Params: ./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-TRNA2-arch.cm /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz 1 specfile data/TRNA2-arch.filterspec Build: release Host: gattaca.cs.washington.edu pid: 8405 ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----specfile: hmm data/tRNAscan/tRNAscan-TRNA2-arch-type1-Ecoli.bin 2struct-str data/tRNAscan/tRNAscan-TRNA2-arch-type1-Ecoli.bin 1/remember-nuc,19,r-CGU-A_,18,l-ACG-U_,37,r-A-C-G-U-_,57,l-ACGU-_,52,l-ACGU-_,70,r-AGU_-C,69,r-AGU-C-_ 2struct-str data/tRNAscan/tRNAscan-TRNA2-arch-type1-Ecoli.bin 1/remember-nuc,19,r-AU-CG-_,18,l-AG-C-U-_,37,l-GU-A-C-_,35,r-AGU-C_,34,r-ACU-G_,57,l-ACGU-_,54,r-ACGU-_,53,l-ACGU-_,52,l-ACGU-_,70,r-AGU_-C,69,r-AGU_-C,68,r-AGU-C-_ 2struct-str data/tRNAscan/tRNAscan-TRNA2-arch-type1-Ecoli.bin 1/remember-nuc,19,r-AU-CG-_,18,l-AG-C-U-_,17,l-AG-C-U-_,37,l-GU-A-C-_,36,l-ACU-G-_,35,r-AGU-C_,34,r-ACU-G_,57,l-ACGU-_,54,r-ACGU-_,53,l-ACGU-_,52,l-ACGU-_,51,l-ACGU-_,70,r-AGU-C-_,69,r-AGU-C-_,68,r-AGU-C-_,67,r-ACU-G_ 2struct-str data/tRNAscan/tRNAscan-TRNA2-arch-type1-Ecoli.bin 1/sub,16,87/sub,66,45/sub,51,24 2struct-str data/tRNAscan/tRNAscan-TRNA2-arch-type1-Ecoli.bin 1/sub,33,250/sub,16,87/sub,66,45/sub,51,24 ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-arch.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu Exploded HMM has 987 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-arch.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,19,r-CGU-A_/remember-nuc,18,l-ACG-U_/remember-nuc,37,r-A-C-G-U-_/remember-nuc,57,l-ACGU-_/remember-nuc,52,l-ACGU-_/remember-nuc,70,r-AGU_-C/remember-nuc,69,r-AGU-C-_ Exploded HMM has 2516 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-arch.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,19,r-AU-CG-_/remember-nuc,18,l-AG-C-U-_/remember-nuc,37,l-GU-A-C-_/remember-nuc,35,r-AGU-C_/remember-nuc,34,r-ACU-G_/remember-nuc,57,l-ACGU-_/remember-nuc,54,r-ACGU-_/remember-nuc,53,l-ACGU-_/remember-nuc,52,l-ACGU-_/remember-nuc,70,r-AGU_-C/remember-nuc,69,r-AGU_-C/remember-nuc,68,r-AGU-C-_ Exploded HMM has 7690 states ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-arch.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,19,r-AU-CG-_/remember-nuc,18,l-AG-C-U-_/remember-nuc,17,l-AG-C-U-_/remember-nuc,37,l-GU-A-C-_/remember-nuc,36,l-ACU-G-_/remember-nuc,35,r-AGU-C_/remember-nuc,34,r-ACU-G_/remember-nuc,57,l-ACGU-_/remember-nuc,54,r-ACGU-_/remember-nuc,53,l-ACGU-_/remember-nuc,52,l-ACGU-_/remember-nuc,51,l-ACGU-_/remember-nuc,70,r-AGU-C-_/remember-nuc,69,r-AGU-C-_/remember-nuc,68,r-AGU-C-_/remember-nuc,67,r-ACU-G_ ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-arch.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,16,87/sub,66,45/sub,51,24 ----hmm-from-cmFileName: data/tRNAscan/tRNAscan-TRNA2-arch.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-insert-hack --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf data/tRNAscan/tRNAscan-TRNA2-arch.cm 1 1 100000 1 cfsqp 0 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,33,250/sub,16,87/sub,66,45/sub,51,24 ----cmFile: data/tRNAscan/tRNAscan-TRNA2-arch.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #12,sp|Y08729.1|AADOXP84B A.ambivalens doxB gene locus with doxB, doxC, doxE, and doxF genes ----isReversed: 0 ----hitSequence: GCCGGGGUCGCCUAGCUCGGUUAGGGCGGCUGCUAAGCCGUUGGGGGAAACCCGCGCGGGUUCAAAUCCCGCUCCCGGCG hit 0 : 697 776 (fwd) 51.44 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GCC::G:U GC::AGC GGU+A::GCG C GC +AAGC G +GGG G A+ 697 GCCGGGGUCGCCUAGCUcGGUuAGGGCGGCUGC----UAAGCCGUUGGGG----GAAA-- 746 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 CCGC:CGGGUUCAAAUCCCG::C::GGC 747 --CCCGCGCGGGUUCAAAUCCCGCUCCCGGCG--- 776 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #30,sp|AB003404.1|AB003404 Halorubrum sodomense DNA, ribosomal spacer region containing tRNA-Ala. ----isReversed: 0 ----hitSequence: GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA hit 1 : 165 236 (fwd) 79.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::C:::UA:CUCAGC GGUAGAG:GCC::CCUUGCAAG::GGA 165 GGGCUCAUAGCUCAGC-GGUAGAGUGCCUCCCUUGCAAGGAGGAU--------------- 208 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:G:::G::CA 209 ---GcCCUGGGUUCGAAUCCCAGUGAGUCCA--- 236 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #31,sp|AB003405.1|AB003405 Halorubrum saccharovorum DNA, ribosomal spacer region containing tRNA-Ala. ----isReversed: 0 ----hitSequence: GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA hit 2 : 162 233 (fwd) 79.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::C:::UA:CUCAGC GGUAGAG:GCC::CCUUGCAAG::GGA 162 GGGCUCAUAGCUCAGC-GGUAGAGUGCCUCCCUUGCAAGGAGGAU--------------- 205 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:G:::G::CA 206 ---GcCCUGGGUUCGAAUCCCAGUGAGUCCA--- 233 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #32,sp|AB003406.1|AB003406 Halorubrum lacusprofundi DNA, ribosomal spacer region containing tRNA-Ala. ----isReversed: 0 ----hitSequence: GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA hit 3 : 158 229 (fwd) 77.61 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::C:::UA:CUCAGC GGUAGAG:GCC::C UUGCAAG::GGA 158 GGGCUCAUAGCUCAGC-GGUAGAGUGCCUCCUUUGCAAGGAGGAU--------------- 201 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:G:::G::CA 202 ---GcCCUGGGUUCGAAUCCCAGUGAGUCCA--- 229 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #33,sp|AB003407.1|AB003407 Halorubrum distributum DNA, ribosomal spacer region containing tRNA-Ala. ----isReversed: 0 ----hitSequence: GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA hit 4 : 161 232 (fwd) 79.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::C:::UA:CUCAGC GGUAGAG:GCC::CCUUGCAAG::GGA 161 GGGCUCAUAGCUCAGC-GGUAGAGUGCCUCCCUUGCAAGGAGGAU--------------- 204 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:G:::G::CA 205 ---GcCCUGGGUUCGAAUCCCAGUGAGUCCA--- 232 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #34,sp|AB003408.1|AB003408 Halorubrum coriense DNA, ribosomal spacer region containing tRNA-Ala. ----isReversed: 0 ----hitSequence: GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA hit 5 : 162 233 (fwd) 79.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::C:::UA:CUCAGC GGUAGAG:GCC::CCUUGCAAG::GGA 162 GGGCUCAUAGCUCAGC-GGUAGAGUGCCUCCCUUGCAAGGAGGAU--------------- 205 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:G:::G::CA 206 ---GcCCUGGGUUCGAAUCCCAGUGAGUCCA--- 233 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #35,sp|AB003409.1|AB003409 Natronobacterium pharaonis DNA, ribosomal spacer region containing tRNA-Ala. ----isReversed: 0 ----hitSequence: GGGCCCAUAGCUCAGUGGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGGGUCCA hit 6 : 96 167 (fwd) 79.40 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::CC::UA:CUCAG+ GGUAGAG:GCC::C UUGCAAG::GGA 96 GGGCCCAUAGCUCAGU-GGUAGAGUGCCUCCUUUGCAAGGAGGAU--------------- 139 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:G::GG::CA 140 ---GcCCUGGGUUCGAAUCCCAGUGGGUCCA--- 167 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #36,sp|AB003410.1|AB003410 Natronobacterium gregoryi DNA, ribosomal spacer region containing tRNA-Ala. ----isReversed: 0 ----hitSequence: GGGCCCAUAGCUCAGUGGGAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGGGUCCA hit 7 : 153 224 (fwd) 77.57 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::CC::UA:CUCAG+ GG AGAG:GCC::C UUGCAAG::GGA 153 GGGCCCAUAGCUCAGU-GGGAGAGUGCCUCCUUUGCAAGGAGGAU--------------- 196 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:G::GG::CA 197 ---GcCCUGGGUUCGAAUCCCAGUGGGUCCA--- 224 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #37,sp|AB003411.1|AB003411 Halorubrum vacuolatum DNA, ribosomal spacer region containing tRNA-Ala. ----isReversed: 0 ----hitSequence: GGGCUCAUAGCUCAGCGGUAGAGUGCCUCCCUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGAGUCCA hit 8 : 168 239 (fwd) 79.44 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::C:::UA:CUCAGC GGUAGAG:GCC::CCUUGCAAG::GGA 168 GGGCUCAUAGCUCAGC-GGUAGAGUGCCUCCCUUGCAAGGAGGAU--------------- 211 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:G:::G::CA 212 ---GcCCUGGGUUCGAAUCCCAGUGAGUCCA--- 239 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #43,sp|AB005747.1|AB005747 Pyrococcus furiosus DNA for tRNA-Glu. ----isReversed: 0 ----hitSequence: GCCCCGGUGGGUAGCCCGGUCAAACAUGCGGGCCUUUCGAGCCCGCGCCCCGGGUUCAAAUCCCGGCCGGGGCACCA hit 9 : 55 131 (fwd) 72.31 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GCCCCGGU : : AGCC GGU+ A : :GC:GGCCUU+C+AGCC:G 55 GCCCCGGU-GGGUAGCCcGGUcaAACAUGCGGGCCUUUCGAGCCCGC------------- 100 >>>>>>,.,<<<<<_______>>>>>))))))):::: 58 agggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCCGGGUUCAAAUCCCGGCCGGGGCACCA 101 ------GcCCCGGGUUCAAAUCCCGGCCGGGGCACCA 131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #45,sp|AB006961.1|AB006961 Halobacterium halobium gene for ribosomal proteins, partial and complete cds. ----isReversed: 1 ----hitSequence: GCGCUGGUAGUGUAGUGGUAUCACGUGACCUUGCCAUGGUCACAACCUGGGUUCAAAUCCCAGCCAGCGCA hit 10 : 377 307 (rev) 62.22 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GC:C:GGUAG:::AG+ GGUA:::CG::::C U+ CA G:::: 6964 GCGCUGGUAGUGUAGU-GGUAUCACGUGACCUUGCCAUGGUCACA--------------- 7007 >>>,,<<<<<_______>>>>>))))))):::: 61 gccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CC:GGGUUCAAAUCCC:GCC:G:GCA 7008 ---ACCUGGGUUCAAAUCCCAGCCAGCGCA--- 7034 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #267,sp|AB030282.1|AB030282 Halobacterium halobium genes for ribosomal proteins and RNA-polymerase D, complete cds. ----isReversed: 0 ----hitSequence: GUCGUGGUAGCCUAGCCUGGUCAAGGCGCAGGGUUGCUAACUCUGUGGCGUAACUCUCCGGGGUUCAAAUCCCCGCCACGACG hit 11 : 334 416 (fwd) 65.44 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G:C::GGUAGC: AGCC+GGU+A :GCGC:G : U+ +AA: C:G+G+ GUA+ 334 GUCGUGGUAGCCUAGCCuGGUcAAGGCGCAGGGUUGCUAACUCUGUGGC-----GUAA-- 386 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 + +CC:GGGUUCAAAUCCC:GCC::G:C 387 ---CUCuCCGGGGUUCAAAUCCCCGCCACGACG--- 416 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #267,sp|AB030282.1|AB030282 Halobacterium halobium genes for ribosomal proteins and RNA-polymerase D, complete cds. ----isReversed: 0 ----hitSequence: GCAGGGAUAGCCAAGUUUGGCCAAAGGGGCACGUUCAGGGCGCUGUCCCGUAGGGUUCGCAGGUUCAAAUCCUGCUCCCUGCA hit 12 : 2735 2817 (fwd) 44.47 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GC:::G:UA C::AG+ +GG++ A::G GC: :: U++ + ::C:G+ ::C GUA 2735 GCAGGGAUAGCCAAGUUuGGCcaAAGGGGCA-CGUUCAGGGCGCUGU-CCC----GUA-- 2786 >>>>>>,.,<<<<<_______>>>>>))))))):::: 58 agggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C:C:GGUUCAAAUCC:G::C:::GCA 2787 ---GGGUuCGCAGGUUCAAAUCCUGCUCCCUGCA--- 2817 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #287,sp|AB033996.1|AB033996 Thermococcus litoralis agt gene for alanine glyoxylate transaminase, complete cds. ----isReversed: 1 ----hitSequence: GCGGGGGUUGCCGAGCCUGGUCAAAGGCGCGGGAUUGAGGGUCCCGUCCCGUAGGGGUUCCGGGGUUCAAAUCCCCGCCCCCGCACCA hit 13 : 1597 1510 (rev) 74.41 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GC:::GGU GC::AGCC+GGU+ A::GCGC:GG: U++ + :CC:G+ ::C GUAG 810 GCGGGGGUUGCCGAGCCuGGUcaAAGGCGCGGGAUUGAGGGUCCCGU-CCC----GUAG- 863 >>>>>>,.,<<<<<_______>>>>>))))))):::: 58 agggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +CC:GGGUUCAAAUCCC:GCC:::GCACCA 864 ---GGGUuCCGGGGUUCAAAUCCCCGCCCCCGCACCA 897 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #660,sp|AB072815.1|AB072815 Halosimplex carlsbadense rrnB operon genes for 16S rRNA, tRNA-Ala, 23S rRNA, complete and partial sequence. ----isReversed: 0 ----hitSequence: GGGCCCAUAGCUCAGCGGCAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGGUUCAAAUCCCAGUGGGUCCA hit 14 : 1566 1637 (fwd) 85.50 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::CC::UAGCUCAGC GG+AGAGCGCCG:C UUGCAAG:CGGAG 1566 GGGCCCAUAGCUCAGC-GGCAGAGCGCCGCCUUUGCAAGGCGGAG--------------- 1609 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUCAAAUCCC:G::GG::CA 1610 ---GcCCUGGGUUCAAAUCCCAGUGGGUCCA--- 1637 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #661,sp|AB072816.1|AB072816 Halosimplex carlsbadense rrnC operon genes for 16S rRNA, tRNA-Ala, 23S rRNA, complete and partial sequence. ----isReversed: 0 ----hitSequence: GGGCCCAUAGCUCAGCGGCAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGGUUCAAAUCCCAGUGGGUCCA hit 15 : 1567 1638 (fwd) 85.50 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::CC::UAGCUCAGC GG+AGAGCGCCG:C UUGCAAG:CGGAG 1567 GGGCCCAUAGCUCAGC-GGCAGAGCGCCGCCUUUGCAAGGCGGAG--------------- 1610 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUCAAAUCCC:G::GG::CA 1611 ---GcCCUGGGUUCAAAUCCCAGUGGGUCCA--- 1638 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #946,sp|AE000796.1|AE000796 Methanobacterium thermoautotrophicum from bases 10151 to 26221 (section 2 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GCCGGGAUAGCCUAGCCAGGUAAGGCGCAAGACUGGAAAUCUUGUGGAGCUUUGCUCCUCCUGGGUUCAAAUCCCAGUCCCGGCG hit 16 : 7323 7407 (fwd) 66.99 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCC::G:UAGC: AGCC GGUA :GCGC::G:CU+G AA:C::G+GG: U G 7323 GCCGGGAUAGCCUAGCCaGGUAAGGCGCAAGACUGGAAAUCUUGUGGAG---CUUUG--- 7376 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 :C +CC:GGGUUCAAAUCCC:G:C::GGC 7377 -CUCCuCCUGGGUUCAAAUCCCAGUCCCGGCG--- 7407 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #946,sp|AE000796.1|AE000796 Methanobacterium thermoautotrophicum from bases 10151 to 26221 (section 2 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GGGACCGUAGGGUAGCUUGGUCCAUCCUCCCAGCCAUUGAAGAAGUUUCCGGACUUUUCAACUGGAACGGGGAUGGUCAGCACCGGAACGCUGGAGACCCGAGUUCAAAUCUCGGCGGUCCCA hit 17 : 11131 11253 (fwd) 52.98 bits (((((((,,<<<<____.___.._>>>>,<<<<<______.................... 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcA.................... 37 G:::C:GUA::::AGC +GGU++A:::: CC:GCC U+ A+++++ +++ + 11131 GGGACCGUAGGGUAGCUuGGUccAUCCUCCCAGCCAUUGAagaaguuuccggacuuuuca 11190 ............................_>>>>>,,<<<<<<<____>>>>>>>,,<<<< 38 ............................AgCCgGaGggcccaaGUAGaagggccgCccGG 69 + ++++ +++++ ++ ++ + ++++ GC:GGAG +CCCG: 11191 acuggaacggggauggucagcaccggaaCGCUGGAG------------------ACCCGA 11232 <_______>>>>>))))))):::: 70 GUUCAAAUCCCggCcggggCACCA 93 GUUCAAAUC:CGGC:G:::CA 11233 GUUCAAAUCUCGGCGGUCCCA--- 11253 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #994,sp|AE000844.1|AE000844 Methanobacterium thermoautotrophicum from bases 559173 to 571236 (section 50 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GCAGGGGUGGUCGAGCGGUCAAAGGCGCUAGGUUGAGGGCCUAGUGGGGGAGUCCCUUCGCGGGUUCGAAUCCCGUCCCCUGCA hit 18 : 8908 8991 (fwd) 58.19 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC:::GGU+G ::AGC GGU+ A:: CGC::G: U++ + :C::G+GGG : 8908 GCAGGGGUGGUCGAGC-GGUcaAAGGCGCUAGGUUGAGGGCCUAGUGGGGGA-------- 8958 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 : CC +C+CGGGUUC+AAUCCCG+CC:::GCA 8959 GUCCCUuCGCGGGUUCGAAUCCCGUCCCCUGCA--- 8991 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1003,sp|AE000853.1|AE000853 Methanobacterium thermoautotrophicum from bases 666487 to 679269 (section 59 of 148) of the complete genome. ----isReversed: 1 ----hitSequence: GCCUCGGUAGCUUAGGUGGGAGAGCGCGGGAUUCGUAAUCCCGAGGUCGCGGGUUCAAUCCCCGCCCGGGGCU hit 19 : 12540 12468 (rev) 68.51 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC:CGGUAGCU:AG GG A:AGCGC:GG: U+G+AA:CC:GAG 244 GCCUCGGUAGCUUAGGUGGGAGAGCGCGGGAUUCGUAAUCCCGAG--------------- 288 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CGGGUUCAA CCCG:CCG:GGC 289 ---GuCGCGGGUUCAAUCCCCGCCCGGGGCU--- 316 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1006,sp|AE000856.1|AE000856 Methanobacterium thermoautotrophicum from bases 702375 to 714311 (section 62 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GGGCUGGUAGCUCAGGUUGGUAGAGCGUCGCCUUGGCAUGGCGGAGGCCCCGGGUUCAAAUCCCGGCCAGUCCA hit 20 : 6431 6504 (fwd) 78.86 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::C:GGUAGCUCAG +GGUAGAGCG:CG:C U+GCA G:CG:AG 6431 GGGCUGGUAGCUCAGGUuGGUAGAGCGUCGCCUUGGCAUGGCGGAG-------------- 6476 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCCGGGUUCAAAUCCCGGCC:G::CA 6477 ----GcCCCGGGUUCAAAUCCCGGCCAGUCCA--- 6504 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1007,sp|AE000857.1|AE000857 Methanobacterium thermoautotrophicum from bases 714254 to 725965 (section 63 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GCGGUUGUAGUCUAGUCUGGUUAGGACUCGGGCCUUCCAAGCCCGCGACCCGGGUUCAAAUCCCGGCAACCGCA hit 21 : 5774 5847 (fwd) 79.89 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC::::GUAG:::AG+C+GGU+A:::C C:GGCCUU CAAGCC:G G 5774 GCGGUUGUAGUCUAGUCuGGUuAGGACUCGGGCCUUCCAAGCCCGCG------------- 5820 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCGGGUUCAAAUCCCGGC::::GCA 5821 -----ACCCGGGUUCAAAUCCCGGCAACCGCA--- 5847 ----endhit ----hitSequence: GCGGCGUUAGUCCAGCCUGGUUAAGACACUGGCCUGCCACGCCAGCGACCCGGGUUCAAAUCCCGGACGCCGCA hit 22 : 5698 5771 (fwd) 76.09 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC::CG:UAG:: AGCC+GGU+A ::C C:GGCCU+ CA GCC:G G 5698 GCGGCGUUAGUCCAGCCuGGUuAAGACACUGGCCUGCCACGCCAGCG------------- 5744 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCGGGUUCAAAUCCCGG:CG::GCA 5745 -----ACCCGGGUUCAAAUCCCGGACGCCGCA--- 5771 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1010,sp|AE000860.1|AE000860 Methanobacterium thermoautotrophicum from bases 749346 to 763438 (section 66 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GCCGUGGUAGUUCAGUUGGGAGAACGCCAGACUGAAGAUCUGGAUGUCGCUGGUUCAAGUCCGGCCCACGGCA hit 23 : 287 359 (fwd) 73.31 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC::GGUAG:UCAG+ GG AGA:CGCC:G:CU++ +A:C:GGA 287 GCCGUGGUAGUUCAGUUGGGAGAACGCCAGACUGAAGAUCUGGAU--------------- 331 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:C:GGUUCAA UCC:G:CC::GGCA 332 ---GuCGCUGGUUCAAGUCCGGCCCACGGCA--- 359 ----endhit ----hitSequence: GGGCCGGUGGUCUAGGGGUAUGAUACCUCCCUGACACGGAGGUGAUCACGAGUUCGAAUCUCGUCCGGCCCA hit 24 : 211 282 (fwd) 69.69 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::CCGGU+::::AG GGUA:::: CC::CCU++CA G::GG+G 211 GGGCCGGUGGUCUAGG-GGUAUGAUACCUCCCUGACACGGAGGUG--------------- 254 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 ++C:CG:GUUC+AAUC:CG:CCGG::CA 255 ---AuCACGAGUUCGAAUCUCGUCCGGCCCA--- 282 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1019,sp|AE000869.1|AE000869 Methanobacterium thermoautotrophicum from bases 862690 to 876388 (section 75 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: AGUCCCGUGGGGUAGUGGUAAUCCUGCUGGGCUUUGGACCCGGCGACAGCGGUUCGACUCCGCUCGGGACUA hit 25 : 1251 1322 (fwd) 57.37 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 :::CC:GU+::::AG+ GGU A::::GC GG:CUU+ +A:CC G G 1251 AGUCCCGUGGGGUAGU-GGUaAUCCUGCUGGGCUUUGGACCCGGCG-------------- 1295 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C:::GGUUC+A UCC:::C:GG:::A 1296 ----ACAGCGGUUCGACUCCGCUCGGGACUA--- 1322 ----endhit ----hitSequence: AGUCCCGUGGGGUAAUGGCAAUCCUGAUGGACUCUGGAUCCAUCGAUAGCGGUUCGACUCCGCUCGGGACUA hit 26 : 1111 1182 (fwd) 43.93 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 :::CC:GU+::::A + GG+ A::::G::GG:CU++ +A:CC:: G 1111 AGUCCCGUGGGGUAAU-GGCaAUCCUGAUGGACUCUGGAUCCAUCG-------------- 1155 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 + :::GGUUC+A UCC:::C:GG:::A 1156 ----AUAGCGGUUCGACUCCGCUCGGGACUA--- 1182 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1026,sp|AE000876.1|AE000876 Methanobacterium thermoautotrophicum from bases 947295 to 966282 (section 82 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCCGUAGCUCAGUCUGGCAGAGCGCUUGGCUUUUAACCAAGUGGUCGCGGGUUCAAUUCCCGUCGGGCCCG hit 27 : 7136 7209 (fwd) 85.65 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CC:GUAGCUCAG+C+GG+AGAGCGC::G:CUU++AA:C::G+G 7136 GGGCCCGUAGCUCAGUCuGGCAGAGCGCUUGGCUUUUAACCAAGUG-------------- 7181 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C+CGGGUUCAA UCCCG+C:GG::C 7182 ----GuCGCGGGUUCAAUUCCCGUCGGGCCCG--- 7209 ----endhit ----hitSequence: GCCCUGGUGGUGUAGGGGCUAUCAUGCGGGCCUGUCGAGCCCGCGACUCGGGUUCAAUUCCCGGCCAGGGCG hit 28 : 7056 7127 (fwd) 66.98 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCCC:GGU+::::AG GG++A::::GC:GGCCU++C+AGCC:G G 7056 GCCCUGGUGGUGUAGG-GGCuAUCAUGCGGGCCUGUCGAGCCCGCG-------------- 7100 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C:CGGGUUCAA UCCCG:CC:GGGC 7101 ----ACUCGGGUUCAAUUCCCGGCCAGGGCG--- 7127 ----endhit ----hitSequence: CCCGCCUUAGCUCAAUUGGCAGAGCAUCGGACUGUAGAUCCGAGGGUUGCUGGUUCAAGUCCGGCAGGCGGGA hit 29 : 6855 6927 (fwd) 54.96 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 CC:C::UAGCUCA + GG+AGAGC :CGG:CU++ +A:CCG: G 6855 CCCGCCUUAGCUCAAUUGGCAGAGCAUCGGACUGUAGAUCCGAGG--------------- 6899 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+ :C:GGUUCAA UCC:G:::G:GG A 6900 ---GuUGCUGGUUCAAGUCCGGCAGGCGGGA--- 6927 ----endhit ----hitSequence: GGGACCAUAGGGUAGCUUGGUCGAUCCUUUGGGCUUUGGGAGCCUGAGACCCCGGUUCAAAUCCGGGUGGUCCCA hit 30 : 6726 6800 (fwd) 64.82 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 G:::C::UA::::AGC +GGU+ A:::: : GGC UUG +AGCC :AG 6726 GGGACCAUAGGGUAGCUuGGUcgAUCCUUUGGGCUUUGGGAGCCUGAG------------ 6773 >>>>>>,,<<<<<_______>>>>>))))))):::: 58 agggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCC:GGUUCAAAUCC:GG::G:::CA 6774 ------ACCCCGGUUCAAAUCCGGGUGGUCCCA--- 6800 ----endhit ----hitSequence: GCCUCGGUAGCUCAGUCUGGUGGAGCGCGAGACUUGUAAUCUCGUGGUCGCGGGUUCAAUUCCCGUCCGGGGCU hit 31 : 6645 6718 (fwd) 75.91 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCC:CGGUAGCUCAG+C+GGU GAGCGC::G:CUUG+AA:C::G+G 6645 GCCUCGGUAGCUCAGUCuGGUGGAGCGCGAGACUUGUAAUCUCGUG-------------- 6690 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C+CGGGUUCAA UCCCG+CCG:GGC 6691 ----GuCGCGGGUUCAAUUCCCGUCCGGGGCU--- 6718 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1027,sp|AE000877.1|AE000877 Methanobacterium thermoautotrophicum from bases 966225 to 976858 (section 83 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GCCGGGAUAGCCUAGCCAGGUAAGGCGCAAGACUGGAAAUCUUGUGGAGCUUUGCUCCUCCUGGGUUCAAAUCCCAGUCCCGGCG hit 32 : 1878 1962 (fwd) 66.99 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCC::G:UAGC: AGCC GGUA :GCGC::G:CU+G AA:C::G+GG: U G 1878 GCCGGGAUAGCCUAGCCaGGUAAGGCGCAAGACUGGAAAUCUUGUGGAG---CUUUG--- 1931 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 :C +CC:GGGUUCAAAUCCC:G:C::GGC 1932 -CUCCuCCUGGGUUCAAAUCCCAGUCCCGGCG--- 1962 ----endhit ----hitSequence: GCCGGGAUAGCCUAGCCAGGUAAGGCGCGGGACUUGAGAUCCCGUGGAGAUUCUCUCCGCCUGGGUUCAAAUCCCAGUCCCGGCG hit 33 : 1753 1837 (fwd) 68.64 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCC::G:UAGC: AGCC GGUA :GCGC:GG:CUUG +A:CC:G+GG: :: :: 1753 GCCGGGAUAGCCUAGCCaGGUAAGGCGCGGGACUUGAGAUCCCGUGGAGAUU------CU 1806 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 :CGCC:GGGUUCAAAUCCC:G:C::GGC 1807 CUCCGCCUGGGUUCAAAUCCCAGUCCCGGCG--- 1837 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1043,sp|AE000893.1|AE000893 Methanobacterium thermoautotrophicum from bases 1154519 to 1165808 (section 99 of 148) of the complete genome. ----isReversed: 1 ----hitSequence: GCCGGGGUGGGGUAGGCGGUUAUCCUUCGGGACUGUGGAUCCCGCGACUCGGGUUCAAAUCUCGGCCCCGGCCCCA hit 34 : 5589 5514 (rev) 61.55 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCC::GGU+::::AG CGGU+A:::: C:GG:CU++ +A:CC:G G 5702 GCCGGGGUGGGGUAGGCGGUuAUCCUUCGGGACUGUGGAUCCCGCG-------------- 5747 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C:CG GUUCAAAUC CG:CC::GGC CCA 5748 ----ACUCGGGUUCAAAUCUCGGCCCCGGCCCCA 5777 ----endhit ----hitSequence: GCGGGGGUGCCCGAGCUGGCCAAAGGGGACAGGCUUAGGACCUGUUGGCGUAGGCCUACCAGGGUUCGAAUCCCUGCCCCCGCA hit 35 : 5691 5608 (rev) 68.17 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC:::GGU+:C::AGC GG++ A::G:G:C:G:CUU+ +A:C:G:+ GGC GUAG 5600 GCGGGGGUGCCCGAGCUGGCcaAAGGGGACAGGCUUAGGACCUGUU-GGC----GUAG-- 5652 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 GCC CC:GGGUUC+AAUCCC:GCC:::GCA 5653 --GCCUaCCAGGGUUCGAAUCCCUGCCCCCGCA--- 5683 ----endhit ----hitSequence: GCUCCGGUAGUGUAGUCCGGCCAAUCAUUUCGGCCUUUCGAGCCGAAGACUCGGGUUCAAAUCCCGGCCGGAGCA hit 36 : 5810 5736 (rev) 77.40 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GC:CCGGUA::::AG+C GG++ A:::: :CGGCCUU+C+AGCCG:AG 5481 GCUCCGGUAGUGUAGUCcGGCcaAUCAUUUCGGCCUUUCGAGCCGAAG------------ 5528 >>>>>>,,<<<<<_______>>>>>))))))):::: 58 agggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C:CGGGUUCAAAUCCCG:CCGG:GCA 5529 ------ACUCGGGUUCAAAUCCCGGCCGGAGCA--- 5555 ----endhit ----hitSequence: GGGCCCAUAGCUUAGCCAGGUAGAGGCCCGGCUCAUAACCGGGCGGCCAUGGGUUCGAAUCCCAUUGGGCCCA hit 37 : 5901 5829 (rev) 73.35 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CC::UAGCU:AGCC GGUA:AG GCC:G:CU+++AA:C:GG G 5390 GGGCCCAUAGCUUAGCCaGGUAGAG-GCCCGGCUCAUAACCGGGCG-------------- 5434 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C::GGGUUC+AAUCCC::::GG::CA 5435 ----GcCAUGGGUUCGAAUCCCAUUGGGCCCA--- 5462 ----endhit ----hitSequence: GCCGCCGUAGCUCAGUAGGUAGAGCGUUCGGCUGUUAACCGAUUGGUCACAGGUUCGAGCCCUGUCGGCGGCG hit 38 : 5978 5906 (rev) 66.51 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC:C:GUAGCUCAG+ GGUAGAGCG ::G:CU+++AA:C:: +G 5313 GCCGCCGUAGCUCAGUAGGUAGAGCGUUCGGCUGUUAACCGAUUG--------------- 5357 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:C:GGUUC+A CC:G:C:G:GGC 5358 ---GuCACAGGUUCGAGCCCUGUCGGCGGCG--- 5385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1043,sp|AE000893.1|AE000893 Methanobacterium thermoautotrophicum from bases 1154519 to 1165808 (section 99 of 148) of the complete genome. ----isReversed: 1 ----hitSequence: GGGGUCAUGGUGUAACCAGGCUAUCAUCUGGGACUCCAGUUGUCUUUGAAGAAAAUGCGCGCUCUGACUACAGUAUGAUGACCAAUUGGAGUACUGAGACAAGAGAAAUCCUAGGAUCUGGGUUCAAAUCCCAGUGACCCCA hit 39 : 4554 4413 (rev) 40.99 bits (((((((,,<<<<____.___._>>>>,<<<<<______..................... 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcA..................... 37 G::::::U+::::A CC GG++A:::: : GG:CU+ + + ++++++++ + + 6737 GGGGUCAUGGUGUAACCaGGCuAUCAUCUGGGACUCCAGuugucuuugaagaaaaugcgc 6796 ..............................................._>>>>>,,<<<<< 38 ...............................................AgCCgGaGggccc 50 + ++ + ++ + ++ ++ ++ ++++ + ++++ +++++++A:CC : G 6797 gcucugacuacaguaugaugaccaauuggaguacugagacaagagaaAUCCUAGG----- 6851 <<____>>>>>>>,,<<<<<_______>>>>>))))))):::: 51 aaGUAGaagggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 + C:GGGUUCAAAUCCC:G::::::CA 6852 -------------AUCUGGGUUCAAAUCCCAGUGACCCCA--- 6878 ----endhit ----hitSequence: GCCAAGGUAGCUUAGUGGCGAAGCGGUGGACUGCAGAUCCAUUACACGUGAGUUCAAAUCUCACCCUUGGCU hit 40 : 4645 4574 (rev) 50.63 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC::GGUAGCU AG+ GG+ AGCG :GG:CU+ +A:CC: + 6646 GCCAAGGUAGCUUAGU-GGCGAAGCGGUGGACUGCAGAUCCAUUA--------------- 6689 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 C::G:GUUCAAAUC:C::CC::GGC 6690 ---CaCGUGAGUUCAAAUCUCACCCUUGGCU--- 6717 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1044,sp|AE000894.1|AE000894 Methanobacterium thermoautotrophicum from bases 1165751 to 1176238 (section 100 of 148) of the complete genome. ----isReversed: 1 ----hitSequence: AGCGGGGUGGGGUAGUCUGGUGAUCCCGCGGGGCUCAUAACCCCGAGAUCCCUAGUUCAAAUCUAGGCCCCGCUA hit 41 : 8519 8445 (rev) 71.44 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 ::C::GGU+G:::AG+C+GGU A:::CGC:GG:CU+++AA:CC:GAG 1970 AGCGGGGUGGGGUAGUCuGGUgAUCCCGCGGGGCUCAUAACCCCGAG------------- 2016 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 ++CCC::GUUCAAAUC::GGCC::G::A 2017 -----AuCCCUAGUUCAAAUCUAGGCCCCGCUA--- 2044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1045,sp|AE000895.1|AE000895 Methanobacterium thermoautotrophicum from bases 1176181 to 1189406 (section 101 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCCGUAGCCUAGCCAGGAUAGGGCAUCAGACUCCUAAUCUGAAGGUCCCGGGUUCAAAUCCCGGCGGGUCCG hit 42 : 4974 5048 (fwd) 81.21 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G::CC:GUAGC::AGCC GG +A::GC :C:G:CU+ +AA:C:G:AG 4974 GGGCCCGUAGCCUAGCCaGGAuAGGGCAUCAGACUCCUAAUCUGAAG------------- 5020 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCCGGGUUCAAAUCCCGGC:GG::C 5021 -----GuCCCGGGUUCAAAUCCCGGCGGGUCCG--- 5048 ----endhit ----hitSequence: GGGCCCGUAGCCUAGCCAGGAUAGGGCGUCGGACUUCUAAUCCGAAGGUCCCGGGUUCAAAUCCCGGCGGGUCCG hit 43 : 4876 4950 (fwd) 88.00 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G::CC:GUAGC::AGCC GG +A::GCG:CGG:CUU +AA:CCG:AG 4876 GGGCCCGUAGCCUAGCCaGGAuAGGGCGUCGGACUUCUAAUCCGAAG------------- 4922 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCCGGGUUCAAAUCCCGGC:GG::C 4923 -----GuCCCGGGUUCAAAUCCCGGCGGGUCCG--- 4950 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1047,sp|AE000897.1|AE000897 Methanobacterium thermoautotrophicum from bases 1199998 to 1212024 (section 103 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCCGUAGUCUAGCCUGGAAUAUGACGUGGGACUUCGGAUCCCAAGGUCGGGGGUUCAAAUCCCCCCGGGUCCG hit 44 : 8316 8391 (fwd) 81.51 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 G::CC:GUAG:::AGCC+GG +A:::CG::GG:CUU +A:CC::AG 8316 GGGCCCGUAGUCUAGCCuGGAauAUGACGUGGGACUUCGGAUCCCAAG------------ 8363 >>>>>>,.,<<<<<_______>>>>>))))))):::: 58 agggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C::GGGUUCAAAUCCC::C:GG::C 8364 ------GuCGGGGGUUCAAAUCCCCCCGGGUCCG--- 8391 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1055,sp|AE000905.1|AE000905 Methanobacterium thermoautotrophicum from bases 1293944 to 1305586 (section 111 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCGGUGGUCUAGGGGUAUGAUACCUCGCUCACACCGAGGUGGUCACGAGUUCGAAUCUCGUCCGGCCCA hit 45 : 2142 2213 (fwd) 69.61 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::CCGGU+::::AG GGUA:::: CC:::CU++CA :::GG+G 2142 GGGCCGGUGGUCUAGG-GGUAUGAUACCUCGCUCACACCGAGGUG--------------- 2185 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CG:GUUC+AAUC:CG:CCGG::CA 2186 ---GuCACGAGUUCGAAUCUCGUCCGGCCCA--- 2213 ----endhit ----hitSequence: GGGCCGGUGGUCUAGGGGUAUGAUACCUCGCUUACAACGAGGUGGUCACGAGUUCGAAUCUCGUCCGGCCCA hit 46 : 2046 2117 (fwd) 72.73 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::CCGGU+::::AG GGUA:::: CC:::CUU+CAA:::GG+G 2046 GGGCCGGUGGUCUAGG-GGUAUGAUACCUCGCUUACAACGAGGUG--------------- 2089 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CG:GUUC+AAUC:CG:CCGG::CA 2090 ---GuCACGAGUUCGAAUCUCGUCCGGCCCA--- 2117 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1063,sp|AE000913.1|AE000913 Methanobacterium thermoautotrophicum from bases 1387543 to 1399771 (section 119 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GCCCUGAUAGUGUAGCGGAUAUCACGUAGGACUGCGGAUCCUAUUACCCGGGUUCAAGUCCCGGUCAGGGCA hit 47 : 66 137 (fwd) 68.84 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCCC:G:UAG:::AGC GG +A:::CG::GG:CU+ +A:CC::+ 66 GCCCUGAUAGUGUAGC-GGAuAUCACGUAGGACUGCGGAUCCUAUU-------------- 110 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCGGGUUCAA UCCCGG:C:GGGCA 111 ----ACCCGGGUUCAAGUCCCGGUCAGGGCA--- 137 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1067,sp|AE000917.1|AE000917 Methanobacterium thermoautotrophicum from bases 1434059 to 1444633 (section 123 of 148) of the complete genome. ----isReversed: 1 ----hitSequence: GCCGGGGUGGCUCAGCUGGUUAGAGCGCACGGCUCAUAGGGUAUUAAGCAGUGCUCUGACUUUUUCCUGGGAUACCGUGAGGCCGCGGGUUCGAAUCCCGCCCCCGGCA hit 48 : 6866 6758 (rev) 75.13 bits (((((((,,<<<<_______._>>>>,<<<<<______...................... 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcA...................... 37 GCC::GGU+GCUCAGC GGU+AGAGCGC::G:CU+++A+++ + +++ ++ + ++ 3710 GCCGGGGUGGCUCAGCUGGUuAGAGCGCACGGCUCAUAggguauuaagcagugcucugac 3769 ............._>>>>>,,<<<<<<<____>>>>>>>,.,<<<<<_______>>>>>) 38 .............AgCCgGaGggcccaaGUAGaagggccg.CccGGGUUCAAAUCCCggC 83 ++++ A:C::GAG G+C:CGGGUUC+AAUCCCG:C 3770 uuuuuccugggauACCGUGAG------------------GcCGCGGGUUCGAAUCCCGCC 3811 )))))):::: 84 cggggCACCA 93 C::GGCA 3812 CCCGGCA--- 3818 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1074,sp|AE000924.1|AE000924 Methanobacterium thermoautotrophicum from bases 1515051 to 1525773 (section 130 of 148) of the complete genome. ----isReversed: 1 ----hitSequence: GGGCCCGUGGCUCAGGUGGUUAGAGCGCACGGCUGAUAACCGUGAGGCCCUGGGUUCGAAUCCCAGCGGGCCCA hit 49 : 10654 10581 (rev) 80.97 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CC:GU+GCUCAG GGU+AGAGCGC::G:CU+++AA:C::GAG 70 GGGCCCGUGGCUCAGGUGGUuAGAGCGCACGGCUGAUAACCGUGAG-------------- 115 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:GC:GG::CA 116 ----GcCCUGGGUUCGAAUCCCAGCGGGCCCA--- 143 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1078,sp|AE000928.1|AE000928 Methanobacterium thermoautotrophicum from bases 1560642 to 1578217 (section 134 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GCCUUAGUGGCUCAGGUGGUAGAGCGAUGCCUUGGUAAGGCAUAGGUCGGGGGUUCGAAUCCCCCCUAAGGCU hit 50 : 16591 16663 (fwd) 69.14 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC:::GU+GCUCAG GGUAGAGCG::G:C U+G+AAG:C::AG 16591 GCCUUAGUGGCUCAGGUGGUAGAGCGAUGCCUUGGUAAGGCAUAG--------------- 16635 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C::GGGUUC+AAUCCC::C:::GGC 16636 ---GuCGGGGGUUCGAAUCCCCCCUAAGGCU--- 16663 ----endhit ----hitSequence: GCAGGGGUGCCCGAGCGGCCAAAGGGGGAGGACUUAAGAUCCUCUGGCGCAGGCCUUCGAGGGUUCGAAUCCCUUCCCCUGCA hit 51 : 16473 16555 (fwd) 66.92 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC:::GGU+:C::AGC GG++ A::G:G::GG:CUU+ +A:CC::+ GGC G AG 16473 GCAGGGGUGCCCGAGC-GGCcaAAGGGGGAGGACUUAAGAUCCUCU-GGC----GCAG-- 16524 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 GCC +C+:GGGUUC+AAUCCC:+CC:::GCA 16525 --GCCUuCGAGGGUUCGAAUCCCUUCCCCUGCA--- 16555 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1080,sp|AE000930.1|AE000930 Methanobacterium thermoautotrophicum from bases 1592014 to 1607566 (section 136 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCCGUAGCUCAGACUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA hit 52 : 11782 11855 (fwd) 88.42 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CC::UAGCUCAG C+GG AGAGCGCCG:CCUUGCAAG:CGGAG 11782 GGGCCCGUAGCUCAGACuGGGAGAGCGCCGCCCUUGCAAGGCGGAG-------------- 11827 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCCGGGUUCAAAUCCCGG::GG::CA 11828 ----GcCCCGGGUUCAAAUCCCGGUGGGUCCA--- 11855 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1090,sp|AE000940.1|AE000940 Methanobacterium thermoautotrophicum from bases 1709212 to 1724499 (section 146 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GCCGGGGUGGCCCAGUCUGGUACGGCGUUGGCCUGCUAAGCCAAUGAUCCUUUGGAUCUCGCGGGUUCAAAUCCCGUCCCCGGCG hit 53 : 9127 9211 (fwd) 69.47 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCC::GGU+GC: AG+C+GGUA :GCG::GGCCU+ +AAGCC::+G::C : : 9127 GCCGGGGUGGCCCAGUCuGGUACGGCGUUGGCCUGCUAAGCCAAUGAUCCU--------U 9178 >>>>,..,<<<<<_______>>>>>))))))):::: 60 ggccg..CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: ++C+CGGGUUCAAAUCCCG+CC::GGC 9179 UGGAUcuCGCGGGUUCAAAUCCCGUCCCCGGCG--- 9211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1090,sp|AE000940.1|AE000940 Methanobacterium thermoautotrophicum from bases 1709212 to 1724499 (section 146 of 148) of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCCGUAGCUCAGACUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA hit 54 : 11161 11234 (fwd) 88.42 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CC::UAGCUCAG C+GG AGAGCGCCG:CCUUGCAAG:CGGAG 11161 GGGCCCGUAGCUCAGACuGGGAGAGCGCCGCCCUUGCAAGGCGGAG-------------- 11206 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCCGGGUUCAAAUCCCGG::GG::CA 11207 ----GcCCCGGGUUCAAAUCCCGGUGGGUCCA--- 11234 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1093,sp|AE000943.1|AE000943 Archaeoglobus fulgidus DSM 4304 section 164 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCUCGUGGUCUAGGGGUCAUGACGUCGCCUUGACGAGGCGAAGGUCGCCCGUUCGAAUCGGGCCGAGCCCA hit 55 : 6855 6927 (fwd) 69.46 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::C::GU+G:::AG GGU+A:::CG:CG:C U++C+AG:CG:AG 6855 GGGCUCGUGGUCUAGG-GGUcAUGACGUCGCCUUGACGAGGCGAAG-------------- 6899 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:C: GUUC+AAUC :G:C::G::CA 6900 ----GuCGCCCGUUCGAAUCGGGCCGAGCCCA--- 6927 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1098,sp|AE000948.1|AE000948 Archaeoglobus fulgidus DSM 4304 section 159 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCCCGUAGCUUAGCCAGGUCAGAGCGCCCGGCUCAUAACCGGGCGGUCGAGGGUUCGAAUCCCUCCGGGCCCA hit 56 : 299 225 (rev) 89.55 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G::CC:GUAGCU:AGCC GGU+A:AGCGCC:G:CU+++AA:C:GG G 13905 GGGCCCGUAGCUUAGCCaGGUcAGAGCGCCCGGCUCAUAACCGGGCG------------- 13951 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C::GGGUUC+AAUCCC::C:GG::CA 13952 -----GuCGAGGGUUCGAAUCCCUCCGGGCCCA--- 13979 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1100,sp|AE000950.1|AE000950 Archaeoglobus fulgidus DSM 4304 section 157 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCGGUAGCUUAGCCAGGCAGAGCGCGGGACUCUUAAUCCCGCAGUCGGGGGUUCAAAUCCCUCCCGGCCCG hit 57 : 10202 10275 (fwd) 84.04 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CCGGUAGCU:AGCC GG+A:AGCGC:GG:CU+++AA:CC:G 10202 GGGCCGGUAGCUUAGCCaGGCAGAGCGCGGGACUCUUAAUCCCGCA-------------- 10247 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C: GGGUUCAAAUCCC :CCGG::C 10248 ----GuCGGGGGUUCAAAUCCCUCCCGGCCCG--- 10275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1101,sp|AE000951.1|AE000951 Archaeoglobus fulgidus DSM 4304 section 156 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGGCCGUGGGGUAGCCUGGUAGCCUCUCGGCCUGGGGCGCCGGUGACCCGAGUUCAAAUCUCGGCGGCCCCA hit 58 : 2247 2175 (rev) 73.97 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G:::C:GU+::::AGCC+GGUA:::: :CGGCCU+G + GCCG:+G 7984 GGGGCCGUGGGGUAGCCuGGUAGCCUCUCGGCCUGGGGCGCCGGUG-------------- 8029 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCG:GUUCAAAUC:CGGC:G:::CA 8030 ----ACCCGAGUUCAAAUCUCGGCGGCCCCA--- 8056 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1103,sp|AE000953.1|AE000953 Archaeoglobus fulgidus DSM 4304 section 154 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCCGGGUAGCUCAGCCAGGGAGAGCGUGCGGCUGAAGACCGCAUAGUCCCCGGUUCAAAUCCGGGUCCGGGCA hit 59 : 9739 9666 (rev) 76.54 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCCC:G:UAGCUCAGCC GG AGAGCG:::G:CU++ +A:C:::+ 1435 GCCCGGGUAGCUCAGCCaGGGAGAGCGUGCGGCUGAAGACCGCAUA-------------- 1480 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCC:GGUUCAAAUCC:GG:C:GGGCA 1481 ----GuCCCCGGUUCAAAUCCGGGUCCGGGCA--- 1508 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1104,sp|AE000954.1|AE000954 Archaeoglobus fulgidus DSM 4304 section 153 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCGGGGGUUGCCGAGCCAGGAAAAGGCGCAGGGCUUAAGACCCUGUCCCGAAGGGGUCCGCGGGUUCGAAUCCCGCCCCCCGCA hit 60 : 13178 13095 (rev) 74.40 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC:::GGU GC::AGCC GG A::GCGC:GG:CUU+ +A:CC:G+ ::C G AG 7257 GCGGGGGUUGCCGAGCCaGGAaAAGGCGCAGGGCUUAAGACCCUGU-CCC----GAAG-- 7309 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C:CGGGUUC+AAUCCCG:CC:::GCA 7310 --GGGUcCGCGGGUUCGAAUCCCGCCCCCCGCA--- 7340 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1109,sp|AE000959.1|AE000959 Archaeoglobus fulgidus DSM 4304 section 148 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCGGUAGCUCAGUCUGGUAGAGCGUCGCCUUGGCAUGGCGAAGGCCUGGGGUUCAAAUCCCCACCGGUCCA hit 61 : 9797 9870 (fwd) 81.49 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CCGGUAGCUCAG+C+GGUAGAGCG:CG:C U+GCA G:CG:AG 9797 GGGCCGGUAGCUCAGUCuGGUAGAGCGUCGCCUUGGCAUGGCGAAG-------------- 9842 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C::GGGUUCAAAUCCC::CCGG::CA 9843 ----GcCUGGGGUUCAAAUCCCCACCGGUCCA--- 9870 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1112,sp|AE000962.1|AE000962 Archaeoglobus fulgidus DSM 4304 section 145 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCGGUCGUAGUCUAGCGGCAGGACACGGGCCUCCCGAGCCCGUUGCCCGGGUUCGAAUCCCGGCGGCCGCA hit 62 : 8561 8631 (fwd) 75.07 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GC::::GUAG:::AGC GG+A:::C C:GGCCU+ C+AGCC:G+ 8561 GCGGUCGUAGUCUAGC-GGCAGGACACGGGCCUCCCGAGCCCGUU--------------- 8604 >>>,,<<<<<_______>>>>>))))))):::: 61 gccgCccGGGUUCAAAUCCCggCcggggCACCA 93 GCCCGGGUUC+AAUCCCGGC::::GCA 8605 ---GCCCGGGUUCGAAUCCCGGCGGCCGCA--- 8631 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1114,sp|AE000964.1|AE000964 Archaeoglobus fulgidus DSM 4304 section 143 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGGCCGUAGGGUAGCCUGGUGAUCCUCUCGGCUUUGGGAGCCGGUGACCCGAGUUCAAAUCUCGGCGGCCCCA hit 63 : 10249 10176 (rev) 71.27 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G:::C:GUA::::AGCC+GGU A:::: :CGGC UUG +AGCCG:+G 1501 GGGGCCGUAGGGUAGCCuGGUgAUCCUCUCGGCUUUGGGAGCCGGUG------------- 1547 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCG:GUUCAAAUC:CGGC:G:::CA 1548 -----ACCCGAGUUCAAAUCUCGGCGGCCCCA--- 1574 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1115,sp|AE000965.1|AE000965 Archaeoglobus fulgidus DSM 4304 section 142 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCUCGUAGCUCAGCGGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGCGGGUUCAAAUCCCGCCGAGUCCA hit 64 : 156 85 (rev) 85.55 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::C::GUAGCUCAGC GG AGAGCGCCG:C UUGC+AG:CGGAG 11303 GGGCUCGUAGCUCAGC-GGGAGAGCGCCGCCUUUGCGAGGCGGAG--------------- 11346 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CGGGUUCAAAUCCCG:C::G::CA 11347 ---GcCGCGGGUUCAAAUCCCGCCGAGUCCA--- 11374 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1117,sp|AE000967.1|AE000967 Archaeoglobus fulgidus DSM 4304 section 140 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: CCCGCCUUAGCUCAGAGGUAGAGCGUGGGACUGUAGUCCGCCACUCCGCGGCAGGCGGAGAUCCCAUGGUCCCCGGUUCAAAUCCGGGAGGCGGGA hit 65 : 667 572 (rev) 62.66 bits (((((((,,<<<<________>>>>,<<<<<______....................... 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcA....................... 37 CC:C::UAGCUCAG GGUAGAGCG::GG:CU++ + + + + ++ +++ +++ 12143 CCCGCCUUAGCUCAGA-GGUAGAGCGUGGGACUGUAGuccgccacuccgcggcaggcgga 12201 ._>>>>>,,<<<<<<<____>>>>>>>,.,<<<<<_______>>>>>))))))):::: 38 .AgCCgGaGggcccaaGUAGaagggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 +A:CC::+G G+CCC:GGUUCAAAUCC:GG::G:GG A 12202 gAUCCCAUG------------------GuCCCCGGUUCAAAUCCGGGAGGCGGGA--- 12238 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1122,sp|AE000972.1|AE000972 Archaeoglobus fulgidus DSM 4304 section 135 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCUCGUAGCUCAGCCAGGCAGAGCGACGGGCUUUUAACCCGUCGGUCGCGGGUUCAAAUCCCGUCGAGCCCG hit 66 : 2046 2119 (fwd) 86.34 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::C::GUAGCUCAGCC GG+AGAGCG:CGG:CUU++AA:CCG: G 2046 GGGCUCGUAGCUCAGCCaGGCAGAGCGACGGGCUUUUAACCCGUCG-------------- 2091 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C+CGGGUUCAAAUCCCG+C::G::C 2092 ----GuCGCGGGUUCAAAUCCCGUCGAGCCCG--- 2119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1122,sp|AE000972.1|AE000972 Archaeoglobus fulgidus DSM 4304 section 135 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGCCGUGGCUCAGCUGGCAGAGCGGGUGACUUGUAAUCACCAGGUCGCGGGUUCAAAUCCCGCCGGCGGCU hit 67 : 178 106 (rev) 83.16 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC:C:GU+GCUCAGC GG+AGAGCG:::G:CUUG+AA:C:::AG 15659 GCCGCCGUGGCUCAGCUGGCAGAGCGGGUGACUUGUAAUCACCAG--------------- 15703 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CGGGUUCAAAUCCCG:C:G:GGC 15704 ---GuCGCGGGUUCAAAUCCCGCCGGCGGCU--- 15731 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1135,sp|AE000985.1|AE000985 Archaeoglobus fulgidus DSM 4304 section 122 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCUCGUGGUCUAGCGGUUAUGACGUCGCCCUUACAAGGCGGAGAUCGCCGGUUCGAAUCCGGCCGAGCCCA hit 68 : 9062 8990 (rev) 81.01 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::C::GU+G:::AGC GGU+A:::CG:CG:CCUU+CAAG:CG:AG 4043 GGGCUCGUGGUCUAGC-GGUuAUGACGUCGCCCUUACAAGGCGGAG-------------- 4087 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 ++C:C:GGUUC+AAUCC:G:C::G::CA 4088 ----AuCGCCGGUUCGAAUCCGGCCGAGCCCA--- 4115 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1148,sp|AE000998.1|AE000998 Archaeoglobus fulgidus DSM 4304 section 109 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGGGGUUGCCGAGCGGUAAGGCGCACGCCUGGAGAGCGUGUGGGCGUUCGCCCGCGUGGGUUCGAAUCCCACCCCCGGCG hit 69 : 9848 9767 (rev) 72.00 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____.>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAG.aag 59 GCC::GGU GC::AGC GGUA::GCGC::GCCU+G +AGC::G+GGG GU + 432 GCCGGGGUUGCCGAGC-GGUAAGGCGCACGCCUGGAGAGCGUGUGGGC----GUUCg--- 483 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 CCGC::GGGUUC+AAUCCC::CC::GGC 484 -CCCGCGUGGGUUCGAAUCCCACCCCCGGCG--- 513 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1150,sp|AE001000.1|AE001000 Archaeoglobus fulgidus DSM 4304 section 107 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGCCGUGGCUCAGCUGGCAGAGCGGGUGAUUCGUAAUCACCAGGUCGCGGGUUCAAAUCCCGCCGGCGGCU hit 70 : 9164 9092 (rev) 80.76 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC:C:GU+GCUCAGC GG+AGAGCG:::G: U+G+AA:C:::AG 2567 GCCGCCGUGGCUCAGCUGGCAGAGCGGGUGAUUCGUAAUCACCAG--------------- 2611 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CGGGUUCAAAUCCCG:C:G:GGC 2612 ---GuCGCGGGUUCAAAUCCCGCCGGCGGCU--- 2639 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1152,sp|AE001002.1|AE001002 Archaeoglobus fulgidus DSM 4304 section 105 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCCACGGUAGCUCAGCAGGAAGAGCGCGUGCUUGGUAAGCACGAGGUCCCGGGUUCAAAUCCCGGCCGUGGCU hit 71 : 5471 5543 (fwd) 79.36 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC:CGGUAGCUCAGC GG AGAGCGC::GC U+G+AAGC::GAG 5471 GCCACGGUAGCUCAGCAGGAAGAGCGCGUGCUUGGUAAGCACGAG--------------- 5515 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCCGGGUUCAAAUCCCGGCCG:GGC 5516 ---GuCCCGGGUUCAAAUCCCGGCCGUGGCU--- 5543 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1152,sp|AE001002.1|AE001002 Archaeoglobus fulgidus DSM 4304 section 105 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCAGGGUGGCAGAGGGGCUAUGCGGCGGACUGCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGCU hit 72 : 2723 2652 (rev) 53.10 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC::GGU+GC :AG GG+ : GCG:CGG:CU+ +A:CCG:+ 8060 GCCAGGGUGGCAGAGG-GGCUAUGCGGCGGACUGCAGAUCCGCUU--------------- 8103 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 CCC:GGUUC+AAUCC:GGCC::GGC 8104 ---UaCCCCGGUUCGAAUCCGGGCCCUGGCU--- 8131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1157,sp|AE001007.1|AE001007 Archaeoglobus fulgidus DSM 4304 section 100 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCGCCGAUGGUGUAGCCUGGUAACACAGGGGCUUGCCGAGCCCCUGCCCCGGGUUCAAAUCCCGGUCGGCGCA hit 73 : 11559 11631 (fwd) 74.55 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GC:CCG:U+G:: AGCC+GGUA ::C ::GGC U+ C+AGCC::+ 11559 GCGCCGAUGGUGUAGCCuGGUAACACAGGGGCUUGCCGAGCCCCU--------------- 11603 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCCGGGUUCAAAUCCCGG:CGG:GCA 11604 ----GcCCCGGGUUCAAAUCCCGGUCGGCGCA--- 11631 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1164,sp|AE001014.1|AE001014 Archaeoglobus fulgidus DSM 4304 section 93 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCUCCGGUGGUGUAGCCCGGCCAAUCAUACGGGACUCUCGAUCCCGUGACCCGGGUUCAAAUCCCGGCCGGAGCA hit 74 : 205 131 (rev) 78.77 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GC:CCGGU+::::AGCC GG++ A:::: C:GG:CU++C+A:CC:G+G 10432 GCUCCGGUGGUGUAGCCcGGCcaAUCAUACGGGACUCUCGAUCCCGUG------------ 10479 >>>>>>,,<<<<<_______>>>>>))))))):::: 58 agggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCGGGUUCAAAUCCCGGCCGG:GCA 10480 ------ACCCGGGUUCAAAUCCCGGCCGGAGCA--- 10506 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1166,sp|AE001016.1|AE001016 Archaeoglobus fulgidus DSM 4304 section 91 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCCCGUGGCUCAGCAUGGAUAGAGCGACGGCCUUCUAAGCCGUAGAUCGCGGGUUCAAAUCCCGCCGGGUCCG hit 75 : 11208 11134 (rev) 87.36 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G::CC:GU+GCUCAGC +GG +AGAGCG:CGGCCUU +AAGCCG:AG 1539 GGGCCCGUGGCUCAGCAuGGAuAGAGCGACGGCCUUCUAAGCCGUAG------------- 1585 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 ++C:CGGGUUCAAAUCCCG:C:GG::C 1586 -----AuCGCGGGUUCAAAUCCCGCCGGGUCCG--- 1613 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1176,sp|AE001026.1|AE001026 Archaeoglobus fulgidus DSM 4304 section 81 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GGGGCCGUGGGGUAGCCUGGUGAUCCUGCGGCGUUCGGGACGCCGUGACCCGAGUUCAAAUCUCGGCGGCCCCA hit 76 : 6103 6176 (fwd) 72.83 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G:::C:GU+::::AGCC+GGU A::::GC:G:: U+G +A::C:G+G 6103 GGGGCCGUGGGGUAGCCuGGUgAUCCUGCGGCGUUCGGGACGCCGUG------------- 6149 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCG:GUUCAAAUC:CGGC:G:::CA 6150 -----ACCCGAGUUCAAAUCUCGGCGGCCCCA--- 6176 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1176,sp|AE001026.1|AE001026 Archaeoglobus fulgidus DSM 4304 section 81 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGGGGUUGCAGAGCCAGGCCACUGCGGGAGACUCGAGAUCUCCUGCCCGAAAGGGCGCGUGGGUUCGAAUCCCACCCCCGGCG hit 77 : 2871 2787 (rev) 59.23 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____.> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAG.a 57 GCC::GGU GC AGCC GG++A GCG:::G:CU+G +A:C:::+G :C G A++ 7610 GCCGGGGUUGCAGAGCCaGGCcACUGCGGGAGACUCGAGAUCUCCUGCCC----GAAAg- 7664 >>>>>>,,<<<<<_______>>>>>))))))):::: 58 agggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 G: GC::GGGUUC+AAUCCC::CC::GGC 7665 ---GGCGCGUGGGUUCGAAUCCCACCCCCGGCG--- 7694 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1178,sp|AE001028.1|AE001028 Archaeoglobus fulgidus DSM 4304 section 79 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCCCCGUGGGGUAGGGGACAUCCUGGUGGCCUUCGGAGCCACAGACCCGGGUUCGAUUCCCGGCGGGGGCG hit 78 : 8638 8567 (rev) 67.24 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCCCC:GU+::::AG GG +A::::G::GGCCUU +AGCC::AG 1484 GCCCCCGUGGGGUAGG-GGAcAUCCUGGUGGCCUUCGGAGCCACAG-------------- 1528 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCGGGUUC+A UCCCGGC:GGGGC 1529 ----ACCCGGGUUCGAUUCCCGGCGGGGGCG--- 1555 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1180,sp|AE001030.1|AE001030 Archaeoglobus fulgidus DSM 4304 section 77 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCUCGUAGCUCAGCGGGAGAGCGCCGCCUUCGCGAGGCGGAGGCCGCGGGUUCAAAUCCCGCCGAGUCCA hit 79 : 10646 10717 (fwd) 84.99 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::C::GUAGCUCAGC GG AGAGCGCCG:C U+GC+AG:CGGAG 10646 GGGCUCGUAGCUCAGC-GGGAGAGCGCCGCCUUCGCGAGGCGGAG--------------- 10689 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CGGGUUCAAAUCCCG:C::G::CA 10690 ---GcCGCGGGUUCAAAUCCCGCCGAGUCCA--- 10717 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1193,sp|AE001043.1|AE001043 Archaeoglobus fulgidus DSM 4304 section 64 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCUCCGGUGGUGUAGCCCGGCCAAUCAUUCCGGCCUUUCGAGGUUUCGCCGAAGAGAGCCGGCGACCCGGGUUCAAAUCCCGGCCGGAGCA hit 80 : 8042 8132 (fwd) 73.09 bits (((((((,,<<<<____.___.._>>>>,<<<<<______................_>>> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcA................AgCC 41 GC:CCGGU+::::AGCC GG++ A:::: CCGGCCUU+C++++ + ++++++AGCC 8042 GCUCCGGUGGUGUAGCCcGGCcaAUCAUUCCGGCCUUUCGagguuucgccgaagagAGCC 8101 >>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>>))))))):::: 42 gGaGggcccaaGUAGaagggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 GG G +CCCGGGUUCAAAUCCCGGCCGG:GCA 8102 GGCG------------------ACCCGGGUUCAAAUCCCGGCCGGAGCA--- 8132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1193,sp|AE001043.1|AE001043 Archaeoglobus fulgidus DSM 4304 section 64 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCCCGUGGGGUAGUGGAUAUCCUGGAGGUCUCCGGAACCUCCGACCCGGGUUCAAUUCCCGGCGGGCCCG hit 81 : 166 95 (rev) 64.74 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CC:GU+::::AG+ GG +A::::G::GG:CU+ +A:CC:: G 10510 GGGCCCGUGGGGUAGU-GGAuAUCCUGGAGGUCUCCGGAACCUCCG-------------- 10554 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCGGGUUCAA UCCCGGC:GG::C 10555 ----ACCCGGGUUCAAUUCCCGGCGGGCCCG--- 10581 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1194,sp|AE001044.1|AE001044 Archaeoglobus fulgidus DSM 4304 section 63 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCGCGGGUAGUCUAGCGGUAGGACAACGCCCUUCCGAGGCGUUAGCCCGGGUUCGAAUCCCGGCCCGCGCA hit 82 : 11137 11207 (fwd) 76.95 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GC:C:GGUAG:::AGC GGUA:::C :CG:CCUU C+AG:CG:+ 11137 GCGCGGGUAGUCUAGC-GGUAGGACAACGCCCUUCCGAGGCGUUA--------------- 11180 >>>,,<<<<<_______>>>>>))))))):::: 61 gccgCccGGGUUCAAAUCCCggCcggggCACCA 93 GCCCGGGUUC+AAUCCCGGCC:G:GCA 11181 ---GCCCGGGUUCGAAUCCCGGCCCGCGCA--- 11207 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1195,sp|AE001045.1|AE001045 Archaeoglobus fulgidus DSM 4304 section 62 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCGGGGGUUGCCGAGUGGCCAAAGGCGGUGGACUCAAGACCUGAUGGGGAGAAAUCCACUCCCGUAGGGGUUCGAGGGUUCGAAUCCCUCCCCCCGCA hit 83 : 13452 13355 (rev) 62.59 bits (((((((,,<<<<_______.._>>>>,<<<<<______..............._>>>>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcA...............AgCCgG 43 GC:::GGU GC::AG+ GG++ A::GCG::GG:CU++ ++ ++ ++++++++A:CC:: 61 GCGGGGGUUGCCGAGU-GGCcaAAGGCGGUGGACUCAAGaccugauggggagaaAUCCAC 119 ,,<<<<<<<____>>>>>>>,.,<<<<<_______>>>>>))))))):::: 44 aGggcccaaGUAGaagggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 + ::C GUAG G:: +C::GGGUUC+AAUCCC::CC:::GCA 120 U-CCC----GUAG----GGGUuCGAGGGUUCGAAUCCCUCCCCCCGCA--- 158 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1199,sp|AE001049.1|AE001049 Archaeoglobus fulgidus DSM 4304 section 58 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCCCGGAUGGGGUAGUGGUUAUCCUCUGGGACUGUGGAUCCCAGGAGCCGGGUUCGAAUCCCGGUCCGGGCC hit 84 : 6676 6747 (fwd) 56.25 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCCC:G:U+::::AG+ GGU+A:::: ::GG:CU++ +A:CC:: G 6676 GCCCGGAUGGGGUAGU-GGUuAUCCUCUGGGACUGUGGAUCCCAGG-------------- 6720 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 + CCGGGUUC+AAUCCCGG:C:GGGC 6721 ----AGCCGGGUUCGAAUCCCGGUCCGGGCC--- 6747 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1200,sp|AE001050.1|AE001050 Archaeoglobus fulgidus DSM 4304 section 57 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGGGGUUGCAGAGAGGUACUGCGCCAGCCUUGAGAGCUGGUGCCCGUAAGGGCUCCUGGGUUCAAAUCCCAGCCCCGGCG hit 85 : 3654 3573 (rev) 66.12 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC::GGU GC AG GGUA GCGCC:GCCUUG +AGC:GG+G::C GUA+ 6405 GCCGGGGUUGCAGAGA-GGUACUGCGCCAGCCUUGAGAGCUGGUGCCC----GUAA---- 6455 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +CC:GGGUUCAAAUCCC:GCC::GGC 6456 GGGCuCCUGGGUUCAAAUCCCAGCCCCGGCG--- 6486 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1207,sp|AE001057.1|AE001057 Archaeoglobus fulgidus DSM 4304 section 50 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCCCCCGUGGGGUAGCGGAUAUCCUGAGGGGCUGCGGACUCCUCGACCCGGGUUCAACUCCCGGCGGGGGCA hit 86 : 3283 3354 (fwd) 63.73 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCCCC:GU+::::AGC GG +A::::G::G :CU+ +A: C:: G 3283 GCCCCCGUGGGGUAGC-GGAuAUCCUGAGGGGCUGCGGACUCCUCG-------------- 3327 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCCGGGUUCAA UCCCGGC:GGGGCA 3328 ----ACCCGGGUUCAACUCCCGGCGGGGGCA--- 3354 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1212,sp|AE001062.1|AE001062 Archaeoglobus fulgidus DSM 4304 section 45 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: AGCCCCGUGGUGUAGCGGUCAAUCAUGCGGGCCUUUGGAGCCCGCGACCGGGGUUCGAAUCCCCGCGGGGCUA hit 87 : 8209 8137 (rev) 74.66 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 ::CCC:GU+::::AGC GGU+ A::::GC:GGCCUU+ +AGCC:G G 2024 AGCCCCGUGGUGUAGC-GGUcaAUCAUGCGGGCCUUUGGAGCCCGCG------------- 2069 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CC:GGGUUC+AAUCCC:GC:GGG::A 2070 -----ACCGGGGUUCGAAUCCCCGCGGGGCUA--- 2096 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1215,sp|AE001065.1|AE001065 Archaeoglobus fulgidus DSM 4304 section 42 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCGGGGGUUGCCGAGCGGACAAAGGCGCGGGAUUCAGGGUCCCGUCCCGUAGGGGUUCGAGGGUUCGAAUCCCUCCCCCCGCA hit 88 : 3617 3699 (fwd) 64.99 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC:::GGU GC::AGC GG + A::GCGC:GG: U++ + :CC:G+ ::C GUAG 3617 GCGGGGGUUGCCGAGC-GGAcaAAGGCGCGGGAUUCAGGGUCCCGU-CCC----GUAG-- 3668 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C::GGGUUC+AAUCCC::CC:::GCA 3669 --GGGUuCGAGGGUUCGAAUCCCUCCCCCCGCA--- 3699 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1222,sp|AE001072.1|AE001072 Archaeoglobus fulgidus DSM 4304 section 35 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCCGAGGUAGCCUAGCUGGUUGGGGCGCCUGACUCAUAAUCAGGAGGUCGGGGGUUCGAAUCCCCCCCUCGGCA hit 89 : 4764 4837 (fwd) 80.05 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCC::GGUAGC::AGC GGU+ ::GCGCC:G:CU+++AA:C:GGAG 4764 GCCGAGGUAGCCUAGCUGGUuGGGGCGCCUGACUCAUAAUCAGGAG-------------- 4809 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C::GGGUUC+AAUCCC::CC::GGCA 4810 ----GuCGGGGGUUCGAAUCCCCCCCUCGGCA--- 4837 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1224,sp|AE001074.1|AE001074 Archaeoglobus fulgidus DSM 4304 section 33 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCGGGGGUUGCCGAGCGGACAAAGGCGCAGGAUUGAGGGUCCUGUCCCGUAGGGGUUCGAGGGUUCGAAUCCCUCCCCCCGCA hit 90 : 6971 7053 (fwd) 65.64 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC:::GGU GC::AGC GG + A::GCGC:GG: U++ + :CC:G+ ::C GUAG 6971 GCGGGGGUUGCCGAGC-GGAcaAAGGCGCAGGAUUGAGGGUCCUGU-CCC----GUAG-- 7022 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C::GGGUUC+AAUCCC::CC:::GCA 7023 --GGGUuCGAGGGUUCGAAUCCCUCCCCCCGCA--- 7053 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1226,sp|AE001076.1|AE001076 Archaeoglobus fulgidus DSM 4304 section 31 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GGACCCGUAGCCUAGCAGGACAGGGCGUGGGCCUCCUAAGCCCAAGGUCGCGGGUUCGAAUCCCGCCGGGUCCG hit 91 : 2732 2805 (fwd) 78.74 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CC:GUAGC::AGC GG +A::GCG::GGCCU+ +AAGCC::AG 2732 GGACCCGUAGCCUAGCAGGAcAGGGCGUGGGCCUCCUAAGCCCAAG-------------- 2777 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CGGGUUC+AAUCCCG:C:GG::C 2778 ----GuCGCGGGUUCGAAUCCCGCCGGGUCCG--- 2805 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1230,sp|AE001080.1|AE001080 Archaeoglobus fulgidus DSM 4304 section 27 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCGGGGGUUGCCGAGCGGCCAAAGGCGCUGGAUUUAGGGUCCAGUCCCGUAGGGGUUCGAGGGUUCGAAUCCCUCCCCCCGCA hit 92 : 3358 3276 (rev) 67.51 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC:::GGU GC::AGC GG++ A::GCGC:GG: UU+ + :CC:G+ ::C GUAG 6707 GCGGGGGUUGCCGAGC-GGCcaAAGGCGCUGGAUUUAGGGUCCAGU-CCC----GUAG-- 6758 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C::GGGUUC+AAUCCC::CC:::GCA 6759 --GGGUuCGAGGGUUCGAAUCCCUCCCCCCGCA--- 6789 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1237,sp|AE001087.1|AE001087 Archaeoglobus fulgidus DSM 4304 section 20 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCCGCCGUAGCUUAGCUGGUAGAGCGUCCGGCUGUUAACCGGACGGUCGCAGGUUCGAAUCCUGCCGGCGGCG hit 93 : 4936 5008 (fwd) 80.84 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC:C:GUAGCU:AGC GGUA:AGCG:C:G:CU+++AA:C:G: G 4936 GCCGCCGUAGCUUAGCUGGUAGAGCGUCCGGCUGUUAACCGGACG--------------- 4980 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:C:GGUUC+AAUCC:G:C:G:GGC 4981 ---GuCGCAGGUUCGAAUCCUGCCGGCGGCG--- 5008 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1237,sp|AE001087.1|AE001087 Archaeoglobus fulgidus DSM 4304 section 20 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCCGGGUGGUGUAGUCCGGCCUAUCAUGCGGGCCUGUCGUGGAGAUGGGGUCCUUAAGCCCUAAAUCCGCGGAAAGCCCGCGACUCGGGUUCAAAUCCCGGCCCGGGCG hit 94 : 227 118 (rev) 68.05 bits (((((((,,<<<<____.___.._>>>>,<<<<<______.................... 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcA.................... 37 GCCC:GGU+::::AG+C GG+++A::::GC:GGCCU++C+ +++++ ++++ +++ 12539 GCCCGGGUGGUGUAGUCcGGCcuAUCAUGCGGGCCUGUCGuggagaugggguccuuaagc 12598 ..............._>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>> 38 ...............AgCCgGaGggcccaaGUAGaagggccgCccGGGUUCAAAUCCCgg 82 +++ + ++++AGCC:G G +C:CGGGUUCAAAUCCCG: 12599 ccuaaauccgcggaaAGCCCGCG------------------ACUCGGGUUCAAAUCCCGG 12640 ))))))):::: 83 CcggggCACCA 93 CC:GGGC 12641 CCCGGGCG--- 12648 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1238,sp|AE001088.1|AE001088 Archaeoglobus fulgidus DSM 4304 section 19 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCUCGUGGUCUAGUGGUUAUGACGCCUGCCUCACACGCAGGAGGUCCCCGGUUCGAAUCCGGGCGAGCCCA hit 95 : 11937 11865 (rev) 80.35 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::C::GU+G:::AG+ GGU+A:::CGCC:GCCU++CA GC:GGAG 119 GGGCUCGUGGUCUAGU-GGUuAUGACGCCUGCCUCACACGCAGGAG-------------- 163 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCC:GGUUC+AAUCC:GGC::G::CA 164 ----GuCCCCGGUUCGAAUCCGGGCGAGCCCA--- 191 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1238,sp|AE001088.1|AE001088 Archaeoglobus fulgidus DSM 4304 section 19 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGGGGUUGCCGAGCGGUAAGGCGACGGCCUGCUAAGCCGUUGGGCGUUGCCCGCGUGGGUUCGAAUCCCACCCCCGGCG hit 96 : 8715 8635 (rev) 76.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC::GGU GC::AGC GGUA::GCG:CGGCCU+ +AAGCCG:+GGG GU G 3341 GCCGGGGUUGCCGAGC-GGUAAGGCGACGGCCUGCUAAGCCGUUGGGC----GUUG---- 3391 >>>,,<<<<<_______>>>>>))))))):::: 61 gccgCccGGGUUCAAAUCCCggCcggggCACCA 93 CCGC::GGGUUC+AAUCCC::CC::GGC 3392 CCCGCGUGGGUUCGAAUCCCACCCCCGGCG--- 3421 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1247,sp|AE001097.1|AE001097 Archaeoglobus fulgidus DSM 4304 section 10 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: AGCGGGGUGGGGUAGUCAGGUGAUCCCGGCGGGCUCAUAACCCGCAGAUCCGUGGUUCAAAUCCACGCCCCGCUA hit 97 : 3107 3033 (rev) 71.77 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 ::C::GGU+G:::AG+C GGU A:::CG:CGG:CU+++AA:CCG:AG 8328 AGCGGGGUGGGGUAGUCaGGUgAUCCCGGCGGGCUCAUAACCCGCAG------------- 8374 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 ++CC::GGUUCAAAUCC::GCC::G::A 8375 -----AuCCGUGGUUCAAAUCCACGCCCCGCUA--- 8402 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1250,sp|AE001100.1|AE001100 Archaeoglobus fulgidus DSM 4304 section 7 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: AGCCCCGUGGGGUAGCGGUCAAUCCUGCCGGACUCUGGAUCCGGCGACGCCGGUUCGAAUCCGGCCGGGGCUA hit 98 : 77 149 (fwd) 74.32 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 ::CCC:GU+::::AGC GGU+ A::::GCCGG:CU++ +A:CCGG G 77 AGCCCCGUGGGGUAGC-GGUcaAUCCUGCCGGACUCUGGAUCCGGCG------------- 122 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C:C:GGUUC+AAUCC:G:C:GGG::A 123 -----ACGCCGGUUCGAAUCCGGCCGGGGCUA--- 149 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1251,sp|AE001101.1|AE001101 Archaeoglobus fulgidus DSM 4304 section 6 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCCCGUGGCUCAGCCUGGUUAGAGCGCUCGCCUGAUAAGCGAGAGGUCCGGGGUUCGAACCCCCGCGGGCCCA hit 99 : 2183 2109 (rev) 87.60 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G::CC:GU+GCUCAGCC+GGU+AGAGCGC::GCCU+++AAGC::GAG 8373 GGGCCCGUGGCUCAGCCuGGUuAGAGCGCUCGCCUGAUAAGCGAGAG------------- 8419 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AA CCC:GC:GG::CA 8420 -----GuCCGGGGUUCGAACCCCCGCGGGCCCA--- 8447 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1260,sp|AE001110.1|AE001110 Archaeoglobus fulgidus DSM 4304 section 169 of 172 of the complete genome. ----isReversed: 1 ----hitSequence: GGGGUCGUGGCGUAGCCAGGAAGCGCGGCGGGCUCCAGCGGCGUGAUGAUUGACGGGUCUGCUGAGCGGUGAUGACCCGUUGGAGCUCUGACCCGAAGAGACCCGCCAGUCGUGGGUUCAAAUCCCACCGGCCCCA hit 100 : 3270 3135 (rev) 65.70 bits (((((((,,<<<<____.____>>>>,<<<<<______...................... 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcA...................... 37 G:::::GU+GC::AGCC GG A::GCG:CGG:CU+ + ++ + ++ ++ ++ +++ 6757 GGGGUCGUGGCGUAGCCaGGAAGCGCGGCGGGCUCCAGcggcgugaugauugacgggucu 6816 ........................................_>>>>>,,<<<<<<<____> 38 ........................................AgCCgGaGggcccaaGUAGa 57 + +++ ++ ++ ++ + ++++ ++ ++++++A:CCG: 6817 gcugagcggugaugacccguuggagcucugacccgaagagACCCGCCA------------ 6864 >>>>>>,.,<<<<<_______>>>>>))))))):::: 58 agggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C::GGGUUCAAAUCCC::C:::::CA 6865 ------GuCGUGGGUUCAAAUCCCACCGGCCCCA--- 6892 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1263,sp|AE001113.1|AE001113 Archaeoglobus fulgidus DSM 4304 section 166 of 172 of the complete genome. ----isReversed: 0 ----hitSequence: GCUCUCCUCCCUCCAUUUGAACGUCGCCUUGACGAGGCGAAGGUCCCCGGUUCGAAUCCGGGCGAGCCCA hit 101 : 3566 3635 (fwd) 27.35 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G C:: U UC + + GA G:CG:C U++C+AG:CG:AG 3566 GCUCUCCUCCCUCCAUUu----GAACGUCGCCUUGACGAGGCGAAG-------------- 3607 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCC:GGUUC+AAUCC:GG ::G CA 3608 ----GuCCCCGGUUCGAAUCCGGGCGAGCCCA--- 3635 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1273,sp|AE004978.1|AE004978 Halobacterium sp. NRC-1 section 9 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGCCUUAGCUCAGACUGGGAGAGCACUCGACUGAAGAUCGAGCUGUCCCUGGUUCAAAUCCGGGAGGCGGCA hit 102 : 8658 8585 (rev) 74.28 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 GCC:C::UAGCUCAG C+GG AGAGC C::G:CU++ +A:C::G 1724 GCCGCCUUAGCUCAGACuGGGAGAGCACUCGACUGAAGAUCGAGCU-------------- 1769 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCC:GGUUCAAAUCC:GG::G:GGCA 1770 ----GuCCCUGGUUCAAAUCCGGGAGGCGGCA--- 1797 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1274,sp|AE004979.1|AE004979 Halobacterium sp. NRC-1 section 10 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GGGUUCGUGGUCUAGUCGGUCAUGACGCGGCCUUUACAAGGCCGAGGUCGGUGGUUCGAAUCCGCCCGAACCCA hit 103 : 6468 6395 (rev) 74.98 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G:::::GU+G:::AG+CGGU+A:::CGC:G:C UU+CAAG:C:GAG 4205 GGGUUCGUGGUCUAGUCGGUcAUGACGCGGCCUUUACAAGGCCGAG-------------- 4250 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:::GGUUC+AAUCC:::C:::::CA 4251 ----GuCGGUGGUUCGAAUCCGCCCGAACCCA--- 4278 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1275,sp|AE004980.1|AE004980 Halobacterium sp. NRC-1 section 11 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCCUUAGCUUAGUCCGGUUCAAAGCCCCCGGCUCAUAUCAGUGCCGUCGCAUGCGGCGGCGCUGUGGGACACCGGGUGAGCGGUGGUUCAAAUCCGCCAGGGCCCA hit 104 : 7739 7847 (fwd) 60.73 bits (((((((,,<<<<____.___.._>>>>,<<<<<______.................... 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcA.................... 37 G::CC::UAGCU AG+C GGU++A AGC CC:G:CU+++A ++ + + + + + ++ 7739 GGGCCCUUAGCUUAGUCcGGUucAAAGCCCCCGGCUCAUAucagugccgucgcaugcggc 7798 ............._>>>>>,,<<<<<<<____>>>>>>>,.,<<<<<_______>>>>>) 38 .............AgCCgGaGggcccaaGUAGaagggccg.CccGGGUUCAAAUCCCggC 83 ++ + + ++++ A:C:GG+G + C:::GGUUCAAAUCC:::: 7799 ggcgcugugggacACCGGGUG------------------AgCGGUGGUUCAAAUCCGCCA 7840 )))))):::: 84 cggggCACCA 93 :GG::CA 7841 GGGCCCA--- 7847 ----endhit ----hitSequence: GCCGCCAUAGCUCAGUUGGUAGAGCACGUGGUUGUUACCCACGUUGUCCCAGGUUCGAGCCCUGGUGGCGGCG hit 105 : 7577 7649 (fwd) 63.25 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC:C::UAGCUCAG+ GGUAGAGC C::G: U+++A :C::G+ 7577 GCCGCCAUAGCUCAGUUGGUAGAGCACGUGGUUGUUACCCACGUU--------------- 7621 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCC:GGUUC+A CC:GG::G:GGC 7622 ---GuCCCAGGUUCGAGCCCUGGUGGCGGCG--- 7649 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1275,sp|AE004980.1|AE004980 Halobacterium sp. NRC-1 section 11 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GUCCGGAUAGGGUAGUGGACUAUCCUCUUGGCUUGCGGAGCCAGGGACCGGCGUUCAAAUCGCCGUCCGGACG hit 106 : 3043 2971 (rev) 50.22 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G:CC:G:UA::::AG+ GG ++A:::: ::GGC U+ +AGCC:: G 7135 GUCCGGAUAGGGUAGU-GGAcuAUCCUCUUGGCUUGCGGAGCCAGGG------------- 7180 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CC:G GUUCAAAUC C:G:C:GG:C 7181 -----ACCGGCGUUCAAAUCGCCGUCCGGACG--- 7207 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1280,sp|AE004985.1|AE004985 Halobacterium sp. NRC-1 section 16 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: CCGCCCUUAGCUCAGACUGGUAGAGCAGUCGACUGUAGAUCGACUUGCCCCCCGUUCAAAUCGGGGAGGGCGGA hit 107 : 754 827 (fwd) 64.55 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 C:CC::UAGCUCAG C+GGUAGAGC :::G:CU++ +A:C:::+ 754 CCGCCCUUAGCUCAGACuGGUAGAGCAGUCGACUGUAGAUCGACUU-------------- 799 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CCC: GUUCAAAUC :GG::GG:G A 800 ----GcCCCCCGUUCAAAUCGGGGAGGGCGGA--- 827 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1282,sp|AE004987.1|AE004987 Halobacterium sp. NRC-1 section 18 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GCCGAGGUAGCCUAGCCUGGCCAAGGCGGUUGCUUCGAGAGCAACUGUCCACACGGACUCAGGAGUUCAAAUCUCCUCCUCGGCG hit 108 : 4240 4324 (fwd) 62.46 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GCC::GGUAGC: AGCC+GG++A :GCG:::GC U+G +AGC:::+G::C 4240 GCCGAGGUAGCCUAGCCuGGCcAAGGCGGUUGCUUCGAGAGCAACUGUCCAC-------- 4291 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C::G:GUUCAAAUC:C::CC::GGC 4292 ACGGACuCAGGAGUUCAAAUCUCCUCCUCGGCG--- 4324 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1299,sp|AE005004.1|AE005004 Halobacterium sp. NRC-1 section 35 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: AGUCCCGUGGUGUAGUGGCCAAUCAUAUGGGCCUUUGGAGCCCACGACGGCGGUUCGAAUCCGCCCGGGACUA hit 109 : 9410 9482 (fwd) 61.86 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 :::CC:GU+::::AG+ GG++ A:::: ::GGCCUU+ +AGCC:: G 9410 AGUCCCGUGGUGUAGU-GGCcaAUCAUAUGGGCCUUUGGAGCCCACG------------- 9455 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C:::GGUUC+AAUCC:::C:GG:::A 9456 -----ACGGCGGUUCGAAUCCGCCCGGGACUA--- 9482 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1301,sp|AE005006.1|AE005006 Halobacterium sp. NRC-1 section 37 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: AGCGGGAUGGGAUAGCCAGGAGAUUCCGCCGGGCUCAUAACCCGGAGAUCGGUAGUUCAAAUCUACCUCCCGCUA hit 110 : 8493 8419 (rev) 63.10 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 ::C::G:U+G: :AGCC GG A: :CGCCGG:CU+++AA:CCGGAG 4791 AGCGGGAUGGGAUAGCCaGGAgAUUCCGCCGGGCUCAUAACCCGGAG------------- 4837 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 ++C::::GUUCAAAUC:::::C::G::A 4838 -----AuCGGUAGUUCAAAUCUACCUCCCGCUA--- 4865 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1304,sp|AE005009.1|AE005009 Halobacterium sp. NRC-1 section 40 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCGCUUAGCUCAGCUUGGACAGAGCACUUGGCUUCGGACCAAGAUGCCGCGGGUUCAAAUCCUGCAGCGCCCA hit 111 : 8464 8538 (fwd) 72.48 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G::C:::UAGCUCAGC +GG +AGAGC C::G:CUU +A:C::GA 8464 GGGCGCUUAGCUCAGCUuGGAcAGAGCACUUGGCUUCGGACCAAGAU------------- 8510 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:C GGUUCAAAUCC G::::G::CA 8511 -----GcCGCGGGUUCAAAUCCUGCAGCGCCCA--- 8538 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1316,sp|AE005021.1|AE005021 Halobacterium sp. NRC-1 section 52 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCUCGUAGAUCAGUGGUAGAUCAUCCCCCUGGCACGGGGAAGGCCUCGGGUUCAAAUCCCGACGAGUCCA hit 112 : 6115 6186 (fwd) 70.00 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::C::GUAG UCAG+ GGUAGA C :C::CCU+GCA G::G:AG 6115 GGGCUCGUAGAUCAGU-GGUAGAUCAUCCCCCUGGCACGGGGAAG--------------- 6158 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CGGGUUCAAAUCCCG:C::G::CA 6159 ---GcCUCGGGUUCAAAUCCCGACGAGUCCA--- 6186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1317,sp|AE005022.1|AE005022 Halobacterium sp. NRC-1 section 53 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCGUGUGGCCAAGCGGACACGGCGAGAGGUUCCUAACCUCUAGAUCGCGGGUUCGAGUCCCGCCACGCCCG hit 113 : 5045 4973 (rev) 66.44 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::C::GU+GC::AGC GG +A::GCG:::G: U+ +AA:C:::AG 6471 GGGCGUGUGGCCAAGC-GGAcACGGCGAGAGGUUCCUAACCUCUAG-------------- 6515 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 ++C:CGGGUUC+A UCCCG:C::G::C 6516 ----AuCGCGGGUUCGAGUCCCGCCACGCCCG--- 6543 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1319,sp|AE005024.1|AE005024 Halobacterium sp. NRC-1 section 55 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCGCCGGUAGUCUAGUGGUAGGACCUGAGCCUUCCAAGCUCAUGGCCCGGGUUCAAAUCCCGGUCGGCGCA hit 114 : 166 96 (rev) 72.11 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GC:CCG:UAG:::AG+ GGUA:::C :::GCCUU CAAGC:::+G 12159 GCGCCGGUAGUCUAGU-GGUAGGACCUGAGCCUUCCAAGCUCAUG--------------- 12202 >>>,,<<<<<_______>>>>>))))))):::: 61 gccgCccGGGUUCAAAUCCCggCcggggCACCA 93 GCCCGGGUUCAAAUCCCGG:CGG:GCA 12203 ---GCCCGGGUUCAAAUCCCGGUCGGCGCA--- 12229 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1329,sp|AE005034.1|AE005034 Halobacterium sp. NRC-1 section 65 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCGGUAGCUCAGUCUGGCAGAGCGACGGACUCUUAAUCCGUCGGUCGCGUGUUCAAAUCGCGCCCGGCCCG hit 115 : 4261 4334 (fwd) 86.03 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CCGGUAGCUCAG+C+GG+AGAGCG:CGG:CU+++AA:CCG: G 4261 GGGCCGGUAGCUCAGUCuGGCAGAGCGACGGACUCUUAAUCCGUCG-------------- 4306 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:CG:GUUCAAAUC:CG:CCGG::C 4307 ----GuCGCGUGUUCAAAUCGCGCCCGGCCCG--- 4334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1331,sp|AE005036.1|AE005036 Halobacterium sp. NRC-1 section 67 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGGCUGUGGCCAAGCCAGGCAUGGCGACUGACUCCAGAGGCCCGCGCCCGGGACGACGCUCCAGACUGGUAUACCGAGCGGCCGACUGAUCAUCGGUCCGCUGUGACGACCCUCUGGAGUUCCGAGGCGCACCGGAGAUAUCAGUCGAUCGGGGGUUCAAAUCCCUCCGGCCCCA hit 116 : 4845 5020 (fwd) 56.26 bits (((((((,,<<<<____.____>>>>,<<<<<______...................... 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcA...................... 37 G:::C:GU+GC::AGCC GG+A::GCG:C:G:CU+ ++++ + + ++++ ++ + 4845 GGGGCUGUGGCCAAGCCaGGCAUGGCGACUGACUCCAGaggcccgcgcccgggacgacgc 4904 ............................................................ - ............................................................ - +++ ++ + + +++ ++ ++ ++ + ++ + + ++ ++ ++++ 4905 uccagacugguauaccgagcggccgacugaucaucgguccgcugugacgacccucuggag 4964 ...................._>>>>>,,<<<<<<<____>>>>>>>,.,<<<<<______ 38 ....................AgCCgGaGggcccaaGUAGaagggccg.CccGGGUUCAAA 76 ++++ + + +++++ A:C:G: G ++C: GGGUUCAAA 4965 uuccgaggcgcaccggagauAUCAGUCG------------------AuCGGGGGUUCAAA 5006 _>>>>>))))))):::: 77 UCCCggCcggggCACCA 93 UCCC :C:G:::CA 5007 UCCCUCCGGCCCCA--- 5020 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1337,sp|AE005042.1|AE005042 Halobacterium sp. NRC-1 section 73 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GCCGGUGUAGCUCAGCGGUAGAGCGAUUCCUUCGUAAGGAAUAGGCCGAGGGUUCAAAUCCCUCCACCGGCU hit 117 : 7993 8064 (fwd) 74.36 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC:::GUAGCUCAGC GGUAGAGCG::::C U+G+AAG::::AG 7993 GCCGGUGUAGCUCAGC-GGUAGAGCGAUUCCUUCGUAAGGAAUAG--------------- 8036 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C::GGGUUCAAAUCCC::C:::GGC 8037 ---GcCGAGGGUUCAAAUCCCUCCACCGGCU--- 8064 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1338,sp|AE005043.1|AE005043 Halobacterium sp. NRC-1 section 74 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GUCGUGGUAGCCUAGCCUGGUCAAGGCGCAGGGUUGCUAACUCUGUGGCGUAAGCCUCCGGGGUUCAAAUCCCCGCCACGACG hit 118 : 4652 4734 (fwd) 69.78 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G:C::GGUAGC: AGCC+GGU+A :GCGC:G : U+ +AA: C:G+ GGC GUA+ 4652 GUCGUGGUAGCCUAGCCuGGUcAAGGCGCAGGGUUGCUAACUCUGU-GGC----GUAA-- 4704 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 GCC CC:GGGUUCAAAUCCC:GCC::G:C 4705 --GCCUCCGGGGUUCAAAUCCCCGCCACGACG--- 4734 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1338,sp|AE005043.1|AE005043 Halobacterium sp. NRC-1 section 74 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GCAGGGAUAGCCAAGUUUGGCCAAAGGCGCAGCGUUCAGGGCGCUGUCCCGUAGGGGUUCGCAGGUUCAAAUCCUGCUCCCUGCA hit 119 : 7054 7138 (fwd) 64.43 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GC:::G:UAGC::AG+ +GG++ A::GCGC:G:: U++ + ::C:G+ ::C GUAG 7054 GCAGGGAUAGCCAAGUUuGGCcaAAGGCGCAGCGUUCAGGGCGCUGU-CCC----GUAG- 7107 >>>>>>,.,<<<<<_______>>>>>))))))):::: 58 agggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C:C:GGUUCAAAUCC:G::C:::GCA 7108 ---GGGUuCGCAGGUUCAAAUCCUGCUCCCUGCA--- 7138 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1343,sp|AE005048.1|AE005048 Halobacterium sp. NRC-1 section 79 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GGUGAGGUGGCAGAGCGGCCUAUUGCGCCGGUCUUGAAAACCGGUGGCGUCACGCCUCCUGGGUUCGAAUCCCAGCCUCACCG hit 120 : 8615 8533 (rev) 58.38 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____.> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAG.a 57 G::::GGU+GC AGC GG+++A GCGCCGG:CUUG AA:CCGG+ GGC GU + 1611 GGUGAGGUGGCAGAGC-GGCcuAUUGCGCCGGUCUUGAAAACCGGU-GGC----GUCAc- 1663 >>>>>>,,<<<<<_______>>>>>))))))):::: 58 agggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 GCC CC:GGGUUC+AAUCCC:GCC::::C 1664 ---GCCUCCUGGGUUCGAAUCCCAGCCUCACCG--- 1693 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1343,sp|AE005048.1|AE005048 Halobacterium sp. NRC-1 section 79 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCCAAGGGAGCUUGGGUGGUCCAAGCACUCGAUUUGUAAUCGAGAGUUCGUGGGUUCAAAUCCCACCCUUGGCU hit 121 : 4638 4565 (rev) 50.88 bits (((((((,,<<<<_..______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____ 1 GccccgGUAGcucA..GCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAG 56 GCC::GG AGCU G+ GGU++A AGC C::G: UUG+AA:C::GAG 5588 GCCAAGGGAGCUU-ggGU-GGUccA-AGCACUCGAUUUGUAAUCGAGAG----------- 5633 >>>>>>>,.,<<<<<_______>>>>>))))))):::: 57 aagggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 +C::GGGUUCAAAUCCC::CC::GGC 5634 -------UuCGUGGGUUCAAAUCCCACCCUUGGCU--- 5661 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1349,sp|AE005054.1|AE005054 Halobacterium sp. NRC-1 section 85 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GCUCGGUUGGUGUAGUCCGGCCAAUCAUGUUGGCCUUUCGAGCCGACGACCAGGGUUCAAAUCCCUGACCGAGCA hit 122 : 78 152 (fwd) 68.73 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GC:C:G:U+::::AG+C GG++ A::::G: GGCCUU+C+AGCC : G 78 GCUCGGUUGGUGUAGUCcGGCcaAUCAUGUUGGCCUUUCGAGCCGACG------------ 125 >>>>>>,,<<<<<_______>>>>>))))))):::: 58 agggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CC:GGGUUCAAAUCCC:G:C:G:GCA 126 ------ACCAGGGUUCAAAUCCCUGACCGAGCA--- 152 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1349,sp|AE005054.1|AE005054 Halobacterium sp. NRC-1 section 85 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCUCCGUUGGUGUAGUCCGGCCAAUCAUCUUGCCCUCUCACGGCAAGGACUAGGGUUCAAAUCCCUGACGGAGCA hit 123 : 7934 7860 (rev) 59.86 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GC:CCG:U+::::AG+C GG++ A:::: ::G:CCU++CA G:C:: G 2240 GCUCCGUUGGUGUAGUCcGGCcaAUCAUCUUGCCCUCUCACGGCAAGG------------ 2287 >>>>>>,,<<<<<_______>>>>>))))))):::: 58 agggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C::GGGUUCAAAUCCC:::CGG:GCA 2288 ------ACUAGGGUUCAAAUCCCUGACGGAGCA--- 2314 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1352,sp|AE005057.1|AE005057 Halobacterium sp. NRC-1 section 88 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCGAGGGUAGCCAAGCUCGGCCAACGGCGACGGACUCAAGAUCCGUUCUCGUAGGAGUUCGAGGGUUCGAAUCCCUUCCCUCGCA hit 124 : 8124 8040 (rev) 69.44 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GC:::GGUAGC::AGC GG++ A::GCG:CGG:CU++ +A:CCG:+ ::C GUAG 7713 GCGAGGGUAGCCAAGCUcGGCcaACGGCGACGGACUCAAGAUCCGUU-CUC----GUAG- 7766 >>>>>>,.,<<<<<_______>>>>>))))))):::: 58 agggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C+:GGGUUC+AAUCCC:+CC:::GCA 7767 ---GAGUuCGAGGGUUCGAAUCCCUUCCCUCGCA--- 7797 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1353,sp|AE005058.1|AE005058 Halobacterium sp. NRC-1 section 89 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCGCGGGUAGCCAAGCCAGGAAACGGCGUAGCGCUUAGGACGCUAUCCCGUAGGGGUCCGCCGGUUCAAAUCCGGUCCCGCGCA hit 125 : 178 95 (rev) 71.47 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC:C:GGUAGC::AGCC GG A::GCG::G::CUU+ +A::C::+ ::C GUAG 11916 GCGCGGGUAGCCAAGCCaGGAaACGGCGUAGCGCUUAGGACGCUAU-CCC----GUAG-- 11968 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C+C:GGUUCAAAUCC:G+CC:G:GCA 11969 --GGGUcCGCCGGUUCAAAUCCGGUCCCGCGCA--- 11999 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1359,sp|AE005064.1|AE005064 Halobacterium sp. NRC-1 section 95 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCGUGGGUAGCCGAGCUAGGUCAAAGGCGCAGCGUUGAGGGCGCUGUCCUGUAGAGGUUCGCCGGUUCGAAUCCGGUCCCACGCA hit 126 : 3556 3472 (rev) 64.86 bits (((((((,,<<<<____.___.._>>>>,<<<<<_______>>>>>,,<<<<<<<____> 1 GccccgGUAGcucAGCC.GGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGa 57 GC:::GGUAGC::AGC GGU+ A::GCGC:G:: U++ + ::C:G+ ::: GUAG 14130 GCGUGGGUAGCCGAGCUaGGUcaAAGGCGCAGCGUUGAGGGCGCUGU-CCU----GUAG- 14183 >>>>>>,.,<<<<<_______>>>>>))))))):::: 58 agggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 ::: +C+C:GGUUC+AAUCC:G+CC:::GCA 14184 ---AGGUuCGCCGGUUCGAAUCCGGUCCCACGCA--- 14214 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1362,sp|AE005067.1|AE005067 Halobacterium sp. NRC-1 section 98 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GGGUCGGUGGUCUAGUCCGGUUAUGACGGCUCCUUCACACGGAGCAGGUCGGCGGUUCAACUCCGCCCCGACCCA hit 127 : 9840 9766 (rev) 70.05 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G:::CGGU+G:::AG+C GGU+A:::CG:C::C U++CA G::G:AG 141 GGGUCGGUGGUCUAGUCcGGUuAUGACGGCUCCUUCACACGGAGCAG------------- 187 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:::GGUUCAA UCC:::CCG:::CA 188 -----GuCGGCGGUUCAACUCCGCCCCGACCCA--- 215 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1368,sp|AE005073.1|AE005073 Halobacterium sp. NRC-1 section 104 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCCCGGGUGGCUUAGCUGGUCAUAGCGCCGCACUCAUAGGGUAUCGAGCUUCGGUGCGGCAUCCCACUGCCACGUGGAUGCUCAGCAUGUCCGCGAGGCCCGCCGAGCCUCGAACCUGGGACAUGCGGAGAUCGAGGGUUCAAAACCCUCCCCGGGCA hit 128 : 6178 6021 (rev) 61.50 bits (((((((,,<<<<_______._>>>>,<<<<<______...................... 1 GccccgGUAGcucAGCCGGu.AgagCGCcGGcCUugcA...................... 37 GCCC:GGU+GCU:AGC GGU+A:AGCGCCG::CU+++A+++ + +++ ++ + ++ 5844 GCCCGGGUGGCUUAGCUGGUcAUAGCGCCGCACUCAUAggguaucgagcuucggugcggc 5903 ............................................................ - ............................................................ - + + + + + +++ + ++ + + + ++++ + +++ +++ +++ 5904 aucccacugccacguggaugcucagcauguccgcgaggcccgccgagccucgaaccuggg 5963 .._>>>>>,,<<<<<<<____>>>>>>>,.,<<<<<_______>>>>>))))))):::: 38 ..AgCCgGaGggcccaaGUAGaagggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 + A::CGGAG ++C::GGGUUCAAA CCC::CC:GGGCA 5964 acAUGCGGAG------------------AuCGAGGGUUCAAAACCCUCCCCGGGCA--- 6001 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1369,sp|AE005074.1|AE005074 Halobacterium sp. NRC-1 section 105 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGUUGGUGGUCUAGUCAGGCUAUGACACCUCCUUGACAUGGAGGAGGUCGGCGGUUCAAAUCCGCCCCAACCCA hit 129 : 4419 4493 (fwd) 69.70 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G::::GGU+G:::AG+C GG++A:::C CC::C U++CA G::GGAG 4419 GGGUUGGUGGUCUAGUCaGGCuAUGACACCUCCUUGACAUGGAGGAG------------- 4465 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C:::GGUUCAAAUCC:::CC::::CA 4466 -----GuCGGCGGUUCAAAUCCGCCCCAACCCA--- 4493 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1372,sp|AE005077.1|AE005077 Halobacterium sp. NRC-1 section 108 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCGCUGGUAGUGUAGUGGUAUCACGUGACCUUGCCAUGGUCACAACCUGGGUUCAAAUCCCAGCCAGCGCA hit 130 : 153 83 (rev) 62.22 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GC:C:GGUAG:::AG+ GGUA:::CG::::C U+ CA G:::: 14473 GCGCUGGUAGUGUAGU-GGUAUCACGUGACCUUGCCAUGGUCACA--------------- 14516 >>>,,<<<<<_______>>>>>))))))):::: 61 gccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CC:GGGUUCAAAUCCC:GCC:G:GCA 14517 ---ACCUGGGUUCAAAUCCCAGCCAGCGCA--- 14543 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1373,sp|AE005078.1|AE005078 Halobacterium sp. NRC-1 section 109 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGACCGUGGGGUAGCGGUAUCCUCGGCGCAUGGGGUGCGUCGGACUCGAGUUCGAAUCUCGACGGUCCCA hit 131 : 6888 6958 (fwd) 47.58 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G:::C:GU+::::AGC GGUA:::: : :GC U+G + GC: : G 6888 GGGACCGUGGGGUAGC-GGUAUCCUCGGCGCAUGGGGUGCGUCGG--------------- 6931 >>>,,<<<<<_______>>>>>))))))):::: 61 gccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C:CG:GUUC+AAUC:CG:C:G:::CA 6932 ---ACUCGAGUUCGAAUCUCGACGGUCCCA--- 6958 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1384,sp|AE005089.1|AE005089 Halobacterium sp. NRC-1 section 120 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGUCAGUAGCUCAACUAGGUAGAGCGCCACUCUGAUAAGGUGGAGGCUUGCGGUUCAAAUCCGCACUGACCCA hit 132 : 6614 6687 (fwd) 59.84 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G:::C:GUAGCUCA C GGUAGAGCGCC:: CU+++AA ::GGAG 6614 GGGUCAGUAGCUCAACUaGGUAGAGCGCCACUCUGAUAAGGUGGAG-------------- 6659 >>>>,.,<<<<<_______>>>>>))))))):::: 60 ggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+ :::GGUUCAAAUCC:::C:G:::CA 6660 ----GcUUGCGGUUCAAAUCCGCACUGACCCA--- 6687 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1385,sp|AE005090.1|AE005090 Halobacterium sp. NRC-1 section 121 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GCGAGGGUGGCCGAGCGGCCAAAGGCGGCGGGCUUAAGACCCGCUCCCGUAGGGGUUCGUGGGUUCGAAUCCCACCUCUCGCA hit 133 : 70 152 (fwd) 69.85 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 GC::: GU+GC::AGC GG++ A::GCG:CGG:CUU+ +A:CCG:+ ::C GUAG 70 GCGAGGGUGGCCGAGC-GGCcaAAGGCGGCGGGCUUAAGACCCGCU-CCC----GUAG-- 121 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G:: +C::GGGUUC+AAUCCC::C :::GCA 122 --GGGUuCGUGGGUUCGAAUCCCACCUCUCGCA--- 152 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1388,sp|AE005093.1|AE005093 Halobacterium sp. NRC-1 section 124 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCCGGUGGGGUAGCUUGGUAUCCUUCGGCCUUCGGGUGGCCGUAACCGCGAUUCGAAUUCGCGCCGGCCCA hit 134 : 3236 3164 (rev) 59.60 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G::CCGGU+::::AGC +GGUA:::: C:G:C U+G + G:C:G+ 9190 GGGCCGGUGGGGUAGCUuGGUAUCCUUCGGCCUUCGGGUGGCCGUA-------------- 9235 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CC::G:UUC+AAU:C::GCCGG::CA 9236 ----ACCGCGAUUCGAAUUCGCGCCGGCCCA--- 9262 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1391,sp|AE005096.1|AE005096 Halobacterium sp. NRC-1 section 127 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GCCUGGGUAGCUUAGCGGUAAAGCGCGUCCUUGGUAAGGACGAGACCCCGGAUUCAAAUUCCGGCCUAGGCU hit 135 : 6451 6522 (fwd) 65.68 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC: GGUAGCU AGC GGUA AGCGC:::C U+G+AAG:::GAG 6451 GCCUGGGUAGCUUAGC-GGUAAAGCGCGUCCUUGGUAAGGACGAG--------------- 6494 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 ++CCCGG:UUCAAAU:CCGGCC :GGC 6495 ---AcCCCGGAUUCAAAUUCCGGCCUAGGCU--- 6522 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1391,sp|AE005096.1|AE005096 Halobacterium sp. NRC-1 section 127 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCGCUGGUGGUCUAGUGGUAGGACAUGAGCUUCCCAAGCUCAUAGCCCGGGUUCAAUUCCCGGCCAGCGCA hit 136 : 4072 4002 (rev) 65.26 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GC:C:GGU+G:::AG+ GGUA:::C :::GC U+ CAAGC:::+ 9113 GCGCUGGUGGUCUAGU-GGUAGGACAUGAGCUUCCCAAGCUCAUA--------------- 9156 >>>,,<<<<<_______>>>>>))))))):::: 61 gccgCccGGGUUCAAAUCCCggCcggggCACCA 93 GCCCGGGUUCAA UCCCGGCC:G:GCA 9157 ---GCCCGGGUUCAAUUCCCGGCCAGCGCA--- 9183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1394,sp|AE005099.1|AE005099 Halobacterium sp. NRC-1 section 130 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GCCGGGAUGGCCGAAUGGCAAAGCGCACGCCUGGAAAGCGUGUCCCCUUACGGGGUUCAGGGUUCAAAUCCCUGUCCCGGCG hit 137 : 8025 7944 (rev) 56.38 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 GCC::G:U+GC :A + GG+A: GCGC::GCCU+G AAGC::G+ ::C UA 3895 GCCGGGAUGGCCGAAU-GGCAAAGCGCACGCCUGGAAAGCGUGUCCCC----UUAC---- 3945 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G::G+ C:GGGUUCAAAUCCC:G:C::GGC 3946 GGGGuUCAGGGUUCAAAUCCCUGUCCCGGCG--- 3976 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1399,sp|AE005104.1|AE005104 Halobacterium sp. NRC-1 section 135 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: UCCGGGGUAGGGUAGUGGACUAUCCUUCAGCCUUGUGGAGGCUGAGACGCGGGUUCGAUUCUCGCCCCUGGAC hit 138 : 5168 5240 (fwd) 46.60 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 :CC :GGUA::::AG+ GG ++A:::: C:G:C U++ +AG:C:GAG 5168 UCCGGGGUAGGGUAGU-GGAcuAUCCUUCAGCCUUGUGGAGGCUGAG------------- 5213 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C:CG GUUC+A UC CG:CC: GG: 5214 -----ACGCGGGUUCGAUUCUCGCCCCUGGAC--- 5240 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1400,sp|AE005105.1|AE005105 Halobacterium sp. NRC-1 section 136 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGACUGUAGGGUAGCUUGGUAUCCUUCGGGCCUUGGGUGCCCGUGACCCCGAUUCAAAUUCGGGCGGUCCCA hit 139 : 2061 2133 (fwd) 63.72 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,<<<<<<<____>>> 1 GccccgGUAGcucAGCC.GGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaag 59 G:::C:GUA::::AGC +GGUA:::: C:GGCCUUG + GCC:G+G 2061 GGGACUGUAGGGUAGCUuGGUAUCCUUCGGGCCUUGGGUGCCCGUG-------------- 2106 >>>>,,<<<<<_______>>>>>))))))):::: 60 ggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +CCC:G:UUCAAAU:C:GGC:G:::CA 2107 ----ACCCCGAUUCAAAUUCGGGCGGUCCCA--- 2133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1414,sp|AE005119.1|AE005119 Halobacterium sp. NRC-1 section 150 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: AGUCCCGUAGGGUAGUGGCCAAUCCUGAAGCCUUCUGGGGGCUUCGACGGAAGUUCGAAUCUUCCCGGGACUA hit 140 : 4428 4356 (rev) 50.49 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCCGGu..AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 :::CC:GUA::::AG+ GG++ A::::G::G:C U++ + G:C:: G 7440 AGUCCCGUAGGGUAGU-GGCcaAUCCUGAAGCCUUCUGGGGGCUUCG------------- 7485 >>>>>,,<<<<<_______>>>>>))))))):::: 59 gggccgCccGGGUUCAAAUCCCggCcggggCACCA 93 +C::::GUUC+AAUC::::C:GG:::A 7486 -----ACGGAAGUUCGAAUCUUCCCGGGACUA--- 7512 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1420,sp|AE005125.1|AE005125 Halobacterium sp. NRC-1 section 156 of 170 of the complete genome. ----isReversed: 1 ----hitSequence: GGGCGCGUAGCUCAGUCCGGACAGAGCGUUCGGCUUCUAACCGAAAUGUCGGGGGUUCGAAUCCCCUCGUGCCCG hit 141 : 352 278 (rev) 73.82 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,<<<<<<<____>> 1 GccccgGUAGcucAGCC.GGu.AgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaa 58 G::C :GUAGCUCAG+C GG +AGAGCG:::G:CUU +AA:C:::A 14640 GGGCGCGUAGCUCAGUCcGGAcAGAGCGUUCGGCUUCUAACCGAAAU------------- 14686 >>>>>,.,<<<<<_______>>>>>))))))):::: 59 gggccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+C+:GGGUUC+AAUCCC:+C: G::C 14687 -----GuCGGGGGUUCGAAUCCCCUCGUGCCCG--- 14714 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1423,sp|AE005128.1|AE005128 Halobacterium sp. NRC-1 section 159 of 170 of the complete genome. ----isReversed: 0 ----hitSequence: GGGCCCAUAGCUCAGUGGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGGGUCCA hit 142 : 2987 3058 (fwd) 79.40 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>> 1 GccccgGUAGcucAGCCGGuAgagCGCcGGcCUugcAAgCCgGaGggcccaaGUAGaagg 60 G::CC::UA:CUCAG+ GGUAGAG:GCC::C UUGCAAG::GGA 2987 GGGCCCAUAGCUCAGU-GGUAGAGUGCCUCCUUUGCAAGGAGGAU--------------- 3030 >>>,.,<<<<<_______>>>>>))))))):::: 61 gccg.CccGGGUUCAAAUCCCggCcggggCACCA 93 G+CC:GGGUUC+AAUCCC:G::GG::CA 3031 ---GcCCUGGGUUCGAAUCCCAGUGGGUCCA--- 3058 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/archaea.fasta.gz ----sequence: #1423,sp|AE005128.1|AE005128 Halobacterium sp. NRC-1 section 159 of 170 of the complete genome. ----isReversed: 0 ----hitSequence