params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,16671,M34485.1,1,sp|M34485.1|ACTRPF Acinetobacter calcoaceticus 5'-phosphoribosyl anthranilate isomerase (trpF) gene; complete cds; and tryptophan synthase (trpB) gene; partial cds.,1,0,360,150,83.70,UUUACACAAUUCGUAACAAGUUAAAAGCAUUCGCUUUAGGGAAACUGGUGCAAAUCCAGUGCUGCCCCCGCAACGGUAAAAAUGUAAACCAUAUUAAAAAAGUCAUUUAGACUUACGCCACUGCAUGCAUAGAUGUGGGAAGGUGAAUAUGCUUGUCUCUUUUUGAGAUGCCAUUUGAGUCCGGAGACCUGCUUGUUACAUCUAUCCACUC,M34485.1/360-150,360-150,0,210,M34485.1/360-150
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,17825,AE001694.1,1,sp|AE001694.1|AE001694 Thermotoga maritima section 6 of 136 of the complete genome.,1,1,12102,11954,28.34,AAAGGGGAAGCCGGUGAAAAUCCGGCGCGGGGCCGCCACCGUGACCGGGGACGAAACCCGCAGAACGCCACUGGGGCGAUCACCCUGGGAAGGCGCGGGGAGUAGGAUGAUCCGGAAGCCGGGAAACCCGCCCGCGGUGAAGGGGAACC,AE001694.1/12102-11954,12102-11954,0,148,AE001694.1/12102-11954
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,18878,AE004105.1,1,sp|AE004105.1|AE004105 Vibrio cholerae chromosome I; section 13 of 251 of the complete chromosome.,0,2,5235,5438,101.85,UACUAUCAGCGCCAAGCUGGUGCUAUUUAGAUGCCUGGAUGGCUAAAAAUGGCUGAAAAGGGAAUCCGGUGUAACUCCGGAACUGACGCGCAGCGGUAAGAGAGAACGAACGCUCAAACGACACUGCUUUUCGAGUGGGAAGUCGAGCCAGUAGGCCAACAGUGCUCUCAAGUCCGAAGACCUGCCAGCAACUGAGUUAUGCAG,AE004105.1/5235-5438,5235-5438,0,203,AE004105.1/5235-5438
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,19486,AE004716.1,1,sp|AE004716.1|AE004716 Pseudomonas aeruginosa PAO1; section 277 of 529 of the complete genome.,1,3,11608,11412,49.44,GGGCCGAAGAGGGAACACGGAGCCGCGGUCUUUUCGAAGCCCGGGCCUAGCCGUGGCUGCCCCCGCAACUGUAUGCAGCCUGUAUUCGCGCCAUUCGCCACUGGAUUACCGGGAAGGCGGCGCGAAGCGGAGGUUCCUCCCCCGGGUGGAACGCCGGGCUGCGAGCCAGGAGACCUGCCGCCGAAACCAGUCGCGAG,AE004716.1/11608-11412,11608-11412,0,196,AE004716.1/11608-11412
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,19487,AE004717.1,1,sp|AE004717.1|AE004717 Pseudomonas aeruginosa PAO1; section 278 of 529 of the complete genome.,0,4,4221,4426,123.07,CCCAUCCGGCCCGUUCCAGGUGCCUCCUGCCGCCGCGCAGGAGGUGAAACGGGAAGCCGGUGCGUCACUUCGGUGAUCAGUCCGGCGCUGCCCCCGCAACGGUAAGCGAGCGAAAUCCUCUUCAGGCCACUGUGCUCCGGCAUGGGAAGGCGAGGAUUUCACGACCCUCGCAAGCCCGGAGACCGGCCUGCAACGCCCUGUUGGCA,AE004717.1/4221-4426,4221-4426,0,205,AE004717.1/4221-4426
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,19491,AE004721.1,1,sp|AE004721.1|AE004721 Pseudomonas aeruginosa PAO1; section 282 of 529 of the complete genome.,0,5,1492,1697,43.04,CCUAGGCGGGUUGUCCCAGGUGUCUCGUGCCGGCGCGCACGAGGUGAAACGGGAAGCCGGUGACGCUCUCCGAGCCAGUCCGGCGCUGCCCCCGCAACGGUAAGCGCAUCGCGCGCGAGCCCGGAGACCGGCCUGGAACCUUUCGUUUGAUUCACCCGCGGUGGGCGGGCGCAAGCGUGAAGCGGGCCGUCCGGGCCUGUUCCUCG,AE004721.1/1492-1697,1492-1697 1433-1242,0,205,AE004721.1/1492-1697
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,19491,AE004721.1,1,sp|AE004721.1|AE004721 Pseudomonas aeruginosa PAO1; section 282 of 529 of the complete genome.,1,6,1433,1242,127.11,GUAGCCUUGCCGGUUCGAGGUUCCUCGCCGGCGACGGCGGGGCUAAGAGGGAACGCGGUCGAUGCCGCGGCUGCCCCCGCAACUGUGAACGGCGAUCGUUCCCCAAUGCCACUGCGUGACGCGGGAAGGCGGGGAACCGGCGGAGACGCCAGACCGUGAGCCAGGAGACCUGCCUCGUCGAUCCCGUGGCGC,AE004721.1/1433-1242,1492-1697 1433-1242,0,191,AE004721.1/1433-1242
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,20392,AE005628.1,1,sp|AE005628.1|AE005628 Escherichia coli O157:H7 EDL933 genome; contig 3 of 3; section 247 of 290.,0,7,5121,5311,91.14,CUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUGCCAUUCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGG,M57568.1/271-81 AE005628.1/5121-5311 X17416.1/46-236 U00006.1/28626-28816 AP002567.1/204750-204940,5121-5311,0,190,AE005628.1/5121-5311
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,20482,AE005721.1,1,sp|AE005721.1|AE005721 Caulobacter crescentus CB15 section 47 of 359 of the complete genome.,0,8,1901,2129,106.92,GUCUGUUGCCGUUGUCGUGGUCUGCGGACGUUCGCGUCCGGAGCUAAGAGGGAAGUCGGUGAGGGCGUGAAACCCUGAAUCCGGCGCUGCCCCCGCAACUGUGAGCGGCGAGCCGCUGUCCGUUUCGUGUCACUGACGCGCCGAAGCUGGUUCGGGGAUGCGUCGGGAAGGCCAGGGCAGGGGUGACGACCCGUGAGCCAGGAGACCUGCCUCGACAGAUAACGUCCUC,AE005721.1/1901-2129,1901-2129,0,228,AE005721.1/1901-2129
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,20610,AE005849.1,1,sp|AE005849.1|AE005849 Caulobacter crescentus CB15 section 175 of 359 of the complete genome.,0,9,870,1059,127.83,AGCUCUAGCUUCGCGUCAGGUUCCUCGAAAGAGGAUGAAAAGGGAACGAGGUUGAAGACCUCGGCUGCCCCCGCAACUGUAAGCGGCGAGCUUCGCGUCACAUGCCACUGGGCCCAAAAGGCCUGGGAAGGCGACGCCCAGAAGCAUUGACCCGUGAGCCAGGAGACCUGCCCGGCGCAGUCGUUCAUCG,AE005849.1/870-1059,870-1059,0,189,AE005849.1/870-1059
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21682,AE006935.1,1,sp|AE006935.1|AE006935 Mycobacterium tuberculosis CDC1551;  section 21 of 280 of the complete genome.,1,10,7139,6957,88.25,CCACGCUCUGCAUGCCAAUAUUCUUCCCGUCAGGCGAUGACGAUGCAGGAAGCCGGUGAGAAUCCGGCGCGGUCCCGCCACUGUCACCGGGGAGCGACCCUCGUAAGCCACGGCCACAGGCUGGAAGGCGAGGCAAGCAACGAUCCGGGAGCCAGGAGACUCGCGUCAUCGCGUCCUGCCACC,AE006935.1/7139-6957,7139-6957,0,182,AE006935.1/7139-6957
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,21742,AE006995.1,1,sp|AE006995.1|AE006995 Mycobacterium tuberculosis CDC1551;  section 81 of 280 of the complete genome.,1,11,10153,9953,84.20,GGCAUCGAGCGGGGCAACGAUGCUUCGCGAGAGGGAACCUGGUGAGAAUCCGGGACUGUCCCGCAGCGGUAUGCAGGAACGACCGCCGUCUUGGAAGUAGACAAGCACUGGUCUCAACGACUGGGAAGCGACGGCCAGUAGGAGCACCCACCGGGUGCGAGCCUGCGAGUCCGAAGACCUGCCAGCCGUGCCGGACGCGCC,BX248337.1/276050-275850 AE006995.1/10153-9953 Z95585.1/22327-22127,10153-9953,0,200,AE006995.1/10153-9953
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22392,AE007648.1,1,sp|AE007648.1|AE007648 Clostridium acetobutylicum ATCC824 section 136 of 356 of the complete genome.,0,12,1506,1693,109.69,UUGCUACUAAAAUUUGUAGGUUCAACUGAGGAGUCUUAGUUGAUUAAAAAGGAAUCAGGUGAAAAGCCUGAGCGGUCCCGCCACUGUAAUAAAGGAGUUUAAGUACAAUAUGUCACUGGGAAACUGGGAAGGCGUACUUAAGCAAUGAUUUUUGAGCCAGGAUACUUGCCAUAUUCUAGUAUGUUUUU,AE007648.1/1506-1693,1506-1693,0,187,AE007648.1/1506-1693
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22488,AE007744.1,1,sp|AE007744.1|AE007744 Clostridium acetobutylicum ATCC824 section 232 of 356 of the complete genome.,0,13,3364,3542,101.05,AAAUAAUACCAUAUUUUAGGCACCUAAUCUUAGGUUUAAUAGGGAAAUUGGUGAAAAUCCAAUGCAACCCCCGUUACUGUAUACAGUUACAAAACCAAUGUCCACUGGAGUUUUCUCUGGGAAGGAUGGUUGAGGCUAAACUGUGAGCCAGGAGACCUACCUAAAAUAUUAUGGAACUU,AE007744.1/3364-3542,3364-3542,0,178,AE007744.1/3364-3542
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22689,AE007949.1,1,sp|AE007949.1|AE007949 Agrobacterium tumefaciens str. C58 circular chromosome; section 7 of 254 of the complete sequence.,0,14,2778,3002,121.64,ACUAUAUGUGGUGUUCAAGGUUCUUCCGAUUCGCUAGGGUUGGGAGCUAAGACGGGAAUUCGGUGCGUAACGCCAUCACGGCGGAGCAAGGCCGAAACUGCCCCCGCAACUGUGAGCGGCGAGCAUCGUUCCGAUUUGAGCCACUGGAGCCAAAAGCUCCGGGAAGGCUGGAAUAGAUGUUGUGACCCGCAAGUCAGGAGACCUGCCUUGAGCGCAAAUGUCCAC,AE008981.1/4074-4298 AE007949.1/2778-3002,2778-3002,0,224,AE007949.1/2778-3002
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22760,AE008020.1,1,sp|AE008020.1|AE008020 Agrobacterium tumefaciens str. C58 circular chromosome; section 78 of 254 of the complete sequence.,0,15,1643,1871,113.22,GGAUAACAUGUCCGUGAUGGUUCCUUCCGGGCGUUCCGGAAGGUGAAAAGGGAACACGAUAGGGACAAAUCCUCAUUCGUGGCUGCCCCCGCAACUGUGAGCGGAGAGCCUGAAACGAAAUGCCACUGGCAAGCCAUCUCGCCUCCAUCAAGGGGGAAGGCAAUGCCGGGAAGGUGUUUCAGGUUUUGACCCGUAAGCCAGGAGACCUGCCAUCACGGAAAUAUCCAUG,AE009054.1/2448-2676 AE008020.1/1643-1871,1643-1871,0,228,AE008020.1/1643-1871
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22827,AE008087.1,1,sp|AE008087.1|AE008087 Agrobacterium tumefaciens str. C58 circular chromosome; section 145 of 254 of the complete sequence.,1,16,6687,6504,106.50,CCAUAGCUUCUCCGGUCAGGUGCCCGCCCUUGCGGCGGGAGAAUCGGGAAUCCGGUGAAAGACCGGAACGUGCCCAACGCUGUAAGGCGGAUGCUCUUUUUCUCAUGCCACUGAAGCAAUUCGGGAAGGCGAAAGGGGCGGAUGAAGCUUAGUCAGAAGACCGGCCUGGCAGGAUAGACCGAAC,AE008087.1/6687-6504 AE009122.1/6687-6504,6687-6504,0,183,AE008087.1/6687-6504
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,22933,AE008193.1,1,sp|AE008193.1|AE008193 Agrobacterium tumefaciens str. C58 circular chromosome; section 251 of 254 of the complete sequence.,1,17,9538,9380,36.25,UUCCGCCCCGAGAAAGGGUCAUUCCGUGGCUGCCCCCGCAACUGUAAGCGGUAAGCCCGCACCGUAAAGCCACUGAACCUUUAUGAUCGGUUCGGGAAGGCGGUGACAGGGUGUUGAUAGCCGCAAGCCAGGAGACCUGCCGUUUCAGGAAAAAGCGUC,AE008193.1/9538-9380,9538-9380,0,158,AE008193.1/9538-9380
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23040,AE008300.1,1,sp|AE008300.1|AE008300 Agrobacterium tumefaciens str. C58 linear chromosome; section 104 of 187 of the complete sequence.,1,18,11923,11714,127.59,ACAUUGGUUAGCCAUCGUGGUUCUGCGGACGAAGGUCCGGAGCUAAGAGGGAAUUCGGUGAGGGCUUUAAUCACAGCCUGAAUCCGAAGCUGCCCCCGCAACUGUAAGCGACGAGCGAAAGUCCAUCAUGUCACUGAGGCCGGCCUCGGGAAGACGGACCAAAGCUAUGACCCGCAAGCCAGGAGACCUGCCGCGAUAGAUAACGUCCAC,AE008300.1/11923-11714 AE009314.1/45-254,11923-11714,0,209,AE008300.1/11923-11714
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23082,AE008342.1,1,sp|AE008342.1|AE008342 Agrobacterium tumefaciens str. C58 linear chromosome; section 146 of 187 of the complete sequence.,0,19,7843,8078,106.10,CUUAUGUGAGAAAGCGACGGUUCCUACAGCCGAAAGGCGAAGGGAUUAAUAGGGAACAUGGUGCGGGCGAUCUUUUUCGUCCAAUGCCUUGGCUGCCCCCGCAACUGUAAGCGGAUUGUUGUUCAUCCCAGUGACGCUUGAAGGCGUCAUGCCACUGUUUUUUUCGGAAUGCGGGAAGGCAGAUGAGGGACGCAAAUCCGUGAGCCAGGAGACCUGCCGUCAAAAUGGAAACCAUC,AE009270.1/3802-3567 AE008342.1/7843-8078,7843-8078,0,235,AE008342.1/7843-8078
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23514,AE008789.1,1,sp|AE008789.1|AE008789 Salmonella typhimurium LT2; section 93 of 220 of the complete genome.,1,20,23249,23074,102.60,CCAUAACGUAAACCAACAGGUUUGCCACAUUUGUGGUAGGGAAGGGGGUGAAAAUCCCCCGCAGCCCCCGCUGCUGUGAUGCUGACGACCCCGUAAAGACCACUGAUCGCAAGAUUGGGAAGGACGGGCGAGGAGGACGCUAAGCCAGAAGACCUGCCUGUCGGUGAUAACCAACA,AE016837.1/31933-32108 AE008789.1/23249-23074 X63012.1/351-526 AL627273.1/19647-19472 L12006.1/1016-1191,23249-23074,0,175,AE008789.1/23249-23074
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23618,AE008893.1,1,sp|AE008893.1|AE008893 Salmonella typhimurium LT2; section 197 of 220 of the complete genome.,0,21,4980,5173,86.55,CGGUAGCAUCCGUGGGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGAAAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGAGAUGAGAGCGUAAGCAGACACUGCCUCCGGCGGGAAGUCAUCAUUUCUGCUAUCCAGCCAACGGAUAACCCUCCAAGCCCGAAGACCUGCCGGCUAACGUCGCAUCUGG,AE008893.1/4980-5173,4980-5173,0,193,AE008893.1/4980-5173
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23702,AE008981.1,1,sp|AE008981.1|AE008981 Agrobacterium tumefaciens strain C58 circular chromosome; section 7 of 256 of the complete sequence.,0,22,4074,4298,121.64,ACUAUAUGUGGUGUUCAAGGUUCUUCCGAUUCGCUAGGGUUGGGAGCUAAGACGGGAAUUCGGUGCGUAACGCCAUCACGGCGGAGCAAGGCCGAAACUGCCCCCGCAACUGUGAGCGGCGAGCAUCGUUCCGAUUUGAGCCACUGGAGCCAAAAGCUCCGGGAAGGCUGGAAUAGAUGUUGUGACCCGCAAGUCAGGAGACCUGCCUUGAGCGCAAAUGUCCAC,AE008981.1/4074-4298 AE007949.1/2778-3002,4074-4298,0,224,AE008981.1/4074-4298
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23775,AE009054.1,1,sp|AE009054.1|AE009054 Agrobacterium tumefaciens strain C58 circular chromosome; section 80 of 256 of the complete sequence.,0,23,2448,2676,113.22,GGAUAACAUGUCCGUGAUGGUUCCUUCCGGGCGUUCCGGAAGGUGAAAAGGGAACACGAUAGGGACAAAUCCUCAUUCGUGGCUGCCCCCGCAACUGUGAGCGGAGAGCCUGAAACGAAAUGCCACUGGCAAGCCAUCUCGCCUCCAUCAAGGGGGAAGGCAAUGCCGGGAAGGUGUUUCAGGUUUUGACCCGUAAGCCAGGAGACCUGCCAUCACGGAAAUAUCCAUG,AE009054.1/2448-2676 AE008020.1/1643-1871,2448-2676,0,228,AE009054.1/2448-2676
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23843,AE009122.1,1,sp|AE009122.1|AE009122 Agrobacterium tumefaciens strain C58 circular chromosome; section 148 of 256 of the complete sequence.,1,24,6687,6504,106.50,CCAUAGCUUCUCCGGUCAGGUGCCCGCCCUUGCGGCGGGAGAAUCGGGAAUCCGGUGAAAGACCGGAACGUGCCCAACGCUGUAAGGCGGAUGCUCUUUUUCUCAUGCCACUGAAGCAAUUCGGGAAGGCGAAAGGGGCGGAUGAAGCUUAGUCAGAAGACCGGCCUGGCAGGAUAGACCGAAC,AE008087.1/6687-6504 AE009122.1/6687-6504,6687-6504,0,183,AE009122.1/6687-6504
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23949,AE009228.1,1,sp|AE009228.1|AE009228 Agrobacterium tumefaciens strain C58 circular chromosome; section 254 of 256 of the complete sequence.,1,25,1838,1621,127.18,UAAGGGUAAGGGACUGACGGUCUUUUCCCGGCAACGGGAAAAGCUAAGAGGGAACACGGUUCCGCCCCGAGAAAGGGUCAUUCCGUGGCUGCCCCCGCAACUGUAAGCGGUAAGCCCGCACCGUAAAGCCACUGAACCUUUAUGAUCGGUUCGGGAAGGCGGUGACAGGGUGUUGAUAGCCGCAAGCCAGGAGACCUGCCGUUUCAGGAAAAAGCGUC,AE009228.1/1838-1621,1838-1621,0,217,AE009228.1/1838-1621
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,23991,AE009270.1,1,sp|AE009270.1|AE009270 Agrobacterium tumefaciens str. C58 linear chromosome; section 40 of 187 of the complete sequence.,1,26,3802,3567,106.10,CUUAUGUGAGAAAGCGACGGUUCCUACAGCCGAAAGGCGAAGGGAUUAAUAGGGAACAUGGUGCGGGCGAUCUUUUUCGUCCAAUGCCUUGGCUGCCCCCGCAACUGUAAGCGGAUUGUUGUUCAUCCCAGUGACGCUUGAAGGCGUCAUGCCACUGUUUUUUUCGGAAUGCGGGAAGGCAGAUGAGGGACGCAAAUCCGUGAGCCAGGAGACCUGCCGUCAAAAUGGAAACCAUC,AE009270.1/3802-3567 AE008342.1/7843-8078,3802-3567,0,235,AE009270.1/3802-3567
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24035,AE009314.1,1,sp|AE009314.1|AE009314 Agrobacterium tumefaciens str. C58 linear chromosome; section 84 of 187 of the complete sequence.,0,27,45,254,127.59,ACAUUGGUUAGCCAUCGUGGUUCUGCGGACGAAGGUCCGGAGCUAAGAGGGAAUUCGGUGAGGGCUUUAAUCACAGCCUGAAUCCGAAGCUGCCCCCGCAACUGUAAGCGACGAGCGAAAGUCCAUCAUGUCACUGAGGCCGGCCUCGGGAAGACGGACCAAAGCUAUGACCCGCAAGCCAGGAGACCUGCCGCGAUAGAUAACGUCCAC,AE008300.1/11923-11714 AE009314.1/45-254,45-254,0,209,AE009314.1/45-254
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24224,AE009507.1,1,sp|AE009507.1|AE009507 Brucella melitensis 16M chromosome I; section 64 of 195 of the complete sequence.,0,28,7696,7924,119.42,UCGCAAUUUUCAGGAGACGGUUCCGCCAUUGCGGCGGAUGAAAAGGGAACACGGUGAAGCCAUAGGGCUGAAACCGAGACUGCCCCCGCAACUGUAACCGGAGAGCUAUCCUCCACAGGCCGCGCAAGCGGCCAAAGCCACUGAAAGCAGCAAUAUGCUGCAAUCGGGAAGGCGGAGGCAAAGCGAAGACCCGGAAGUCAGGAGACCUGCCGUAUCCGGUCACCCAUGC,AE009507.1/7696-7924 AE014432.1/6199-5971,7696-7924,0,228,AE009507.1/7696-7924
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24406,AE009689.1,1,sp|AE009689.1|AE009689 Brucella melitensis 16M chromosome II; section 51 of 107 of the complete sequence.,0,29,4862,5094,125.17,CCGUAAUACCGUCAUGACGGUUCCCCGACCGAGAGCGAAGGGGAUUAAUAGGGAACACGGUGAGGACGACCCAUCAAGGGGCCGAGACCGUGGCUGCCCCCGCAACUGUAAGCGGAUUGCCGUUCAUCCUCGUGACGCCGAAAGCGUCAUGCCACUGUGCCCACGGCACGGGAAGGCAGAUGGACGGCGAUUAUCCGCAAGCCAGGAGACCUGCCGUCUUACGUAGUCCAUUG,AE014570.1/13585-13353 AE009689.1/4862-5094,4862-5094,0,232,AE009689.1/4862-5094
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,24443,AE009726.1,1,sp|AE009726.1|AE009726 Brucella melitensis 16M chromosome II; section 88 of 107 of the complete sequence.,1,30,9564,9351,121.75,ACCAUAUCUUGUGUUCGAGGUUCUUUCGAUUCGACGAGUCGGGAGCUAAGACGGGAAUCCGGUGCGCUUGCCCAUGGUGGGCGGGCAAUGCCGGAGCUGCCCCCGCAACUGUAAGCGGCGAGCUUUGCGCCCCAUGCCACUGGCGAAAGCCGGGAAGGCGGGUGGAAGCGUUGAGCCGUGAGCCAGGAGACCUGCCUUGAGCGUGAACGUCCAC,AE009726.1/9564-9351 AE014531.1/11156-11369,9564-9351,0,213,AE009726.1/9564-9351
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25207,AE010499.1,1,sp|AE010499.1|AE010499 Fusobacterium nucleatum subsp. nucleatum ATCC 25586; section 41 of 197 of the complete genome.,1,31,5969,5796,66.38,AAUGAUAAGAAACAAAUAGGUGCUUAUUGGCUUAAUAAAGGAAGUUGGGUGCGAAUCCCACACAGCAAUGCUACUGUAUUGUGGACGAAAUUACAAUAGCCACUGGGAAACUGGGAAGGUGUAAAAGUAGGUUGAAACUAAGUCAGGAGACUUACCAUUAUUUUAUAUUAAACU,AE010499.1/5969-5796,5969-5796,0,173,AE010499.1/5969-5796
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25250,AE010542.1,1,sp|AE010542.1|AE010542 Fusobacterium nucleatum subsp. nucleatum ATCC 25586; section 84 of 197 of the complete genome.,0,32,7559,7740,82.72,UUAAUAUCAUGUCAAUUAUGUUCCUUAUUUUUUAAGGCUAAGAGGGAAUUUGGUGAGAUACCAAAACGAGCCCGUCGCUGUAAUUGAGUUUUUUCUUGUUUUAUACCACUGGAUUUUUAUUUGGGAAGGUAAAGAAAUAUAAAUCAUAAGUCAGAAGACCUGCAUAAUUGAAUUACUCUAUC,AE010542.1/7559-7740,7559-7740,0,181,AE010542.1/7559-7740
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,25350,AE010642.1,1,sp|AE010642.1|AE010642 Fusobacterium nucleatum subsp. nucleatum ATCC 25586; section 184 of 197 of the complete genome.,1,33,9064,8882,61.32,AAUAAUUUAUAAUAUUAUUGUACACGGGUGCAUAUUGCUUAAUAGAGGAAGAAGAGUGAAAAUCUCUCACAGCGAAAGCUACUGUAAUGUGGAUGAAAUCAUAAUAAACCACUGGGCAACUGGGAAGGUAUGAAAGUAAGGUGAAGCAAAGUCAGGAGACUUACCAUUAUAUUAAUAUUUAUA,****    NEW  HIT  #0  ****,,2,0,AE010642.1/9064-8882
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,26023,AE011315.1,1,sp|AE011315.1|AE011315 Leptospira interrogans serovar lai str. 56601 chromosome I; section 124 of 397 of the complete sequence.,0,34,3428,3605,94.60,UGGAACGGAAAACUUGUUUAUUCUCGUGAUGAGGAAGGGAAUCCGGUUCAAAUCCGGAGCUGAACCCGCAGCUGUAAUCGCCGAAUGAGAUUUCGCAAUCAUGCCACUGCGUUAAAUACGCGGGAAGGCUGCGAAAUCGGCGAAAGCCAGAAGACCUAACAAGUAAAAAAACAAACUA,AE011315.1/3428-3605,3428-3605,0,177,AE011315.1/3428-3605
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,26312,AE011604.1,1,sp|AE011604.1|AE011604 Leptospira interrogans serovar lai str. 56601 chromosome II; section 16 of 34 of the complete sequence.,1,35,13614,13434,71.10,GCACAGUUUUUUCAUAGGGUUUAUCUAUGUUUCACAUAGAUAGGAAGACGGUUAAAAUCCGUCACGGUAUCCGCCGCUGUAAGAAGGACGAAAGACAUACUAAGCCACUGGGACAACCUGGGAAGGCGUGUCGAGUAGAAAGAUUUCAAGUCAGAAUACGACCUAUGAAAAUUCCUGAAAG,****    NEW  HIT  #1  ****,,2,0,AE011604.1/13614-13434
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,26672,AE011964.1,1,sp|AE011964.1|AE011964 Xanthomonas axonopodis pv. citri str. 306;  section 342 of 469 of the complete genome.,1,36,10940,10783,30.43,UCGCCUUGGCGAGCUGCAAUUCCGGAGCUGCCCCCGCAACGGUGGGCGAGGUCAGAUGCCGCACUACGCCACUGUGCAGUCGCAUGGGAAGGCGCGGCAUCGGAAGCGCCAGCUUCCACUCGCAAGCCCGGAGACCGGCCUGAGGGAUUGACCCGGCA,AE011964.1/10940-10783,10940-10783,0,157,AE011964.1/10940-10783
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,27128,AE012421.1,1,sp|AE012421.1|AE012421 Xanthomonas campestris pv. campestris str. ATCC 33913;  section 329 of 460 of the complete genome.,1,37,6485,6262,128.60,UACCAUGCGCGCCCCUGAGGUGACUGCCGGAAUUCCGGUGGUUUAAACGGGAAUCCGGUGCGCGCAUCGCCUUGGCGAGACGCAAGUCCGGAGCUGCCCCCGCAACGGUGGGCGAGGUCAGGUGCCGCAACAGGCCACUGUGCACACGCAUGGGAAGGCGCGGUACCGGAAGCGCAGGCUUCCACUCGCGAGCCCGGAGACCGGCCUGAGGGAUUGACCCGGCA,AE012421.1/6485-6262,6485-6262,0,223,AE012421.1/6485-6262
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,27306,AE012817.1,1,sp|AE012817.1|AE012817 Chlorobium tepidum TLS  section 38 of 194 of the complete genome.,1,38,569,357,100.49,UACUUCAUCCGAUUAUGUGGUGCCCGCCAUGGAAACAUACGGGCUUAAAAGGGAAUCCGGUGAGAGUCCGGAACAGUACCCGCUGCUGUAAUUCCGCGCUGGCCGCAAGGCUGGCGACAAGGUUUGCCGACAAUGCCACUGUCCCGUUCAGGGAUGGGAAGGCCGGCAGAAUCCGGGAAAGUCAGAAGACCUGCCUCAUAUUUUUUGGCUUCG,AE012817.1/569-357,569-357,0,212,AE012817.1/569-357
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,27307,AE012818.1,1,sp|AE012818.1|AE012818 Chlorobium tepidum TLS  section 39 of 194 of the complete genome.,0,39,1974,2213,69.55,UUCUUUCUCGCCAUGACAGGUGCCGGUUUAAAAGCCGGAGAAUAGGGAAGUACGUGAGAUUCGUACACUGUACCCGCAACUGUACAACGGUUAACCGCCGGGCAAAUUCCGUGGCCACACGGAUGCGCAAGGCGGGCUUUCAGGUCACUGCCGGUUUUCCUCCACGGAAAACUGCGGGAAGGUUUGGAGGCGCUCGAUGCCGUGAAAGUCAGGAGACCUGCCAGUCAUGCAUUUGCACCA,AE012818.1/1974-2213,1974-2213,0,239,AE012818.1/1974-2213
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,27309,AE012820.1,1,sp|AE012820.1|AE012820 Chlorobium tepidum TLS  section 41 of 194 of the complete genome.,0,40,3705,3927,103.76,AAUAAAUAAUUCAGUUACGGUUUCCGGUGCCCGGUGGGGCGCCGGAAUGAAAAGGGAACCCGGUGAAAAUCCGGGACAGUGCCCGCUGCUGUGAUCCUCCCGUCGGCCACAAUCGGGUCGGCGGACGAUCGCUUCCGAUGAGGCCACUGGUUCGCGCCCGCGAACCGGGAAGGCCGGAAGCGAGGGGAGAGUCAGAAGACCUGCCGUAAUGCAGUAAAUGCUC,AE012820.1/3705-3927,3705-3927,0,222,AE012820.1/3705-3927
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,27321,AE012832.1,1,sp|AE012832.1|AE012832 Chlorobium tepidum TLS  section 53 of 194 of the complete genome.,0,41,3064,3332,75.76,GAGUUCUUUCAGCAUUACGGUGCCGGAUGAAAGAUGCCGGAUAAUAGGGAAGUGCGUGUGAAUCGCACACUGUGCCCGCAACUGUAAGAUGGUAUGUCGCGCGACGACAGGAGCAGCUCUGCUUUUGUGGCCGUUGCGGAUCGGGUGUAUCCACUCCGCCAACCUCUGAUAACCACGGGGAAUGCGGGGGAAGGCUGCCCGGAGGAAAACGUCGAAGUAAUUUCGCAGCCAUCGAAGUCAGGAGACCUGCCGUAGUGGUUGGCGCCGAA,AE012832.1/3064-3332,3064-3332,0,268,AE012832.1/3064-3332
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,27347,AE012858.1,1,sp|AE012858.1|AE012858 Chlorobium tepidum TLS  section 79 of 194 of the complete genome.,0,42,6757,6937,22.14,UCUUUCACAUGAUUAGCUGGUGCCGGUUUUAAAGCCGGAGAAUAGGGAAGUACGUGAGAUUCGUACACUGUACCCGCAACUGUACAACGGAAAACUGCCGCUGGCAGGUAUGGCCACAUGCCUCAAAGCCGCAGCCGGUGCACGUCACUGCCAGGCUCCUCCACGGAGCGGGCGGGAAGGC,AE012858.1/6757-6937,6757-6937,0,180,AE012858.1/6757-6937
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,27499,AE013010.1,1,sp|AE013010.1|AE013010 Thermoanaerobacter tengcongensis strain MB4T; section 37 of 244 of the complete genome.,0,43,3537,3777,112.96,UGAAUAUUAAAGCCUUAUGGUCCCAUGAUGGGUUAAAAGGGAAGACGGGUGAGAAUCCCGCGCAGCCCCCGCUACUGUGAGGGAGGACGAAGCCCUAGUAAGCCACUGUCCGGCACUCAACUGAGCGCGUUAGUAAGGAGAAAAGAGGGAGAGAAAUUGCGUUCAGUUGAGUGCCGGGUGGGAAGGCAGGGUGGAGGAUGAGUCCCGAGCCAGGAGACCUGCCAUAAGGUUUUAGAAGUUC,AE013010.1/3537-3777,3537-3777,0,240,AE013010.1/3537-3777
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,27500,AE013011.1,1,sp|AE013011.1|AE013011 Thermoanaerobacter tengcongensis strain MB4T; section 38 of 244 of the complete genome.,0,44,30,270,115.38,GAAUAUAAAAAGCCUUAUGGUCCCGUGAUGGGUUAAAAGGGAAGACGGGUGAGAAUCCCGCGCAGCCCCCGCUACUGUGAGGGAGGACGAAGCCCUAGUAAGCCACUGUCCGGCACUCAACUGAGCGCGUUAGUAAGGAGAAAAGAGGGAGAGAAAUUGCGUUCAGUUGAGUGCCGGAUGGGAAGGCAGGGUGGAGGAUGAGUCCCGAGCCAGGAGACCUGCCAUAAGGUUUUUAAAAGUU,AE013011.1/30-270,30-270,0,240,AE013011.1/30-270
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,28117,AE013632.1,1,sp|AE013632.1|AE013632 Yersinia pestis KIM section 32 of 415 of the complete genome.,0,45,2530,2790,83.84,UCGUAGCAUUGUGGUCCGGCCUCAUGCUGUUAUUUAAACACCUAAGAGUUAAAAGGGAAUCCGGUGUAAAUCCGGAGCUGACGCGCAGCGGUAAGGGGAAGUCACGGCGAUAGGUUUCUAACAGACACUGUCCGCAAGGAUGGGAAGUCAUCGCCUGCUCUAUUUCGCGCCAUUUAUUUAUCACAGUAUUUUUACUGUCAUAACCAUGGCCUGAUACCAGAGAUCCUAAGCCCGAAGACCUGCCGGUAUUACGUCGCAAUA,AJ414159.1/142249-141989 AE013632.1/2530-2790,2530-2790,0,260,AE013632.1/2530-2790
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,28811,AE014429.1,1,sp|AE014429.1|AE014429 Brucella suis 1330 chromosome I section 115 of 190 of the complete genome.,1,46,551,314,83.43,GUGUCAAACCAUGUGACAGGUUUUGCCGGAACGAAUCCCCGGCAAUACCAAAAGGGAAUGCGACGGACGGACCCACGCCGGGCGUCUUUAUCGCAGCCGACCCCGCGACUGUAGAGCGGAGAGGGAAGAGGCAAGCCGGGCAACCGGCAGCCACUGGAAAUCAGAUAGAUUUCUGGGAAGGCGCUUUAUUCCCCAAGACCCGCGAGCCAGGAGACCUGCCUGUUGCAUGAGGGCAUUG,AE014429.1/551-314,551-314,0,237,AE014429.1/551-314
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,28814,AE014432.1,1,sp|AE014432.1|AE014432 Brucella suis 1330 chromosome I section 118 of 190 of the complete genome.,1,47,6199,5971,119.42,UCGCAAUUUUCAGGAGACGGUUCCGCCAUUGCGGCGGAUGAAAAGGGAACACGGUGAAGCCAUAGGGCUGAAACCGAGACUGCCCCCGCAACUGUAACCGGAGAGCUAUCCUCCACAGGCCGCGCAAGCGGCCAAAGCCACUGAAAGCAGCAAUAUGCUGCAAUCGGGAAGGCGGAGGCAAAGCGAAGACCCGGAAGUCAGGAGACCUGCCGUAUCCGGUCACCCAUGC,AE009507.1/7696-7924 AE014432.1/6199-5971,6199-5971,0,228,AE014432.1/6199-5971
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,28913,AE014531.1,1,sp|AE014531.1|AE014531 Brucella suis 1330 chromosome II section 27 of 108 of the complete genome.,0,48,11156,11369,121.75,ACCAUAUCUUGUGUUCGAGGUUCUUUCGAUUCGACGAGUCGGGAGCUAAGACGGGAAUCCGGUGCGCUUGCCCAUGGUGGGCGGGCAAUGCCGGAGCUGCCCCCGCAACUGUAAGCGGCGAGCUUUGCGCCCCAUGCCACUGGCGAAAGCCGGGAAGGCGGGUGGAAGCGUUGAGCCGUGAGCCAGGAGACCUGCCUUGAGCGUGAACGUCCAC,AE009726.1/9564-9351 AE014531.1/11156-11369,11156-11369,0,213,AE014531.1/11156-11369
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,28952,AE014570.1,1,sp|AE014570.1|AE014570 Brucella suis 1330 chromosome II section 66 of 108 of the complete genome.,1,49,13585,13353,125.17,CCGUAAUACCGUCAUGACGGUUCCCCGACCGAGAGCGAAGGGGAUUAAUAGGGAACACGGUGAGGACGACCCAUCAAGGGGCCGAGACCGUGGCUGCCCCCGCAACUGUAAGCGGAUUGCCGUUCAUCCUCGUGACGCCGAAAGCGUCAUGCCACUGUGCCCACGGCACGGGAAGGCAGAUGGACGGCGAUUAUCCGCAAGCCAGGAGACCUGCCGUCUUACGUAGUCCAUUG,AE014570.1/13585-13353 AE009689.1/4862-5094,13585-13353,0,232,AE014570.1/13585-13353
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,29755,AE015411.1,1,sp|AE015411.1|AE015411 Shigella flexneri 2a str. 301 section 374 of 412 of the complete genome.,0,50,8714,8904,85.88,CUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUAGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUGCCAUCCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGG,AE016990.1/90583-90393 AE015411.1/8714-8904,8714-8904,0,190,AE015411.1/8714-8904
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,29868,AE015526.1,1,sp|AE015526.1|AE015526 Shewanella oneidensis MR-1 section 75 of 457 of the complete genome.,0,51,127,357,81.62,UUUGAGUCAACCUUCUGUGGUGCUUGCGAUGAUAGCGUCGCGAGAUAAUCGGGAAGCCAGUGAAAUUCUGGCACUGCCCCCGCAACGGUAAAAGGUGAGAGACGGCCGCAUUCGAUAGGUGUUCACGAUGAACCCGUAAAUCGCAGUGUGCAAAGGUCAGUUUCGCGUUUAUCUCUAGUGAGAUGGAUUAUAGCCUAAGUCCGGAGACCGGCCCUAAAGGUGUUUUUGAGA,AE015526.1/127-357,127-357,0,230,AE015526.1/127-357
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,29890,AE015548.1,1,sp|AE015548.1|AE015548 Shewanella oneidensis MR-1 section 97 of 457 of the complete genome.,0,52,1057,1279,55.30,CCUAUGCUAUUGCAUUAAGGUCAUAAACGCCGGAUCAACCCAAAUAUAAUAGGGAAUCGGGGCGCUGCCCGUCAGCCAGCCCGAACUGUACCCGCAACUGUGAGUAGUUAAAAGAAGCGCCUAGAUUCUAGAUUCUAGAUUCUAGAUUCUAGAUUCUAGAUUCUAAAGCCUAGCACCUUCUUUUCUACAAGUCAGGAGACCUGCCUAUUGCUGUUUUCGCUGC,AE015548.1/1057-1279,1057-1279,0,222,AE015548.1/1057-1279
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30275,AE015938.1,1,sp|AE015938.1|AE015938 Clostridium tetani E88; section 3 of 10 of the complete genome.,0,53,141765,141949,110.17,UGAAUAUGAAAAUAUUCAGGUGCCAUUUUAGGUUUAAAAGGGAAUGUGGUUUAAUUCCACAGCAGCCCCCGCUACUGUAAUUGAGGACGAAUCUUUCACAAACCACUCUUUCAAAAAGGGAAGGGGAAGGGAAAGACAAGGGUGAAUCAUGAGCCAGGAGACCUGCCUGUAUAUGAAAGAUAAAC,****    NEW  HIT  #2  ****,189936-190117 141777-141949 165030-165211 219824-220006 189808-189620 166402-166584,1,172,AE015938.1/141765-141949
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30275,AE015938.1,1,sp|AE015938.1|AE015938 Clostridium tetani E88; section 3 of 10 of the complete genome.,0,54,165030,165211,89.36,AAUAAUAUGAAUAAAAAAGGUGAAAUAGUUAUUUCUUAAAAGGGAAGCAUGGUGAAAAUCCAUCACGGUCCCGCCACUGUAAUCAGGGAGUUAGGUUUUACCACUGUUAAUUAACGGGAAGGAGAAUCUAUAAAAACUAUGAACUGUAAGUCAGGAGACCUGCCUUUUUUUAAUUAAACAUU,AE015938.1/165030-165211,189936-190117 141777-141949 165030-165211 219824-220006 189808-189620 166402-166584,0,181,AE015938.1/165030-165211
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30275,AE015938.1,1,sp|AE015938.1|AE015938 Clostridium tetani E88; section 3 of 10 of the complete genome.,0,55,166402,166584,81.89,UUUAAUAUUAUUUUAUUAGGUGCUUUACAAGUUAAAAGGGAAAGUGGUGAAAAUCCACUGCAGCCCACCGUUACUGUAAUGCUGACGAAAUCUUAUAAAAUCCACUAGAUAUAUUUUAUCUGGGAAGGUUAGAAAUUAGGAAGAAGCUAAGCCAGGAAACCUGCCUAAUAAGUGUUAAUUCUU,AE015938.1/166402-166584,189936-190117 141777-141949 165030-165211 219824-220006 189808-189620 166402-166584,0,182,AE015938.1/166402-166584
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30275,AE015938.1,1,sp|AE015938.1|AE015938 Clostridium tetani E88; section 3 of 10 of the complete genome.,0,56,189936,190117,90.90,GAAUAUUAAAAUUUAUAGAGUUACCCAUUUUUGGGGUUAAAAGGGAAGGGGGUUAGAAUCCUCCACGGUCCGGCCACUGUAAUUGGUAAGUUUAUUCCAUAAGCCAUUGAGAUAUUCUCGAGAAGGUGGAAAUAAAUGAUGAACCAUAAGUCAGGAGACCUGCUUUAUAUUUAAGAUGCAGC,AE015938.1/189936-190117,189936-190117 141777-141949 165030-165211 219824-220006 189808-189620 166402-166584,0,181,AE015938.1/189936-190117
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30275,AE015938.1,1,sp|AE015938.1|AE015938 Clostridium tetani E88; section 3 of 10 of the complete genome.,0,57,219824,220006,101.25,UUAAAUAUUUAUUUAUAAAGUUUCUUGUAAAAGAGAAUUAAAAGGGAAGGAGGCGAAAAUCCUCCACGGUCCGGCCACUGUAAUUGGUGAGUUUAUUCCAUAAGCCAUUGAGAUAUUCUUGAGAAGGCGGAAAUAAAUGAUGAACCAUAAGUCAGGAGACCUGCUUUAUAAGAAUAAAUAUAC,AE015938.1/219824-220006,189936-190117 141777-141949 165030-165211 219824-220006 189808-189620 166402-166584,0,182,AE015938.1/219824-220006
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30275,AE015938.1,1,sp|AE015938.1|AE015938 Clostridium tetani E88; section 3 of 10 of the complete genome.,1,58,189808,189620,110.21,AAUAGUAAAUGAAAUUUAGGUGUCCACUUUGUAAAAAUGAUGGAUGAAAAGGGAAUGUGGUUCAAUUCCACAGCAGCCCCCGCUACUGUAAUAGAUGACAAGCCUUUAGUAACCACUCUUUAAAAGGAGGAAGGUAAAGGUUAGAAUGAUUCUUAAGCCAGGAGACCUGCCUAGAUUGUUAAAAUCCUC,AE015938.1/189808-189620,189936-190117 141777-141949 165030-165211 219824-220006 189808-189620 166402-166584,0,188,AE015938.1/189808-189620
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30276,AE015939.1,1,sp|AE015939.1|AE015939 Clostridium tetani E88; section 4 of 10 of the complete genome.,0,59,117645,117826,89.89,AAAUGUUUUAUGAAAAUAGGUUUAAUAACUUUAAUUAAAAGGGAAGUUGGGUGAAAAUCCCACGCGGUACCGCCGCUGUAAGAGAGAAGUUUUCUUCUAUUAUGCCACUGUUUUUUAAUGGGAAGGCAGAAGAAAAUUAUGAUACUCGAGCCAGAAUAUCUGCCUAUUUUAUUCACUAUAGC,AE015939.1/117645-117826,117645-117826,0,181,AE015939.1/117645-117826
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30277,AE015940.1,1,sp|AE015940.1|AE015940 Clostridium tetani E88; section 5 of 10 of the complete genome.,1,60,279870,279682,99.55,UAAUAUAAUAAGACAACAGGUUUGAAAUAAUAUUUAUUAUUUCAAUUAAAAGGGAAACAGGUGUAACUCCUGUACGGUCCCGCCGCUGUAAUAAAAGAGUAGUGCAGAAUAUGCCACUGUUAAUAUGGGAAGGCUUUGUACUAUGUUGAUUUUUAAGUCAGAAGACCUGCCUGUUGUUAUAGAUCAUAC,AE015940.1/279870-279682,279870-279682 273052-272875,0,188,AE015940.1/279870-279682
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30277,AE015940.1,1,sp|AE015940.1|AE015940 Clostridium tetani E88; section 5 of 10 of the complete genome.,1,61,273052,272875,99.77,AUUUAUAGAAUAAAUUUAGGUGCUUAUAGCUUAAUAGGGAAGCAGGUGAAAAUCCUGAACGGUCCCGCCGCUGUGAUGGGGAGUUUUUUCAAAGUAAACCACUGGAUAAUAUAUCUGGGAAGGUAUGAAAAAAUAAUGAACCUAAGUCAGAAUACCUACCUAAAUUAAAUACACUAUA,AE015940.1/273052-272875,279870-279682 273052-272875,0,177,AE015940.1/273052-272875
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30278,AE015941.1,1,sp|AE015941.1|AE015941 Clostridium tetani E88; section 6 of 10 of the complete genome.,0,62,2960,3143,104.08,CAUAUUAUGAAUUUUUAUGGUGUAAUUUCACAUUACGUAAAAGGGAAGCUUGGUGUAAAUCCAGCACGGUCCCGCCACUGUAAGAGAGAGUAUAUCAUUAUAUGCCACUGUUGUUUAUCAAUGGGAAGGCAAUGAUGUACUAUGAUCUCAAGUCAGGAGACCUACCAUAAAAACUUAUACAAUU,AE015941.1/2960-3143,2960-3143,0,183,AE015941.1/2960-3143
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30281,AE015944.1,1,sp|AE015944.1|AE015944 Clostridium tetani E88; section 9 of 10 of the complete genome.,1,63,6900,6723,97.64,AUUUAAUAUUAGAUUUUAGGUGUGAUCUUAUAAUUACUUAAAAGAGAAAGUGGUGAAAAUCCACUACAGCCCCCGCUACUGUAAUAGUGGACGAUUCCUAUUAUCCACCAGUUAACUGGGAAGGAAGGAUAAGGAAGAAACUAAAGUCAGGAGAACUGCCUAAAAUAUAUUACUUCGG,AE015944.1/6900-6723,6900-6723,0,177,AE015944.1/6900-6723
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30307,AE016770.1,1,sp|AE016770.1|AE016770 Escherichia coli CFT073 section 16 of 18 of the complete genome.,0,64,161998,162188,91.05,CUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUGCCAUCCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGG,AE016770.1/161998-162188,161998-162188,0,190,AE016770.1/161998-162188
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30316,AE016780.1,1,sp|AE016780.1|AE016780 Pseudomonas putida KT2440 section 7 of 21 of the complete genome.,0,65,58096,58317,106.19,CCUUCGCGGCGUGUUUCAGGUGCCCUGCCAGCCCCGACUGGGCAGGGUGAAACUGGGAAGCCGGUGGGCGCCAGCAUGGCGCGAUUCCGGCGCUGCCCCCGCAACGGUGGAUGAGUAAAAGGCCGCGCAGGGCCACUGGAUGCCAGCAUCCGGGAAGGCGCGCAGGCCAGGGCCAAGGCCCACUCACAAGCCCGGAGACCGGCCUGAUACUGCCAACGGCAU,AE016780.1/58096-58317,58096-58317,0,221,AE016780.1/58096-58317
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30319,AE016783.1,1,sp|AE016783.1|AE016783 Pseudomonas putida KT2440 section 10 of 21 of the complete genome.,1,66,53812,53604,129.03,AGAUGCGCGCCAGUUUCAGGUGCCCUGCGCCGCCGCGCGCAGGGUGAAACGGGAAACCGGUGCGUCGUGUUGCCCACGACAAGUCCGGUGCUGCCCCCGCAACGGUAAGCGAGCGAACCCUUCGAGAUACCACUGUGCUCAAGCAUGGGAAGGUGAAGGUUUCAUGCCCCUCGCAAGCCCGGAGACCGGCCUGGAGCUUCACUUGGCAA,AE016783.1/53812-53604,50062-49864 53812-53604,0,208,AE016783.1/53812-53604
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30319,AE016783.1,1,sp|AE016783.1|AE016783 Pseudomonas putida KT2440 section 10 of 21 of the complete genome.,1,67,50062,49864,101.45,UCUACCAUGCGGGCCGCCGGUUUCCACCACGGAACUAACAGGGAAUCCCAGGCCUGCCAAUACAGGCCAAUCGGAACUGCCCCCGCAACUGUAGGUGCCGAGCCUGCUCCAUCGAUGCCACUGGGCCUGCCGCCCGGGAAGGCCGGAGCCGGGCCGUGACGCACCAGUCAGGAGACCUGCCGGCCUACAUUCACCAACC,AE016783.1/50062-49864,50062-49864 53812-53604,0,198,AE016783.1/50062-49864
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30322,AE016786.1,1,sp|AE016786.1|AE016786 Pseudomonas putida KT2440 section 13 of 21 of the complete genome.,0,68,232051,232274,118.61,CCUUAUGCCUCGCGUUCAGGUGCCCCUCAGGGGGUGAAACGGGAAACCGGUGCGUCCCAGGCCCUUCAGCAGGGCCGGACAAUGCCGGUGCUGCCCCCGCAACGGUAAGCGAGUGAAGCGUCUGUACCACUGUGCCUCGUAGUACGGCAUGGGAAGGUGACGCGUUCCAGGAGCCCAGCUCUUCCUCGCAAGCCCGGAGACCGGCCUGGCGUUCAUGAACACCC,AE016786.1/232051-232274,232051-232274,0,223,AE016786.1/232051-232274
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30323,AE016787.1,1,sp|AE016787.1|AE016787 Pseudomonas putida KT2440 section 14 of 21 of the complete genome.,1,69,55358,55152,110.25,GUAGCCUUGCCACUUCGAGGUUCUUCGGCCUGGCCGAAGCUAAGACGGGAACGCGGUACAAGCCGCGGCUGCCCCCGCAACUGUAAGCACCGACAACGGAUCGACACAGCCACUGCGCCAACGCGCGGGAAGGCGUCAUCCCGCCAGCCCGAACGGGGACAUGGAACGGUGCAAGCCAGGAGACCUGCCUCGUCACGUUUUCGACUU,AE016787.1/55358-55152,55358-55152,0,206,AE016787.1/55358-55152
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30334,AE016800.1,1,sp|AE016800.1|AE016800 Vibrio vulnificus CMCP6 chromosome I section 4 of 11 of the complete sequence.,0,70,261827,262025,105.64,UAGUAUGCGCUUCAAGCUGGUGCUAUCUGGAAGUAUAGAUGGCUGAAAAGGGAAUCCGGUGUGAAUCCGGAACUGACGCGCAGCGGUAAUAGAGAACGAAAGCUUAAUCAGACACUGCACGAUGGAAUCGUGUGGGAAGUCAGGCAAGUAGGUUAACAGCUCUUGAGUCCGAAUACCUGCCAGCAACUGAGCAAACACU,AE016800.1/261827-262025,261827-262025,0,198,AE016800.1/261827-262025
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30355,AE016837.1,1,sp|AE016837.1|AE016837 Salmonella enterica subsp. enterica serovar Typhi Ty2; section 4 of 16 of the complete genome.,0,71,31933,32108,102.60,CCAUAACGUAAACCAACAGGUUUGCCACAUUUGUGGUAGGGAAGGGGGUGAAAAUCCCCCGCAGCCCCCGCUGCUGUGAUGCUGACGACCCCGUAAAGACCACUGAUCGCAAGAUUGGGAAGGACGGGCGAGGAGGACGCUAAGCCAGAAGACCUGCCUGUCGGUGAUAACCAACA,AE016837.1/31933-32108 AE008789.1/23249-23074 X63012.1/351-526 AL627273.1/19647-19472 L12006.1/1016-1191,31933-32108,0,175,AE016837.1/31933-32108
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30363,AE016845.1,1,sp|AE016845.1|AE016845 Salmonella enterica subsp. enterica serovar Typhi Ty2; section 12 of 16 of the complete genome.,1,72,282347,282154,86.55,CGGUAGCAUCCGUGGGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGAAAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGAGAUGAGAGCGUAAGCAGACACUGCCUCCGGCGGGAAGUCAUCAUUUCUGCUAUCCAGUCAACGGAUAACCCUCCAAGCCCGAAGACCUGCCGGCUAACGUCGCAUCUGG,AE016845.1/282347-282154 AL627279.1/139350-139157,282347-282154,0,193,AE016845.1/282347-282154
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30378,AE016861.1,1,sp|AE016861.1|AE016861 Pseudomonas syringae pv. tomato str. DC3000 section 6 of 21 of the complete genome.,0,73,295441,295655,111.49,CCUUCGCGGCUUGUUUCAGGUGCUCUGCAAUCCUCGAUUGGCAGGGUGAAACAGGGAAGCCGGUGUGGAUCGACCGAUCCGAUCCCGGCGCUGCCCCCGCAACGGUAAAUGAGUCAAGGCUGUGCAUCGUGCCACUGUGUUUCGACACGGGAAGGCGCGCAGCCGGGGUAACCCGCUCAUGAGCCCGGAGACCGGCCUGAACCACUCAAUGGCAU,AE016861.1/295441-295655,295441-295655,0,214,AE016861.1/295441-295655
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30384,AE016867.1,1,sp|AE016867.1|AE016867 Pseudomonas syringae pv. tomato str. DC3000 section 12 of 21 of the complete genome.,0,74,99125,99339,103.82,CCUGUGCACCUUGUUUCGGGUGCCCCUCACGGGGUGAAACGGGAAACCGGUGCGCUCAACCUGUUGAGCAAGUCCGGUGCUGCCCCCGCAACGGUAAGCGAGAGAAGGUCUGAUCCACUGUGCUCUGGCAUGGGAAGGUGACCUUGAAGGUCUGAACGCACACGUGUUCAAGCCCCUCGCGAGCCCGGAGACCGGCCCGACAUUUUUCCAAUGAC,AE016867.1/99125-99339,236456-236654 99066-98842 99125-99339,0,214,AE016867.1/99125-99339
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30384,AE016867.1,1,sp|AE016867.1|AE016867 Pseudomonas syringae pv. tomato str. DC3000 section 12 of 21 of the complete genome.,0,75,236456,236654,105.39,UUUACCAUGCCGGCCGUCGGUUUCCGAGAGGAACUAACAGGGAAUUCGCCAGCUUUGUUUCAAAGGCCAAAACGAAACUGCCCCCGCAACUGUAGGCAUCGAGCCUGCUCCAAGACUGCCACUGGAUUCAGAUCCGGGAAGGCCGGAGCAUGGUGAUGACAUGCCAGUCAGGAGACCUGCCGACCCGAUUCAACCAACU,AE016867.1/236456-236654,236456-236654 99066-98842 99125-99339,0,198,AE016867.1/236456-236654
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30384,AE016867.1,1,sp|AE016867.1|AE016867 Pseudomonas syringae pv. tomato str. DC3000 section 12 of 21 of the complete genome.,1,76,99066,98842,93.40,GUAGCCUUGCCGGUUCGAGGUUCUUCAUGUGUAAAGCGUUACGACAUGAAGCUAAGACGGGAAUGCGGUACAUGCCGCAGCUGCCCCCGCAACUGUAAACGGUCAUGUUCAUUGCACAGCCACUGCUGCGGCGGGAAGGCGCGAUGAAUGUGUGUCGGCAAGGUGUUCAACGCCCGCCACACGCUGCCGUGAGCCAGGAGACCUGCCUCGAACCGGGCUGACAAA,AE016867.1/99066-98842,236456-236654 99066-98842 99125-99339,0,224,AE016867.1/99066-98842
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30401,AE016932.1,1,sp|AE016932.1|AE016932 Bacteroides thetaiotaomicron VPI-5482; section 7 of 21 of the complete genome.,0,77,22310,22515,91.83,UAUCUUUGUCCCCGCAUUGGUUUGCGACUCUCAUCACGAGGGAAGCGAUUAAAAGGGAAUCAGGUGUAAAUCCUGAACAGUCCCGCUGCUGUAAGUUCCAUAGAUAUGUUGCGAGCAAUCUACUCAAAGCCACUGGAAAGAAAAUUCCGGGAAGGCGCCCGCAACAGGAAUAAGUCAGAAGACCUGCCAUGUAAAAUCCGUUUCAC,AE016932.1/22310-22515,22310-22515 26373-26579,0,205,AE016932.1/22310-22515
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30401,AE016932.1,1,sp|AE016932.1|AE016932 Bacteroides thetaiotaomicron VPI-5482; section 7 of 21 of the complete genome.,0,78,26373,26579,90.51,CUAUCUUUGUCGCGCAUUGGUUUGCAACUCUCAUGCACGAGGGAAGCAAUUAAAAGGGAAUCAGGUGAAAGUCCUGAACAGUCCCGCUGCUGUAAGUUCAUUUUUUGGUUGCGAGCAAUCGACUUUAUAGCCACUGGAAAGCAAAUUCCGGGAAGGCGUUCGCAACAGGAACAAGUCAGAAGACCUACCAUGCAAACUCGUUUCACU,AE016932.1/26373-26579,22310-22515 26373-26579,0,206,AE016932.1/26373-26579
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30402,AE016933.1,1,sp|AE016933.1|AE016933 Bacteroides thetaiotaomicron VPI-5482; section 8 of 21 of the complete genome.,0,79,293262,293468,79.51,AUCUUUGCCCCCCGAAAUGGUUCGGAGUCCGUGUCCAACGGACAACGAUUAAAAGGGAAUCGGGUGUAAAUCCCGUACAGUCCCGCUGCUGUGAAGCUCUAUACAAUGUCUUAUUAAUGAACUAAUUUAUCGCCACUGAUGUUAUUUCGGGAAGGCACUAUAAGACAAGAGUCAGUCAGAAGACCUGCCACUUCGCGUAAAGCGUUC,AE016933.1/293262-293468,293262-293468,0,206,AE016933.1/293262-293468
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30403,AE016934.1,1,sp|AE016934.1|AE016934 Bacteroides thetaiotaomicron VPI-5482; section 9 of 21 of the complete genome.,0,80,101000,101187,68.21,AUCUUUGUAUCCGAUUUCGGAACUAAAAAGAGGUUUAGUCAAUGAGGGAACGCUGUGCAAAUCGGCGACAGUACCCGCUGCUGUAAUUCUCUGUGAAUCCGCACACUAUGUCACUGCAUCGGCAGAUGUGGGAAGGCGCUGCGGGGGAGGGAUAAGUCAGAAGACCUGCCGGAGUCAAAUAAACAUAU,AE016934.1/101000-101187,218065-217852 49817-49625 101000-101187,0,187,AE016934.1/101000-101187
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30403,AE016934.1,1,sp|AE016934.1|AE016934 Bacteroides thetaiotaomicron VPI-5482; section 9 of 21 of the complete genome.,1,81,218065,217852,94.99,GUAUCUUUGCACCUGCAAGGUUCGUAUUUGGAGUUGUCUAACCUUCCAAAACGAUGAAAAGGGAAUCCGGUGUAAAUCCGGGACAGUACCUGCUGCUGUAAGUCCUCUCUUUCGGGAGAUGAGUUUAUCACAUUCUUUGCCACUGGUGACAUCACUGGGAAGGCGUGAUAAAUGGGGACGAGUCAGAAGACCUGCCUUGACGCUGCAGAUUUAU,AE016934.1/218065-217852,218065-217852 49817-49625 101000-101187,0,213,AE016934.1/218065-217852
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30403,AE016934.1,1,sp|AE016934.1|AE016934 Bacteroides thetaiotaomicron VPI-5482; section 9 of 21 of the complete genome.,1,82,49817,49625,106.38,AUUUUGCAGUCGGGAAAUGGUUUCGGGAGGUUUACGCCUUCCGAAUGAAAAGGGAACCCGGUGAAAAUCCGGGACAGUACCCGCUGCUGUGAGUCCACAAAAACGGACAUCGAACUUUUGCCACUGGUGUAAUACCGGGAAGGCACGAUGACCGGGACGAGUCAGAAGACCUGCCAUGACCGGAAUGAGAUUU,AE016934.1/49817-49625,218065-217852 49817-49625 101000-101187,0,192,AE016934.1/49817-49625
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30421,AE016952.1,1,sp|AE016952.1|AE016952 Enterococcus faecalis V583; section 6 of 11 of the complete genome.,1,83,63114,62943,51.51,ACGAAGAUACAAUAUAUAUGUACUUAUGAAGUGUCAGGGAAAGAGGUGCGAAUCCUCUACAGACCUACCUACUGUAUGGUGGAUGAAACCAAUAAGACCACAGAUUAUUCUGGAAGGAUUGGGAGUAAGAAGAAGCUAAGUCAGGAUACCGGCUUGAUAAGUCUAAUCAUUC,****    NEW  HIT  #3  ****,,2,0,AE016952.1/63114-62943
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30450,AE016990.1,1,sp|AE016990.1|AE016990 Shigella flexneri 2a str. 2457T section 13 of 16 of the complete genome.,1,84,90583,90393,85.88,CUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUAGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUGCCAUCCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGG,AE016990.1/90583-90393 AE015411.1/8714-8904,90583-90393,0,190,AE016990.1/90583-90393
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30471,AE017011.1,1,sp|AE017011.1|AE017011 Bacillus cereus ATCC 14579 section 14 of 18 of the complete genome.,0,85,46644,46832,103.26,CCUUUCAAAAGGAAAAUAGGUACACGAAAGUUUUGUUUCGUGUUUAAAAGGGAAGCUUGGUGAAACUCCAACACGGUCCCGCCACUGUAAAUGCUGAGAUUUCUUUUUGGUGCCACUGUGAAAACGGGAAGGUAAAAGAAAUUAUAUGAAGCAUAAGUCAGGAGACCUGCCUGUUUUAACAACACUGAU,AE017011.1/46644-46832,46644-46832,0,188,AE017011.1/46644-46832
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,30489,AE017037.1,1,sp|AE017037.1|AE017037 Bacillus anthracis str. Ames section 14 of 18 of the complete genome.,0,86,59439,59627,104.81,CCUUUCAAAAGGAAAAUAGGUACACGAACAUUUCGUUUCGUGUUUAAAAGGGAAGCUUGGUGAAACUCCAACACGGUCCCGCCACUGUAAAUGCUGAGAUUUCUUUUUGAUACCACUGUGAAAACGGGAAGGUAAAAGAAAUUAUAUGAAGCAUAAGUCAGGAGACCUGCCUGUUUUAACAACACUGAU,AE017037.1/59439-59627,59439-59627,0,188,AE017037.1/59439-59627
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,31635,AF010496.1,1,sp|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003; partial genome.,0,87,105318,105541,92.18,CCACUCAGGGCGGGCGCUGGUUUCUGUCCUAUGACAGGCGAAGAGGGAAUGUGAAGGGAAUUGCGACGGCUUUGCCGCGAAACCCGACCGCAGCCGCCCCCGCGACCGUGACCGGAGAGGGCGCCCCGAGGCCACUGGCACCAGCCGGGAAGGCGGGGCGACCGUGAGGGGACCCCCCCUCGCAUCCGCAAGCCGGGAGACCUGCCAGCGCAUGGAUUUCGGGC,AF017138.1/793-1016 AF010496.1/105318-105541,105318-105541 39869-39652 116971-117194,0,223,AF010496.1/105318-105541
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,31635,AF010496.1,1,sp|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003; partial genome.,0,88,116971,117194,121.45,GCUACUCCAACAGGCGAUGGUUCCCAACUGGACGGGAUUAAUAGGGAACACGGUGAGGAUUACCCAUCAGGGGCCUAAUCCGUGGCUGCCCCCGCAACUGUGAGCGGCGAGACGACGGUCGAAGACCACUGGCCCCCCCGAUCCACCGGGGAGAACGGCCGGGAAGGUGACCCGAGUUGAUCGAACCGCAAGUCAGGAGACCUGCCAUCGCUCUGGCGUCGCAA,AF010496.1/116971-117194,105318-105541 39869-39652 116971-117194,0,223,AF010496.1/116971-117194
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,31635,AF010496.1,1,sp|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003; partial genome.,1,89,39869,39652,126.29,GGCACCUUCGCGGCAGAUGGUUCCCGGCCAAGCCACGCGCGGCCGGGUGAAAAGGGAAUACGGUGUGGUGUAGGCAUCAGCCGCCAAAUCCGUAACUGCCCCCGCAACUGUAAGCGGCGAGCACCCCCCGGCAACCACUGGCCCCGACCGCGGGGCCGGGAAGGUGGGGAAGCCACGACCCGCAAGUCAGGAGACCUGCCAUCAGCGUCAUCAACCGC,AF010496.1/39869-39652,105318-105541 39869-39652 116971-117194,0,217,AF010496.1/39869-39652
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro01.dat.fasta.gz,32232,AF017138.1,1,sp|AF017138.1|AF017138 Rhodobacter capsulatus cob(I)alamin adenosyltransferase (cobO) and cobalamin synthesis protein (cobW) genes; complete cds.,0,90,793,1016,92.18,CCACUCAGGGCGGGCGCUGGUUUCUGUCCUAUGACAGGCGAAGAGGGAAUGUGAAGGGAAUUGCGACGGCUUUGCCGCGAAACCCGACCGCAGCCGCCCCCGCGACCGUGACCGGAGAGGGCGCCCCGAGGCCACUGGCACCAGCCGGGAAGGCGGGGCGACCGUGAGGGGACCCCCCCUCGCAUCCGCAAGCCGGGAGACCUGCCAGCGCAUGGAUUUCGGGC,AF017138.1/793-1016 AF010496.1/105318-105541,793-1016,0,223,AF017138.1/793-1016
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,357,AF193754.1,1,sp|AF193754.1|AF193754 Zymomonas mobilis ZM4 fosmid 41C7-2; complete sequence.,1,91,24966,24788,99.00,GGAAAUUUUUUUGCAUAGGGUUUCCUUCGAGUGAAGGAAAAUUGGGAACAAGGUGCAAAACCUUGGCUGCCCCUGCAACUGUAAACAGUUGAAACGCCAAAAAGCCACUGAAUCUAUUCGGGAAGGCGGUUGUUUCGAUGCUGUGAGCCAGGAGACCGACCCUAUGUAAUCGUUCCACG,AF193754.1/24966-24788,24966-24788 4343-4142,0,178,AF193754.1/24966-24788
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,357,AF193754.1,1,sp|AF193754.1|AF193754 Zymomonas mobilis ZM4 fosmid 41C7-2; complete sequence.,1,92,4343,4142,133.60,GCAAUGAGGAAGGAUUAAGGUUCUUUGUCAUUGGCAAAGCUAAGAGGGAAACUGGUGCGAAAGAAUUUUCAAAGCCAGUGCUGCCCCCGCAACUGUAAACGGCGAGCAAAGAUCAAAAUGCCACUGAUAUUAUUAUCGGGAAGGCUGAUCGGACGCGGUGACCCGUCAAGUCAGGAGACCUGCCUUAAACCAAGUCAUCCAC,AF193754.1/4343-4142,24966-24788 4343-4142,0,201,AF193754.1/4343-4142
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,8818,AF263012.1,1,sp|AF263012.1|AF263012 Streptomyces griseus subsp. griseus macrotetrolide biosynthesis gene cluster; downstream region.,1,93,9229,9015,102.95,AGGCUGACCGGUGCAGCUGGUUCGCCCUGUCCGCCAGGCAGGGUGUCGCAAGAGGGAACCCGGUGGAAAUCCGGGACUGCCCCGCAGCGGUGAGUGGGAACGACCGCCGUCAUACGCACUGGGCCCGGACGGGUCUGGGAAGCGACGGCCACUAGGUGUCUGCCCGGCAGACGUGCCCGCGAGUCCGAAGACCUGCCCGCUGCCCGCACGCGACC,AF263012.1/9229-9015,9229-9015,0,214,AF263012.1/9229-9015
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,15261,AF306632.1,1,sp|AF306632.1|AF306632 Bradyrhizobium japonicum nodulate formation efficiency C protein (nfeC) gene; complete cds.,1,94,382,181,112.64,GAUAAUCCAAGUCGUCGAGGUUCUCCGGUUCCCAUUGAUCCGGAGCUAAGAGGGAAGCCGGUGCAAAUGCCGGCGCUGCCCCGCAACUGUAAGUGGCGAGCCGCUGUCCAACGAUGUCACUGAAGCCUGCACGGCUUCGGGAAGGCCGGACAGCAGCGAUGACCAGCAAGCCAGGAGACCGGCCCCGACAAUAUAUUGGUCC,AF306632.1/382-181,382-181,0,201,AF306632.1/382-181
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro02.dat.fasta.gz,17375,AF322013.1,1,sp|AF322013.1|AF322013 Bradyrhizobium japonicum symbiotic gene region; part 2 of 2.,0,95,174308,174510,108.40,GAUAAUCCAAGUCGUCGAGGUUCUCCGGUUCCCAUUGAUCCGGAGCUAAGAGGGAAGCCGGUGCAAAUGCCGGCUCUGCCCCCGCAACUGUGAGCGGCGAGCCGCUGUCCGACGAUGUCGCUGAAGCCUGCACGGCUUCGGGAAGGCCGGACAGCAGCGAUGACCAGCAAGCCAGGAGACCGGCCCCGACAAUAUAUUGGUCC,AF322013.1/174308-174510 AP005942.1/132143-132345,174308-174510,0,202,AF322013.1/174308-174510
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,347,AJ414159.1,1,sp|AJ414159.1|AJ414159 Yersinia pestis strain CO92 complete genome; segment 19/20,1,96,142249,141989,83.84,UCGUAGCAUUGUGGUCCGGCCUCAUGCUGUUAUUUAAACACCUAAGAGUUAAAAGGGAAUCCGGUGUAAAUCCGGAGCUGACGCGCAGCGGUAAGGGGAAGUCACGGCGAUAGGUUUCUAACAGACACUGUCCGCAAGGAUGGGAAGUCAUCGCCUGCUCUAUUUCGCGCCAUUUAUUUAUCACAGUAUUUUUACUGUCAUAACCAUGGCCUGAUACCAGAGAUCCUAAGCCCGAAGACCUGCCGGUAUUACGUCGCAAUA,AJ414159.1/142249-141989 AE013632.1/2530-2790,142249-141989,0,260,AJ414159.1/142249-141989
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,412,AL591978.1,1,sp|AL591978.1|AL591978 Listeria monocytogenes strain EGD; complete genome; segment 6/12,0,97,19809,19999,104.62,UUAAAUAGGUCUUAUGUUGGUGGAAUGUAUGUACAUUUCUGAAAGAGGAAUUCGGUGCGAUGCCGAAACUGCCCCCGCAACUGUAAGGUGGACAAGAAUCGAGAUAACCACUGUACGUUUUUAGCGUAUGGGAAGGUUCGAUUGUUGGAUGAAGCCAAGUCAGGAUACUCGCCAAAUAAGACGGAAGCAAC,AL591978.1/19809-19999,56481-56658 19809-19999,0,190,AL591978.1/19809-19999
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,412,AL591978.1,1,sp|AL591978.1|AL591978 Listeria monocytogenes strain EGD; complete genome; segment 6/12,0,98,56481,56658,71.22,GUACUAAACAACUAAAUAGGUGAAUAUAUUAAUCCGGGAAAGAGGUGAAAAUCCUCUACAGGCCCUAGCUACUGUAAUACGGACGAAAACCAAACAUAUGUCACUGGAAGCAAUUCCGGGAAGACUGGUGAGUAGGAUGAUGUUAAGUCAGGAGACCGCUUUUAUAUUCGAUAUCCAA,AL591978.1/56481-56658,56481-56658 19809-19999,0,177,AL591978.1/56481-56658
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,423,AL596167.1,1,sp|AL596167.1|AL596167 Listeria innocua Clip11262 complete genome; segment 5/12,0,99,167425,167616,94.78,UUAAAUAGGUCUUAUGUUGGUGGAAUGUGUUUGCAUUUCUGAAAGAGGAAUUCGGUAUGAAGCCGGAACUGCCCCCGCAACUGUAAGGUGGACAAGAAUUGAAAAUAACCACUGUGCGUUUUUGACGUAUGGGAAGGUUCAAUUGUUGAAUGAAGCCAAGUCAGGAUACUCGCCAAAUAAGACGGAAGCAAC,AL596167.1/167425-167616,167425-167616,0,191,AL596167.1/167425-167616
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,423,AL596167.1,1,sp|AL596167.1|AL596167 Listeria innocua Clip11262 complete genome; segment 5/12,0,100,202425,202602,68.57,GUACUAAACAACUAAAUAGGUGAAUAUAUUAAUCCGGGAAAGAGGUGGAAAUCCUCUACAGGCCCUAGCUACUGUAAUUCGGACGAAAGCCAAACAUAUGUCACUGGAAGAAAUUCCGGGAAGACUGGUGAGUAGGUUGAUGAUAAGUCAGGAGACCGCUAGUAUAUUCGAUAUCCAA,****    NEW  HIT  #4  ****,167425-167616,2,0,AL596167.1/202425-202602
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,439,AL627273.1,1,sp|AL627273.1|AL627273 Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18; complete chromosome; segment 9/20,1,101,19647,19472,102.60,CCAUAACGUAAACCAACAGGUUUGCCACAUUUGUGGUAGGGAAGGGGGUGAAAAUCCCCCGCAGCCCCCGCUGCUGUGAUGCUGACGACCCCGUAAAGACCACUGAUCGCAAGAUUGGGAAGGACGGGCGAGGAGGACGCUAAGCCAGAAGACCUGCCUGUCGGUGAUAACCAACA,AE016837.1/31933-32108 AE008789.1/23249-23074 X63012.1/351-526 AL627273.1/19647-19472 L12006.1/1016-1191,19647-19472,0,175,AL627273.1/19647-19472
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,445,AL627279.1,1,sp|AL627279.1|AL627279 Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18; complete chromosome; segment 15/20,1,102,139350,139157,86.55,CGGUAGCAUCCGUGGGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGAAAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGAGAUGAGAGCGUAAGCAGACACUGCCUCCGGCGGGAAGUCAUCAUUUCUGCUAUCCAGUCAACGGAUAACCCUCCAAGCCCGAAGACCUGCCGGCUAACGUCGCAUCUGG,AE016845.1/282347-282154 AL627279.1/139350-139157,139350-139157,0,193,AL627279.1/139350-139157
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,464,AL646070.1,1,sp|AL646070.1|AL646070 Ralstonia solanacearum GMI1000 chromosome; complete sequence; segment 14/19,1,103,4253,3997,81.27,UUACACUCGCCGCGUCCUGGUGCCCGCAGAGCCGAUCUGCAGUUAAACGGGAAGCAGGGAGCGGCCGCCCCAAACGGUGCGCCAACCUGCGCUGCCCCCGCAACGGUAAGCGAACGCCGUCGAAGGCCGCGCUACCUCUGGCCAGAAGAGGGCGCGGCGUCGCGCAGGUCCGUCCACAUGCCACUGUUCCGCGGAACGGGAAGGCGGCCGGACCCGGUUCGCCAGCCCGGAUACCGGCCAGGACAGUGGGUUUCAGA,AL646070.1/4253-3997,4253-3997,0,256,AL646070.1/4253-3997
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,473,AL646079.1,1,sp|AL646079.1|AL646079 Ralstonia solanacearum GMI1000 megaplasmid; complete sequence; segment 4/11,1,104,157144,156965,116.24,AUCCCGCCUCACGAUGAUGGUGCCCUUCCAGGGUGAAACGGGAACGCGGUGCGAUGCCGCGGCUGCCCCCGCAACUGUAAGCGACGAGUCUGCGCCAACCAGCCACCGCACGAUGCCGGGAAGGCGGCGCCAGGCGAUGACGCGCGAGCCAGGAGACCGGCCAUCUCCUUCUGUCGACGU,AL646079.1/157144-156965,157144-156965,0,179,AL646079.1/157144-156965
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,927,AP001508.1,1,sp|AP001508.1|AP001508 Bacillus halodurans genomic DNA; section 2/14.,0,105,5769,5939,76.71,ACUUUAAUAGGCUUCUUAGGUGCCUCAUUUGUAGGAGAAUAGGGAAGUUCUGAAACGACGCGGAGCCCGCCACUGUAGUCGAGGAGCUGCUACAAUACCACUGGGAAACUGGGAAGGUGUAGCAUGCGAUGAAUCGGAGCCAGGAGACCUGCCUAAGAAGAUGCGCUGUCA,AP001508.1/5769-5939,228774-228971 5769-5939 166824-166626,0,170,AP001508.1/5769-5939
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,927,AP001508.1,1,sp|AP001508.1|AP001508 Bacillus halodurans genomic DNA; section 2/14.,0,106,228774,228971,111.18,AGUGUUUGUGGACGGUAAGGUGCCCGAAGCGGCUUAAAAGGGAAUCUGGUGCAAAUCCGGAGCUGUCCCCGCAACUGUGAGUGCUACGAACGGAACGAUUUGCCACUGUACAUCCUCUACUUCUUGAGAAAUGUAUGGGAAGGCUUCUAAGUAGGUAAAGCACGAGUCAGGAGACCUGCCUUACUUCCACAAGUUUCG,AP001508.1/228774-228971,228774-228971 5769-5939 166824-166626,0,197,AP001508.1/228774-228971
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,927,AP001508.1,1,sp|AP001508.1|AP001508 Bacillus halodurans genomic DNA; section 2/14.,1,107,166824,166626,116.48,UUUCAUCGUUUGGGAACAGGUACGUUAAGUCACAUGAUAGACUUAAUGUUUAAAAGGGAAUCCGGUGCAAAUCCGGAGCGGUCCCGCCACUGUCAUAGCUGAGUUGUAACGAUAUUGUCACUGACCGUUCAUUGGUUGGGAAGACUGUUGCAAUGUUGACGCUAGAGCCAGGAGACCUGCCUGUUCUAACAGCACUGCU,AP001508.1/166824-166626,228774-228971 5769-5939 166824-166626,0,198,AP001508.1/166824-166626
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,928,AP001509.1,1,sp|AP001509.1|AP001509 Bacillus halodurans genomic DNA; section 3/14.,0,108,273579,273768,116.71,AAGCACGCUCAAGCAUUAGGUGGUUCAAACAAUCGGUUGAAUCUGAAAAGGGAAGCUGGUGAAAGUCCAGCACGGUCGCGCCACUGUAAUAAGGAGCUACAUGUGAGGAAACCACUGUCCAAAGGAUGGGAAGGUACACAUGGAGUGUUGAUCUUAAGUCAGGAGACCUGCCUAAUGUAUGCACUUGCAC,AP001509.1/273579-273768,273579-273768,0,189,AP001509.1/273579-273768
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,931,AP001512.1,1,sp|AP001512.1|AP001512 Bacillus halodurans genomic DNA; section 6/14.,0,109,161758,161939,116.57,UCGUAUAUCGCGCUGAAGGGUCGUUCAAUGUUUGAGCGUGAAAAGGGAAGUCGGUGAAAAUCCGACACGGUCCCGCCACUGUAAAUGGGAGAGGCUUGCAAGAUCCACUGUCUAGCGACGGGAAGGGGGCAAGUACUCGAUGAACAUAAGUCAGGAGACCUGCCUUUCAGUUUGAGUGUGUA,AP001512.1/161758-161939,161758-161939,0,181,AP001512.1/161758-161939
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,963,AP002567.1,1,sp|AP002567.1|AP002567 Escherichia coli O157:H7 DNA; complete genome; section 18/20.,0,110,204750,204940,91.14,CUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUGCCAUUCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGG,M57568.1/271-81 AE005628.1/5121-5311 X17416.1/46-236 U00006.1/28626-28816 AP002567.1/204750-204940,204750-204940,0,190,AP002567.1/204750-204940
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,969,AP002997.2,1,sp|AP002997.2|AP002997 Mesorhizobium loti DNA; complete genome; section 4/21.,0,111,104964,105169,126.49,CCUAAAUCCGCUCCAGACGGUCCCUUGCCCGCAACGGCAGGGGCUAAGAGGGAAUGCGGUGCGGGAUUUCGAUCUCAAAUCCGCGGCUGUCCCCGCAACUGUAAGCGAAGAGCCAAGGCCGAAAGCCACUGGGACGUUCCCGGGAAGGCGGCACCCAAGGCGAUGACCCGCGAGCCAGGAGACCUGCCGUCUGCGACAAAAGAAUC,AP002997.2/104964-105169,104964-105169 56937-56739,0,205,AP002997.2/104964-105169
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,969,AP002997.2,1,sp|AP002997.2|AP002997 Mesorhizobium loti DNA; complete genome; section 4/21.,1,112,56937,56739,102.93,UAUAGUCAUGCAGUCGUCGGUUCCGUUUUGGAGCCAAGAGGGAAUGCGGUGCGGGCGAAAUUCUUGCCCAAUGCCGUGGCUGCCCCCGCAACUGUGUGCGGUAGUCCUCUCCAUAUGCCACUGAAGAUUCGUCUUCGGGAAGGUGGGGAAGGGCGCUGAUCCGUGAGCCAGGAGACCUGCCGACGACGGCAAAACUGAC,AP002997.2/56937-56739,104964-105169 56937-56739,0,198,AP002997.2/56937-56739
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,977,AP003005.2,1,sp|AP003005.2|AP003005 Mesorhizobium loti DNA; complete genome; section 12/21.,1,113,245680,245479,109.86,UUAGAUCAUGUCAUCUCAGGUGCCGCUUCGUGACGACGGGGCGGAGAAUUGGGAAGCCGGUCAAAGUCCGGCGCUGCCCCCGCAACGGUGGUGGAGUUCAAGUCGCAACGGGAGACCACUGGGCAAAAGCCUGGGAAGGUGUCGCGACCGUCCGCAAGGACACUCCAGAGCCCGGAAACCAGCCCGAGAUUUUUGAACUCGA,AP003005.2/245680-245479,245680-245479,0,201,AP003005.2/245680-245479
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,980,AP003008.2,1,sp|AP003008.2|AP003008 Mesorhizobium loti DNA; complete genome; section 15/21.,1,114,135512,135312,131.26,UGAUUGUGCGCAUGUCGUGGUUCUCCGCGCGGCACUGCCGUAGCGGAGCUAAGAGGGAAGCCGGUGCGAUGCCGGCGCUGCCCCCGCAACUGUUAGCGGCGAGCCAAGCCCAUUGGUGUCACUGAGGCGAACGGCCUCGGGAAGACGGGCAGAGGCUUUGACCCGCGAGCCAGGAGACCUGCCACGACGAACAACGUCCAC,AP003008.2/135512-135312 AL672113.1/43141-43341,135512-135312,0,200,AP003008.2/135512-135312
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,983,AP003011.2,1,sp|AP003011.2|AP003011 Mesorhizobium loti DNA; complete genome; section 18/21.,1,115,321703,321523,111.11,AGGUCGCCGCCACUGCCUGGUGCCCGCCGCAAGCGGGAGAAUCGGGAACACGGUUGAACUCCGUGGCGUGCCCAACGCUGUAAGGGGGACCGCGCCGGUAAAUGCCACUGUCGAUGACGGGAAGGCACCGGACGCGGGUUGAUCCCGAGCCAGAAGACCGGCCUGGCAGGCAUCGUCAUCC,AP003011.2/321703-321523,321703-321523,0,180,AP003011.2/321703-321523
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,985,AP003013.2,1,sp|AP003013.2|AP003013 Mesorhizobium loti DNA; complete genome; section 20/21.,0,116,206912,207118,141.36,CUACGGUGGGUGCGUGAUGGUCCCCGCGCCGAAAGGCAAGGGGUGAAAAGGGAACACGGUGAGACCUCAAAAGGUCGAGACCGUGGCUGCCCCCGCAACUGUAAGCGGAGAGCAAGAUCCGACAUGCCACUGGCCGGCAAGGCUGGGAAGGCAGGAUUGCGCUGAGACCCGCGAGCCAGGAGACCUGCCAUCACUGAGUUGACCGGA,AP003013.2/206912-207118,206912-207118,0,206,AP003013.2/206912-207118
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1002,AP003185.1,1,sp|AP003185.1|AP003185 Clostridium perfringens str. 13 DNA; complete genome; section 1/10.,0,117,248249,248449,92.86,AUUAAAUAUUUAGAAAUAGGUUAAAUAGUUACAUUUGUAACUAUAUAUUAAAAGGGAAGUUGGGUUUAAAUCCCACGCGGUCCCGCCGCUGUAAUAGAGGAGCUUUUUGUACUUUAAGCCACUGGAAUAUAAUAUUUUGGGAAGGCCACAAAAAGUGAUGAUACUUGAGCCAGAAGACCUGCCUAUUUUUAAAACAUCAAG,AP003185.1/248249-248449,248249-248449,0,200,AP003185.1/248249-248449
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1006,AP003189.2,1,sp|AP003189.2|AP003189 Clostridium perfringens str. 13 DNA; complete genome; section 5/10.,0,118,34729,34907,86.29,GUUGAUUAACUAAUAAUUGGUGUGAUUUUCGCUUAAUAGGGAAUGAAGUUAAAGUCUUCAACUACCUCAGUAACCGUGAAGCAGACAAAAUCUCAAUAUGUCACUGCAUUUUUUGUGUGGGAAGACGAGAUGGAGGAAGAAGCAAAGUCGGGAUACCUGCCUUUUAUUUAAGUACUAUU,AP003189.2/34729-34907,224311-224132 34729-34907,0,178,AP003189.2/34729-34907
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1006,AP003189.2,1,sp|AP003189.2|AP003189 Clostridium perfringens str. 13 DNA; complete genome; section 5/10.,1,119,224311,224132,111.38,UAAUAUUUUAUAUUUUUAGGUUUGAUUUUAAUUAAAAGGGAAAGUGGUUAAAGUCCACUACAGCCCCCGCUACUGUGAUAGGAUACAAGUUUCUAUUUGACCACUGAUUAUAUAAAUUGGGAAGGGAGAAAUGAGGAUAAGCCUUAAGUCAGGAUACCUGCCUAAAGAUCAUGAACUAAG,AP003189.2/224311-224132,224311-224132 34729-34907,0,179,AP003189.2/224311-224132
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1007,AP003190.2,1,sp|AP003190.2|AP003190 Clostridium perfringens str. 13 DNA; complete genome; section 6/10.,1,120,44501,44328,76.88,AAUAAAAUAAGAGCAUUAGGUGUUUAGUAACUUAAUAGGGAAAGUUAAAAACUGCAGCCCCCGCUACUGUUGAUAAGGACGAGAAUAAAAAGCCACUGUGAUAAAUAGUCAUGGAAAGGAUUGUUUUAGGAUGAUUUAUUAGCCAGGAGACCUGCCUAGUAUGCUAUUCUUAUU,AP003190.2/44501-44328,44501-44328,0,173,AP003190.2/44501-44328
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1087,AP005029.1,1,sp|AP005029.1|AP005029 Streptomyces avermitilis genomic DNA; complete genome; section 9/30.,0,121,94508,94726,95.67,AGGCUGGGUGGUGCAGCUGGUUCGCCCCGUCCGCCAGGCGGGAGGCGUCGUAAGAGGGAACCCGGCGGGAAUCCGGGACUGCCCCGCAGCGGUGAGUGGGAACGAACGCUGUCAUACGCACUGGGCCCAAAAGGCCCGGGAAGCGACGGCCAGUAGGUGUCCUCCGUACGGAGGGCGUGCUCGCGAGUCCGAAGACCUGCCCGCUGCCCGUGCGCGACC,AP005029.1/94508-94726,94508-94726,0,218,AP005029.1/94508-94726
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1088,AP005030.1,1,sp|AP005030.1|AP005030 Streptomyces avermitilis genomic DNA; complete genome; section 10/30.,0,122,142199,142427,74.13,GCCUUGCAGGUGUUCCCAGGUCAGCCCUAGGGUUGGCGGGCCGUGGUGCUCGGGAAGCCGGUGACGGCCCCUCAGGGGGUUCAUGCCGGAGCGGCCCUCGCCACUGUGAUCGGGGAGUUCCCGUUCCGUGCCGCCGCGGGCGGCGCCACUGGUCCCUCAGGGCCGGGAAGGCAGGGACGGGCGCGUGUACCCGUAAGCCAGGAGACCGGCCACGGCAUCUCACGAAGUG,AP005030.1/142199-142427,142199-142427,0,228,AP005030.1/142199-142427
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1102,AP005044.1,1,sp|AP005044.1|AP005044 Streptomyces avermitilis genomic DNA; complete genome; section 24/30.,1,123,159223,159033,21.11,GGUCCGCUCGUACGGGCCGGUAGAGUGAGCGCGUCGUCAUCACACCCGUACGGGGGGAAGCCGGUGCAAAUCCGGCGCUGACCCGCAACCGUAUGCCGCUCGCGCGGUGAGCCGGACUGCCCCGCACAGGACGUGACCGGCUCAGGUCACCGGCAGCCCGCCGAUGACCGGCACCGUCGAGGUUCACGGGG,****    NEW  HIT  #5  ****,159190-159031,1,157,AP005044.1/159223-159033
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1104,AP005046.1,1,sp|AP005046.1|AP005046 Streptomyces avermitilis genomic DNA; complete genome; section 26/30.,1,124,196624,196437,31.99,GAGCCAUGGUGGACUGCCGGAGCCAAGUACGGCGGCAGAAGAGGAAGCCGGUGUGAGUCCGGCGCGGUCCCGCCACUGUCACCGGGGAAGUAAGUCCCCGGGAGCCAGGAACUCUCACCGCCGGUCUCGUCGAACCAGGGCGUGGACACCCUGAGUGAGGACAUAUCGCCAUGCGCGGCUGCCCGUUG,AP005046.1/196624-196437,196624-196437,0,187,AP005046.1/196624-196437
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1119,AP005083.1,1,sp|AP005083.1|AP005083 Vibrio parahaemolyticus DNA; chromosome 1; complete sequence; 11/11.,1,125,142703,142501,97.58,UAAUAUUUGCCUCAAGCUGGUGUCAUCUAGCAAUCUAGAUGGCUGAAAUGGGAAUCUGGUGAAAAUCCAGAACUGACGCGCAGCGGUAAAAGAGAACGAACGCUCAUCACGACACUGCAUUAGUUUAUGUGGGAAGUCGAGCAACUAGGUGGUGUAAACCUCGCUCUUCAGUCCGAAUACCUGCCAGCAACUGAGCCACAGCA,AP005083.1/142703-142501,142703-142501,0,202,AP005083.1/142703-142501
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1173,AP005942.1,1,sp|AP005942.1|AP005942 Bradyrhizobium japonicum USDA 110 DNA; complete genome; section 8/31.,0,126,132143,132345,108.40,GAUAAUCCAAGUCGUCGAGGUUCUCCGGUUCCCAUUGAUCCGGAGCUAAGAGGGAAGCCGGUGCAAAUGCCGGCUCUGCCCCCGCAACUGUGAGCGGCGAGCCGCUGUCCGACGAUGUCGCUGAAGCCUGCACGGCUUCGGGAAGGCCGGACAGCAGCGAUGACCAGCAAGCCAGGAGACCGGCCCCGACAAUAUAUUGGUCC,AF322013.1/174308-174510 AP005942.1/132143-132345,132143-132345,0,202,AP005942.1/132143-132345
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1178,AP005947.1,1,sp|AP005947.1|AP005947 Bradyrhizobium japonicum USDA 110 DNA; complete genome; section 13/31.,0,127,7905,8125,90.81,AAAUGGUGGCCCGGCGUUGGUUCCUGUCCUAUGACAGGCGAAGAGGGAAUGCGAUAGGGUCCGAAUCGGCAAGAUUUGGGUCCAAAAUGCAGCCGCCCCCGCGACCGUGACCGGAGAGAUGCCCGAGGCCACUGAUCCCUGACGGGAUCGGGAAGGCGGGGAUCGAAGGGCAAAACCCUGCUCCGCAAGCCGGGAGACCUGCCAGCGCGGACGAUUUUGGA,AP005947.1/7905-8125,21272-21492 24717-24919 7905-8125,0,220,AP005947.1/7905-8125
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1178,AP005947.1,1,sp|AP005947.1|AP005947 Bradyrhizobium japonicum USDA 110 DNA; complete genome; section 13/31.,0,128,21272,21492,107.99,GGCACACAGGACGGGCAUGGUGCUCGAGGUGGCGCAAAGCGCCGGAGCAUAAUCGGGAAUGGGGAUGGGCGGACCCAGUUGCGGCGCCCAAAACCCCAGCCGCCCCCGCGACUGUAAGCGGUGAGGGGCUCCGAACCGCCACUGGGCCGCAAGGUCCGGGAAGGCCGGAGAACCCCAGUGAACCGCGAGCCAGGAGACCGGCCGUGCAUGUUUUGAGGCCA,AP005947.1/21272-21492,21272-21492 24717-24919 7905-8125,0,220,AP005947.1/21272-21492
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1178,AP005947.1,1,sp|AP005947.1|AP005947 Bradyrhizobium japonicum USDA 110 DNA; complete genome; section 13/31.,0,129,24717,24919,133.03,AUCCUAGAUGCUCGCGACGGUUUCCCCCGAGAGGGGAUGAAAAGGGAAUGCGGUGCGGGGAUGUUUCCCCAAUGCCGCGGCUGCCCCCGCAACUGUAAGCGGAUAAUCCUUCGUCAGAAGCCACUGGGUCCUCGGUCCCGGGAAGGCGACGAAGUGGUGACGACCCGCGAGCCAGGAGACCUGCCGUCAGCCGUGGUCACACG,AP005947.1/24717-24919,21272-21492 24717-24919 7905-8125,0,202,AP005947.1/24717-24919
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,1183,AP005952.1,1,sp|AP005952.1|AP005952 Bradyrhizobium japonicum USDA 110 DNA; complete genome; section 18/31.,1,130,179489,179275,126.07,CGUAGAUUGAUCGGUGACGGUUCUCCGCACGGAGAUCAAAAGGGAACGUGGUGCGAGAUUGUCCCAAUGCCGGGAUUGUCCCAACGCCACGGCUGCCCCCGCAACUGUAAGCGGUGAAUCUUUCGUCAUAUGCCACUGGGAAUCUCGGUCCUGGGAAGGCGACGUAAGGUAACGACCCGCGAGCCAGGAGACCUGCCGUCAGCCGUGGUCACACG,AP005952.1/179489-179275,179489-179275,0,214,AP005952.1/179489-179275
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,2849,U45329.1,1,sp|U45329.1|AV45329 Agrobacterium vitis ribosomal operon 16S rRNA; 23S rRNA; 5S rRNA; Ile-tRNA; Ala-tRNA; fMet-tRNA genes; complete sequences.,1,131,408,194,126.56,CUAAAGUGGCAGCGUAUCGGUUCUGCAAGUGUCAAAACGCNCGCGGAUGAAAAGGGAAUACGGUGAGGACGACCCAAGUAAGGGCCGAAACCGUGGCUGCCCCCGCAACUGUGAACGGCGAGCGAUGUCCAUCAUGCCAUUGGCCCCACGGCCGAUAAGGCGGACAAAGCCCAGACCCGUGAGCCAGGAGACCUGCCGAUAAGCAUGCGCGAAAG,U45329.1/408-194,408-194,0,214,U45329.1/408-194
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,5491,AY033235.1,1,sp|AY033235.1|AY033235 Propionibacterium freudenreichii subsp. shermanii cobalamin biosynthesis locus; partial sequence.,0,132,252,496,22.86,GUGUACUAGGGUCAAUGUGCUGGCCUCGGCCAGCGCGCGUCCGCAGCGAAGCCGGUGGGAAUCCGGCGCUGUCCCGCAACGGUGAUGGGGCCCGGCCCCGAGUCCGGUCGACUGUGGACGUGUCCCCACAUUGCCCCGGCGCAGGGUCAGCCCCACGAGCUGCCUGCGCGUGCACCGCGAAGGACGGCCCGUGGAUUUGAGGUUCUUGUCCGAGCCCGCAGGCUCACGAGGGCAGCAGCGCCCUG,AY033235.1/252-496,252-496,0,244,AY033235.1/252-496
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,5492,AY033236.1,1,sp|AY033236.1|AY033236 Propionibacterium freudenreichii subsp. shermanii cobalamin biosynthesis locus; partial sequence.,1,133,563,353,102.59,GUGUAGGCUAGUAGUGCUGGUUCGGCUGCCCCACGGCAGUCGUCGCAAGAGGGAAUCCGGUGUAAUUCCGGAACUGUCCCGCAGCGGUCAAUGGGAACGACACAACGUAAGGCACUGGGCGGCAACGCCUGGGAAGUAGUAGUGGAGGAAGUCGGGAGUGAUCUCGCAAUGCCCAUGAGUCCGAAGACCUGCCAGCAGCGACAACAUCUGU,AY033236.1/563-353,563-353,0,210,AY033236.1/563-353
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,6838,AY043208.1,1,sp|AY043208.1|AY043208 Bacteroides fragilis ribonucleoside-diphosphate reductase subunit A (nrdA) and ribonucleoside-diphosphate reductase subunit B (nrdB) genes; complete cds.,0,134,560,782,85.15,UAUCUUUGCUCCCUGAUCGGUUCCGAAUAGUCAUUCCUCUAUCCGGAUUAAAAGGGAAUCGGGUGUAAAUCCCGGACAGUCCCGCUGCUGUGAAGCUCCGUCUGAAUUUCCGAUAACAACUGUUGCCACUGGGAUACCUUUUUGUAAAUAGAUAAGGAGUCACCGGGAAGGCGUCGGAAACAAGGAGUCAGUCAGAAGACCUGCCGCUUAUCAAAGGCUGUUU,AY043208.1/560-782,560-782,0,222,AY043208.1/560-782
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,38829,AJ000758.1,1,sp|AJ000758.1|BMAJ758 Bacillus megaterium 16kb genomic sequence; cobalamin operon,0,135,1489,1668,78.33,CAUAUCGUGCAAAAAAAAGGUGCGUAAUAUUUACAUUGCGUUAAAUGGGAAGUCUGGUGUGAAGCCAGCGCGUACCCGCCACUGUGAAGAGGAGCUGAUUGCAUUUGCCACUGUAUUCGGGAAGGCGCAAUCAAGUGAUGAAUCGAAGUCAGGAAACCAGCCUUUUUCUAAUGCUAAGCU,AJ000758.1/1489-1668,1191-1370 1489-1668,0,179,AJ000758.1/1489-1668
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,38829,AJ000758.1,1,sp|AJ000758.1|BMAJ758 Bacillus megaterium 16kb genomic sequence; cobalamin operon,0,136,1191,1370,112.58,UCAAACAGCAACAGUAAAGGUGCCAAGAAGGCUUAAUAGGGAAACUGGUGAAAGACCAGUACUGCCCCCGCAACUGUAAGUGUGGACGAACGAGUAUAACCACUGUGAAAAAAUCACGGGAAGGUUCUCAAGUAGAAUGAUACACAAGUCAGGAGACCUGUCUUUAUUGUGAAGUUUCUA,AJ000758.1/1191-1370,1191-1370 1489-1668,0,179,AJ000758.1/1191-1370
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,39774,AJ223978.1,1,sp|AJ223978.1|BS43KBDNA Bacillus subtilis 42.7kB DNA fragment from yvsA to yvqA.,0,137,23548,23687,38.90,GGAUACGAAUGUCAAAUAGGUGCCGGUCCGUGAACAACAGCCGGCUUAAAAGGGAAACCGGUAAAAGCCGGUGCGGUCCCGCCACUGUAAUUGGCCAAGCGCCAAGAGCCAGGAUACCUGCCUGUUUGAUCAGCACGAAU,AJ223978.1/23548-23687 Z99120.2/190378-190239,23548-23687,0,139,AJ223978.1/23548-23687
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42397,Z99120.2,1,sp|Z99120.2|BSUB0017 Bacillus subtilis complete genome (section 17 of 21): from 3213330 to 3414388.,1,138,190378,190239,38.90,GGAUACGAAUGUCAAAUAGGUGCCGGUCCGUGAACAACAGCCGGCUUAAAAGGGAAACCGGUAAAAGCCGGUGCGGUCCCGCCACUGUAAUUGGCCAAGCGCCAAGAGCCAGGAUACCUGCCUGUUUGAUCAGCACGAAU,AJ223978.1/23548-23687 Z99120.2/190378-190239,190378-190239,0,139,Z99120.2/190378-190239
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42959,BX248334.1,1,sp|BX248334.1|BX248334 Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14,1,139,308192,308010,89.67,CCACGCUCUGCAUGCCAAUAUUCUUCCCGUCAGGCGAUGACGAUGCAGGAAGCCGGUGAGAAUCCGGCGCGGUCCCGCCACUGUCACCGGGGAGCGACCCUCAUAAGCCACGGCCACAGGCUGGAAGGCGAGGCAAGCAACGAUCCGGGAGCCAGGAGACUCGCGUCAUCGCGUCCUGCCACC,BX248334.1/308192-308010,308192-308010,0,182,BX248334.1/308192-308010
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42962,BX248337.1,1,sp|BX248337.1|BX248337 Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14,1,140,276050,275850,84.20,GGCAUCGAGCGGGGCAACGAUGCUUCGCGAGAGGGAACCUGGUGAGAAUCCGGGACUGUCCCGCAGCGGUAUGCAGGAACGACCGCCGUCUUGGAAGUAGACAAGCACUGGUCUCAACGACUGGGAAGCGACGGCCAGUAGGAGCACCCACCGGGUGCGAGCCUGCGAGUCCGAAGACCUGCCAGCCGUGCCGGACGCGCC,BX248337.1/276050-275850 AE006995.1/10153-9953 Z95585.1/22327-22127,276050-275850,0,200,BX248337.1/276050-275850
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42986,BX294140.1,1,sp|BX294140.1|BX294140 Pirellula sp. strain 1 complete genome; segment 8/24,0,141,211185,211419,58.62,UCCGAGGUGACUGAUUUGGUUUCUGCCGAGUCAGUGAACAGGGAACUCCGGUGAAAUUCCGGGACGGUCCGGCCGCUGUGUGCCGCCAGAGAUCUUCCAAGUGAAGUCUCAUUGUUUGCUUUUCUAUUCAGCCAUUGCUCGUGUUUUCGCGUUUCAACGUGAACGUGAGUGAGAAGGCCAUGAGCAAACAAAGUGGUGGUGAGUCAGAAGACCUACCUCGUACAAGACGUUUUGG,****    NEW  HIT  #6  ****,,2,0,BX294140.1/211185-211419
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,42990,BX294144.1,1,sp|BX294144.1|BX294144 Pirellula sp. strain 1 complete genome; segment 12/24,0,142,76053,76292,56.24,GCAACGUUACGUGGUGCCGGUGUUCCAAAUCUUGGAUCACUGGGAACAGGGAACUUCGGUGAGAUUCCGAGACGGCCCGGCCGCUGUAUCCGAUGCGAAGUUGCUGACUUGGCAACUUCCAAGCAAACAUUCCUCUUGUGCCAUUGUCGUUGAUCGGAAUUAUCCGUGACGGACGAGAAGGCGAGCGUUUGCGAGUUUGCAUCGGGAGUCAGAAGACCUACCACGAAACGGACACUAUGU,****    NEW  HIT  #7  ****,,2,0,BX294144.1/76053-76292
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,43005,BX321858.1,1,sp|BX321858.1|BX321858 Nitrosomonas europaea ATCC 19718; complete genome; segment 3/10,1,143,81804,81577,118.46,UCUGCGCCCCUUGUUUGAGGUGUCCCAGAUGCAUUUGCACGAGGGAUGAAACGGGAAGCCGGUGCGCGCUGGAAUCAGCCAGCGCAAUGCCGGCACUGCCCCCGCAACGGUAAAUGAGUCAAUGAUCUGCACACGCCACUGUGCUGUAUGGCACGGGAAGGCGCAGAAUCAGGAAAACACAGCUUCCGCUCAUAAGUCCGGAGACCGGCCUGAAGCAAUAUCAUGUUA,BX321858.1/81804-81577,81804-81577,0,227,BX321858.1/81804-81577
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,43018,BX569694.1,1,sp|BX569694.1|BX569694 Synechococcus sp. WH8102 complete genome; segment 6/7,0,144,273573,273792,21.38,CCCCUAGGGUUUGGGUCUGGUUUCAGCGGGGAUCAGCCGCUGAUGGAAACGGGGAAAGAACGGUGCAAAUCCGUCGCUGUCCCGCAGCUGUAAAGCGUCCGGCCCCGCCGGCGUCAGUCAGAACGCCCGCCAGGAGCACUACCGACGAGGAUCGACUUUGACCAAUCUUCUGGCUUCUCCCCGGCCUCUGCGCCAGGCCGCCGUUGCCGCAUUGGCCUUG,****    NEW  HIT  #8  ****,,2,0,BX569694.1/273573-273792
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,43025,BX572095.1,1,sp|BX572095.1|BX572095 Prochlorococcus marinus MIT9313 complete genome; segment 1/7,1,145,267357,267199,21.03,UGAUUGAAUCCAUCAAUCGGUUUCAGCAGGGAUCAGCUGCUGAAGGAAACGGGGAAAGUUCGGCGAAAAUCCGGCACUGUCCCGCAGCUGUAAAGCGCAACCACCCUUCUUAGAGCACUUGCGCGAGUCAGAAUACCCGCCGAAUUUCCAUCGACGAGG,BX572095.1/267357-267199,267357-267199,0,158,BX572095.1/267357-267199
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,49589,M10112.1,1,sp|M10112.1|ECBTUB E.coli btuB gene for the vitamin B12 receptor protein BtuB.,0,146,56,247,82.54,CUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUCGCCAUUCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGG,M10112.1/56-247,56-247,0,191,M10112.1/56-247
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro03.dat.fasta.gz,49590,X17416.1,1,sp|X17416.1|ECBTUBPR Escherichia coli btuB gene promoter region,0,147,46,236,91.14,CUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUGCCAUUCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGG,M57568.1/271-81 AE005628.1/5121-5311 X17416.1/46-236 U00006.1/28626-28816 AP002567.1/204750-204940,46-236,0,190,X17416.1/46-236
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/vrl.dat.fasta.gz,192022,U27616.3,1,sp|U27616.3|SV27616 Stealth virus 1 clone 3B313T3.,1,0,1255,1032,114.88,UCGCUCGCUUCAGGAAACGGUUCUGCCCGAGAGGGUGGAUGAAAAGGGAACACGGUGAAGCAUUAAAUUGCUGAUGCCGAGACUGCCCCCGCAACUGUAACCGGAGAGUCAUCCUCCUAUGAUCGUAUCUUACGAUUAUAGCCACUGAGCAUUCGUGUUCGGGAAGGCGGAGGACCGAUGAAGACCCGGAAGUCAGGAGACCUGCCGUAUCCAGUCACCCAUGG,U27616.3/1255-1032,1255-1032,0,223,U27616.3/1255-1032
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,1549,AJ278144.1,1,sp|AJ278144.1|ECO278144 Escherichia coli partial genomic DNA for pathogenicity island; shiga toxin producing strain 4797/97,1,1,22351,22163,38.35,CAGUAAUAUCCAGUUGUCGGUCCUGCGAGUUAAUAGGGAAUCCAGUGCAAAUCCGAAACUGACACGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUAAUGUGGACACGGUCAUCCGGUGGGUGGUCAUCUCUUUGUAUCUUCAGAUGCCCUUCUAGGUCUGAAGACCUGUCGGUUAACGUCGCAUCUGG,AJ278144.1/22351-22163,22351-22163,0,188,AJ278144.1/22351-22163
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,2920,M57568.1,1,sp|M57568.1|ECTRMA Escherichia coli vitamin B-12 binding protein (btuB) gene; partial cds; and m-5-U54 transfer RNA methyltransferase (trmA) gene; complete cds.,1,2,271,81,91.14,CUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUGCCAUUCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGG,M57568.1/271-81 AE005628.1/5121-5311 X17416.1/46-236 U00006.1/28626-28816 AP002567.1/204750-204940,271-81,0,190,M57568.1/271-81
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,3293,U00006.1,1,sp|U00006.1|ECUW89 E. coli chromosomal region from 89.2 to 92.8 minutes.,0,3,28626,28816,91.14,CUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUGCCAUUCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGG,M57568.1/271-81 AE005628.1/5121-5311 X17416.1/46-236 U00006.1/28626-28816 AP002567.1/204750-204940,28626-28816,0,190,U00006.1/28626-28816
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13792,Z98756.1,1,sp|Z98756.1|MLCB2492 Mycobacterium leprae cosmid B2492.,0,4,29319,29499,87.74,GUACUAUAUGCGACACUGUGUAUCUGUAAAGGCGAUGACGAUGCAGGAAGUCGGUGCAAAGCCGGCGCGGUCCCGCCACUGUAAUCGGGGAGCGACCCUCGUAGGCCACGGCCAUUGGCUGGAAGGCGAGGCAAGCGGUGAUCCGAGAGCCAGGAAACUCGCGUCAUCGCGUCCUGCUAAC,AL583923.1/215513-215333 Z98756.1/29319-29499,29319-29499,0,180,Z98756.1/29319-29499
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13797,Z94723.1,1,sp|Z94723.1|MLCB33 Mycobacterium leprae cosmid B33.,0,5,23034,23246,88.90,CACACGGCGCCAGUAUCGAGUGAUGCUAGCUCAGCAUCGCGAGAGGGAACCCGGUGAGAAUCCGGGACUGUCCCGCAGCGGUAUGCAGGAACGACCGCCGUCUGGAAGCACUGGUCUUAGAAAAAUCCGAGACUGGGAAGCGAUGGCCAUUAGAAGCACCUAUCCAGUGCGCGCCUGCGAGUCCGAAGACCUGCCGGCUGUGUCGGGCGCGCC,AL583920.1/130414-130202 Z94723.1/23034-23246,23034-23246,0,212,Z94723.1/23034-23246
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13831,AL583920.1,1,sp|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10,1,6,130414,130202,88.90,CACACGGCGCCAGUAUCGAGUGAUGCUAGCUCAGCAUCGCGAGAGGGAACCCGGUGAGAAUCCGGGACUGUCCCGCAGCGGUAUGCAGGAACGACCGCCGUCUGGAAGCACUGGUCUUAGAAAAAUCCGAGACUGGGAAGCGAUGGCCAUUAGAAGCACCUAUCCAGUGCGCGCCUGCGAGUCCGAAGACCUGCCGGCUGUGUCGGGCGCGCC,AL583920.1/130414-130202 Z94723.1/23034-23246,130414-130202,0,212,AL583920.1/130414-130202
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13834,AL583923.1,1,sp|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete genome; segment 7/10,1,7,215513,215333,87.74,GUACUAUAUGCGACACUGUGUAUCUGUAAAGGCGAUGACGAUGCAGGAAGUCGGUGCAAAGCCGGCGCGGUCCCGCCACUGUAAUCGGGGAGCGACCCUCGUAGGCCACGGCCAUUGGCUGGAAGGCGAGGCAAGCGGUGAUCCGAGAGCCAGGAAACUCGCGUCAUCGCGUCCUGCUAAC,AL583923.1/215513-215333 Z98756.1/29319-29499,215513-215333,0,180,AL583923.1/215513-215333
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,13861,AL672113.1,1,sp|AL672113.1|MLO672113 Mesorhizobium loti R7A symbiosis island; segment 2/4,0,8,43141,43341,131.26,UGAUUGUGCGCAUGUCGUGGUUCUCCGCGCGGCACUGCCGUAGCGGAGCUAAGAGGGAAGCCGGUGCGAUGCCGGCGCUGCCCCCGCAACUGUUAGCGGCGAGCCAAGCCCAUUGGUGUCACUGAGGCGAACGGCCUCGGGAAGACGGGCAGAGGCUUUGACCCGCGAGCCAGGAGACCUGCCACGACGAACAACGUCCAC,AP003008.2/135512-135312 AL672113.1/43141-43341,43141-43341,0,200,AL672113.1/43141-43341
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,15672,Z95585.1,1,sp|Z95585.1|MTCY22G8 Mycobacterium tuberculosis H37Rv complete genome; segment 49/162,1,9,22327,22127,84.20,GGCAUCGAGCGGGGCAACGAUGCUUCGCGAGAGGGAACCUGGUGAGAAUCCGGGACUGUCCCGCAGCGGUAUGCAGGAACGACCGCCGUCUUGGAAGUAGACAAGCACUGGUCUCAACGACUGGGAAGCGACGGCCAGUAGGAGCACCCACCGGGUGCGAGCCUGCGAGUCCGAAGACCUGCCAGCCGUGCCGGACGCGCC,BX248337.1/276050-275850 AE006995.1/10153-9953 Z95585.1/22327-22127,22327-22127,0,200,Z95585.1/22327-22127
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,24104,AL603642.1,1,sp|AL603642.1|RME603642 Rhizobium meliloti (Sinorhizobium meliloti) 1021 complete pSymB; segment 1/6,0,10,66246,66476,117.27,ACAUUAACUGGGACCGACGGUUCCCCUACCCGUGAGGUGGAGGGGAUUAAUAGGGAACACGGUGCGGACGACCCAAGAGGGACCAAAACCGUGGCUGCCCCCGCAACUGUAAGCGGAUCGUCGUUCAUCCUUGUGGCGCCAAGGCGCCAGCCACUGCGCGCGUUGCGCGGGAAGGCAGAUGAGCGACUCUGUCCGUGAGCCAGGAGACCUGCCGUCAAAUCGAUCCAACGU,AL603642.1/66246-66476,66246-66476,0,230,AL603642.1/66246-66476
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,24106,AL603644.1,1,sp|AL603644.1|RME603644 Rhizobium meliloti (Sinorhizobium meliloti) 1021 complete pSymB; segment 3/6,0,11,10383,10598,127.98,CAUACCAGAUCAUGUGAUGGUUCCGCCCGACUGAAGAACGGCGGAUGAAAAGGGAACACGGUGAGGACGACCCAUCAGGGGCUAAAACCGUGGCUGCCCCCGCAACUGUGAGCGGCGAGCAAAGUCCAAGGAUGCCAUUGGCCAUGAAUCGGCUGAUAAGGCGGACAAAGCUACGACCCGCAAGCCAGGAGACCUGCCAUCACCUUGGGCGACACG,AL603644.1/10383-10598,10383-10598,0,215,AL603644.1/10383-10598
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,26287,S70737.1,1,sp|S70737.1|S70737 nfeC [Bradyrhizobium japonicum; USDA110; Genomic; 2190 nt].,1,12,368,167,105.28,GAUAAUCCAAGUCGUCGAGGUUCUCCGGUUCCCAUUGAUCCGGAGCUAAGAGGGAAGCCGGUGCAAAUGCCGGCUCUGCCCCGCAACUGUGAGCGGCGAGCCGCUGUCCGACGAUGUCGCUGAAGCCUGCACGGCUUCGGGAAGGCCGGACAGCAGCGAUGACCAGCAAGCCAGGAGACCGGCCCCGACAAUAUAUUGGUCC,S70737.1/368-167,368-167,0,201,S70737.1/368-167
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,28256,AJ276618.1,1,sp|AJ276618.1|SCO276618 Streptomyces coelicolor nrdX gene; nrdA gene and nrdB gene,0,13,56,223,25.70,UCGCGUCCCCCGGCACAAGAUGUAUGCUCAUGCUCGCUGUCGCCGCAGGGGAAUCCGGUGCGAAUCCGGAACUGUCCCGCAACGGUGUACUUGCGUGCAUCCGUACGUCUUCGCACGUGCGCGCACGCCUGUCCAGUCCGAGGACCUGCCGACAGUGCGCCCGGCCGC,AJ276618.1/56-223 AL939123.1/7488-7321,56-223,0,167,AJ276618.1/56-223
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,28274,AL939107.1,1,sp|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29,0,14,133849,134073,106.52,AGGCUGGCCCGUGCAGCUGGUUCGCCCCGUCCGCCAGGCGGGAUGCGUCGCAAGAGGGAACCCGGUGGGAAUCCGGGACUGCCCCGCAGCGGUGAGCGGGAACGACCGCCGUCAUACGCACUGGGCCCGACGUACCGGGCCCGGGAAGCGACGGCCAGUAGGUGUCCUCCGGACAGGAGGGUGGGCCCGCGAGUCCGAAGACCUGCCACCUGCCCGCGCGCGGAC,AL939107.1/133849-134073,141879-142126 140625-140436 147400-147583 133849-134073,0,224,AL939107.1/133849-134073
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,28274,AL939107.1,1,sp|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29,0,15,141879,142126,98.99,ACGCUGAUGCCCGCAGUUGGUUCGCGCCUCCUGUCCGAUCAGGUCUCGGCGGCGCGACGCAAGAGGGAACCCGGUGGGAAUCCGGGACUGUCCCGCAGCGGUGAGUGGGAACGAAAGCCGUCAACAGCACUGGGCCCCAGAUGAGUUGGAGCCCGGGAAGCGACGGCCGGUAGGUGCCCGCCGGUGAUCCGUGUCCCCGGUGAGCGCGCCCACGAGUCCGAAGACCUGCCACUGCGCCCGUACGCGAU,AL939107.1/141879-142126,141879-142126 140625-140436 147400-147583 133849-134073,0,247,AL939107.1/141879-142126
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,28274,AL939107.1,1,sp|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29,0,16,147400,147583,95.76,CAGACCGUAGUAUCAGCGGGUCAUCGCCGCGACGGGAGACAGGAAGCCGGUGUGAAUCCGGCACGGUCCCGCCACUGUGACCGGGGAGUGCACCCUUCGACACGCCACUGCGCGCCGCGCGGGAAGGCCAGGGAGGAGCGUCGAUCCGGGAGUCAGGACACUGGCCUGUCGCGGGCCCGUUCCG,AL939107.1/147400-147583,141879-142126 140625-140436 147400-147583 133849-134073,0,183,AL939107.1/147400-147583
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,28274,AL939107.1,1,sp|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29,1,17,140625,140436,82.39,GGACGCUGAUGGGAUGAUGGCCGGCGACAGGGCGACGACGGUCCGAGGAAGCCGGUGCGAAUCCGGCGCGGUCCCGCCACUGUGAUCGGUGAGCGGAUCCCGAAGUUGCCACUGCCCCGGUAGGGGCGGGAAGGCCGGGACGAGCUGUGACCCGGGAGCCAGGAAACUCACGUCGUCGCCUCCUCGACGG,AL939107.1/140625-140436,141879-142126 140625-140436 147400-147583 133849-134073,0,189,AL939107.1/140625-140436
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,28277,AL939110.1,1,sp|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29,0,18,156680,156867,27.89,GGGCCGUGGUGGACUUCCGGGGCCAUCUACGGCGGCAGAAGAGGAAGCCCGGUGCGAAUCCGGCGCGGUCCCGCCACUGUGACCGGGGACAGGAUCCCCGGGAGCCAGGAACUCUCGCCGCCGUGCUCUUCGAACCAGGGCGCGGACACCCUGAGUGAGGACCUAUCGCCAUGCGCGGCUGCCGUUCC,AL939110.1/156680-156867,156680-156867,0,187,AL939110.1/156680-156867
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,28290,AL939123.1,1,sp|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29,1,19,7488,7321,25.70,UCGCGUCCCCCGGCACAAGAUGUAUGCUCAUGCUCGCUGUCGCCGCAGGGGAAUCCGGUGCGAAUCCGGAACUGUCCCGCAACGGUGUACUUGCGUGCAUCCGUACGUCUUCGCACGUGCGCGCACGCCUGUCCAGUCCGAGGACCUGCCGACAGUGCGCCCGGCCGC,AJ276618.1/56-223 AL939123.1/7488-7321,7488-7321,0,167,AL939123.1/7488-7321
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,28292,AL939125.1,1,sp|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29,1,20,243385,243171,84.83,CCUGCUUGUGCCCACCCCGGUGGGAGCACUACUGUCGCCACGCCUUGGUGAACGGGAAAUCCGGUGUGAUGCCGGUGCGGCCCUCGCCACUGUGAAUCGGGAAGUCCGGCUCCGGCCCUGACGGGCAGCCACUGGAUCGCUUGCGGUCCGGGAAGGCGGAGCACGGGCGGUGGUACCCGUAAGCCAGGAGACCGGCCAAGGCGCGUCGUCCAUCC,AL939125.1/243385-243171,243385-243171,0,214,AL939125.1/243385-243171
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,30220,AL591785.1,1,sp|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12,0,21,88210,88413,109.84,UUAGAUGAGGACACUCAAGGUGCCGCCUCGAAGGGAGGGCGGAGAAUUGGGAAGCCGGUCAAAUCCCGGCGCUGCCCCCGCAACGGUGGUGGAGCGAACAGCCACGGCAGAAGGCCACUGGACACCGCGUCCGGGAAGGCGCCGGGCAGGUCCCUUGCGGACGGCUCCAGAGCCCGGAAACCAGCCUUGAAGCAGAAAUAGACC,AL591785.1/88210-88413,88210-88413,0,203,AL591785.1/88210-88413
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,30223,AL591788.1,1,sp|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12,1,22,218367,218154,104.24,GGCCAUAUGCCGCCGUCAGGUGCCCGCGAAAUGCGGGGGAAUCGGGAAGCCGGUGCAGUUCCGGCACGUGCCCAACGCUGUGAAGGGGACGUUCUCGCCAAAAAGGGCUCUGAAUCUUUUCAGAGCUUUGCCACUGAAUAUUGAAGCUAUUCGGGAAGGCGGCGCGAACGGAUGAUCCGAAGUCAGAAGACCGGCCUGGCGAGAUAGACCGGCC,AL591788.1/218367-218154,218367-218154,0,213,AL591788.1/218367-218154
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,30224,AL591789.1,1,sp|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete chromosome; segment 8/12,1,23,35311,34896,39.05,AAUUAACGCAGUAUGGAUGGUUCUCUCGUGCCGAGGUGGGGCGAGGGAGUAAAUGGGAAUGCGAAGGGGCGGACCCACGCCGGGCGCCCUUAUCGCAGCCGACCCCGCGACUGUAGAACGGUCAGGGUUCGCCAUCGGGCAUUUCGCCGGAUUUCAACGCGCUGCAUGGGCAGUCUCGUGAAGUUUGGCGGCAUGUCGGAAAAGCCACUGGCGUGGCAUUGCGAUCAGCCGGGCAGGACGCCUCUUCUUCUACGAAUCGUCCGCCUUUCGCGAUGCCGCAAACGCCGGGAAGGCGAGGCGAGCCCGUUCGGUCUUUUGCCGCAUCGUUUUUCGGGCCGAGCCGGUCCGGCGAACGUGCGGCCAUGAGGAUCGUGACGCCGUGAGCCAGGAGACCUGCCAUCCGUCAGGGCAUUCCG,AL591789.1/35311-34896,35311-34896,0,415,AL591789.1/35311-34896
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,34652,M89481.1,1,sp|M89481.1|STBTUB Salmonella typhimurium vitamin B12 transport protein (btuB) gene; complete cds.,0,24,311,504,80.27,CGGUAGCAUCCGUGGGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGAAAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGAGAUGAGAGCGUAAGCAGAAACUGCCUCCGGCGGGAAGUCAUCAUUUCUGCUAUCCAGCCAACGGAUAACCCUCCAAGCCCGAAGACCUGCCGGCUAACGUCGCAUCUGG,M89481.1/311-504,311-504,0,193,M89481.1/311-504
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,34662,X63012.1,1,sp|X63012.1|STCBIA S.typhimurium cbiA gene 5'-region,0,25,351,526,102.60,CCAUAACGUAAACCAACAGGUUUGCCACAUUUGUGGUAGGGAAGGGGGUGAAAAUCCCCCGCAGCCCCCGCUGCUGUGAUGCUGACGACCCCGUAAAGACCACUGAUCGCAAGAUUGGGAAGGACGGGCGAGGAGGACGCUAAGCCAGAAGACCUGCCUGUCGGUGAUAACCAACA,AE016837.1/31933-32108 AE008789.1/23249-23074 X63012.1/351-526 AL627273.1/19647-19472 L12006.1/1016-1191,351-526,0,175,X63012.1/351-526
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,35166,M57569.1,1,sp|M57569.1|STTRMA Salmonella typhimurium tRNA(m-5-U54) methyltransferase (trmA) gene; 5' end and vitamin B-12 binding protein (btuB) gene; 5' flank.,1,26,218,26,69.97,CGGUAGCAUCCGUGGGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGAAAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGAGAUGAGAGCGUAAGCAGACACCUGUCCGGCGGGAAGUCAUCAUUUCUGCUAUCCAGCCAACGGAUAACCCUCCAAGCCCGAAGACCUGCCGGCUAACGUCGCAUCUGG,M57569.1/218-26,218-26,0,192,M57569.1/218-26
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @/projects/bio/zasha/seqs/embl_release76/nonhuman-rev.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pro04.dat.fasta.gz,35253,L12006.1,1,sp|L12006.1|STVB12AA Salmonella typhimurium vitamin B12/cobalamin biosynthetic (cob) operon 5' end including: (cbiA; cbiB; cbiC; cbiD; cbiE; cbiT; cbiF; cbiG; cbiH; cbiJ; cbiK; cbiL; cbiM; cbiN; cbiQ; cbiO; cbiP; cobU; cobS; cobT) genes and regulatory protein (PocR).,0,27,1016,1191,102.60,CCAUAACGUAAACCAACAGGUUUGCCACAUUUGUGGUAGGGAAGGGGGUGAAAAUCCCCCGCAGCCCCCGCUGCUGUGAUGCUGACGACCCCGUAAAGACCACUGAUCGCAAGAUUGGGAAGGACGGGCGAGGAGGACGCUAAGCCAGAAGACCUGCCUGUCGGUGAUAACCAACA,AE016837.1/31933-32108 AE008789.1/23249-23074 X63012.1/351-526 AL627273.1/19647-19472 L12006.1/1016-1191,1016-1191,0,175,L12006.1/1016-1191
./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00174.cm @t.list 1 specfile data/RF00174.filterspec ,Rfam/cm/RF00174.cm (global),/projects/bio/zasha/seqs/embl/pln.dat.fasta.gz,94041,AK109157.1,1,sp|AK109157.1|AK109157 Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G04; full insert sequence.,0,0,8,245,97.34,CAGGUGCCCAGCCGUUUCGGUUCAGGAACGGCGGGUUCAACGGGAAGCCGGUGAGCGCAAGGCGAAGAGCCUCGCGCAAUUCCGGCGCUGCCCCCGCAACGGUCAGCGAGGAGCGUGCUGCACGACACGCCACUGUGCCCCUCUCGGGCAUGGGAAGGCGCGGCAGGCUUGCCACGGUGGAUUCGUCCGCCGCGGCCACUCGCAAGCCCGGAUACCGGCCUGACGCAAUGGGAGCCGG,AK109157.1/8-245,8-245,0,237,AK109157.1/8-245



THINGS IN Rfam THAT WEREN'T FOUND:
UCGUCAUCACACCCGUACGGGGGGAAGCCGGUGCAAAUCCGGCGCUGACCCGCAACCGUAUGCCGCUCGCGCGGUGAGCCGGACUGCCCCGCACAGGACGUGACCGGCUCAGGUCACCGGCAGCCCGCCGAUGACCGGCACCGUCGAGGUUCACGGGGUC,AP005044.1/159190-159031,157
UAUUCAGGUGCCAUUUUAGGUUUAAAAGGGAAUGUGGUUUAAUUCCACAGCAGCCCCCGCUACUGUAAUUGAGGACGAAUCUUUCACAAACCACUCUUUCAAAAAGGGAAGGGGAAGGGAAAGACAAGGGUGAAUCAUGAGCCAGGAGACCUGCCUGUAUAUGAAAGAUAAAC,AE015938.1/141777-141949,172


# hits found that weren't in Rfam: 9 (totally new = 7, overlaps hit in Rfam = 2, overlap hits with more than 10 nucs = 2,  total # hits with 0 overlap with Rfam (ignoring sequence matching) = 7)
# Rfam hits not found: 2 (no overlap of >= 10 nucs: 0)
# Rfam seqs not found: 2 (no overlap of >= 10 nucs: too tricky to calculate)