Params: ./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-ESELC.cm /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta 1 hmm data/tRNAscan/tRNAscan-ESELC-fwdinf-hmmtype1.bin 
Build: release
Host: gattaca.cs.washington.edu
pid: 1538
----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta
----hmm-from-cmFileName: tRNAscan-ESELC.cm
----hmm-build-info: ;(default construction of HMM) Params: --no-insert-hack --cm2hmm-set-node-combiner-forward-inf tRNAscan-ESELC.cm 1 1 100000 1  Build: release Host: SERENA ;Params: --no-insert-hack --cm2hmm-set-node-combiner-forward-inf tRNAscan-ESELC.cm 1 1 100000 1  Build: release Host: SERENA 
----cmFile: data/tRNAscan/tRNAscan-ESELC.cm (global)

----fastaFile: /projects/bio6/zasha/seqs/genomes/D_melanogaster/D_melanogaster.fasta
----sequence: #0,emb|AE013599| Drosophila melanogaster chromosome 2R, complete sequence.
----isReversed: 1
----hitSequence: GCCCCACUGAACUUCGGUGGUCCGGGGUGCGGACUUCAAAUCCGUAGUCGAUUUGCGUCGAAGUGGUUCGAUUCCACCUGGGGGGC
hit 0   : 6422360 6422275 (rev)    56.65 bits
           (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>><<<<<<____>>>>
         1 gcccggaugAuccucagUGGUcuggggugcaggCUUCAAAccuguagcugucUAGCgaca 60      
           GCCC+::UGA+C:UC:GUGGUC:GG:GUGC:G:CUUCAAA:C:GUAG::G::U GC::C:
  13880396 GCCCCACUGAACUUCGGUGGUCCGGGGUGCGGACUUCAAAUCCGUAGUCGAUUUGCGUCG 13880455

           >><<<<_______>>>>)))))))))
        61 gaguggUUCAAUUccaccuuucgggc 86      
           :AGUGGUUC+AUUCCACCU::+GGGC
  13880456 AAGUGGUUCGAUUCCACCUGGGGGGC 13880481

----endhit

Found 1 hits.

done 2.33563e+08 nucs (frac lets thru so far=1.22879e-06, 2d-fracLetsThru=5.75733e-06).
Filter report: done 2.33563e+08 nucs (frac lets thru so far=1.22879e-06, 2d-fracLetsThru=5.75733e-06).

FULL: done 2.33563e+08 nucs (frac lets thru so far=1.22879e-06, 2d-fracLetsThru=5.75733e-06).

CPU time: 4880.20u 27.70s 01:21:47.89 Elapsed: 01:21:47