95,AE000967.1/667-572
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1122,AE000972.1,1,sp|AE000972.1|AE000972 Archaeoglobus fulgidus DSM 4304 section 135 of 172 of the complete genome.,0,66,2046,2119,86.34,GGGCUCGUAGCUCAGCCAGGCAGAGCGACGGGCUUUUAACCCGUCGGUCGCGGGUUCAAAUCCCGUCGAGCCCG,AE000972.1/2046-2119,2046-2119 178-106,0,73,AE000972.1/2046-2119
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1122,AE000972.1,1,sp|AE000972.1|AE000972 Archaeoglobus fulgidus DSM 4304 section 135 of 172 of the complete genome.,1,67,178,106,83.16,GCCGCCGUGGCUCAGCUGGCAGAGCGGGUGACUUGUAAUCACCAGGUCGCGGGUUCAAAUCCCGCCGGCGGCU,AE000972.1/178-106,2046-2119 178-106,0,72,AE000972.1/178-106
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1135,AE000985.1,1,sp|AE000985.1|AE000985 Archaeoglobus fulgidus DSM 4304 section 122 of 172 of the complete genome.,1,68,9062,8990,81.01,GGGCUCGUGGUCUAGCGGUUAUGACGUCGCCCUUACAAGGCGGAGAUCGCCGGUUCGAAUCCGGCCGAGCCCA,AE000985.1/9062-8990,9062-8990,0,72,AE000985.1/9062-8990
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1148,AE000998.1,1,sp|AE000998.1|AE000998 Archaeoglobus fulgidus DSM 4304 section 109 of 172 of the complete genome.,1,69,9848,9767,72.00,GCCGGGGUUGCCGAGCGGUAAGGCGCACGCCUGGAGAGCGUGUGGGCGUUCGCCCGCGUGGGUUCGAAUCCCACCCCCGGCG,AE000998.1/9848-9767,9848-9767,0,81,AE000998.1/9848-9767
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1150,AE001000.1,1,sp|AE001000.1|AE001000 Archaeoglobus fulgidus DSM 4304 section 107 of 172 of the complete genome.,1,70,9164,9092,80.76,GCCGCCGUGGCUCAGCUGGCAGAGCGGGUGAUUCGUAAUCACCAGGUCGCGGGUUCAAAUCCCGCCGGCGGCU,AE001000.1/9164-9092,9164-9092,0,72,AE001000.1/9164-9092
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1152,AE001002.1,1,sp|AE001002.1|AE001002 Archaeoglobus fulgidus DSM 4304 section 105 of 172 of the complete genome.,0,71,5471,5543,79.36,GCCACGGUAGCUCAGCAGGAAGAGCGCGUGCUUGGUAAGCACGAGGUCCCGGGUUCAAAUCCCGGCCGUGGCU,AE001002.1/5471-5543,5471-5543 2723-2652,0,72,AE001002.1/5471-5543
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1152,AE001002.1,1,sp|AE001002.1|AE001002 Archaeoglobus fulgidus DSM 4304 section 105 of 172 of the complete genome.,1,72,2723,2652,53.10,GCCAGGGUGGCAGAGGGGCUAUGCGGCGGACUGCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGCU,AE001002.1/2723-2652,5471-5543 2723-2652,0,71,AE001002.1/2723-2652
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1157,AE001007.1,1,sp|AE001007.1|AE001007 Archaeoglobus fulgidus DSM 4304 section 100 of 172 of the complete genome.,0,73,11559,11631,74.55,GCGCCGAUGGUGUAGCCUGGUAACACAGGGGCUUGCCGAGCCCCUGCCCCGGGUUCAAAUCCCGGUCGGCGCA,AE001007.1/11559-11631,11559-11631,0,72,AE001007.1/11559-11631
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1164,AE001014.1,1,sp|AE001014.1|AE001014 Archaeoglobus fulgidus DSM 4304 section 93 of 172 of the complete genome.,1,74,205,131,78.77,GCUCCGGUGGUGUAGCCCGGCCAAUCAUACGGGACUCUCGAUCCCGUGACCCGGGUUCAAAUCCCGGCCGGAGCA,AE001014.1/205-131,205-131,0,74,AE001014.1/205-131
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1166,AE001016.1,1,sp|AE001016.1|AE001016 Archaeoglobus fulgidus DSM 4304 section 91 of 172 of the complete genome.,1,75,11208,11134,87.36,GGGCCCGUGGCUCAGCAUGGAUAGAGCGACGGCCUUCUAAGCCGUAGAUCGCGGGUUCAAAUCCCGCCGGGUCCG,AE001016.1/11208-11134,11208-11134,0,74,AE001016.1/11208-11134
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1176,AE001026.1,1,sp|AE001026.1|AE001026 Archaeoglobus fulgidus DSM 4304 section 81 of 172 of the complete genome.,0,76,6103,6176,72.83,GGGGCCGUGGGGUAGCCUGGUGAUCCUGCGGCGUUCGGGACGCCGUGACCCGAGUUCAAAUCUCGGCGGCCCCA,AE001026.1/6103-6176,6103-6176 2871-2787,0,73,AE001026.1/6103-6176
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1176,AE001026.1,1,sp|AE001026.1|AE001026 Archaeoglobus fulgidus DSM 4304 section 81 of 172 of the complete genome.,1,77,2871,2787,59.23,GCCGGGGUUGCAGAGCCAGGCCACUGCGGGAGACUCGAGAUCUCCUGCCCGAAAGGGCGCGUGGGUUCGAAUCCCACCCCCGGCG,AE001026.1/2871-2787,6103-6176 2871-2787,0,84,AE001026.1/2871-2787
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1178,AE001028.1,1,sp|AE001028.1|AE001028 Archaeoglobus fulgidus DSM 4304 section 79 of 172 of the complete genome.,1,78,8638,8567,67.24,GCCCCCGUGGGGUAGGGGACAUCCUGGUGGCCUUCGGAGCCACAGACCCGGGUUCGAUUCCCGGCGGGGGCG,AE001028.1/8638-8567,8638-8567,0,71,AE001028.1/8638-8567
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1180,AE001030.1,1,sp|AE001030.1|AE001030 Archaeoglobus fulgidus DSM 4304 section 77 of 172 of the complete genome.,0,79,10646,10717,84.99,GGGCUCGUAGCUCAGCGGGAGAGCGCCGCCUUCGCGAGGCGGAGGCCGCGGGUUCAAAUCCCGCCGAGUCCA,AE001030.1/10646-10717,10646-10717,0,71,AE001030.1/10646-10717
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1193,AE001043.1,1,sp|AE001043.1|AE001043 Archaeoglobus fulgidus DSM 4304 section 64 of 172 of the complete genome.,0,80,8042,8132,73.09,GCUCCGGUGGUGUAGCCCGGCCAAUCAUUCCGGCCUUUCGAGGUUUCGCCGAAGAGAGCCGGCGACCCGGGUUCAAAUCCCGGCCGGAGCA,AE001043.1/8042-8132,8042-8132 166-95,0,90,AE001043.1/8042-8132
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1193,AE001043.1,1,sp|AE001043.1|AE001043 Archaeoglobus fulgidus DSM 4304 section 64 of 172 of the complete genome.,1,81,166,95,64.74,GGGCCCGUGGGGUAGUGGAUAUCCUGGAGGUCUCCGGAACCUCCGACCCGGGUUCAAUUCCCGGCGGGCCCG,AE001043.1/166-95,8042-8132 166-95,0,71,AE001043.1/166-95
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1194,AE001044.1,1,sp|AE001044.1|AE001044 Archaeoglobus fulgidus DSM 4304 section 63 of 172 of the complete genome.,0,82,11137,11207,76.95,GCGCGGGUAGUCUAGCGGUAGGACAACGCCCUUCCGAGGCGUUAGCCCGGGUUCGAAUCCCGGCCCGCGCA,AE001044.1/11137-11207,11137-11207,0,70,AE001044.1/11137-11207
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1195,AE001045.1,1,sp|AE001045.1|AE001045 Archaeoglobus fulgidus DSM 4304 section 62 of 172 of the complete genome.,1,83,13452,13355,62.59,GCGGGGGUUGCCGAGUGGCCAAAGGCGGUGGACUCAAGACCUGAUGGGGAGAAAUCCACUCCCGUAGGGGUUCGAGGGUUCGAAUCCCUCCCCCCGCA,AE001045.1/13452-13355,13452-13355,0,97,AE001045.1/13452-13355
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1199,AE001049.1,1,sp|AE001049.1|AE001049 Archaeoglobus fulgidus DSM 4304 section 58 of 172 of the complete genome.,0,84,6676,6747,56.25,GCCCGGAUGGGGUAGUGGUUAUCCUCUGGGACUGUGGAUCCCAGGAGCCGGGUUCGAAUCCCGGUCCGGGCC,AE001049.1/6676-6747,6676-6747,0,71,AE001049.1/6676-6747
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1200,AE001050.1,1,sp|AE001050.1|AE001050 Archaeoglobus fulgidus DSM 4304 section 57 of 172 of the complete genome.,1,85,3654,3573,66.12,GCCGGGGUUGCAGAGAGGUACUGCGCCAGCCUUGAGAGCUGGUGCCCGUAAGGGCUCCUGGGUUCAAAUCCCAGCCCCGGCG,AE001050.1/3654-3573,3654-3573,0,81,AE001050.1/3654-3573
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1207,AE001057.1,1,sp|AE001057.1|AE001057 Archaeoglobus fulgidus DSM 4304 section 50 of 172 of the complete genome.,0,86,3283,3354,63.73,GCCCCCGUGGGGUAGCGGAUAUCCUGAGGGGCUGCGGACUCCUCGACCCGGGUUCAACUCCCGGCGGGGGCA,AE001057.1/3283-3354,3283-3354,0,71,AE001057.1/3283-3354
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1212,AE001062.1,1,sp|AE001062.1|AE001062 Archaeoglobus fulgidus DSM 4304 section 45 of 172 of the complete genome.,1,87,8209,8137,74.66,AGCCCCGUGGUGUAGCGGUCAAUCAUGCGGGCCUUUGGAGCCCGCGACCGGGGUUCGAAUCCCCGCGGGGCUA,AE001062.1/8209-8137,8209-8137,0,72,AE001062.1/8209-8137
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1215,AE001065.1,1,sp|AE001065.1|AE001065 Archaeoglobus fulgidus DSM 4304 section 42 of 172 of the complete genome.,0,88,3617,3699,64.99,GCGGGGGUUGCCGAGCGGACAAAGGCGCGGGAUUCAGGGUCCCGUCCCGUAGGGGUUCGAGGGUUCGAAUCCCUCCCCCCGCA,AE001065.1/3617-3699,3617-3699,0,82,AE001065.1/3617-3699
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1222,AE001072.1,1,sp|AE001072.1|AE001072 Archaeoglobus fulgidus DSM 4304 section 35 of 172 of the complete genome.,0,89,4764,4837,80.05,GCCGAGGUAGCCUAGCUGGUUGGGGCGCCUGACUCAUAAUCAGGAGGUCGGGGGUUCGAAUCCCCCCCUCGGCA,AE001072.1/4764-4837,4764-4837,0,73,AE001072.1/4764-4837
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1224,AE001074.1,1,sp|AE001074.1|AE001074 Archaeoglobus fulgidus DSM 4304 section 33 of 172 of the complete genome.,0,90,6971,7053,65.64,GCGGGGGUUGCCGAGCGGACAAAGGCGCAGGAUUGAGGGUCCUGUCCCGUAGGGGUUCGAGGGUUCGAAUCCCUCCCCCCGCA,AE001074.1/6971-7053,6971-7053,0,82,AE001074.1/6971-7053
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1226,AE001076.1,1,sp|AE001076.1|AE001076 Archaeoglobus fulgidus DSM 4304 section 31 of 172 of the complete genome.,0,91,2732,2805,78.74,GGACCCGUAGCCUAGCAGGACAGGGCGUGGGCCUCCUAAGCCCAAGGUCGCGGGUUCGAAUCCCGCCGGGUCCG,AE001076.1/2732-2805,2732-2805,0,73,AE001076.1/2732-2805
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1230,AE001080.1,1,sp|AE001080.1|AE001080 Archaeoglobus fulgidus DSM 4304 section 27 of 172 of the complete genome.,1,92,3358,3276,67.51,GCGGGGGUUGCCGAGCGGCCAAAGGCGCUGGAUUUAGGGUCCAGUCCCGUAGGGGUUCGAGGGUUCGAAUCCCUCCCCCCGCA,AE001080.1/3358-3276,3358-3276,0,82,AE001080.1/3358-3276
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1237,AE001087.1,1,sp|AE001087.1|AE001087 Archaeoglobus fulgidus DSM 4304 section 20 of 172 of the complete genome.,0,93,4936,5008,80.84,GCCGCCGUAGCUUAGCUGGUAGAGCGUCCGGCUGUUAACCGGACGGUCGCAGGUUCGAAUCCUGCCGGCGGCG,AE001087.1/4936-5008,4936-5008 227-118,0,72,AE001087.1/4936-5008
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1237,AE001087.1,1,sp|AE001087.1|AE001087 Archaeoglobus fulgidus DSM 4304 section 20 of 172 of the complete genome.,1,94,227,118,68.05,GCCCGGGUGGUGUAGUCCGGCCUAUCAUGCGGGCCUGUCGUGGAGAUGGGGUCCUUAAGCCCUAAAUCCGCGGAAAGCCCGCGACUCGGGUUCAAAUCCCGGCCCGGGCG,AE001087.1/227-118,4936-5008 227-118,0,109,AE001087.1/227-118
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1238,AE001088.1,1,sp|AE001088.1|AE001088 Archaeoglobus fulgidus DSM 4304 section 19 of 172 of the complete genome.,1,95,11937,11865,80.35,GGGCUCGUGGUCUAGUGGUUAUGACGCCUGCCUCACACGCAGGAGGUCCCCGGUUCGAAUCCGGGCGAGCCCA,AE001088.1/11937-11865,11937-11865 8715-8635,0,72,AE001088.1/11937-11865
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1238,AE001088.1,1,sp|AE001088.1|AE001088 Archaeoglobus fulgidus DSM 4304 section 19 of 172 of the complete genome.,1,96,8715,8635,76.23,GCCGGGGUUGCCGAGCGGUAAGGCGACGGCCUGCUAAGCCGUUGGGCGUUGCCCGCGUGGGUUCGAAUCCCACCCCCGGCG,AE001088.1/8715-8635,11937-11865 8715-8635,0,80,AE001088.1/8715-8635
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1247,AE001097.1,1,sp|AE001097.1|AE001097 Archaeoglobus fulgidus DSM 4304 section 10 of 172 of the complete genome.,1,97,3107,3033,71.77,AGCGGGGUGGGGUAGUCAGGUGAUCCCGGCGGGCUCAUAACCCGCAGAUCCGUGGUUCAAAUCCACGCCCCGCUA,AE001097.1/3107-3033,3107-3033,0,74,AE001097.1/3107-3033
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1250,AE001100.1,1,sp|AE001100.1|AE001100 Archaeoglobus fulgidus DSM 4304 section 7 of 172 of the complete genome.,0,98,77,149,74.32,AGCCCCGUGGGGUAGCGGUCAAUCCUGCCGGACUCUGGAUCCGGCGACGCCGGUUCGAAUCCGGCCGGGGCUA,AE001100.1/77-149,77-149,0,72,AE001100.1/77-149
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1251,AE001101.1,1,sp|AE001101.1|AE001101 Archaeoglobus fulgidus DSM 4304 section 6 of 172 of the complete genome.,1,99,2183,2109,87.60,GGGCCCGUGGCUCAGCCUGGUUAGAGCGCUCGCCUGAUAAGCGAGAGGUCCGGGGUUCGAACCCCCGCGGGCCCA,AE001101.1/2183-2109,2183-2109,0,74,AE001101.1/2183-2109
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1260,AE001110.1,1,sp|AE001110.1|AE001110 Archaeoglobus fulgidus DSM 4304 section 169 of 172 of the complete genome.,1,100,3270,3135,65.70,GGGGUCGUGGCGUAGCCAGGAAGCGCGGCGGGCUCCAGCGGCGUGAUGAUUGACGGGUCUGCUGAGCGGUGAUGACCCGUUGGAGCUCUGACCCGAAGAGACCCGCCAGUCGUGGGUUCAAAUCCCACCGGCCCCA,AE001110.1/3270-3135,3270-3135,0,135,AE001110.1/3270-3135
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1263,AE001113.1,1,sp|AE001113.1|AE001113 Archaeoglobus fulgidus DSM 4304 section 166 of 172 of the complete genome.,0,101,3566,3635,27.35,GCUCUCCUCCCUCCAUUUGAACGUCGCCUUGACGAGGCGAAGGUCCCCGGUUCGAAUCCGGGCGAGCCCA,****    NEW  HIT  #1  ****,,2,0,AE001113.1/3566-3635
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1273,AE004978.1,1,sp|AE004978.1|AE004978 Halobacterium sp. NRC-1 section 9 of 170 of the complete genome.,1,102,8658,8585,74.28,GCCGCCUUAGCUCAGACUGGGAGAGCACUCGACUGAAGAUCGAGCUGUCCCUGGUUCAAAUCCGGGAGGCGGCA,AE004978.1/8658-8585,8658-8585,0,73,AE004978.1/8658-8585
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1274,AE004979.1,1,sp|AE004979.1|AE004979 Halobacterium sp. NRC-1 section 10 of 170 of the complete genome.,1,103,6468,6395,74.98,GGGUUCGUGGUCUAGUCGGUCAUGACGCGGCCUUUACAAGGCCGAGGUCGGUGGUUCGAAUCCGCCCGAACCCA,AE004979.1/6468-6395,6468-6395,0,73,AE004979.1/6468-6395
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1275,AE004980.1,1,sp|AE004980.1|AE004980 Halobacterium sp. NRC-1 section 11 of 170 of the complete genome.,0,104,7739,7847,60.73,GGGCCCUUAGCUUAGUCCGGUUCAAAGCCCCCGGCUCAUAUCAGUGCCGUCGCAUGCGGCGGCGCUGUGGGACACCGGGUGAGCGGUGGUUCAAAUCCGCCAGGGCCCA,AE004980.1/7739-7847,7577-7649 7739-7847 3043-2971,0,108,AE004980.1/7739-7847
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1275,AE004980.1,1,sp|AE004980.1|AE004980 Halobacterium sp. NRC-1 section 11 of 170 of the complete genome.,0,105,7577,7649,63.25,GCCGCCAUAGCUCAGUUGGUAGAGCACGUGGUUGUUACCCACGUUGUCCCAGGUUCGAGCCCUGGUGGCGGCG,AE004980.1/7577-7649,7577-7649 7739-7847 3043-2971,0,72,AE004980.1/7577-7649
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1275,AE004980.1,1,sp|AE004980.1|AE004980 Halobacterium sp. NRC-1 section 11 of 170 of the complete genome.,1,106,3043,2971,50.22,GUCCGGAUAGGGUAGUGGACUAUCCUCUUGGCUUGCGGAGCCAGGGACCGGCGUUCAAAUCGCCGUCCGGACG,AE004980.1/3043-2971,7577-7649 7739-7847 3043-2971,0,72,AE004980.1/3043-2971
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1280,AE004985.1,1,sp|AE004985.1|AE004985 Halobacterium sp. NRC-1 section 16 of 170 of the complete genome.,0,107,754,827,64.55,CCGCCCUUAGCUCAGACUGGUAGAGCAGUCGACUGUAGAUCGACUUGCCCCCCGUUCAAAUCGGGGAGGGCGGA,AE004985.1/754-827,754-827,0,73,AE004985.1/754-827
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1282,AE004987.1,1,sp|AE004987.1|AE004987 Halobacterium sp. NRC-1 section 18 of 170 of the complete genome.,0,108,4240,4324,62.46,GCCGAGGUAGCCUAGCCUGGCCAAGGCGGUUGCUUCGAGAGCAACUGUCCACACGGACUCAGGAGUUCAAAUCUCCUCCUCGGCG,AE004987.1/4240-4324,4240-4324,0,84,AE004987.1/4240-4324
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1299,AE005004.1,1,sp|AE005004.1|AE005004 Halobacterium sp. NRC-1 section 35 of 170 of the complete genome.,0,109,9410,9482,61.86,AGUCCCGUGGUGUAGUGGCCAAUCAUAUGGGCCUUUGGAGCCCACGACGGCGGUUCGAAUCCGCCCGGGACUA,AE005004.1/9410-9482,9410-9482,0,72,AE005004.1/9410-9482
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1301,AE005006.1,1,sp|AE005006.1|AE005006 Halobacterium sp. NRC-1 section 37 of 170 of the complete genome.,1,110,8493,8419,63.10,AGCGGGAUGGGAUAGCCAGGAGAUUCCGCCGGGCUCAUAACCCGGAGAUCGGUAGUUCAAAUCUACCUCCCGCUA,AE005006.1/8493-8419,8493-8419,0,74,AE005006.1/8493-8419
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1304,AE005009.1,1,sp|AE005009.1|AE005009 Halobacterium sp. NRC-1 section 40 of 170 of the complete genome.,0,111,8464,8538,72.48,GGGCGCUUAGCUCAGCUUGGACAGAGCACUUGGCUUCGGACCAAGAUGCCGCGGGUUCAAAUCCUGCAGCGCCCA,AE005009.1/8464-8538,8464-8538,0,74,AE005009.1/8464-8538
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1316,AE005021.1,1,sp|AE005021.1|AE005021 Halobacterium sp. NRC-1 section 52 of 170 of the complete genome.,0,112,6115,6186,70.00,GGGCUCGUAGAUCAGUGGUAGAUCAUCCCCCUGGCACGGGGAAGGCCUCGGGUUCAAAUCCCGACGAGUCCA,AE005021.1/6115-6186,6115-6186,0,71,AE005021.1/6115-6186
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1317,AE005022.1,1,sp|AE005022.1|AE005022 Halobacterium sp. NRC-1 section 53 of 170 of the complete genome.,1,113,5045,4973,66.44,GGGCGUGUGGCCAAGCGGACACGGCGAGAGGUUCCUAACCUCUAGAUCGCGGGUUCGAGUCCCGCCACGCCCG,AE005022.1/5045-4973,5045-4973,0,72,AE005022.1/5045-4973
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1319,AE005024.1,1,sp|AE005024.1|AE005024 Halobacterium sp. NRC-1 section 55 of 170 of the complete genome.,1,114,166,96,72.11,GCGCCGGUAGUCUAGUGGUAGGACCUGAGCCUUCCAAGCUCAUGGCCCGGGUUCAAAUCCCGGUCGGCGCA,AE005024.1/166-96,166-96,0,70,AE005024.1/166-96
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1329,AE005034.1,1,sp|AE005034.1|AE005034 Halobacterium sp. NRC-1 section 65 of 170 of the complete genome.,0,115,4261,4334,86.03,GGGCCGGUAGCUCAGUCUGGCAGAGCGACGGACUCUUAAUCCGUCGGUCGCGUGUUCAAAUCGCGCCCGGCCCG,AE005034.1/4261-4334,4261-4334,0,73,AE005034.1/4261-4334
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1331,AE005036.1,1,sp|AE005036.1|AE005036 Halobacterium sp. NRC-1 section 67 of 170 of the complete genome.,0,116,4845,5020,56.26,GGGGCUGUGGCCAAGCCAGGCAUGGCGACUGACUCCAGAGGCCCGCGCCCGGGACGACGCUCCAGACUGGUAUACCGAGCGGCCGACUGAUCAUCGGUCCGCUGUGACGACCCUCUGGAGUUCCGAGGCGCACCGGAGAUAUCAGUCGAUCGGGGGUUCAAAUCCCUCCGGCCCCA,AE005036.1/4845-5020,4845-5020,0,175,AE005036.1/4845-5020
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1337,AE005042.1,1,sp|AE005042.1|AE005042 Halobacterium sp. NRC-1 section 73 of 170 of the complete genome.,0,117,7993,8064,74.36,GCCGGUGUAGCUCAGCGGUAGAGCGAUUCCUUCGUAAGGAAUAGGCCGAGGGUUCAAAUCCCUCCACCGGCU,AE005042.1/7993-8064,7993-8064,0,71,AE005042.1/7993-8064
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1338,AE005043.1,1,sp|AE005043.1|AE005043 Halobacterium sp. NRC-1 section 74 of 170 of the complete genome.,0,118,4652,4734,69.78,GUCGUGGUAGCCUAGCCUGGUCAAGGCGCAGGGUUGCUAACUCUGUGGCGUAAGCCUCCGGGGUUCAAAUCCCCGCCACGACG,AE005043.1/4652-4734,4652-4734 7054-7138,0,82,AE005043.1/4652-4734
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1338,AE005043.1,1,sp|AE005043.1|AE005043 Halobacterium sp. NRC-1 section 74 of 170 of the complete genome.,0,119,7054,7138,64.43,GCAGGGAUAGCCAAGUUUGGCCAAAGGCGCAGCGUUCAGGGCGCUGUCCCGUAGGGGUUCGCAGGUUCAAAUCCUGCUCCCUGCA,AE005043.1/7054-7138,4652-4734 7054-7138,0,84,AE005043.1/7054-7138
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1343,AE005048.1,1,sp|AE005048.1|AE005048 Halobacterium sp. NRC-1 section 79 of 170 of the complete genome.,1,120,8615,8533,58.38,GGUGAGGUGGCAGAGCGGCCUAUUGCGCCGGUCUUGAAAACCGGUGGCGUCACGCCUCCUGGGUUCGAAUCCCAGCCUCACCG,AE005048.1/8615-8533,8615-8533 4638-4565,0,82,AE005048.1/8615-8533
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1343,AE005048.1,1,sp|AE005048.1|AE005048 Halobacterium sp. NRC-1 section 79 of 170 of the complete genome.,1,121,4638,4565,50.88,GCCAAGGGAGCUUGGGUGGUCCAAGCACUCGAUUUGUAAUCGAGAGUUCGUGGGUUCAAAUCCCACCCUUGGCU,AE005048.1/4638-4565,8615-8533 4638-4565,0,73,AE005048.1/4638-4565
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1349,AE005054.1,1,sp|AE005054.1|AE005054 Halobacterium sp. NRC-1 section 85 of 170 of the complete genome.,0,122,78,152,68.73,GCUCGGUUGGUGUAGUCCGGCCAAUCAUGUUGGCCUUUCGAGCCGACGACCAGGGUUCAAAUCCCUGACCGAGCA,AE005054.1/78-152,78-152 7934-7860,0,74,AE005054.1/78-152
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1349,AE005054.1,1,sp|AE005054.1|AE005054 Halobacterium sp. NRC-1 section 85 of 170 of the complete genome.,1,123,7934,7860,59.86,GCUCCGUUGGUGUAGUCCGGCCAAUCAUCUUGCCCUCUCACGGCAAGGACUAGGGUUCAAAUCCCUGACGGAGCA,AE005054.1/7934-7860 AF227235.1/2070-2144,78-152 7934-7860,0,74,AE005054.1/7934-7860
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1352,AE005057.1,1,sp|AE005057.1|AE005057 Halobacterium sp. NRC-1 section 88 of 170 of the complete genome.,1,124,8124,8040,69.44,GCGAGGGUAGCCAAGCUCGGCCAACGGCGACGGACUCAAGAUCCGUUCUCGUAGGAGUUCGAGGGUUCGAAUCCCUUCCCUCGCA,AE005057.1/8124-8040,8124-8040,0,84,AE005057.1/8124-8040
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1353,AE005058.1,1,sp|AE005058.1|AE005058 Halobacterium sp. NRC-1 section 89 of 170 of the complete genome.,1,125,178,95,71.47,GCGCGGGUAGCCAAGCCAGGAAACGGCGUAGCGCUUAGGACGCUAUCCCGUAGGGGUCCGCCGGUUCAAAUCCGGUCCCGCGCA,AE005058.1/178-95,178-95,0,83,AE005058.1/178-95
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1359,AE005064.1,1,sp|AE005064.1|AE005064 Halobacterium sp. NRC-1 section 95 of 170 of the complete genome.,1,126,3556,3472,64.86,GCGUGGGUAGCCGAGCUAGGUCAAAGGCGCAGCGUUGAGGGCGCUGUCCUGUAGAGGUUCGCCGGUUCGAAUCCGGUCCCACGCA,AE005064.1/3556-3472,3556-3472,0,84,AE005064.1/3556-3472
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1362,AE005067.1,1,sp|AE005067.1|AE005067 Halobacterium sp. NRC-1 section 98 of 170 of the complete genome.,1,127,9840,9766,70.05,GGGUCGGUGGUCUAGUCCGGUUAUGACGGCUCCUUCACACGGAGCAGGUCGGCGGUUCAACUCCGCCCCGACCCA,AE005067.1/9840-9766,9840-9766,0,74,AE005067.1/9840-9766
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1368,AE005073.1,1,sp|AE005073.1|AE005073 Halobacterium sp. NRC-1 section 104 of 170 of the complete genome.,1,128,6178,6021,61.50,GCCCGGGUGGCUUAGCUGGUCAUAGCGCCGCACUCAUAGGGUAUCGAGCUUCGGUGCGGCAUCCCACUGCCACGUGGAUGCUCAGCAUGUCCGCGAGGCCCGCCGAGCCUCGAACCUGGGACAUGCGGAGAUCGAGGGUUCAAAACCCUCCCCGGGCA,AE005073.1/6178-6021,6178-6021,0,157,AE005073.1/6178-6021
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1369,AE005074.1,1,sp|AE005074.1|AE005074 Halobacterium sp. NRC-1 section 105 of 170 of the complete genome.,0,129,4419,4493,69.70,GGGUUGGUGGUCUAGUCAGGCUAUGACACCUCCUUGACAUGGAGGAGGUCGGCGGUUCAAAUCCGCCCCAACCCA,AE005074.1/4419-4493,4419-4493,0,74,AE005074.1/4419-4493
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1372,AE005077.1,1,sp|AE005077.1|AE005077 Halobacterium sp. NRC-1 section 108 of 170 of the complete genome.,1,130,153,83,62.22,GCGCUGGUAGUGUAGUGGUAUCACGUGACCUUGCCAUGGUCACAACCUGGGUUCAAAUCCCAGCCAGCGCA,AB006961.1/377-307 AE005077.1/153-83,153-83,0,70,AE005077.1/153-83
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1373,AE005078.1,1,sp|AE005078.1|AE005078 Halobacterium sp. NRC-1 section 109 of 170 of the complete genome.,0,131,6888,6958,47.58,GGGACCGUGGGGUAGCGGUAUCCUCGGCGCAUGGGGUGCGUCGGACUCGAGUUCGAAUCUCGACGGUCCCA,AE005078.1/6888-6958,6888-6958,0,70,AE005078.1/6888-6958
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1384,AE005089.1,1,sp|AE005089.1|AE005089 Halobacterium sp. NRC-1 section 120 of 170 of the complete genome.,0,132,6614,6687,59.84,GGGUCAGUAGCUCAACUAGGUAGAGCGCCACUCUGAUAAGGUGGAGGCUUGCGGUUCAAAUCCGCACUGACCCA,AE005089.1/6614-6687,6614-6687,0,73,AE005089.1/6614-6687
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1385,AE005090.1,1,sp|AE005090.1|AE005090 Halobacterium sp. NRC-1 section 121 of 170 of the complete genome.,0,133,70,152,69.85,GCGAGGGUGGCCGAGCGGCCAAAGGCGGCGGGCUUAAGACCCGCUCCCGUAGGGGUUCGUGGGUUCGAAUCCCACCUCUCGCA,AE005090.1/70-152,70-152,0,82,AE005090.1/70-152
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1388,AE005093.1,1,sp|AE005093.1|AE005093 Halobacterium sp. NRC-1 section 124 of 170 of the complete genome.,1,134,3236,3164,59.60,GGGCCGGUGGGGUAGCUUGGUAUCCUUCGGCCUUCGGGUGGCCGUAACCGCGAUUCGAAUUCGCGCCGGCCCA,AE005093.1/3236-3164,3236-3164,0,72,AE005093.1/3236-3164
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1391,AE005096.1,1,sp|AE005096.1|AE005096 Halobacterium sp. NRC-1 section 127 of 170 of the complete genome.,0,135,6451,6522,65.68,GCCUGGGUAGCUUAGCGGUAAAGCGCGUCCUUGGUAAGGACGAGACCCCGGAUUCAAAUUCCGGCCUAGGCU,AE005096.1/6451-6522,6451-6522 4072-4002,0,71,AE005096.1/6451-6522
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1391,AE005096.1,1,sp|AE005096.1|AE005096 Halobacterium sp. NRC-1 section 127 of 170 of the complete genome.,1,136,4072,4002,65.26,GCGCUGGUGGUCUAGUGGUAGGACAUGAGCUUCCCAAGCUCAUAGCCCGGGUUCAAUUCCCGGCCAGCGCA,AE005096.1/4072-4002,6451-6522 4072-4002,0,70,AE005096.1/4072-4002
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1394,AE005099.1,1,sp|AE005099.1|AE005099 Halobacterium sp. NRC-1 section 130 of 170 of the complete genome.,1,137,8025,7944,56.38,GCCGGGAUGGCCGAAUGGCAAAGCGCACGCCUGGAAAGCGUGUCCCCUUACGGGGUUCAGGGUUCAAAUCCCUGUCCCGGCG,AE005099.1/8025-7944,8025-7944,0,81,AE005099.1/8025-7944
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1399,AE005104.1,1,sp|AE005104.1|AE005104 Halobacterium sp. NRC-1 section 135 of 170 of the complete genome.,0,138,5168,5240,46.60,UCCGGGGUAGGGUAGUGGACUAUCCUUCAGCCUUGUGGAGGCUGAGACGCGGGUUCGAUUCUCGCCCCUGGAC,AE005104.1/5168-5240,5168-5240,0,72,AE005104.1/5168-5240
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1400,AE005105.1,1,sp|AE005105.1|AE005105 Halobacterium sp. NRC-1 section 136 of 170 of the complete genome.,0,139,2061,2133,63.72,GGGACUGUAGGGUAGCUUGGUAUCCUUCGGGCCUUGGGUGCCCGUGACCCCGAUUCAAAUUCGGGCGGUCCCA,AE005105.1/2061-2133,2061-2133,0,72,AE005105.1/2061-2133
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1414,AE005119.1,1,sp|AE005119.1|AE005119 Halobacterium sp. NRC-1 section 150 of 170 of the complete genome.,1,140,4428,4356,50.49,AGUCCCGUAGGGUAGUGGCCAAUCCUGAAGCCUUCUGGGGGCUUCGACGGAAGUUCGAAUCUUCCCGGGACUA,AE005119.1/4428-4356,4428-4356,0,72,AE005119.1/4428-4356
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1420,AE005125.1,1,sp|AE005125.1|AE005125 Halobacterium sp. NRC-1 section 156 of 170 of the complete genome.,1,141,352,278,73.82,GGGCGCGUAGCUCAGUCCGGACAGAGCGUUCGGCUUCUAACCGAAAUGUCGGGGGUUCGAAUCCCCUCGUGCCCG,AE005125.1/352-278,352-278,0,74,AE005125.1/352-278
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1423,AE005128.1,1,sp|AE005128.1|AE005128 Halobacterium sp. NRC-1 section 159 of 170 of the complete genome.,0,142,2987,3058,79.40,GGGCCCAUAGCUCAGUGGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGGGUCCA,AB003409.1/96-167 AE005128.1/2987-3058 K02971.1/2517-2588 X03407.1/2488-2559,2987-3058 6659-6734 8040-7967,0,71,AE005128.1/2987-3058
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1423,AE005128.1,1,sp|AE005128.1|AE005128 Halobacterium sp. NRC-1 section 159 of 170 of the complete genome.,0,143,6659,6734,69.09,GCCAAGGUGGCAGAGUUCGGCCUAACGCGGCGGCCUGCAGAGCCGCUCAUCGCCGGUUCAAAUCCGGCCCUUGGCU,AE005128.1/6659-6734 K02972.1/394-469,2987-3058 6659-6734 8040-7967,0,75,AE005128.1/6659-6734
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1423,AE005128.1,1,sp|AE005128.1|AE005128 Halobacterium sp. NRC-1 section 159 of 170 of the complete genome.,1,144,8040,7967,85.16,GGGCCGAUAGCUCAGCCCGGCAGAGCGUCUGGCUUUUAACCAGACGGUCGAGGGUUCAAAUCCCUCUCGGCCCG,AE005128.1/8040-7967,2987-3058 6659-6734 8040-7967,0,73,AE005128.1/8040-7967
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1426,AE005131.1,1,sp|AE005131.1|AE005131 Halobacterium sp. NRC-1 section 162 of 170 of the complete genome.,0,145,2413,2485,70.66,GGGCGCGUAGCUCAGCGGACAGAGCACUUGGUUCCGGACCAAGAUGUCAGGGGUUCAAAUCCCUUCGCGCCCG,AE005131.1/2413-2485,2413-2485,0,72,AE005131.1/2413-2485
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1427,AE005132.1,1,sp|AE005132.1|AE005132 Halobacterium sp. NRC-1 section 163 of 170 of the complete genome.,0,146,183,254,76.68,GGGCUCGUAGAUCAGCGGUAGAUCGCUUCCUUCGCAAGGAAGAGGCCCUGGGUUCAAAUCCCAGCGAGUCCA,AE005132.1/183-254 AE005137.1/2843-2772 D32120.1/1799-1870,183-254,0,71,AE005132.1/183-254
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1432,AE005137.1,1,sp|AE005137.1|AE005137 Halobacterium sp. NRC-1 section 168 of 170 of the complete genome.,1,147,2843,2772,76.68,GGGCUCGUAGAUCAGCGGUAGAUCGCUUCCUUCGCAAGGAAGAGGCCCUGGGUUCAAAUCCCAGCGAGUCCA,AE005132.1/183-254 AE005137.1/2843-2772 D32120.1/1799-1870,2843-2772,0,71,AE005137.1/2843-2772
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1434,AE005139.1,1,sp|AE005139.1|AE005139 Halobacterium sp. NRC-1 section 170 of 170 of the complete genome.,0,148,121,193,67.24,GCCCGGAUGGUGUAGUGGCCCAUCAUACAACCCUGUCACGGUUGUGACGCGGGUUCAAAUCCCGCUCCGGGCG,AE005139.1/121-193 X57144.1/1243-1171,121-193,0,72,AE005139.1/121-193
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1471,AE006646.1,1,sp|AE006646.1|AE006646 Sulfolobus solfataricus section 5 of 272 of the complete genome.,0,149,7111,7186,85.70,GGGGCCGUAGUCUAGCCUGGACUAGGACGCCAGGCUUGGGCCCUGGUGAUCGCGGGUUCAAAUCCCGCCGGCCCCA,AE006646.1/7111-7186 Y08257.1/51942-51867,7111-7186 7716-7802,0,75,AE006646.1/7111-7186
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1471,AE006646.1,1,sp|AE006646.1|AE006646 Sulfolobus solfataricus section 5 of 272 of the complete genome.,0,150,7716,7802,66.43,GCCGGAGUAGCUCAGUUGGCAGAGCGCCCGGCUGUUAUGCCGGGUGCAGAAACCGGGUGGUCGGAGGUUCGAGUCCUCCCUCCGGCG,AE006646.1/7716-7802 Y08257.1/51337-51251,7111-7186 7716-7802,0,86,AE006646.1/7716-7802
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1472,AE006647.1,1,sp|AE006647.1|AE006647 Sulfolobus solfataricus section 6 of 272 of the complete genome.,1,151,274,190,72.61,GCCGAGGUCGCCUAGCCAGGUAGGGCGGCGGCCUGCUAAGCCGCUGGGGAUCCUCCCCACGCGGGUUCAAAUCCCGCCCUCGGCG,AE006647.1/274-190 Y08257.1/50849-50933,274-190,0,84,AE006647.1/274-190
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1473,AE006648.1,1,sp|AE006648.1|AE006648 Sulfolobus solfataricus section 7 of 272 of the complete genome.,1,152,11687,11549,73.67,GGGCCCGUAGCUUAGCCAGGUAGAGUACUGGGCUCCAGAUAUUAAUGCUAGACAUUGGGUCUUAAGACCCUUUAUGGGGAUGAAGUGUAUCUGGAGAGGAGAGACCCAGUGGUCGCGGGUUCGAGUCCCGCCGGGCCCA,AE006648.1/11687-11549 Y08257.1/27812-27950,11687-11549,0,138,AE006648.1/11687-11549
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1477,AE006652.1,1,sp|AE006652.1|AE006652 Sulfolobus solfataricus section 11 of 272 of the complete genome.,0,153,6621,6695,79.41,GGGCCCGUCGUCUAGCUUGGUUAGGACGUCGCCCUCACACGGCGAAGAUCCUGGGUUCAAGUCCCAGCGGGCCCA,AE006652.1/6621-6695,6621-6695,0,74,AE006652.1/6621-6695
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1478,AE006653.1,1,sp|AE006653.1|AE006653 Sulfolobus solfataricus section 12 of 272 of the complete genome.,1,154,4342,4246,81.12,GGGCCCGUAGCUCAGCCAGGUAGAGCGGCGGGCUUUUAACCGCAAAGGGUUGCGGAAAGCAACCCGUAGGUCCCGGGUUCGAAUCCCGGCGGGCCCG,AE006653.1/4342-4246,4342-4246,0,96,AE006653.1/4342-4246
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1480,AE006655.1,1,sp|AE006655.1|AE006655 Sulfolobus solfataricus section 14 of 272 of the complete genome.,1,155,4394,4281,36.09,GCCGGGGUGGCCGAGUGGUCUAAGGCGGCACUACCAGCCCAUCGGUAGCGCUAGGGGCCGCAGUGGUACUAGUUGACACCCGUUAUUUCGCGGGUUCGAAUCCCGCCCCCGGCU,AE006655.1/4394-4281,4394-4281 269-175,0,113,AE006655.1/4394-4281
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1480,AE006655.1,1,sp|AE006655.1|AE006655 Sulfolobus solfataricus section 14 of 272 of the complete genome.,1,156,269,175,79.02,GGGCCCGUAGCUUAGCCAGGUAGAGCGACGGGCUCUUAACCAUGUAAGAAAAGCGGAGAUACCCGUAGUCCCGGGUUCGAAUCCCGGCGGGCCCG,AE006655.1/269-175,4394-4281 269-175,0,94,AE006655.1/269-175
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1483,AE006658.1,1,sp|AE006658.1|AE006658 Sulfolobus solfataricus section 17 of 272 of the complete genome.,1,157,9282,9199,72.12,GCCGGGGUGCCCGAGCGGACUAAGGGGCUGGCCUGGAGAGCCAGUGGGGGUUUCCCCGCGCGGGUUCAAAUCCCGCCCCCGGCG,AE006658.1/9282-9199,9282-9199 8935-8833 8739-8667 3608-3535,0,83,AE006658.1/9282-9199
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1483,AE006658.1,1,sp|AE006658.1|AE006658 Sulfolobus solfataricus section 17 of 272 of the complete genome.,1,158,8739,8667,78.66,GCCGCGGUAGUCUAGUGGUCUAGGAUGGGGGCCUGUCGAGCCCCUGACCCGGGUUCAAAUCCCGGCCGCGGCG,AE006658.1/8739-8667,9282-9199 8935-8833 8739-8667 3608-3535,0,72,AE006658.1/8739-8667
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1483,AE006658.1,1,sp|AE006658.1|AE006658 Sulfolobus solfataricus section 17 of 272 of the complete genome.,1,159,8935,8833,73.41,AGCGGGGUGGGCUAGCCUGGUAAGGCCGCGGGGCUCAUAUACUCUUUAAAGCACGCGUUGGGAAACCCCGAGGUCCCUGGUUCAAAUCCAGGCCCCGCUACCA,AE006658.1/8935-8833,9282-9199 8935-8833 8739-8667 3608-3535,0,102,AE006658.1/8935-8833
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1483,AE006658.1,1,sp|AE006658.1|AE006658 Sulfolobus solfataricus section 17 of 272 of the complete genome.,1,160,3608,3535,84.72,GCUCGGGUAGCUCAGCCUGGAAGAGCGCCGGGCUGUGGACCCGGAAGUCCCGGGUUCAAAUCCCGGCCCGAGCC,AE006658.1/3608-3535,9282-9199 8935-8833 8739-8667 3608-3535,0,73,AE006658.1/3608-3535
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1485,AE006660.1,1,sp|AE006660.1|AE006660 Sulfolobus solfataricus section 19 of 272 of the complete genome.,1,161,9437,9350,85.82,GCCGCCGUAGCUCAGCCUGGUUAGAGCGCCGGCCUCGUACCCAAAGUGAGAUAGCCGGCGGUCGCGGGUUCGAAUCCCGCCGGCGGCU,AE006660.1/9437-9350,9437-9350,0,87,AE006660.1/9437-9350
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1487,AE006662.1,1,sp|AE006662.1|AE006662 Sulfolobus solfataricus section 21 of 272 of the complete genome.,0,162,2618,2691,87.87,GGGCCGGUAGCUCAGCCUGGAAGAGUGCUCGGUUUGCACCCGAGAGGUCCCGGGUUCAAAUCCCGGCCGGUCCA,AE006662.1/2618-2691,2618-2691 7462-7388,0,73,AE006662.1/2618-2691
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1487,AE006662.1,1,sp|AE006662.1|AE006662 Sulfolobus solfataricus section 21 of 272 of the complete genome.,1,163,7462,7388,84.21,GGGCCCGUCGUCUAGCCUGGUUAGGACGUCGCCCUGACACGGCGGAGGUCCUGGGUUCAAAUCCCAGCGGGCCCA,AE006662.1/7462-7388,2618-2691 7462-7388,0,74,AE006662.1/7462-7388
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1489,AE006664.1,1,sp|AE006664.1|AE006664 Sulfolobus solfataricus section 23 of 272 of the complete genome.,0,164,3894,3968,79.29,GGACCCGUAGCUCAGCCAGGAUGGAGCGCCGGCCUCCGGAGCCAGAGGUCCCGGGUUCAAAUCCCGGCGGGUCCG,AE006664.1/3894-3968,3894-3968 6049-5960,0,74,AE006664.1/3894-3968
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1489,AE006664.1,1,sp|AE006664.1|AE006664 Sulfolobus solfataricus section 23 of 272 of the complete genome.,1,165,6049,5960,78.22,GGACCCGUAGCUCAGCCAGGACGGAGCGCCGGCCUUCUAGCGUCUAAGGAGGAUAGCCGGCGGUCCCGGGUUCAAAUCCCGGCGGGUCCG,AE006664.1/6049-5960,3894-3968 6049-5960,0,89,AE006664.1/6049-5960
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1493,AE006668.1,1,sp|AE006668.1|AE006668 Sulfolobus solfataricus section 27 of 272 of the complete genome.,1,166,5306,5219,76.78,GGACCCGUAGCUCAGCCAGGAUGGAGCGCCGGCCUCCUAACUUUCGGAAGAAAGCCGGUGGUCGCGGGUUCGAAUCCCGCCGGGUCCG,AE006668.1/5306-5219,5306-5219,0,87,AE006668.1/5306-5219
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1496,AE006671.1,1,sp|AE006671.1|AE006671 Sulfolobus solfataricus section 30 of 272 of the complete genome.,0,167,9388,9463,73.26,GGGUCCGUGGUCUAGCCUGGACUAGGAUGCGACGUUCGGGUCGUCGUGGUCCCGGGUUCAAAUCCCGGCGGACCCA,AE006671.1/9388-9463,9388-9463 11111-11184,0,75,AE006671.1/9388-9463
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1496,AE006671.1,1,sp|AE006671.1|AE006671 Sulfolobus solfataricus section 30 of 272 of the complete genome.,0,168,11111,11184,85.07,GGGCCGGUAGCUCAGCCUGGAAGAGUGCUCGGUUGGCAUCCGAGAGGUCCCGGGUUCAAAUCCCGGCCGGUCCA,AE006671.1/11111-11184 AP000982.1/60746-60819,9388-9463 11111-11184,0,73,AE006671.1/11111-11184
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1497,AE006672.1,1,sp|AE006672.1|AE006672 Sulfolobus solfataricus section 31 of 272 of the complete genome.,0,169,5328,5403,87.49,GCGGCCGUAGUCUAGGCUGGAUUAGGACGCCGGCCUUCCAAGCCGGUGAUCCCGGGUUCAAAUCCCGGCGGCCGCA,AE006672.1/5328-5403,5328-5403,0,75,AE006672.1/5328-5403
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1498,AE006673.1,1,sp|AE006673.1|AE006673 Sulfolobus solfataricus section 32 of 272 of the complete genome.,1,170,430,346,71.96,GCCGGGGUGCCCGAGUGGUCCAAGGGGCUGGCCUUGAGAGCCAGUAGGUGUCUAGCCUGCGCGGGUUCAAAUCCCGCCCCCGGCG,AE006673.1/430-346,430-346,0,84,AE006673.1/430-346
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1502,AE006677.1,1,sp|AE006677.1|AE006677 Sulfolobus solfataricus section 36 of 272 of the complete genome.,0,171,1462,1534,64.85,AGCCGGGUAGUCUAGUGGUCAAGGAUCCAGGGCUUUGGCCCCUGGGACCAGGGUUCGAAUCCCUGCCCGGCUA,AE006677.1/1462-1534,1462-1534 1776-1851,0,72,AE006677.1/1462-1534
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1502,AE006677.1,1,sp|AE006677.1|AE006677 Sulfolobus solfataricus section 36 of 272 of the complete genome.,0,172,1776,1851,87.05,GCGGCCGUAGUCUAGCCUGGAUUAGGACGCCUGCCUGCCACGCAGGAGGUCCCGGGUUCAAAUCCCGGCGGCCGCA,AE006677.1/1776-1851,1462-1534 1776-1851,0,75,AE006677.1/1776-1851
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1508,AE006683.1,1,sp|AE006683.1|AE006683 Sulfolobus solfataricus section 42 of 272 of the complete genome.,1,173,3517,3428,66.86,GCCGCGGUGGUUUAGCCCGGUCAAGCGCAGGCACCGAAAGAAUGCGGGCCUUUCGAGCCCGUGACCCGGGUUCAAAUCCCGGCCGCGGCA,AE006683.1/3517-3428 Y18930.1/272979-273068,3517-3428,0,89,AE006683.1/3517-3428
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1509,AE006684.1,1,sp|AE006684.1|AE006684 Sulfolobus solfataricus section 43 of 272 of the complete genome.,0,174,1481,1572,84.56,GCCGCCGUAGCUCAGCCUGGUUAGAGCGCCGGACUCAUACGCGUAAUAUCCGGGAAAUCCGGUUGUCCGGGGUUCAAAUCCCCGCGGCGGCA,AE006684.1/1481-1572 Y18930.1/260076-259985,1481-1572,0,91,AE006684.1/1481-1572
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1510,AE006685.1,1,sp|AE006685.1|AE006685 Sulfolobus solfataricus section 44 of 272 of the complete genome.,1,175,9437,9363,81.90,GGACCCGUAGCUCAGCCAGGACGGAGCGCCGGCCUGCGGAGCCGGAGGUCCCGGGUUCAAGUCCCGGCGGGUCCG,AE006685.1/9437-9363 Y18930.1/240418-240492,9437-9363,0,74,AE006685.1/9437-9363
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1520,AE006695.1,1,sp|AE006695.1|AE006695 Sulfolobus solfataricus section 54 of 272 of the complete genome.,1,176,8592,8517,86.93,GCGGCCGUAGUCUAGGCUGGAUUAGGACGCCGGCCUCCCAAGCCGGUGAUCCCGGGUUCAAAUCCCGGCGGCCGCA,AE006695.1/8592-8517 Y18930.1/136009-136084,8592-8517,0,75,AE006695.1/8592-8517
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1521,AE006696.1,1,sp|AE006696.1|AE006696 Sulfolobus solfataricus section 55 of 272 of the complete genome.,1,177,291,218,84.13,GCCGCCGUAGCUCAGCCCGGGAGAGCGCCCGGCUGAAGACCGGGUUGUCCGGGGUUCAAGUCCCCGCGGCGGCA,AE006696.1/291-218 Y18930.1/130843-130916,291-218,0,73,AE006696.1/291-218
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1524,AE006699.1,1,sp|AE006699.1|AE006699 Sulfolobus solfataricus section 58 of 272 of the complete genome.,0,178,76,175,66.73,GCGGGGGUGCCCGAGCCUGGUCAAAGGGGGCGGACUUAAGACCCCCAAGUAAGAGAUCCGCUGGCGAAGGCCUGCACGGGUUCAAAUCCCGUCCCCCGCA,AE006699.1/76-175 Y18930.1/89137-89038,76-175 1947-2031 3409-3482 9735-9809 5464-5376 3950-3843,0,99,AE006699.1/76-175
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1524,AE006699.1,1,sp|AE006699.1|AE006699 Sulfolobus solfataricus section 58 of 272 of the complete genome.,0,179,1947,2031,64.20,GCGGGGGUGCCCGAGCUAGGUCGAAGGGGGUAGGCUCAGGCCCUACUGGUGAAGGCCUUCGCGGGUUCAAAUCCCGCCCCCCGCA,AE006699.1/1947-2031 Y18930.1/87266-87182,76-175 1947-2031 3409-3482 9735-9809 5464-5376 3950-3843,0,84,AE006699.1/1947-2031
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1524,AE006699.1,1,sp|AE006699.1|AE006699 Sulfolobus solfataricus section 58 of 272 of the complete genome.,0,180,3409,3482,86.71,GGGCCCGUAGCUUAGCUCGGUAGAGCGCUCGGCUCAUAACCGAGUGGUCAGGGGUUCAAAUCCCCUCGGGCCCA,AE006699.1/3409-3482 Y18930.1/85804-85731,76-175 1947-2031 3409-3482 9735-9809 5464-5376 3950-3843,0,73,AE006699.1/3409-3482
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1524,AE006699.1,1,sp|AE006699.1|AE006699 Sulfolobus solfataricus section 58 of 272 of the complete genome.,0,181,9735,9809,88.15,GGGCCCGUCGUCUAGCCUGGUUAGGACGCUGCCCUUACGAGGCAGAGGUCCUGGGUUCAAAUCCCAGCGGGCCCA,AE006699.1/9735-9809 Y18930.1/79478-79404,76-175 1947-2031 3409-3482 9735-9809 5464-5376 3950-3843,0,74,AE006699.1/9735-9809
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1524,AE006699.1,1,sp|AE006699.1|AE006699 Sulfolobus solfataricus section 58 of 272 of the complete genome.,1,182,5464,5376,75.08,CCCGCCGUAGCUCAGCCCGGUUUAGAGCGCCCGGCUGUAGAUAGGGGACAGUAACCGGGUGGUCCGGGGUUCAAGUCCCCGCGGCGGGA,AE006699.1/5464-5376 Y18930.1/83749-83837,76-175 1947-2031 3409-3482 9735-9809 5464-5376 3950-3843,0,88,AE006699.1/5464-5376
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1524,AE006699.1,1,sp|AE006699.1|AE006699 Sulfolobus solfataricus section 58 of 272 of the complete genome.,1,183,3950,3843,50.77,GCCGGGGUGCCCGAGCGGUCAAGGGGGUAGGCUCGAGACCUUUCCAGCGUUACUGCGAGGGACCUACUGCCUCUCUGAGGCACACGGGUUCGAAUCCCGUCCCCGGCG,AE006699.1/3950-3843 Y18930.1/85263-85370,76-175 1947-2031 3409-3482 9735-9809 5464-5376 3950-3843,0,107,AE006699.1/3950-3843
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1525,AE006700.1,1,sp|AE006700.1|AE006700 Sulfolobus solfataricus section 59 of 272 of the complete genome.,1,184,1089,1000,66.30,GCCGCGGUGGUUUAGCCCGGUCAAGCGCAGGCACCGAAAGAAUGCGGGCCUCUCGAGCCCGUGACCCGGGUUCAAAUCCCGGCCGCGGCA,AE006700.1/1089-1000 Y18930.1/77988-78077,1089-1000,0,89,AE006700.1/1089-1000
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1526,AE006701.1,1,sp|AE006701.1|AE006701 Sulfolobus solfataricus section 60 of 272 of the complete genome.,0,185,4391,4475,66.71,GCGGGGGUGCCCGAGCUAGGUCAAAGGGGGCAGGCUUAGGCCCUGCUGGCGAAGGCCUGCACGGGUUCAAAUCCCGUCCCCCGCA,AE006701.1/4391-4475 Y18930.1/61431-61347,4391-4475,0,84,AE006701.1/4391-4475
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1532,AE006707.1,1,sp|AE006707.1|AE006707 Sulfolobus solfataricus section 66 of 272 of the complete genome.,1,186,7408,7334,83.35,GGACCCGUAGCUCAGCUAGGAUGGAGCGCCGGCCUUCGGAGCCGGUGGUCCCGGGUUCAAAUCCCGGCGGGUCCG,AE006707.1/7408-7334,7408-7334,0,74,AE006707.1/7408-7334
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1538,AE006713.1,1,sp|AE006713.1|AE006713 Sulfolobus solfataricus section 72 of 272 of the complete genome.,0,187,3157,3229,64.29,AGCCGGGUAGUCUAGUGGUCAAGGAUCCAGGGCUCUGGCCCCUGGGACCAGGGUUCGAAUCCCUGCCCGGCUA,AE006713.1/3157-3229,3157-3229 2986-2897,0,72,AE006713.1/3157-3229
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1538,AE006713.1,1,sp|AE006713.1|AE006713 Sulfolobus solfataricus section 72 of 272 of the complete genome.,1,188,2986,2897,85.95,GCCGCCGUAGCUCAGCCUGGUUAGAGCGCCGGCCUUGUAAGUUACUGCCUAGAUAGCCGGCGGUCGCGGGUUCGAAUCCCGCCGGCGGCU,AE006713.1/2986-2897,3157-3229 2986-2897,0,89,AE006713.1/2986-2897
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1542,AE006717.1,1,sp|AE006717.1|AE006717 Sulfolobus solfataricus section 76 of 272 of the complete genome.,0,189,7554,7653,64.53,GCGGGGGUGCCCGAGCUGGUCAAAGGGGGCGGACUCAAGACCCCUUAAGUGAGAGAUCCGCUGGCGAAGGCCUUCGCGGGUUCAAAUCCCGUCCCCCGCA,AE006717.1/7554-7653,7554-7653,0,99,AE006717.1/7554-7653
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1548,AE006723.1,1,sp|AE006723.1|AE006723 Sulfolobus solfataricus section 82 of 272 of the complete genome.,1,190,518,422,72.08,GGGGCCGUAGUCUAGCUUGGACUAGGAUGCCAGCCUGGGGAUACUACCCUAACCACCAGAACGCUGGUGGUCCCGGGUUCAAAUCCCGGCGGCCCCA,AE006723.1/518-422,518-422,0,96,AE006723.1/518-422
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1549,AE006724.1,1,sp|AE006724.1|AE006724 Sulfolobus solfataricus section 83 of 272 of the complete genome.,0,191,4063,4136,87.31,GGGCCGGUAGCUCAGCCUGGAAGAGUGCUCGGUUCGCACCCGAGAGGUCCCGGGUUCAAAUCCCGGCCGGUCCA,AE006724.1/4063-4136,4063-4136 2130-2045,0,73,AE006724.1/4063-4136
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1549,AE006724.1,1,sp|AE006724.1|AE006724 Sulfolobus solfataricus section 83 of 272 of the complete genome.,1,192,2130,2045,79.85,GGGCCCGUAGCUUAGCUUGGUGGAGCGCCCGGCUGAUAGGGUGCUCAGAAACCGGGAGGUCACGGGUUCAAAUCCCGUCGGGCCCA,AE006724.1/2130-2045,4063-4136 2130-2045,0,85,AE006724.1/2130-2045
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1661,AE006836.1,1,sp|AE006836.1|AE006836 Sulfolobus solfataricus section 195 of 272 of the complete genome.,1,193,316,232,67.68,GCGGGGGUGCCCGAGCUAGGGCAAAGGGGGCGGACUGAGGCUCCGCUGGCGAAGGCCUGCACGGGUUCAAAUCCCGUCCCCCGCA,AE006836.1/316-232,316-232,0,84,AE006836.1/316-232
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1697,AE006872.1,1,sp|AE006872.1|AE006872 Sulfolobus solfataricus section 231 of 272 of the complete genome.,0,194,2100,2174,92.49,GCCGCGGUAGCUCAGCCUGGCCAGAGCGCUGCCCUGGUAAGGCAGAGGUCCCGGGUUCAAAUCCCGGCCGCGGCU,AE006872.1/2100-2174,2100-2174,0,74,AE006872.1/2100-2174
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1740,AE009747.1,1,sp|AE009747.1|AE009747 Pyrobaculum aerophilum strain IM2 section 2 of 201 of the complete genome.,1,195,9396,9305,57.53,GCCGCCGUAGUCUAGCGGUUAGGAUGGCGGGUUGUGGUCCCGUUGCGGCGAGCCGCGGGAGGACCCGGGUUCAAAUCCCGGCGGCGGCCCCA,AE009747.1/9396-9305,9396-9305,0,91,AE009747.1/9396-9305
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1766,AE009773.1,1,sp|AE009773.1|AE009773 Pyrobaculum aerophilum strain IM2 section 28 of 201 of the complete genome.,1,196,7700,7626,84.64,GGGCCGGUAGUCUAGCGGAAGGAUGCCCGCCUCGCGCGCGGGAGAUCCCGGGUUCGAAUCCCGGCCGGUCCACCA,AE009773.1/7700-7626,7700-7626,0,74,AE009773.1/7700-7626
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1767,AE009774.1,1,sp|AE009774.1|AE009774 Pyrobaculum aerophilum strain IM2 section 29 of 201 of the complete genome.,0,197,10771,10844,81.91,GGGGCCGUAGUCUAGCCUGGUAGGAUGCGCGGUUCGGGUCCGCGUGAUCCCGGGUUCAAAUCCCGGCGGCCCCA,AE009774.1/10771-10844,10771-10844,0,73,AE009774.1/10771-10844
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1773,AE009780.1,1,sp|AE009780.1|AE009780 Pyrobaculum aerophilum strain IM2 section 35 of 201 of the complete genome.,1,198,5111,5027,73.28,GCCGGGGUGGCCGAGCGGCCCAAGGCGCGGGACUCGAGAUCCCGUCCCCGUCCAGGGGGCGUGGGUUCAAAUCCCACCCCCGGCG,AE009780.1/5111-5027,5111-5027,0,84,AE009780.1/5111-5027
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1782,AE009789.1,1,sp|AE009789.1|AE009789 Pyrobaculum aerophilum strain IM2 section 44 of 201 of the complete genome.,1,199,9217,9124,53.20,GGGCCCGUAGCUCAGCCUGGAUGGAGCGGCGGCCUGCGGAGCCGUAGGUCGUGGGUUCAGGCAAUGCCGCCCAGAAAUCCCACCGGGCCCGCCA,****    NEW  HIT  #2  ****,,2,0,AE009789.1/9217-9124
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1783,AE009790.1,1,sp|AE009790.1|AE009790 Pyrobaculum aerophilum strain IM2 section 45 of 201 of the complete genome.,0,200,553,651,38.72,CAACCGGUAGUCUAGCCCGGACAAGGAUGUGGGCCUUUCGAGCCCAUGACCCGGGUUCAAAGGCGGAGAUCCGCCGUAUACAUCCCGGCCGGGGCACCA,****    NEW  HIT  #3  ****,,2,0,AE009790.1/553-651
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1798,AE009805.1,1,sp|AE009805.1|AE009805 Pyrobaculum aerophilum strain IM2 section 60 of 201 of the complete genome.,0,201,4117,4210,61.46,GGGCCCGUAGCUUAGCCAGGUAGAGCGCCCUGGGGCCCAGCCCCGCGCAAGGCUCAUAACCGGGCGGUCCCGGGUUCAAAUCCCGGCGGGCCCA,AE009805.1/4117-4210,4117-4210,0,93,AE009805.1/4117-4210
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1813,AE009820.1,1,sp|AE009820.1|AE009820 Pyrobaculum aerophilum strain IM2 section 75 of 201 of the complete genome.,1,202,9809,9732,86.73,GGGCCCGUAGCUCAGCCUGGAUAGAGCGGCGGCCUUCUAAGCCGUAGGUCGUGGGUUCAAAUCCCAUCGGGCCCGCCA,AE009820.1/9809-9732,9809-9732 5190-5075,0,77,AE009820.1/9809-9732
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1813,AE009820.1,1,sp|AE009820.1|AE009820 Pyrobaculum aerophilum strain IM2 section 75 of 201 of the complete genome.,1,203,5190,5075,59.55,CGGGCCGUAGCUCAGCGGUCGAGAGCGCCCGGCUGUAGACAGCCCCCUGGGGGACAUUCCCCUAAACCCCCAGGGCCUGUAACGGGCGGUCCCGGGUUCGAAUCCCGGCGGCCCGA,AE009820.1/5190-5075,9809-9732 5190-5075,0,115,AE009820.1/5190-5075
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1817,AE009824.1,1,sp|AE009824.1|AE009824 Pyrobaculum aerophilum strain IM2 section 79 of 201 of the complete genome.,1,204,9886,9799,78.84,GCGGGGGUGCCCGAGCCAGGCCAAAGGGGCAGGGCUCAAGACCCUGUGGCGUAGGCCUGCGUGGGUUCAAAUCCCACCCCCCGCACCA,AE009824.1/9886-9799,9886-9799,0,87,AE009824.1/9886-9799
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1819,AE009826.1,1,sp|AE009826.1|AE009826 Pyrobaculum aerophilum strain IM2 section 81 of 201 of the complete genome.,1,205,228,154,69.92,CAGCCGGUAGUCUAGCCCGGACAAGGAUGCGGGCCUCUCGAGCCCGUGACCCGGGUUCAAAUCCCGGCCGGGGCA,AE009826.1/228-154,228-154,0,74,AE009826.1/228-154
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1830,AE009837.1,1,sp|AE009837.1|AE009837 Pyrobaculum aerophilum strain IM2 section 92 of 201 of the complete genome.,1,206,7329,7242,75.45,GCCGGGGUGGCCGAGCGGCCCAAGGCGCGGGACUUGAGAUCCCGUCCCCGUCCAGGGGGCGUGGGUUCAAAUCCCACCCCCGGCGCCA,AE009837.1/7329-7242,7329-7242,0,87,AE009837.1/7329-7242
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1833,AE009840.1,1,sp|AE009840.1|AE009840 Pyrobaculum aerophilum strain IM2 section 95 of 201 of the complete genome.,0,207,2524,2595,85.95,GGGCCCGUAGUCUAGCGGUAUGAUGCCCGCCUCACGCGCGGGUGGUCCCGGGUUCAAAUCCCGGCGGGCCCA,AE009840.1/2524-2595,2524-2595,0,71,AE009840.1/2524-2595
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1846,AE009853.1,1,sp|AE009853.1|AE009853 Pyrobaculum aerophilum strain IM2 section 108 of 201 of the complete genome.,1,208,4240,4164,90.15,GGGCCCGUGGCUCAGCCUGGUAGAGCGGCGGCCUUCGGAGCCGUAGGUCGUGGGUUCAAAUCCCACCGGGCCCGCCA,AE009853.1/4240-4164,4240-4164,0,76,AE009853.1/4240-4164
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1848,AE009855.1,1,sp|AE009855.1|AE009855 Pyrobaculum aerophilum strain IM2 section 110 of 201 of the complete genome.,0,209,3683,3770,73.32,GCGGGGGUGCCCGAGCCAGGUCAAAGGGGCAGGGUUCAGGUCCCUGUGGCGUAGGCCUGCGUGGGUUCAAAUCCCACCCCCCGCACCA,AE009855.1/3683-3770,3683-3770 5079-5172,0,87,AE009855.1/3683-3770
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1848,AE009855.1,1,sp|AE009855.1|AE009855 Pyrobaculum aerophilum strain IM2 section 110 of 201 of the complete genome.,0,210,5079,5172,58.60,GCCGCCGUAGCUCAGCCUGGAAGAGCGCUCUGGGGCUAGGCCCCGCGUAGGGCUCAUAACCGGGUUGCCCCGGGUUCAAAUCCCGGCGGCGGCA,AE009855.1/5079-5172,3683-3770 5079-5172,0,93,AE009855.1/5079-5172
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1849,AE009856.1,1,sp|AE009856.1|AE009856 Pyrobaculum aerophilum strain IM2 section 111 of 201 of the complete genome.,1,211,2217,2140,65.52,UAGCCGGUAGUAUAGCCCGGACUAGUAUGCGGGCCUGUCGAGCCCGUGACCCGGGUUCAAAUCCCGGCCGGGGCGCCA,AE009856.1/2217-2140,2217-2140,0,77,AE009856.1/2217-2140
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1850,AE009857.1,1,sp|AE009857.1|AE009857 Pyrobaculum aerophilum strain IM2 section 112 of 201 of the complete genome.,0,212,5182,5299,27.19,GCCCCGGUAGCUCAGCCCGGUCGGAGCGCCCAGGGGCAAAGCCCCGUGUAGGCCUUGUAAGCGGGAGGUCCCGGGUUCGAAGGCGGCUUUGCCGCCGAAACUCCCGGCCGGGGCUCCA,****    NEW  HIT  #4  ****,,2,0,AE009857.1/5182-5299
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1855,AE009862.1,1,sp|AE009862.1|AE009862 Pyrobaculum aerophilum strain IM2 section 117 of 201 of the complete genome.,1,213,8740,8639,55.78,GGGCCCGUAGCUCAGUCAGGAUAGAGCGGCGGUGGACCCAGCCUCGGUCCGCCGAGCCUCCUAAGCCGUAGGUCGUGGGUUCGAAUCCCACCGGGCCCGCCA,AE009862.1/8740-8639,8740-8639,0,101,AE009862.1/8740-8639
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1866,AE009873.1,1,sp|AE009873.1|AE009873 Pyrobaculum aerophilum strain IM2 section 128 of 201 of the complete genome.,0,214,3864,3939,76.69,AGCCCGGUCGUCUAGCGGCCAAGGAUGCGGGGCUUUGGACCCCGUGGCCCGGGUUCGAAUCCCGGCCGGGCUACCA,AE009873.1/3864-3939,3864-3939 7854-7941,0,75,AE009873.1/3864-3939
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1866,AE009873.1,1,sp|AE009873.1|AE009873 Pyrobaculum aerophilum strain IM2 section 128 of 201 of the complete genome.,0,215,7854,7941,73.24,GCGGGGGUGCCCGAGCCAGGUCAAAGGGGCAGGGUUGAGGUCCCUGUGGCGUAGGCCUGCGUGGGUUCAAAUCCCACCCCCCGCACCA,AE009873.1/7854-7941,3864-3939 7854-7941,0,87,AE009873.1/7854-7941
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1867,AE009874.1,1,sp|AE009874.1|AE009874 Pyrobaculum aerophilum strain IM2 section 129 of 201 of the complete genome.,0,216,233,327,76.67,GGGCCGGUAGUCUAGCGGAAGGAUGCCCGCCUUGCAAGGCGUUACAUACCUAAGAGCGCGGGUGAUCCCGGGUUCGAAUCCCGGCCGGUCCACCA,AE009874.1/233-327,70-144 233-327,0,94,AE009874.1/233-327
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1867,AE009874.1,1,sp|AE009874.1|AE009874 Pyrobaculum aerophilum strain IM2 section 129 of 201 of the complete genome.,0,217,70,144,93.11,GGGCCCGUGGCUUAGCCCGGUUAGAGCGCCCGGCUGAUAACCGGGAGGUCCCGGGUUCAAAUCCCGGCGGGCCCA,AE009874.1/70-144,70-144 233-327,0,74,AE009874.1/70-144
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1888,AE009895.1,1,sp|AE009895.1|AE009895 Pyrobaculum aerophilum strain IM2 section 150 of 201 of the complete genome.,0,218,1571,1661,72.17,AGCGGGGUAGGCCAGCCUGGUAGGCCGCGGGGCUCAUAACGGGCGUGCCCGUGGAGCCCCGAGGUCCCCGGUUCAAAUCCGGGCCCCGCUA,AE009895.1/1571-1661,1571-1661,0,90,AE009895.1/1571-1661
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1894,AE009901.1,1,sp|AE009901.1|AE009901 Pyrobaculum aerophilum strain IM2 section 156 of 201 of the complete genome.,0,219,8830,8920,79.39,GCGGCGGUAGUCUAGCCUGGUUUAGGAUGGCGGCCUUCCACGCGGUUGCGAAGAAAGCCGUUGAUCCCGGGUUCAAAUCCCGGCCGCCGCA,AE009901.1/8830-8920,8830-8920 3427-3353,0,90,AE009901.1/8830-8920
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1894,AE009901.1,1,sp|AE009901.1|AE009901 Pyrobaculum aerophilum strain IM2 section 156 of 201 of the complete genome.,1,220,3427,3353,88.79,GCGGCCGUAGCUCAGCGGGAGAGCGCCCGGCUGAAGACCGGGCGGUCCCGGGUUCAAAUCCCGGCGGCCGCACCA,AE009901.1/3427-3353,8830-8920 3427-3353,0,74,AE009901.1/3427-3353
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1899,AE009906.1,1,sp|AE009906.1|AE009906 Pyrobaculum aerophilum strain IM2 section 161 of 201 of the complete genome.,1,221,4655,4544,49.22,GCCCCGGUAGCUCAGCCUGGUGGAGCGCCUCACUGGUAAAAGCCUCCGGGCUACCGGAUGAGGAGGUCCCGGGUUCAGGCAUUGCCGCCUAAGAAUCCCGGCCGGGGCUCCA,****    NEW  HIT  #5  ****,,2,0,AE009906.1/4655-4544
./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec ,data/tRNAscan/tRNAscan-TRNA2-arch.cm (global),/projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz,1900,AE009907.1,1,sp|AE009907.1|AE009907 Pyrobaculum aerophilum strain IM2 section 162 of 201 of the complete genome.,0,222,521,611,79.72,GGGGCCGUAGUCUAGCCUGGCUAGGAUGCCGGCCUGGGGUCGGACCCCGCUAGA