params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,26324,AL808018.7,1,sp|AL808018.7|AL808018 Mouse DNA sequence from clone RP23-473C10 on chromosome X,0,0,6452,6524,22.81,AAGAGAUAUAUGCAUAGAAAAAUGCAAAUGUACUAUUGUAUCAUGGAAAGAGGAGGAAGUCUAUUUAUCAUAU,****    NEW  HIT  #0  ****,,2,0,AL808018.7/6452-6524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,31,AJ404953.1,1,sp|AJ404953.1|AAC404953 Aiphanes aculeata chloroplast partial rps16 gene for ribosomal protein S16; exon 2,0,1,770,840,37.15,UCGAGCCGUAUGAGGAGAAAACCUCCCAUACGUUUCUAGGGGGGGCAUUGUUUAUUUACAUCUAUUCCAAU,AJ404933.1/773-843 AJ404938.1/776-846 AJ240903.1/780-850 AJ240865.1/783-853 AJ404937.1/774-844 AJ240885.1/792-862 AJ238819.1/782-852 AJ240851.1/800-870 AJ240859.1/781-851 AJ404945.1/776-846 AJ240908.1/779-849 AJ240899.1/777-847 AJ404944.1/796-866 AJ238815.1/777-847 AJ238822.1/781-851 AJ240905.1/783-853 AJ240881.1/749-819 AJ404934.1/777-847 AJ240890.1/782-852 AJ240854.1/796-866 AJ404927.1/783-853 AJ404943.1/778-848 AJ404950.1/782-852 AJ240892.1/776-846 AJ240863.1/778-848 AJ404925.1/901-971 AJ240878.1/775-845 AJ238816.1/782-852 AJ240887.1/779-849 AJ240875.1/782-852 AJ240891.1/777-847 AJ238825.1/783-853 AJ240896.1/777-847 AJ240849.1/899-969 AJ240886.1/777-847 AJ404940.1/797-867 AJ404946.1/774-844 AJ240866.1/777-847 AJ240852.1/901-971 AJ240894.1/776-846 AJ404935.1/778-848 AJ240889.1/776-846 AJ240879.1/776-846 AJ238817.1/783-853 AJ240888.1/777-847 AJ240850.1/900-970 AJ404931.1/780-850 AJ240906.1/793-863 AJ238820.1/785-855 AJ240900.1/778-848 AJ404947.1/794-864 AJ240853.1/899-969 AJ238824.1/783-853 AJ238821.1/790-860 AJ404955.1/777-847 AJ240901.1/780-850 AJ404942.1/787-857 AJ240860.1/774-844 AJ238818.1/784-854 AJ240855.1/796-866 AJ240877.1/781-851 AJ240902.1/775-845 AJ240857.1/815-885 AJ240907.1/778-848 AJ404941.1/782-852 AJ240898.1/776-846 AJ240864.1/772-842 AJ240904.1/782-852 AJ404939.1/775-845 AJ404953.1/770-840 AJ238823.1/793-863 AJ240897.1/777-847 AJ404948.1/776-846,770-840,0,70,AJ404953.1/770-840
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,86,AJ487784.1,1,sp|AJ487784.1|AAD487784 Achimenes admirabilis chloroplast partial rpl16 gene; intron 1,0,2,812,888,55.46,AGGAGCUGGAUGAGAAGAAACUCUCACGUCCAGUUCUGUAGUAGAGAUGGAAUUCCGAAAAAACCAUCAACUAUAAC,AJ487770.1/807-883 AJ487785.1/804-880 AJ487753.1/813-889 AJ487705.1/814-890 AJ487712.1/790-866 AJ487745.1/829-905 AJ487764.1/843-919 AJ487748.1/813-889 AJ487761.1/815-891 AJ487766.1/815-891 AJ487720.1/820-896 AJ487732.1/814-890 AJ487709.1/812-888 AJ487713.1/813-889 AJ487756.1/815-891 AJ487737.1/814-890 AJ487746.1/815-891 AJ487727.1/814-890 AJ487765.1/813-889 AJ487750.1/813-889 AJ487736.1/815-891 AJ487762.1/820-896 AJ487781.1/802-878 AJ487707.1/814-890 AJ487719.1/808-884 AJ487747.1/820-896 AJ487722.1/820-896 AJ487739.1/817-893 AJ487734.1/811-887 AJ487714.1/786-862 AJ487704.1/814-890 AJ487738.1/812-888 AJ487718.1/815-891 AJ487760.1/812-888 AJ487772.1/806-882 AJ487777.1/809-885 AJ487755.1/815-891 AJ487776.1/820-896 AJ487754.1/813-889 AJ487759.1/813-889 AJ487744.1/813-889 AJ487715.1/818-894 AJ487706.1/623-699 AJ487741.1/820-896 AJ487717.1/828-904 AJ487758.1/814-890 AJ487721.1/820-896 AJ487729.1/813-889 AJ487703.1/686-762 AJ487786.1/810-886 AJ487779.1/803-879 AJ487723.1/814-890 AJ487780.1/814-890 AJ487757.1/812-888 AJ487728.1/814-890 AJ487782.1/802-878 AJ487731.1/816-892 AJ487708.1/814-890 AJ487784.1/812-888 AJ487724.1/803-879 AJ487740.1/811-887 AJ487733.1/820-896 AJ487730.1/814-890 AJ487773.1/816-892 AJ487735.1/814-890,812-888,0,76,AJ487784.1/812-888
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,92,AJ247145.1,1,sp|AJ247145.1|AAF247145 Aniba affinis chloroplast partial matK gene for maturase; specimen voucher Ziburski 547 (HBG),0,3,1244,1314,35.51,UAAAGCCCUGUGCAAUGAAAAAUGCAAGCACGGCUUUUUUGGGGGGUCUUUUUACUCUAUAUCUAUUAUAU,AJ247167.1/1244-1314 AJ247170.1/1244-1314 AJ247171.1/1244-1314 AJ247173.1/1244-1314 AJ247176.1/1244-1314 AJ247178.1/1244-1314 AJ247179.1/1244-1314 AJ247181.1/1244-1314 AJ247182.1/1244-1314 AJ247186.1/1244-1314 AJ247143.1/1244-1314 AJ247144.1/1244-1314 AJ247145.1/1244-1314 AJ247191.1/1244-1314 AJ247160.1/1250-1320 AJ247163.1/1244-1314 AJ247164.1/1244-1314,1244-1314,0,70,AJ247145.1/1244-1314
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,101,AJ409091.1,1,sp|AJ409091.1|AAG409091 Anthoceros agrestis mitochondrial partial nad4 gene for NADH dehydrogenase subunit 4; including intron nad4i3,0,4,105,191,42.30,AAGAGCCGUAUGAUAGGUAACUAUCUCAUAUGGUUCGGAGAGGACUCCAGUACUCUGAUUAGUGAUUAGGGAAUGGUUUCAUUCUAU,AJ409091.1/105-191,105-191,0,86,AJ409091.1/105-191
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,102,AJ409117.1,1,sp|AJ409117.1|AAG409117 Anthoceros agrestis mitochondrial partial nad2 gene for NADH dehydrogenase subunit 2; exons 1-3,0,5,1906,2053,38.66,GAGAGCUGUAUAAUGGGCGACUAUCUAGUACGGUUCGGAGAGCACAAUGGUAGGUCAUUCUGAAAUUCUCUCAACUCUUCGCUUAGCGAACAGCGAGUGAACGCCAGCCUUGCUGCACGGCGGCUCGGUGAACAAAUUUUGACUCUAU,AJ409117.1/1906-2053,1906-2053,0,147,AJ409117.1/1906-2053
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,167,AJ224545.1,1,sp|AJ224545.1|AAL224545 Allium altaicum chloroplast psaA-trnS intergenic spacer; partial sequence (cultivar TAX1422),1,6,883,805,61.16,AGGAGCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGGAGCGGAGAUUUUUUGAAUAAAAUAAAUGAACGACCGUAAC,AJ224543.1/884-806 AJ224545.1/883-805 AJ224544.1/884-806,883-805,0,78,AJ224545.1/883-805
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,168,AJ224546.1,1,sp|AJ224546.1|AAL224546 Allium altaicum chloroplast psaA-trnS intergenic spacer; partial sequence (cultivar TAX2760),1,7,880,802,54.37,AGGACCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGGAGCGGAGAUUUUUUGAAUAAAAUAAAUGAACGACCGUAAC,AJ224546.1/880-802,880-802,0,78,AJ224546.1/880-802
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,237,AJ240903.1,1,sp|AJ240903.1|AAL240903 Attalea allenii partial rps16 gene,0,8,780,850,37.15,UCGAGCCGUAUGAGGAGAAAACCUCCCAUACGUUUCUAGGGGGGGCAUUGUUUAUUUACAUCUAUUCCAAU,AJ404933.1/773-843 AJ404938.1/776-846 AJ240903.1/780-850 AJ240865.1/783-853 AJ404937.1/774-844 AJ240885.1/792-862 AJ238819.1/782-852 AJ240851.1/800-870 AJ240859.1/781-851 AJ404945.1/776-846 AJ240908.1/779-849 AJ240899.1/777-847 AJ404944.1/796-866 AJ238815.1/777-847 AJ238822.1/781-851 AJ240905.1/783-853 AJ240881.1/749-819 AJ404934.1/777-847 AJ240890.1/782-852 AJ240854.1/796-866 AJ404927.1/783-853 AJ404943.1/778-848 AJ404950.1/782-852 AJ240892.1/776-846 AJ240863.1/778-848 AJ404925.1/901-971 AJ240878.1/775-845 AJ238816.1/782-852 AJ240887.1/779-849 AJ240875.1/782-852 AJ240891.1/777-847 AJ238825.1/783-853 AJ240896.1/777-847 AJ240849.1/899-969 AJ240886.1/777-847 AJ404940.1/797-867 AJ404946.1/774-844 AJ240866.1/777-847 AJ240852.1/901-971 AJ240894.1/776-846 AJ404935.1/778-848 AJ240889.1/776-846 AJ240879.1/776-846 AJ238817.1/783-853 AJ240888.1/777-847 AJ240850.1/900-970 AJ404931.1/780-850 AJ240906.1/793-863 AJ238820.1/785-855 AJ240900.1/778-848 AJ404947.1/794-864 AJ240853.1/899-969 AJ238824.1/783-853 AJ238821.1/790-860 AJ404955.1/777-847 AJ240901.1/780-850 AJ404942.1/787-857 AJ240860.1/774-844 AJ238818.1/784-854 AJ240855.1/796-866 AJ240877.1/781-851 AJ240902.1/775-845 AJ240857.1/815-885 AJ240907.1/778-848 AJ404941.1/782-852 AJ240898.1/776-846 AJ240864.1/772-842 AJ240904.1/782-852 AJ404939.1/775-845 AJ404953.1/770-840 AJ238823.1/793-863 AJ240897.1/777-847 AJ404948.1/776-846,780-850,0,70,AJ240903.1/780-850
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,302,AJ299549.1,1,sp|AJ299549.1|AAN299549 Aulacomnium androgynum mitochondrial partial nad2 gene for NADH dehydrogenase subunit 2; exons 1-2,0,9,966,1037,43.45,ACGAGCCGCAUGCGGGGAAACUCGCACGUGUGGUUCUGACCGGGGGGGGGAAGAAAAGCACCCUAUCGGUAU,AJ299549.1/966-1037,966-1037,0,71,AJ299549.1/966-1037
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,314,AJ240902.1,1,sp|AJ240902.1|AAR240902 Allagoptera arenaria partial rps16 gene,0,10,775,845,37.15,UCGAGCCGUAUGAGGAGAAAACCUCCCAUACGUUUCUAGGGGGGGCAUUGUUUAUUUACAUCUAUUCCAAU,AJ404933.1/773-843 AJ404938.1/776-846 AJ240903.1/780-850 AJ240865.1/783-853 AJ404937.1/774-844 AJ240885.1/792-862 AJ238819.1/782-852 AJ240851.1/800-870 AJ240859.1/781-851 AJ404945.1/776-846 AJ240908.1/779-849 AJ240899.1/777-847 AJ404944.1/796-866 AJ238815.1/777-847 AJ238822.1/781-851 AJ240905.1/783-853 AJ240881.1/749-819 AJ404934.1/777-847 AJ240890.1/782-852 AJ240854.1/796-866 AJ404927.1/783-853 AJ404943.1/778-848 AJ404950.1/782-852 AJ240892.1/776-846 AJ240863.1/778-848 AJ404925.1/901-971 AJ240878.1/775-845 AJ238816.1/782-852 AJ240887.1/779-849 AJ240875.1/782-852 AJ240891.1/777-847 AJ238825.1/783-853 AJ240896.1/777-847 AJ240849.1/899-969 AJ240886.1/777-847 AJ404940.1/797-867 AJ404946.1/774-844 AJ240866.1/777-847 AJ240852.1/901-971 AJ240894.1/776-846 AJ404935.1/778-848 AJ240889.1/776-846 AJ240879.1/776-846 AJ238817.1/783-853 AJ240888.1/777-847 AJ240850.1/900-970 AJ404931.1/780-850 AJ240906.1/793-863 AJ238820.1/785-855 AJ240900.1/778-848 AJ404947.1/794-864 AJ240853.1/899-969 AJ238824.1/783-853 AJ238821.1/790-860 AJ404955.1/777-847 AJ240901.1/780-850 AJ404942.1/787-857 AJ240860.1/774-844 AJ238818.1/784-854 AJ240855.1/796-866 AJ240877.1/781-851 AJ240902.1/775-845 AJ240857.1/815-885 AJ240907.1/778-848 AJ404941.1/782-852 AJ240898.1/776-846 AJ240864.1/772-842 AJ240904.1/782-852 AJ404939.1/775-845 AJ404953.1/770-840 AJ238823.1/793-863 AJ240897.1/777-847 AJ404948.1/776-846,775-845,0,70,AJ240902.1/775-845
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,324,AJ536481.1,1,sp|AJ536481.1|AAR536481 Actinidia arguta car. purpurea partial mitochondrial nad4 gene for NADH dehydrogenase subunit 4; exons 1-2,0,11,1433,1550,41.90,CGGAGCCGUAUGAUGCGGAAGUCUCACGUACGGUUCCCUGAGAAGGGAGUGGCUACCUACUGGAGCUUCGACCAACCACCACCGGUCAAUUCCGCUUUGGGGCCACCCCUUACUCUAC,AF451593.1/1311-1428 AJ536478.1/1432-1549 AJ536483.1/1418-1535 AJ536481.1/1433-1550 AJ536480.1/1426-1543 AJ536482.1/1420-1537 AJ536479.1/1419-1536,1433-1550,0,117,AJ536481.1/1433-1550
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,868,AB008758.1,1,sp|AB008758.1|AB008758 Atractylodes chinensis chloroplast gene for maturase K; tRNA-Lys; partial cds.,0,12,2511,2591,57.33,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU,AB008760.1/2518-2598 AB008758.1/2511-2591 AB008762.1/2512-2592 AB008761.1/2515-2595 AB008759.1/2514-2594,2511-2591,0,80,AB008758.1/2511-2591
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,869,AB008759.1,1,sp|AB008759.1|AB008759 Atractylodes japonica chloroplast gene for maturase K; tRNA-Lys.,0,13,2514,2594,57.33,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU,AB008760.1/2518-2598 AB008758.1/2511-2591 AB008762.1/2512-2592 AB008761.1/2515-2595 AB008759.1/2514-2594,2514-2594,0,80,AB008759.1/2514-2594
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,870,AB008760.1,1,sp|AB008760.1|AB008760 Atractylodes koreana chloroplast gene for maturase K; tRNA-Lys.,0,14,2518,2598,57.33,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU,AB008760.1/2518-2598 AB008758.1/2511-2591 AB008762.1/2512-2592 AB008761.1/2515-2595 AB008759.1/2514-2594,2518-2598,0,80,AB008760.1/2518-2598
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,871,AB008761.1,1,sp|AB008761.1|AB008761 Atractylodes lancea chloroplast gene for maturase K; tRNA-Lys.,0,15,2515,2595,57.33,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU,AB008760.1/2518-2598 AB008758.1/2511-2591 AB008762.1/2512-2592 AB008761.1/2515-2595 AB008759.1/2514-2594,2515-2595,0,80,AB008761.1/2515-2595
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,872,AB008762.1,1,sp|AB008762.1|AB008762 Atractylodes ovata chloroplast gene for maturase K; tRNA-Lys.,0,16,2512,2592,57.33,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU,AB008760.1/2518-2598 AB008758.1/2511-2591 AB008762.1/2512-2592 AB008761.1/2515-2595 AB008759.1/2514-2594,2512-2592,0,80,AB008762.1/2512-2592
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1156,AB012729.1,1,sp|AB012729.1|AB012729 Rhododendron ovatum chloroplast matK gene for ribosomal maturase; complete cds.,0,17,2126,2185,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2126-2185,0,59,AB012729.1/2126-2185
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1157,AB012730.1,1,sp|AB012730.1|AB012730 Rhododendron stamineum chloroplast matK gene for ribosomal maturase; complete cds.,0,18,2088,2147,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2088-2147,0,59,AB012730.1/2088-2147
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1158,AB012731.1,1,sp|AB012731.1|AB012731 Rhododendron albiflorum chloroplast matK gene for ribosomal maturase; complete cds.,0,19,2124,2183,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2124-2183,0,59,AB012731.1/2124-2183
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1159,AB012732.1,1,sp|AB012732.1|AB012732 Rhododendron ponticum chloroplast matK gene for ribosomal maturase; complete cds.,0,20,2122,2181,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2122-2181,0,59,AB012732.1/2122-2181
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1160,AB012733.1,1,sp|AB012733.1|AB012733 Rhododendron semibarbatum chloroplast matK gene for ribosomal maturase; complete cds.,0,21,2123,2182,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2123-2182,0,59,AB012733.1/2123-2182
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1161,AB012734.1,1,sp|AB012734.1|AB012734 Rhododendron luteum chloroplast matK gene for ribosomal maturase; complete cds.,0,22,2122,2181,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2122-2181,0,59,AB012734.1/2122-2181
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1162,AB012735.1,1,sp|AB012735.1|AB012735 Rhododendron canadense chloroplast matK gene for ribosomal maturase; complete cds.,0,23,2113,2172,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2113-2172,0,59,AB012735.1/2113-2172
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1164,AB012737.1,1,sp|AB012737.1|AB012737 Rhododendron albrechtii chloroplast matK gene for ribosomal maturase; complete cds.,0,24,2119,2178,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2119-2178,0,59,AB012737.1/2119-2178
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1165,AB012738.1,1,sp|AB012738.1|AB012738 Rhododendron pentaphyllum chloroplast matK gene for ribosomal maturase; complete cds.,0,25,2127,2186,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2127-2186,0,59,AB012738.1/2127-2186
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1166,AB012739.1,1,sp|AB012739.1|AB012739 Rhododendron nipponicum chloroplast matK gene for ribosomal maturase; complete cds.,0,26,2110,2169,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2110-2169,0,59,AB012739.1/2110-2169
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1167,AB012740.1,1,sp|AB012740.1|AB012740 Rhododendron primuliflorum chloroplast matK gene for ribosomal maturase; complete cds.,0,27,2057,2116,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2057-2116,0,59,AB012740.1/2057-2116
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1168,AB012741.1,1,sp|AB012741.1|AB012741 Rhododendron ferrugineum chloroplast matK gene for ribosomal maturase; complete cds.,0,28,2100,2159,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2100-2159,0,59,AB012741.1/2100-2159
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1169,AB012742.1,1,sp|AB012742.1|AB012742 Rhododendron javanicum chloroplast matK gene for ribosomal maturase; complete cds.,0,29,2102,2161,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2102-2161,0,59,AB012742.1/2102-2161
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1170,AB012743.1,1,sp|AB012743.1|AB012743 Rhododendron santapaui chloroplast matK gene for ribosomal maturase; complete cds.,0,30,2137,2196,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2137-2196,0,59,AB012743.1/2137-2196
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1171,AB012744.1,1,sp|AB012744.1|AB012744 Rhododendron camtschaticum chloroplast matK gene for ribosomal maturase; complete cds.,0,31,2011,2070,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2011-2070,0,59,AB012744.1/2011-2070
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1173,AB012746.1,1,sp|AB012746.1|AB012746 Rhododendron wadanum chloroplast matK gene for ribosomal maturase; complete cds.,0,32,2124,2183,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2124-2183,0,59,AB012746.1/2124-2183
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1174,AB012747.1,1,sp|AB012747.1|AB012747 Rhododendron indicum chloroplast matK gene for ribosomal maturase; complete cds.,0,33,2121,2180,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2121-2180,0,59,AB012747.1/2121-2180
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1176,AB012749.1,1,sp|AB012749.1|AB012749 Rhododendron tashiroi chloroplast matK gene for ribosomal maturase; complete cds.,0,34,2122,2181,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2122-2181,0,59,AB012749.1/2122-2181
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1177,AB012750.1,1,sp|AB012750.1|AB012750 Rhododendron tsusiophyllum chloroplast matK gene for ribosomal maturase; complete cds.,0,35,2122,2181,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2122-2181,0,59,AB012750.1/2122-2181
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1179,AB012752.1,1,sp|AB012752.1|AB012752 Menziesia multiflora chloroplast matK gene for ribosomal maturase; complete cds.,0,36,2118,2177,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2118-2177,0,59,AB012752.1/2118-2177
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1180,AB012753.1,1,sp|AB012753.1|AB012753 Elliottia paniculata chloroplast matK gene for ribosomal maturase; complete cds.,0,37,2095,2154,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2095-2154,0,59,AB012753.1/2095-2154
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1181,AB012754.1,1,sp|AB012754.1|AB012754 Cassiope lycopodioides chloroplast matK gene for ribosomal maturase; complete cds.,0,38,2132,2191,29.65,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC,AB012742.1/2102-2161 AB012738.1/2127-2186 AB012749.1/2122-2181 AB012752.1/2118-2177 AB012739.1/2110-2169 AB012730.1/2088-2147 AB012743.1/2137-2196 AB012753.1/2095-2154 AB012747.1/2121-2180 AB012750.1/2122-2181 AB012744.1/2011-2070 AB012741.1/2100-2159 AB012754.1/2132-2191 AB012740.1/2057-2116 AB012731.1/2124-2183 AB012737.1/2119-2178 AB012735.1/2113-2172 AB012733.1/2123-2182 AB012746.1/2124-2183 AB012732.1/2122-2181 AB012734.1/2122-2181 AB012729.1/2126-2185,2132-2191,0,59,AB012754.1/2132-2191
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,1999,AB019831.1,1,sp|AB019831.1|AB019831 Pinus krempfii chloroplast gene for maturase; partial cds.,0,39,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019831.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2000,AB019832.1,1,sp|AB019832.1|AB019832 Pinus cembra chloroplast gene for maturase; partial cds.,0,40,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019832.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2001,AB019833.1,1,sp|AB019833.1|AB019833 Pinus pumila chloroplast gene for maturase; partial cds.,0,41,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019833.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2002,AB019834.1,1,sp|AB019834.1|AB019834 Pinus koraiensis chloroplast gene for maturase; partial cds.,0,42,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019834.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2003,AB019835.1,1,sp|AB019835.1|AB019835 Pinus strobus chloroplast gene for maturase; partial cds.,0,43,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019835.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2004,AB019836.1,1,sp|AB019836.1|AB019836 Pinus monticola chloroplast gene for maturase; partial cds.,0,44,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019836.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2005,AB019837.1,1,sp|AB019837.1|AB019837 Pinus parviflora chloroplast gene for maturase; partial cds.,0,45,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019837.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2006,AB019838.1,1,sp|AB019838.1|AB019838 Pinus wallichiana chloroplast gene for maturase; partial cds.,0,46,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019838.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2007,AB019839.1,1,sp|AB019839.1|AB019839 Pinus kwangtungensis chloroplast gene for maturase; partial cds.,0,47,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019839.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2008,AB019840.1,1,sp|AB019840.1|AB019840 Pinus peuce chloroplast gene for maturase; partial cds.,0,48,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019840.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2009,AB019841.1,1,sp|AB019841.1|AB019841 Pinus armandii chloroplast gene for maturase; partial cds.,0,49,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019841.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2010,AB019842.1,1,sp|AB019842.1|AB019842 Pinus aristata chloroplast gene for maturase; partial cds.,0,50,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019842.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2011,AB019843.1,1,sp|AB019843.1|AB019843 Pinus balfouriana chloroplast gene for maturase; partial cds.,0,51,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019843.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2012,AB019844.1,1,sp|AB019844.1|AB019844 Pinus gerardiana chloroplast gene for maturase; partial cds.,0,52,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019844.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2013,AB019845.1,1,sp|AB019845.1|AB019845 Pinus bungeana chloroplast gene for maturase; partial cds.,0,53,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019845.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2014,AB019846.1,1,sp|AB019846.1|AB019846 Pinus sylvestris chloroplast gene for maturase; partial cds.,0,54,949,1037,60.39,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU,AB019849.1/949-1037 AB019847.1/949-1037 AB019846.1/949-1037 D11467.1/5046-5134 AB019853.1/949-1037 AB019852.1/949-1037 AB019854.1/943-1031 AB019851.1/949-1037 AB019850.1/949-1037 X57098.1/389-477 D17510.1/1629-1541,949-1037,0,88,AB019846.1/949-1037
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2015,AB019847.1,1,sp|AB019847.1|AB019847 Pinus tabuliformis chloroplast gene for maturase; partial cds.,0,55,949,1037,60.39,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU,AB019849.1/949-1037 AB019847.1/949-1037 AB019846.1/949-1037 D11467.1/5046-5134 AB019853.1/949-1037 AB019852.1/949-1037 AB019854.1/943-1031 AB019851.1/949-1037 AB019850.1/949-1037 X57098.1/389-477 D17510.1/1629-1541,949-1037,0,88,AB019847.1/949-1037
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2016,AB019848.1,1,sp|AB019848.1|AB019848 Pinus merkusii chloroplast gene for maturase; partial cds.,0,56,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019848.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2017,AB019849.1,1,sp|AB019849.1|AB019849 Pinus hwangshanensis chloroplast gene for maturase; partial cds.,0,57,949,1037,60.39,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU,AB019849.1/949-1037 AB019847.1/949-1037 AB019846.1/949-1037 D11467.1/5046-5134 AB019853.1/949-1037 AB019852.1/949-1037 AB019854.1/943-1031 AB019851.1/949-1037 AB019850.1/949-1037 X57098.1/389-477 D17510.1/1629-1541,949-1037,0,88,AB019849.1/949-1037
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2018,AB019850.1,1,sp|AB019850.1|AB019850 Pinus kesiya chloroplast gene for maturase; partial cds.,0,58,949,1037,60.39,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU,AB019849.1/949-1037 AB019847.1/949-1037 AB019846.1/949-1037 D11467.1/5046-5134 AB019853.1/949-1037 AB019852.1/949-1037 AB019854.1/943-1031 AB019851.1/949-1037 AB019850.1/949-1037 X57098.1/389-477 D17510.1/1629-1541,949-1037,0,88,AB019850.1/949-1037
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2019,AB019851.1,1,sp|AB019851.1|AB019851 Pinus densiflora chloroplast gene for maturase; partial cds.,0,59,949,1037,60.39,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU,AB019849.1/949-1037 AB019847.1/949-1037 AB019846.1/949-1037 D11467.1/5046-5134 AB019853.1/949-1037 AB019852.1/949-1037 AB019854.1/943-1031 AB019851.1/949-1037 AB019850.1/949-1037 X57098.1/389-477 D17510.1/1629-1541,949-1037,0,88,AB019851.1/949-1037
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2020,AB019852.1,1,sp|AB019852.1|AB019852 Pinus massoniana chloroplast gene for maturase; partial cds.,0,60,949,1037,60.39,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU,AB019849.1/949-1037 AB019847.1/949-1037 AB019846.1/949-1037 D11467.1/5046-5134 AB019853.1/949-1037 AB019852.1/949-1037 AB019854.1/943-1031 AB019851.1/949-1037 AB019850.1/949-1037 X57098.1/389-477 D17510.1/1629-1541,949-1037,0,88,AB019852.1/949-1037
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2021,AB019853.1,1,sp|AB019853.1|AB019853 Pinus yunnanensis chloroplast gene for maturase; partial cds.,0,61,949,1037,60.39,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU,AB019849.1/949-1037 AB019847.1/949-1037 AB019846.1/949-1037 D11467.1/5046-5134 AB019853.1/949-1037 AB019852.1/949-1037 AB019854.1/943-1031 AB019851.1/949-1037 AB019850.1/949-1037 X57098.1/389-477 D17510.1/1629-1541,949-1037,0,88,AB019853.1/949-1037
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2022,AB019854.1,1,sp|AB019854.1|AB019854 Pinus nigra chloroplast gene for maturase; partial cds.,0,62,943,1031,60.39,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU,AB019849.1/949-1037 AB019847.1/949-1037 AB019846.1/949-1037 D11467.1/5046-5134 AB019853.1/949-1037 AB019852.1/949-1037 AB019854.1/943-1031 AB019851.1/949-1037 AB019850.1/949-1037 X57098.1/389-477 D17510.1/1629-1541,943-1031,0,88,AB019854.1/943-1031
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2023,AB019855.1,1,sp|AB019855.1|AB019855 Pinus pinaster chloroplast gene for maturase; partial cds.,0,63,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019855.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2024,AB019856.1,1,sp|AB019856.1|AB019856 Pinus halepensis chloroplast gene for maturase; partial cds.,0,64,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019856.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2025,AB019857.1,1,sp|AB019857.1|AB019857 Pinus brutia chloroplast gene for maturase; partial cds.,0,65,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019857.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2026,AB019858.1,1,sp|AB019858.1|AB019858 Pinus heldreichii chloroplast gene for maturase; partial cds.,0,66,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019858.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2027,AB019859.1,1,sp|AB019859.1|AB019859 Pinus pinea chloroplast gene for maturase; partial cds.,0,67,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019859.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2028,AB019860.1,1,sp|AB019860.1|AB019860 Pinus canariensis chloroplast gene for maturase; partial cds.,0,68,961,1050,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,961-1050,0,89,AB019860.1/961-1050
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2029,AB019861.1,1,sp|AB019861.1|AB019861 Pinus roxburghii chloroplast gene for maturase; partial cds.,0,69,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUUUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,X57097.1/548-637 AB019861.1/955-1044 X57097.1/4948-5037,955-1044,0,89,AB019861.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2030,AB019862.1,1,sp|AB019862.1|AB019862 Picea abies chloroplast gene for maturase; partial cds.,0,70,955,1044,57.72,GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUAAUCCACUCCAU,AB019862.1/955-1044,955-1044,0,89,AB019862.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2031,AB019863.1,1,sp|AB019863.1|AB019863 Larix decidua chloroplast gene for maturase; partial cds.,0,71,955,1044,57.96,GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019863.1/955-1044 AB019865.1/967-1056,955-1044,0,89,AB019863.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2032,AB019864.1,1,sp|AB019864.1|AB019864 Abies numidica chloroplast gene for maturase; partial cds.,0,72,968,1058,57.65,GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCCUUACUGAUACUGAAGGAGCAGAUAAUCCACUCCAU,AB019864.1/968-1058,968-1058,0,90,AB019864.1/968-1058
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2033,AB019865.1,1,sp|AB019865.1|AB019865 Keteleeria davidiana chloroplast gene for maturase; partial cds.,0,73,967,1056,57.96,GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019863.1/955-1044 AB019865.1/967-1056,967-1056,0,89,AB019865.1/967-1056
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2034,AB019866.1,1,sp|AB019866.1|AB019866 Pseudolarix amabilis chloroplast gene for maturase; partial cds.,0,74,955,1044,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,955-1044,0,89,AB019866.1/955-1044
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2035,AB019867.1,1,sp|AB019867.1|AB019867 Cathaya argyrophylla chloroplast gene for maturase; partial cds.,0,75,960,1049,58.23,GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU,AB019867.1/960-1049 AB019858.1/955-1044 AB019837.1/955-1044 AB019860.1/961-1050 AB019857.1/955-1044 AB019836.1/955-1044 AB019856.1/955-1044 AB019866.1/955-1044 AB019835.1/955-1044 AB019845.1/955-1044 AB019855.1/955-1044 AB019834.1/955-1044 AB019844.1/955-1044 AB019833.1/955-1044 AB019843.1/955-1044 AB019832.1/955-1044 AB019842.1/955-1044 AB019831.1/955-1044 AB019841.1/955-1044 AB019840.1/955-1044 AY228468.1/1465-1376 AB019839.1/955-1044 AB019859.1/955-1044 AB019838.1/955-1044 AB019848.1/955-1044,960-1049,0,89,AB019867.1/960-1049
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2036,AB019868.1,1,sp|AB019868.1|AB019868 Pinus krempfii chloroplast gene for tRNA-Val (UAC); partial sequence.,0,76,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT  #1  ****,,2,0,AB019868.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2037,AB019869.1,1,sp|AB019869.1|AB019869 Pinus cembra chloroplast gene for tRNA-Val (UAC); partial sequence.,0,77,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019869.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2038,AB019870.1,1,sp|AB019870.1|AB019870 Pinus pumila chloroplast gene for tRNA-Val (UAC); partial sequence.,0,78,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019870.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2039,AB019871.1,1,sp|AB019871.1|AB019871 Pinus koraiensis chloroplast gene for tRNA-Val (UAC); partial sequence.,0,79,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019871.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2040,AB019872.1,1,sp|AB019872.1|AB019872 Pinus strobus chloroplast gene for tRNA-Val (UAC); partial sequence.,0,80,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019872.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2041,AB019873.1,1,sp|AB019873.1|AB019873 Pinus monticola chloroplast gene for tRNA-Val (UAC); partial sequence.,0,81,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019873.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2042,AB019874.1,1,sp|AB019874.1|AB019874 Pinus parviflora chloroplast gene for tRNA-Val (UAC); partial sequence.,0,82,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019874.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2043,AB019875.1,1,sp|AB019875.1|AB019875 Pinus wallichiana chloroplast gene for tRNA-Val (UAC); partial sequence.,0,83,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019875.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2044,AB019876.1,1,sp|AB019876.1|AB019876 Pinus kwangtungensis chloroplast gene for tRNA-Val (UAC); partial sequence.,0,84,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019876.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2045,AB019877.1,1,sp|AB019877.1|AB019877 Pinus peuce chloroplast gene for tRNA-Val (UAC); partial sequence.,0,85,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019877.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2046,AB019878.1,1,sp|AB019878.1|AB019878 Pinus armandii chloroplast gene for tRNA-Val (UAC); partial sequence.,0,86,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019878.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2047,AB019879.1,1,sp|AB019879.1|AB019879 Pinus aristata chloroplast gene for tRNA-Val (UAC); partial sequence.,0,87,466,524,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT  #12  ****,,2,0,AB019879.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2048,AB019880.1,1,sp|AB019880.1|AB019880 Pinus balfouriana chloroplast gene for tRNA-Val (UAC); partial sequence.,0,88,466,524,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019880.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2049,AB019881.1,1,sp|AB019881.1|AB019881 Pinus gerardiana chloroplast gene for tRNA-Val (UAC); partial sequence.,0,89,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019881.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2050,AB019882.1,1,sp|AB019882.1|AB019882 Pinus bungeana chloroplast gene for tRNA-Val (UAC); partial sequence.,0,90,466,524,31.30,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #1)   ****,,2,0,AB019882.1/466-524
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2051,AB019883.1,1,sp|AB019883.1|AB019883 Pinus sylvestris chloroplast gene for tRNA-Val (UAC); partial sequence.,0,91,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019883.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2052,AB019884.1,1,sp|AB019884.1|AB019884 Pinus tabuliformis chloroplast gene for tRNA-Val (UAC); partial sequence.,0,92,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019884.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2053,AB019885.1,1,sp|AB019885.1|AB019885 Pinus merkusii chloroplast gene for tRNA-Val (UAC); partial sequence.,0,93,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019885.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2054,AB019886.1,1,sp|AB019886.1|AB019886 Pinus hwangshanensis chloroplast gene for tRNA-Val (UAC); partial sequence.,0,94,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019886.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2055,AB019887.1,1,sp|AB019887.1|AB019887 Pinus kesiya chloroplast gene for tRNA-Val (UAC); partial sequence.,0,95,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019887.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2056,AB019888.1,1,sp|AB019888.1|AB019888 Pinus densiflora chloroplast gene for tRNA-Val (UAC); partial sequence.,0,96,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019888.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2057,AB019889.1,1,sp|AB019889.1|AB019889 Pinus massoniana chloroplast gene for tRNA-Val (UAC); partial sequence.,0,97,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019889.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2058,AB019890.1,1,sp|AB019890.1|AB019890 Pinus yunnanensis chloroplast gene for tRNA-Val (UAC); partial sequence.,0,98,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019890.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2059,AB019891.1,1,sp|AB019891.1|AB019891 Pinus nigra chloroplast gene for tRNA-Val (UAC); partial sequence.,0,99,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019891.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2060,AB019892.1,1,sp|AB019892.1|AB019892 Pinus pinaster chloroplast gene for tRNA-Val (UAC); partial sequence.,0,100,467,525,27.26,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT  #25  ****,,2,0,AB019892.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2061,AB019893.1,1,sp|AB019893.1|AB019893 Pinus halepensis chloroplast gene for tRNA-Val (UAC); partial sequence.,0,101,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019893.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2062,AB019894.1,1,sp|AB019894.1|AB019894 Pinus brutia chloroplast gene for tRNA-Val (UAC); partial sequence.,0,102,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019894.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2063,AB019895.1,1,sp|AB019895.1|AB019895 Pinus heldreichii chloroplast gene for tRNA-Val (UAC); partial sequence.,0,103,467,525,27.26,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #25)   ****,,2,0,AB019895.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2064,AB019896.1,1,sp|AB019896.1|AB019896 Pinus pinea chloroplast gene for tRNA-Val (UAC); partial sequence.,0,104,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019896.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2065,AB019897.1,1,sp|AB019897.1|AB019897 Pinus canariensis chloroplast gene for tRNA-Val (UAC); partial sequence.,0,105,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019897.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2066,AB019898.1,1,sp|AB019898.1|AB019898 Pinus roxburghii chloroplast gene for tRNA-Val (UAC); partial sequence.,0,106,467,525,31.72,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #12)   ****,,2,0,AB019898.1/467-525
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2067,AB019899.1,1,sp|AB019899.1|AB019899 Picea abies chloroplast gene for tRNA-Val (UAC); partial sequence.,0,107,469,527,27.26,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU,****    NEW  HIT (duplicate of new hit #25)   ****,,2,0,AB019899.1/469-527
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2068,AB019900.1,1,sp|AB019900.1|AB019900 Larix decidua chloroplast gene for tRNA-Val (UAC); partial sequence.,0,108,467,547,30.03,AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUCAUUUUGAUAAUAAGAACUUUGAUCUGUUCU,****    NEW  HIT  #33  ****,,2,0,AB019900.1/467-547
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2069,AB019901.1,1,sp|AB019901.1|AB019901 Abies numidica chloroplast gene for tRNA-Val (UAC); partial sequence.,0,109,467,544,27.35,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAUAAUAAGAAUUUUGAUCUGU,****    NEW  HIT  #34  ****,,2,0,AB019901.1/467-544
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2070,AB019902.1,1,sp|AB019902.1|AB019902 Keteleeria davidiana chloroplast gene for tRNA-Val (UAC); partial sequence.,0,110,467,544,32.08,AAGAGCCCAAUGCAAGAAAAUGCAUGUUGGGUUCUUGGAACAGCUCAAAUUAUUUUGAUAAUAAGAAUUUUGAUCUGU,****    NEW  HIT  #35  ****,,2,0,AB019902.1/467-544
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2071,AB019903.1,1,sp|AB019903.1|AB019903 Pseudolarix amabilis chloroplast gene for tRNA-Val (UAC); partial sequence.,0,111,466,546,25.57,AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUCAUUUUGAUAAUAAGAACUUUGAUCUGUUCU,****    NEW  HIT  #36  ****,,2,0,AB019903.1/466-546
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2072,AB019904.1,1,sp|AB019904.1|AB019904 Cathaya argyrophylla chloroplast gene for tRNA-Val (UAC); partial sequence.,0,112,473,553,26.44,AAGAGCCCAAUGCGAAAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUCAUUUUGAUAAUAAGAACUUUGAUCUGUUCU,****    NEW  HIT  #37  ****,,2,0,AB019904.1/473-553
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2189,AB020786.1,1,sp|AB020786.1|AB020786 Abies firma chloroplast DNA; trnS; psaM and trnG genes region.,0,113,2353,2426,45.80,AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUNUGAAUUAGAGGCAUUUAAUAAUCAAUGUCGACUAUAAC,AB020786.1/2353-2426,2353-2426,0,73,AB020786.1/2353-2426
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2191,AB020788.1,1,sp|AB020788.1|AB020788 Abies veitchii chloroplast DNA; trnS; psaM and trnG genes region.,0,114,2356,2429,48.77,AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUCUGAAUCAGAGGCAUUUAAUAAUCAAUGUCGACUAUAAC,AB020788.1/2356-2429,2356-2429,0,73,AB020788.1/2356-2429
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2193,AB020790.1,1,sp|AB020790.1|AB020790 Abies homolepis chloroplast DNA; trnS; psaM and trnG genes region.,0,115,2346,2419,49.47,AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUCUGAAUUAGAGGCAUUUAAUAAUCAAUGUCGACUAUAAC,AB020794.1/2299-2372 AB020790.1/2346-2419,2346-2419,0,73,AB020790.1/2346-2419
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2197,AB020794.1,1,sp|AB020794.1|AB020794 Abies sachalinensis chloroplast DNA; trnS; psaM and trnG genes region.,0,116,2299,2372,49.47,AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUCUGAAUUAGAGGCAUUUAAUAAUCAAUGUCGACUAUAAC,AB020794.1/2299-2372 AB020790.1/2346-2419,2299-2372,0,73,AB020794.1/2299-2372
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2199,AB020796.2,1,sp|AB020796.2|AB020796 Tsuga diversifolia chloroplast DNA; trnS; psaM and trnG genes region.,0,117,2222,2295,47.59,AGGAGCCGAAUGACAUGAAAUUCUCAUGUUCGGUUCUGAAUUAGAGGCAUUGAAUAAUCAAUGUCGACUAUAAC,AB020796.2/2222-2295,2222-2295,0,73,AB020796.2/2222-2295
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2206,AB020988.1,1,sp|AB020988.1|AB020988 Magnolia virginiana trnK gene; intron.,0,118,2417,2483,45.22,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC,AB021007.1/2418-2484 AB020992.1/2419-2485 AB020994.1/2419-2485 AB020999.1/2419-2485 AB055525.1/2418-2484 AB020990.1/2418-2484 AB020988.1/2417-2483 AB020991.1/2418-2484 AB020989.1/2417-2483 AB055520.1/2417-2483 AB055522.1/2417-2483 AB020997.1/2418-2484 AB020998.1/2418-2484 AB021005.1/2421-2487 AB055541.1/2419-2485 AB055543.1/2419-2485 AB021008.1/2416-2482 AB021009.1/2416-2482 AB020993.1/2417-2483 AB020995.1/2417-2483 AB020996.1/2417-2483 AB055542.1/2418-2484 AB021013.1/2421-2487 AB021010.1/2416-2482 AB055523.1/2420-2486 AB021011.1/2416-2482 AB055524.1/2420-2486 AB021012.1/2416-2482 AB021000.1/2419-2485 AB055533.1/2420-2486 AB021002.1/2419-2485 AB055534.1/2420-2486 AB021003.1/2419-2485 AB055535.1/2420-2486 AB021004.1/2419-2485 AB055536.1/2420-2486 AB055537.1/2420-2486 AB055540.1/2421-2487 AF218208.1/843-909 AB055526.1/2419-2485 AB055527.1/2419-2485 AB055550.1/2417-2483,2417-2483,0,66,AB020988.1/2417-2483
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2207,AB020989.1,1,sp|AB020989.1|AB020989 Magnolia virginiana trnK gene; intron.,0,119,2417,2483,45.22,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC,AB021007.1/2418-2484 AB020992.1/2419-2485 AB020994.1/2419-2485 AB020999.1/2419-2485 AB055525.1/2418-2484 AB020990.1/2418-2484 AB020988.1/2417-2483 AB020991.1/2418-2484 AB020989.1/2417-2483 AB055520.1/2417-2483 AB055522.1/2417-2483 AB020997.1/2418-2484 AB020998.1/2418-2484 AB021005.1/2421-2487 AB055541.1/2419-2485 AB055543.1/2419-2485 AB021008.1/2416-2482 AB021009.1/2416-2482 AB020993.1/2417-2483 AB020995.1/2417-2483 AB020996.1/2417-2483 AB055542.1/2418-2484 AB021013.1/2421-2487 AB021010.1/2416-2482 AB055523.1/2420-2486 AB021011.1/2416-2482 AB055524.1/2420-2486 AB021012.1/2416-2482 AB021000.1/2419-2485 AB055533.1/2420-2486 AB021002.1/2419-2485 AB055534.1/2420-2486 AB021003.1/2419-2485 AB055535.1/2420-2486 AB021004.1/2419-2485 AB055536.1/2420-2486 AB055537.1/2420-2486 AB055540.1/2421-2487 AF218208.1/843-909 AB055526.1/2419-2485 AB055527.1/2419-2485 AB055550.1/2417-2483,2417-2483,0,66,AB020989.1/2417-2483
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2208,AB020990.1,1,sp|AB020990.1|AB020990 Magnolia grandiflora trnK gene; intron.,0,120,2418,2484,45.22,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC,AB021007.1/2418-2484 AB020992.1/2419-2485 AB020994.1/2419-2485 AB020999.1/2419-2485 AB055525.1/2418-2484 AB020990.1/2418-2484 AB020988.1/2417-2483 AB020991.1/2418-2484 AB020989.1/2417-2483 AB055520.1/2417-2483 AB055522.1/2417-2483 AB020997.1/2418-2484 AB020998.1/2418-2484 AB021005.1/2421-2487 AB055541.1/2419-2485 AB055543.1/2419-2485 AB021008.1/2416-2482 AB021009.1/2416-2482 AB020993.1/2417-2483 AB020995.1/2417-2483 AB020996.1/2417-2483 AB055542.1/2418-2484 AB021013.1/2421-2487 AB021010.1/2416-2482 AB055523.1/2420-2486 AB021011.1/2416-2482 AB055524.1/2420-2486 AB021012.1/2416-2482 AB021000.1/2419-2485 AB055533.1/2420-2486 AB021002.1/2419-2485 AB055534.1/2420-2486 AB021003.1/2419-2485 AB055535.1/2420-2486 AB021004.1/2419-2485 AB055536.1/2420-2486 AB055537.1/2420-2486 AB055540.1/2421-2487 AF218208.1/843-909 AB055526.1/2419-2485 AB055527.1/2419-2485 AB055550.1/2417-2483,2418-2484,0,66,AB020990.1/2418-2484
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2209,AB020991.1,1,sp|AB020991.1|AB020991 Magnolia guatemalensis trnK gene; intron.,0,121,2418,2484,45.22,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC,AB021007.1/2418-2484 AB020992.1/2419-2485 AB020994.1/2419-2485 AB020999.1/2419-2485 AB055525.1/2418-2484 AB020990.1/2418-2484 AB020988.1/2417-2483 AB020991.1/2418-2484 AB020989.1/2417-2483 AB055520.1/2417-2483 AB055522.1/2417-2483 AB020997.1/2418-2484 AB020998.1/2418-2484 AB021005.1/2421-2487 AB055541.1/2419-2485 AB055543.1/2419-2485 AB021008.1/2416-2482 AB021009.1/2416-2482 AB020993.1/2417-2483 AB020995.1/2417-2483 AB020996.1/2417-2483 AB055542.1/2418-2484 AB021013.1/2421-2487 AB021010.1/2416-2482 AB055523.1/2420-2486 AB021011.1/2416-2482 AB055524.1/2420-2486 AB021012.1/2416-2482 AB021000.1/2419-2485 AB055533.1/2420-2486 AB021002.1/2419-2485 AB055534.1/2420-2486 AB021003.1/2419-2485 AB055535.1/2420-2486 AB021004.1/2419-2485 AB055536.1/2420-2486 AB055537.1/2420-2486 AB055540.1/2421-2487 AF218208.1/843-909 AB055526.1/2419-2485 AB055527.1/2419-2485 AB055550.1/2417-2483,2418-2484,0,66,AB020991.1/2418-2484
./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;24;42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub;20;30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;23;24;41;42 ,Rfam/cm/RF00029.cm (global),/projects/bio/zasha/seqs/embl/org.dat.fasta.gz,2210,AB020992.1,1,sp|AB020992.1|AB020992 Magnolia schiedeana trnK gene; intron.,0,122,2419,2485,45.22,GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC,AB021007.1/2418-2484 AB020992.1/2419-2485 AB020994.1/2419-2485 AB020999.1/2419-2485 AB055525.1/2418-2484 AB020990.1/2418-2484 AB020988.1/2417-2483 AB020991.1/2418-2484 AB020989.1/2417-2483 AB055520.1/2417-2483 AB055522.1/2417-2483 AB020997.1/2418-2484 AB020998.1/2418-2484 AB021005.1/2421-2487 AB055541.1/2419-2485 AB055543.1/2419-2485 AB021008.1/2416-2482 AB021009.1/2416-2482 AB020993.1/2417-2483 AB020995.1/2417-24