Params: ./cmzasha --no-stderr --no-insert-hack --filter 250 20 data/tRNAscan/tRNAscan-ESELC.cm /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta 1 hmm data/tRNAscan/tRNAscan-ESELC-fwdinf-hmmtype1.bin 
Build: release
Host: bicycle.cs.washington.edu
pid: 21193
----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta
----hmm-from-cmFileName: tRNAscan-ESELC.cm
----hmm-build-info: ;(default construction of HMM) Params: --no-insert-hack --cm2hmm-set-node-combiner-forward-inf tRNAscan-ESELC.cm 1 1 100000 1  Build: release Host: SERENA ;Params: --no-insert-hack --cm2hmm-set-node-combiner-forward-inf tRNAscan-ESELC.cm 1 1 100000 1  Build: release Host: SERENA 
----cmFile: data/tRNAscan/tRNAscan-ESELC.cm (global)

----fastaFile: /projects/bio6/zasha/seqs/genomes/C_elegans/C_elegans_nuclear.fasta
----sequence: #3,emb|BX284604| Caenorhabditis elegans chromosome IV, complete sequence.
----isReversed: 0
----hitSequence: GCCCGGAUGAACCAUGGCGGUCUGUGGUGCAGACUUCAAAUCUGUAGGCGGUUAGCGCCGCAGUGGUUCGACUCCACCUUUCGGGU
hit 0   : 658187 658272 (fwd)    58.68 bits
           (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>><<<<<<____>>>>
         1 gcccggaugAuccucagUGGUcuggggugcaggCUUCAAAccuguagcugucUAGCgaca 60      
           +CCCGGAUGA+CC:::G GGUC:::GGUGCAG:CUUCAAA:CUGUAG::G::UAGC::C:
    658187 GCCCGGAUGAACCAUGGCGGUCUGUGGUGCAGACUUCAAAUCUGUAGGCGGUUAGCGCCG 658246  

           >><<<<_______>>>>)))))))))
        61 gaguggUUCAAUUccaccuuucgggc 86      
           :AGUGGUUC+A UCCACCUUUCGGG+
    658247 CAGUGGUUCGACUCCACCUUUCGGGU 658272  

----endhit

Found 1 hits.

done 2.00528e+08 nucs (frac lets thru so far=1.44618e-06, 2d-fracLetsThru=-3.44041e-05).
Filter report: done 2.00528e+08 nucs (frac lets thru so far=1.44618e-06, 2d-fracLetsThru=-3.44041e-05).

FULL: done 2.00528e+08 nucs (frac lets thru so far=1.44618e-06, 2d-fracLetsThru=-3.44041e-05).

CPU time: 4840.92u 2.79s 01:20:43.71 Elapsed: 01:20:43