Params: ./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-ESELC.cm @/projects/bio6/zasha/seqs/genomes/human/human_nuclear_assembled.list 1 hmm data/tRNAscan/tRNAscan-ESELC-fwdinf-hmmtype1.bin 
Build: release
Host: bicycle.cs.washington.edu
pid: 11386
----hmm-from-cmFileName: tRNAscan-ESELC.cm
----hmm-build-info: ;(default construction of HMM) Params: --no-insert-hack --cm2hmm-set-node-combiner-forward-inf tRNAscan-ESELC.cm 1 1 100000 1  Build: release Host: SERENA ;Params: --no-insert-hack --cm2hmm-set-node-combiner-forward-inf tRNAscan-ESELC.cm 1 1 100000 1  Build: release Host: SERENA 
----cmFile: data/tRNAscan/tRNAscan-ESELC.cm (global)
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr1.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr2.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr3.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr4.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr5.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr6.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr7.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr8.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr9.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr10.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr11.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr12.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr13.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr14.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr15.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr16.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr17.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr18.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr19.fa.gz

----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr19.fa.gz
----sequence: #0,emb|chr19| 
----isReversed: 1
----hitSequence: GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACAGAGUGGUUCAAUUCCACCUUUCGGGC
hit 0   : 50673785 50673700 (rev)    75.99 bits
           (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>><<<<<<____>>>>
         1 gcccggaugAuccucagUGGUcuggggugcaggCUUCAAAccuguagcugucUAGCgaca 60      
           GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACA
  13137867 GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACA 13137926

           >><<<<_______>>>>)))))))))
        61 gaguggUUCAAUUccaccuuucgggc 86      
           GAGUGGUUCAAUUCCACCUUUCGGGC
  13137927 GAGUGGUUCAAUUCCACCUUUCGGGC 13137952

----endhit
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr20.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr21.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr22.fa.gz

----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chr22.fa.gz
----sequence: #0,emb|chr22| 
----isReversed: 0
----hitSequence: GCUCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGUGACAGAGUGGUUCAAUUCCACCUUUGUAGG
hit 1   : 42804837 42804922 (fwd)    62.60 bits
           (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>><<<<<<____>>>>
         1 gcccggaugAuccucagUGGUcuggggugcaggCUUCAAAccuguagcugucUAGCgaca 60      
           +C:  GAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAG GACA
  42804837 GCUCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGUGACA 42804896

           >><<<<_______>>>>)))))))))
        61 gaguggUUCAAUUccaccuuucgggc 86      
           GAGUGGUUCAAUUCCACCUUU  :G+
  42804897 GAGUGGUUCAAUUCCACCUUUGUAGG 42804922

----endhit
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chrX.fa.gz
----fastaFile: /projects/null/bio6/zasha/seqs/genomes/human/chrY.fa.gz

Found 2 hits.

done 6.14026e+09 nucs (frac lets thru so far=1.00484e-07, 2d-fracLetsThru=-6.80401e-06).
Filter report: done 6.14026e+09 nucs (frac lets thru so far=1.00484e-07, 2d-fracLetsThru=-6.80401e-06).

FULL: done 6.14026e+09 nucs (frac lets thru so far=1.00484e-07, 2d-fracLetsThru=-6.80401e-06).

CPU time: 148347.68u 66.45s 41:13:34.13 Elapsed: 41:12:54