Params: ./cmzasha --no-stderr --filter 200 22.8 Rfam/cm/RF00029.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left,24,42 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub,20,30 2struct-str data/TryAllCm/RF00029_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left,23,24,41,42 Build: release Host: recycle.cs.washington.edu pid: 31665 ----hmm-from-cmFileName: Rfam/cm/RF00029.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00029.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00029.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----hmm-from-cmFileName: Rfam/cm/RF00029.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00029.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00029.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-left,24/remember-left,42 ----hmm-from-cmFileName: Rfam/cm/RF00029.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00029.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00029.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,20,30 ----hmm-from-cmFileName: Rfam/cm/RF00029.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00029.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00029.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-left,23/remember-left,24/remember-left,41/remember-left,42 ----cmFile: Rfam/cm/RF00029.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv03.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mam.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/mus.dat.fasta.gz ----sequence: #26324,sp|AL808018.7|AL808018 Mouse DNA sequence from clone RP23-473C10 on chromosome X ----isReversed: 0 ----hitSequence: AAGAGAUAUAUGCAUAGAAAAAUGCAAAUGUACUAUUGUAUCAUGGAAAGAGGAGGAAGUCUAUUUAUCAUAU hit 0 : 6452 6524 (fwd) 22.81 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---...<<<<-<<___________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGA...gGgGgGguuagaaauuag 57 A: G::: AUG::+ GAAA +::CA U :::U :UG+ ::G:+:: + ++ 6452 AAGAGAUAUAUGCAUAGAAAAAUGCAAAUGUACUAUUGUaucAUGGAAA------GAGGA 6505 _________>>-->>>>::: 58 aauuaacuAcCUACcCcAAu 77 + + CUA::UA:C:: AU 6506 GGAAGUCUAUUUAUCAU-AU 6524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #31,sp|AJ404953.1|AAC404953 Aiphanes aculeata chloroplast partial rps16 gene for ribosomal protein S16, exon 2 ----isReversed: 0 ----hitSequence: UCGAGCCGUAUGAGGAGAAAACCUCCCAUACGUUUCUAGGGGGGGCAUUGUUUAUUUACAUCUAUUCCAAU hit 1 : 770 840 (fwd) 37.15 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 + GAG CGUAUGAG: GAAA :CUC C UACG UUCU GG::GG AUU+ 770 UCGAGCCGUAUGAGGAGAAAACCUCCCAUACGUUUCUAGGGGGGGC------AUUGUUUA 823 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U A CUA::CCAAU 824 UUUACAUCUAUUCCAAU 840 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #86,sp|AJ487784.1|AAD487784 Achimenes admirabilis chloroplast partial rpl16 gene, intron 1 ----isReversed: 0 ----hitSequence: AGGAGCUGGAUGAGAAGAAACUCUCACGUCCAGUUCUGUAGUAGAGAUGGAAUUCCGAAAAAACCAUCAACUAUAAC hit 2 : 812 888 (fwd) 55.46 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---.<<<<-<<_____________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGA.gGgGgGguuagaaauuagaa 59 GAGC:G:AUGAG::GAAA::CUCACGU:C:GUUCUG+ :::G+G: U+GAA U GAA 812 AGGAGCUGGAUGAGAAGAAACUCUCACGUCCAGUUCUGUaGUAGAGA-UGGAAUUCCGAA 870 _______>>-->>>>::: 60 uuaacuAcCUACcCcAAu 77 AAC A:C AC:::AA+ 871 AAAACCAUCAACUAUAAC 888 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #92,sp|AJ247145.1|AAF247145 Aniba affinis chloroplast partial matK gene for maturase, specimen voucher Ziburski 547 (HBG) ----isReversed: 0 ----hitSequence: UAAAGCCCUGUGCAAUGAAAAAUGCAAGCACGGCUUUUUUGGGGGGUCUUUUUACUCUAUAUCUAUUAUAU hit 3 : 1244 1314 (fwd) 35.51 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 +A:A CC U:UG:: :GAAA: ::CA G:A GG U:U :::GG: +++UU A 1244 UAAAGCCCUGUGCAAUGAAAAAUGCAAGCACGGCUUUU-UUGGGGG----GUCUUUUUAC 1298 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U UA:CUA::: AU 1299 UCUAUAUCUAUUAU-AU 1314 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #101,sp|AJ409091.1|AAG409091 Anthoceros agrestis mitochondrial partial nad4 gene for NADH dehydrogenase subunit 4, including intron nad4i3 ----isReversed: 0 ----hitSequence: AAGAGCCGUAUGAUAGGUAACUAUCUCAUAUGGUUCGGAGAGGACUCCAGUACUCUGAUUAGUGAUUAGGGAAUGGUUUCAUUCUAU hit 4 : 105 191 (fwd) 42.30 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<............__ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg............uu 48 AGAGCC UAUGA::GG AAC::UC C UA GGUUC+G :G::G: U 105 AAGAGCCGUAUGAUAGGUAACUAUCUCAUAUGGUUCGG-AGAGGACuccaguacucugAU 163 __________________>>-->>>>::: 49 agaaauuagaauuaacuAcCUACcCcAAu 77 ++++ +U ++ A : A::C: AU 164 UAGUGAUUAGGGAAUGGUUUCAUUCU-AU 191 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #102,sp|AJ409117.1|AAG409117 Anthoceros agrestis mitochondrial partial nad2 gene for NADH dehydrogenase subunit 2, exons 1-3 ----isReversed: 0 ----hitSequence: GAGAGCUGUAUAAUGGGCGACUAUCUAGUACGGUUCGGAGAGCACAAUGGUAGGUCAUUCUGAAAUUCUCUCAACUCUUCGCUUAGCGAACAGCGAGUGAACGCCAGCCUUGCUGCACGGCGGCUCGGUGAACAAAUUUUGACUCUAU hit 5 : 1906 2053 (fwd) 38.66 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GAGAGC:GUAU:A:GGG ACU:U: GUAC:GUUC+G :G:G : 1906 GAGAGCUGUAUAAUGGGCGACUAUCUAGUACGGUUCGG-AGAGCACaaugguaggucauu 1964 ..........................................................._ 47 ...........................................................u 47 1965 cugaaauucucucaacucuucgcuuagcgaacagcgagugaacgccagccuugcugcacG 2024 ___________________>>-->>>>::: 48 uagaaauuagaauuaacuAcCUACcCcAAu 77 + G+ + +A +AA U : AC:C: AU 2025 GCGGCUCGGUGAACAAAUUUUGACUCU-AU 2053 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #167,sp|AJ224545.1|AAL224545 Allium altaicum chloroplast psaA-trnS intergenic spacer, partial sequence (cultivar TAX1422) ----isReversed: 1 ----hitSequence: AGGAGCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGGAGCGGAGAUUUUUUGAAUAAAAUAAAUGAACGACCGUAAC hit 6 : 883 805 (rev) 61.16 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---.<<<<-<<.____________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGA.gGgGgGg.uuagaaauuaga 58 GAGCCGUAUGAG::GAAA::CUCACGUACGGUUCUG ::GG+G: UU+ + A+UA+A 1244 AGGAGCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGGaGCGGAGAuUUUUUGAAUAAA 1303 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 AU AA+ A:C ACC::AA+ 1304 AUAAAUGAACGACCGUAAC 1322 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #168,sp|AJ224546.1|AAL224546 Allium altaicum chloroplast psaA-trnS intergenic spacer, partial sequence (cultivar TAX2760) ----isReversed: 1 ----hitSequence: AGGACCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGGAGCGGAGAUUUUUUGAAUAAAAUAAAUGAACGACCGUAAC hit 7 : 880 802 (rev) 54.37 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---.<<<<-<<.____________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGA.gGgGgGg.uuagaaauuaga 58 GA:CCGUAUGAG::GAAA::CUCACGUACGG:UCUG ::GG+G: UU+ + A+UA+A 1244 AGGACCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGGaGCGGAGAuUUUUUGAAUAAA 1303 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 AU AA+ A:C ACC::AA+ 1304 AUAAAUGAACGACCGUAAC 1322 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #237,sp|AJ240903.1|AAL240903 Attalea allenii partial rps16 gene ----isReversed: 0 ----hitSequence: UCGAGCCGUAUGAGGAGAAAACCUCCCAUACGUUUCUAGGGGGGGCAUUGUUUAUUUACAUCUAUUCCAAU hit 8 : 780 850 (fwd) 37.15 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 + GAG CGUAUGAG: GAAA :CUC C UACG UUCU GG::GG AUU+ 780 UCGAGCCGUAUGAGGAGAAAACCUCCCAUACGUUUCUAGGGGGGGC------AUUGUUUA 833 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U A CUA::CCAAU 834 UUUACAUCUAUUCCAAU 850 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #302,sp|AJ299549.1|AAN299549 Aulacomnium androgynum mitochondrial partial nad2 gene for NADH dehydrogenase subunit 2, exons 1-2 ----isReversed: 0 ----hitSequence: ACGAGCCGCAUGCGGGGAAACUCGCACGUGUGGUUCUGACCGGGGGGGGGAAGAAAAGCACCCUAUCGGUAU hit 9 : 966 1037 (fwd) 43.45 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GAGCC :AUG:GGGGAAACUC:CACGU: GGUUCUGA :G:GGG A++A 966 ACGAGCCGCAUGCGGGGAAACUCGCACGUGUGGUUCUGACCGGGGG-----GGGGAAGAA 1020 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 A+C CCUA:C: AU 1021 AAGCACCCUAUCGGUAU 1037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #314,sp|AJ240902.1|AAR240902 Allagoptera arenaria partial rps16 gene ----isReversed: 0 ----hitSequence: UCGAGCCGUAUGAGGAGAAAACCUCCCAUACGUUUCUAGGGGGGGCAUUGUUUAUUUACAUCUAUUCCAAU hit 10 : 775 845 (fwd) 37.15 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 + GAG CGUAUGAG: GAAA :CUC C UACG UUCU GG::GG AUU+ 775 UCGAGCCGUAUGAGGAGAAAACCUCCCAUACGUUUCUAGGGGGGGC------AUUGUUUA 828 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U A CUA::CCAAU 829 UUUACAUCUAUUCCAAU 845 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #324,sp|AJ536481.1|AAR536481 Actinidia arguta car. purpurea partial mitochondrial nad4 gene for NADH dehydrogenase subunit 4, exons 1-2 ----isReversed: 0 ----hitSequence: CGGAGCCGUAUGAUGCGGAAGUCUCACGUACGGUUCCCUGAGAAGGGAGUGGCUACCUACUGGAGCUUCGACCAACCACCACCGGUCAAUUCCGCUUUGGGGCCACCCCUUACUCUAC hit 11 : 1433 1550 (fwd) 41.90 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GAGCCGUAUGA G:G AA:U UCACGUACGGUUC G:G+:G 1433 CGGAGCCGUAUGAUGCGGAAGUCUCACGUACGGUUCCC-UGAGAAGggaguggcuaccua 1491 .............................____________________>>-->>>>::: 47 .............................uuagaaauuagaauuaacuAcCUACcCcAAu 77 U+ +UU G+ + AC C:UAC:C A+ 1492 cuggagcuucgaccaaccaccaccggucaAUUCCGCUUUGGGGCCACCCCUUACUCU-AC 1550 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #868,sp|AB008758.1|AB008758 Atractylodes chinensis chloroplast gene for maturase K, tRNA-Lys, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU hit 12 : 2511 2591 (fwd) 57.33 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<......________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg......uuagaaau 54 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G GG:GGG: U++++ + 2511 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGAuuuuuaCUUAUUUA 2569 ____________>>-->>>>::: 55 uagaauuaacuAcCUACcCcAAu 77 + +A AA+UA:CUAC:CC AU 2570 ACAAGGAAAUUAUCUACUCC-AU 2591 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #869,sp|AB008759.1|AB008759 Atractylodes japonica chloroplast gene for maturase K, tRNA-Lys. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU hit 13 : 2514 2594 (fwd) 57.33 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<......________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg......uuagaaau 54 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G GG:GGG: U++++ + 2514 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGAuuuuuaCUUAUUUA 2572 ____________>>-->>>>::: 55 uagaauuaacuAcCUACcCcAAu 77 + +A AA+UA:CUAC:CC AU 2573 ACAAGGAAAUUAUCUACUCC-AU 2594 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #870,sp|AB008760.1|AB008760 Atractylodes koreana chloroplast gene for maturase K, tRNA-Lys. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU hit 14 : 2518 2598 (fwd) 57.33 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<......________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg......uuagaaau 54 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G GG:GGG: U++++ + 2518 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGAuuuuuaCUUAUUUA 2576 ____________>>-->>>>::: 55 uagaauuaacuAcCUACcCcAAu 77 + +A AA+UA:CUAC:CC AU 2577 ACAAGGAAAUUAUCUACUCC-AU 2598 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #871,sp|AB008761.1|AB008761 Atractylodes lancea chloroplast gene for maturase K, tRNA-Lys. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU hit 15 : 2515 2595 (fwd) 57.33 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<......________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg......uuagaaau 54 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G GG:GGG: U++++ + 2515 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGAuuuuuaCUUAUUUA 2573 ____________>>-->>>>::: 55 uagaauuaacuAcCUACcCcAAu 77 + +A AA+UA:CUAC:CC AU 2574 ACAAGGAAAUUAUCUACUCC-AU 2595 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #872,sp|AB008762.1|AB008762 Atractylodes ovata chloroplast gene for maturase K, tRNA-Lys. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGAUUUUUACUUAUUUAACAAGGAAAUUAUCUACUCCAU hit 16 : 2512 2592 (fwd) 57.33 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<......________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg......uuagaaau 54 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G GG:GGG: U++++ + 2512 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGAuuuuuaCUUAUUUA 2570 ____________>>-->>>>::: 55 uagaauuaacuAcCUACcCcAAu 77 + +A AA+UA:CUAC:CC AU 2571 ACAAGGAAAUUAUCUACUCC-AU 2592 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1156,sp|AB012729.1|AB012729 Rhododendron ovatum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 17 : 2126 2185 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2126 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2170 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2171 --UUUUGCUUGUUUAAC 2185 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1157,sp|AB012730.1|AB012730 Rhododendron stamineum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 18 : 2088 2147 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2088 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2132 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2133 --UUUUGCUUGUUUAAC 2147 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1158,sp|AB012731.1|AB012731 Rhododendron albiflorum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 19 : 2124 2183 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2124 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2168 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2169 --UUUUGCUUGUUUAAC 2183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1159,sp|AB012732.1|AB012732 Rhododendron ponticum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 20 : 2122 2181 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2122 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2166 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2167 --UUUUGCUUGUUUAAC 2181 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1160,sp|AB012733.1|AB012733 Rhododendron semibarbatum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 21 : 2123 2182 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2123 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2167 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2168 --UUUUGCUUGUUUAAC 2182 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1161,sp|AB012734.1|AB012734 Rhododendron luteum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 22 : 2122 2181 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2122 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2166 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2167 --UUUUGCUUGUUUAAC 2181 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1162,sp|AB012735.1|AB012735 Rhododendron canadense chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 23 : 2113 2172 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2113 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2157 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2158 --UUUUGCUUGUUUAAC 2172 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1164,sp|AB012737.1|AB012737 Rhododendron albrechtii chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 24 : 2119 2178 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2119 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2163 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2164 --UUUUGCUUGUUUAAC 2178 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1165,sp|AB012738.1|AB012738 Rhododendron pentaphyllum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 25 : 2127 2186 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2127 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2171 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2172 --UUUUGCUUGUUUAAC 2186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1166,sp|AB012739.1|AB012739 Rhododendron nipponicum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 26 : 2110 2169 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2110 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2154 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2155 --UUUUGCUUGUUUAAC 2169 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1167,sp|AB012740.1|AB012740 Rhododendron primuliflorum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 27 : 2057 2116 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2057 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2101 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2102 --UUUUGCUUGUUUAAC 2116 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1168,sp|AB012741.1|AB012741 Rhododendron ferrugineum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 28 : 2100 2159 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2100 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2144 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2145 --UUUUGCUUGUUUAAC 2159 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1169,sp|AB012742.1|AB012742 Rhododendron javanicum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 29 : 2102 2161 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2102 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2146 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2147 --UUUUGCUUGUUUAAC 2161 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1170,sp|AB012743.1|AB012743 Rhododendron santapaui chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 30 : 2137 2196 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2137 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2181 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2182 --UUUUGCUUGUUUAAC 2196 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1171,sp|AB012744.1|AB012744 Rhododendron camtschaticum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 31 : 2011 2070 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2011 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2055 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2056 --UUUUGCUUGUUUAAC 2070 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1173,sp|AB012746.1|AB012746 Rhododendron wadanum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 32 : 2124 2183 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2124 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2168 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2169 --UUUUGCUUGUUUAAC 2183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1174,sp|AB012747.1|AB012747 Rhododendron indicum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 33 : 2121 2180 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2121 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2165 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2166 --UUUUGCUUGUUUAAC 2180 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1176,sp|AB012749.1|AB012749 Rhododendron tashiroi chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 34 : 2122 2181 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2122 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2166 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2167 --UUUUGCUUGUUUAAC 2181 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1177,sp|AB012750.1|AB012750 Rhododendron tsusiophyllum chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 35 : 2122 2181 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2122 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2166 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2167 --UUUUGCUUGUUUAAC 2181 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1179,sp|AB012752.1|AB012752 Menziesia multiflora chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 36 : 2118 2177 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2118 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2162 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2163 --UUUUGCUUGUUUAAC 2177 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1180,sp|AB012753.1|AB012753 Elliottia paniculata chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 37 : 2095 2154 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2095 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2139 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2140 --UUUUGCUUGUUUAAC 2154 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1181,sp|AB012754.1|AB012754 Cassiope lycopodioides chloroplast matK gene for ribosomal maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGGGGAGGGUUUUUGCUUGUUUAAC hit 38 : 2132 2191 (fwd) 29.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:A CCGU:UG:: :GAAA: ::CA G:ACGG U:+G ::: GG 2132 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGCUUGG-GGAGGGU-------------- 2176 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U CU :::AA+ 2177 --UUUUGCUUGUUUAAC 2191 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #1999,sp|AB019831.1|AB019831 Pinus krempfii chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 39 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2000,sp|AB019832.1|AB019832 Pinus cembra chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 40 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2001,sp|AB019833.1|AB019833 Pinus pumila chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 41 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2002,sp|AB019834.1|AB019834 Pinus koraiensis chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 42 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2003,sp|AB019835.1|AB019835 Pinus strobus chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 43 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2004,sp|AB019836.1|AB019836 Pinus monticola chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 44 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2005,sp|AB019837.1|AB019837 Pinus parviflora chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 45 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2006,sp|AB019838.1|AB019838 Pinus wallichiana chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 46 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2007,sp|AB019839.1|AB019839 Pinus kwangtungensis chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 47 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2008,sp|AB019840.1|AB019840 Pinus peuce chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 48 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2009,sp|AB019841.1|AB019841 Pinus armandii chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 49 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2010,sp|AB019842.1|AB019842 Pinus aristata chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 50 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2011,sp|AB019843.1|AB019843 Pinus balfouriana chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 51 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2012,sp|AB019844.1|AB019844 Pinus gerardiana chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 52 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2013,sp|AB019845.1|AB019845 Pinus bungeana chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 53 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2014,sp|AB019846.1|AB019846 Pinus sylvestris chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU hit 54 : 949 1037 (fwd) 60.39 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 949 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1007 ____________________>>-->>>>::: 47 uuagaaauuagaauuaacuAcCUACcCcAAu 77 U+A A +AGA +A+ A:C AC:CC AU 1008 UGAUACUGAAGAGCAGAUCAUCCACUCC-AU 1037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2015,sp|AB019847.1|AB019847 Pinus tabuliformis chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU hit 55 : 949 1037 (fwd) 60.39 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 949 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1007 ____________________>>-->>>>::: 47 uuagaaauuagaauuaacuAcCUACcCcAAu 77 U+A A +AGA +A+ A:C AC:CC AU 1008 UGAUACUGAAGAGCAGAUCAUCCACUCC-AU 1037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2016,sp|AB019848.1|AB019848 Pinus merkusii chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 56 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2017,sp|AB019849.1|AB019849 Pinus hwangshanensis chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU hit 57 : 949 1037 (fwd) 60.39 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 949 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1007 ____________________>>-->>>>::: 47 uuagaaauuagaauuaacuAcCUACcCcAAu 77 U+A A +AGA +A+ A:C AC:CC AU 1008 UGAUACUGAAGAGCAGAUCAUCCACUCC-AU 1037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2018,sp|AB019850.1|AB019850 Pinus kesiya chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU hit 58 : 949 1037 (fwd) 60.39 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 949 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1007 ____________________>>-->>>>::: 47 uuagaaauuagaauuaacuAcCUACcCcAAu 77 U+A A +AGA +A+ A:C AC:CC AU 1008 UGAUACUGAAGAGCAGAUCAUCCACUCC-AU 1037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2019,sp|AB019851.1|AB019851 Pinus densiflora chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU hit 59 : 949 1037 (fwd) 60.39 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 949 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1007 ____________________>>-->>>>::: 47 uuagaaauuagaauuaacuAcCUACcCcAAu 77 U+A A +AGA +A+ A:C AC:CC AU 1008 UGAUACUGAAGAGCAGAUCAUCCACUCC-AU 1037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2020,sp|AB019852.1|AB019852 Pinus massoniana chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU hit 60 : 949 1037 (fwd) 60.39 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 949 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1007 ____________________>>-->>>>::: 47 uuagaaauuagaauuaacuAcCUACcCcAAu 77 U+A A +AGA +A+ A:C AC:CC AU 1008 UGAUACUGAAGAGCAGAUCAUCCACUCC-AU 1037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2021,sp|AB019853.1|AB019853 Pinus yunnanensis chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU hit 61 : 949 1037 (fwd) 60.39 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 949 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1007 ____________________>>-->>>>::: 47 uuagaaauuagaauuaacuAcCUACcCcAAu 77 U+A A +AGA +A+ A:C AC:CC AU 1008 UGAUACUGAAGAGCAGAUCAUCCACUCC-AU 1037 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2022,sp|AB019854.1|AB019854 Pinus nigra chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGAGCAGAUCAUCCACUCCAU hit 62 : 943 1031 (fwd) 60.39 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 943 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1001 ____________________>>-->>>>::: 47 uuagaaauuagaauuaacuAcCUACcCcAAu 77 U+A A +AGA +A+ A:C AC:CC AU 1002 UGAUACUGAAGAGCAGAUCAUCCACUCC-AU 1031 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2023,sp|AB019855.1|AB019855 Pinus pinaster chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 63 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2024,sp|AB019856.1|AB019856 Pinus halepensis chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 64 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2025,sp|AB019857.1|AB019857 Pinus brutia chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 65 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2026,sp|AB019858.1|AB019858 Pinus heldreichii chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 66 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2027,sp|AB019859.1|AB019859 Pinus pinea chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 67 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2028,sp|AB019860.1|AB019860 Pinus canariensis chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 68 : 961 1050 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 961 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1019 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1020 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1050 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2029,sp|AB019861.1|AB019861 Pinus roxburghii chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUUUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 69 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuuuucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2030,sp|AB019862.1|AB019862 Picea abies chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUAAUCCACUCCAU hit 70 : 955 1044 (fwd) 57.72 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUAAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2031,sp|AB019863.1|AB019863 Larix decidua chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 71 : 955 1044 (fwd) 57.96 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2032,sp|AB019864.1|AB019864 Abies numidica chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCCUUACUGAUACUGAAGGAGCAGAUAAUCCACUCCAU hit 72 : 968 1058 (fwd) 57.65 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 968 GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcuccuua 1026 ..____________________>>-->>>>::: 47 ..uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1027 cuGAUACUGAAGGAGCAGAUAAUCCACUCC-AU 1058 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2033,sp|AB019865.1|AB019865 Keteleeria davidiana chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 73 : 967 1056 (fwd) 57.96 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 967 GAAAGCCGUGUGCGAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1025 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1026 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1056 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2034,sp|AB019866.1|AB019866 Pseudolarix amabilis chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 74 : 955 1044 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 955 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1013 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1014 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1044 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2035,sp|AB019867.1|AB019867 Cathaya argyrophylla chloroplast gene for maturase, partial cds. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGGGGAGAGAUUUCUCGCUCUUACUGAUACUGAAGGAGCAGAUCAUCCACUCCAU hit 75 : 960 1049 (fwd) 58.23 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<.............. 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGg.............. 46 GA:AGCCGU:UG::::GA A::::CA G:ACGGUU:+G GG:G+G: 960 GAAAGCCGUGUGCAAUGAGAAUUGCAAGCACGGUUUGG-GGAGAGAuuucucgcucuuac 1018 .____________________>>-->>>>::: 47 .uuagaaauuagaauuaacuAcCUACcCcAAu 77 ++ + +++GA +A+ A:C AC:CC AU 1019 uGAUACUGAAGGAGCAGAUCAUCCACUCC-AU 1049 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2036,sp|AB019868.1|AB019868 Pinus krempfii chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 76 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2037,sp|AB019869.1|AB019869 Pinus cembra chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 77 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2038,sp|AB019870.1|AB019870 Pinus pumila chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 78 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2039,sp|AB019871.1|AB019871 Pinus koraiensis chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 79 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2040,sp|AB019872.1|AB019872 Pinus strobus chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 80 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2041,sp|AB019873.1|AB019873 Pinus monticola chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 81 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2042,sp|AB019874.1|AB019874 Pinus parviflora chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 82 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2043,sp|AB019875.1|AB019875 Pinus wallichiana chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 83 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2044,sp|AB019876.1|AB019876 Pinus kwangtungensis chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 84 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2045,sp|AB019877.1|AB019877 Pinus peuce chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 85 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2046,sp|AB019878.1|AB019878 Pinus armandii chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 86 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2047,sp|AB019879.1|AB019879 Pinus aristata chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 87 : 466 524 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 466 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 509 ---UUCAAAUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2048,sp|AB019880.1|AB019880 Pinus balfouriana chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 88 : 466 524 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 466 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 509 ---UUCAAAUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2049,sp|AB019881.1|AB019881 Pinus gerardiana chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 89 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2050,sp|AB019882.1|AB019882 Pinus bungeana chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAUUUAUUUUGAU hit 90 : 466 524 (fwd) 31.30 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: :: 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 508 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A::UA:::: AU 509 ---UUCAAUUUAUUUUGAU 524 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2051,sp|AB019883.1|AB019883 Pinus sylvestris chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 91 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2052,sp|AB019884.1|AB019884 Pinus tabuliformis chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 92 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2053,sp|AB019885.1|AB019885 Pinus merkusii chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 93 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2054,sp|AB019886.1|AB019886 Pinus hwangshanensis chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 94 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2055,sp|AB019887.1|AB019887 Pinus kesiya chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 95 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2056,sp|AB019888.1|AB019888 Pinus densiflora chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 96 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2057,sp|AB019889.1|AB019889 Pinus massoniana chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 97 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2058,sp|AB019890.1|AB019890 Pinus yunnanensis chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 98 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2059,sp|AB019891.1|AB019891 Pinus nigra chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 99 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2060,sp|AB019892.1|AB019892 Pinus pinaster chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 100 : 467 525 (fwd) 27.26 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2061,sp|AB019893.1|AB019893 Pinus halepensis chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 101 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2062,sp|AB019894.1|AB019894 Pinus brutia chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 102 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2063,sp|AB019895.1|AB019895 Pinus heldreichii chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 103 : 467 525 (fwd) 27.26 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2064,sp|AB019896.1|AB019896 Pinus pinea chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 104 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2065,sp|AB019897.1|AB019897 Pinus canariensis chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 105 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2066,sp|AB019898.1|AB019898 Pinus roxburghii chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 106 : 467 525 (fwd) 31.72 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :::: : 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 509 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 510 ---UUCAAAUUAUUUUGAU 525 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2067,sp|AB019899.1|AB019899 Picea abies chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAU hit 107 : 469 527 (fwd) 27.26 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<____________ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGguuagaaauuaga 58 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :::: : 469 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAG------------ 511 ________>>-->>>>::: 59 auuaacuAcCUACcCcAAu 77 C A :UA:::: AU 512 ---UUCAAAUUAUUUUGAU 527 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2068,sp|AB019900.1|AB019900 Larix decidua chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAGAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUCAUUUUGAUAAUAAGAACUUUGAUCUGUUCU hit 108 : 467 547 (fwd) 30.03 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<.........___ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGg.........uua 49 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU G:::+G: UU+ 467 AAGAGCCCAAUGCG--aGAAAa--UGCAUGUUGGGUUCUUGGAACAGUucaaaucauUUU 522 _________________>>-->>>>::: 50 gaaauuagaauuaacuAcCUACcCcAAu 77 GA+A+UA++A + + A:CU :::C U 523 GAUAAUAAGAACUUUGAUCU-GUUC--U 547 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2069,sp|AB019901.1|AB019901 Abies numidica chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUUAUUUUGAUAAUAAGAAUUUUGAUCUGU hit 109 : 467 544 (fwd) 27.35 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<......______ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGg......uuagaa 52 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU :G: :: UUA ++ 467 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUU-GGAACAGuucaaaUUAUUU 521 ______________>>-->>>>::: 53 auuagaauuaacuAcCUACcCcAAu 77 + +A +A U :: A :C: U 522 UGAUAAUAAGAAUUUUGA-UCU-GU 544 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2070,sp|AB019902.1|AB019902 Keteleeria davidiana chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCAAGAAAAUGCAUGUUGGGUUCUUGGAACAGCUCAAAUUAUUUUGAUAAUAAGAAUUUUGAUCUGU hit 110 : 467 544 (fwd) 32.08 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<......______ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGg......uuagaa 52 AGAGCC+:AUG:: GAAA ::CA+GU:+GGUUCU :G: :: UUA ++ 467 AAGAGCCCAAUGCA--aGAAAa--UGCAUGUUGGGUUCUU-GGAACAGcucaaaUUAUUU 521 ______________>>-->>>>::: 53 auuagaauuaacuAcCUACcCcAAu 77 + +A +A U :: A :C: U 522 UGAUAAUAAGAAUUUUGA-UCU-GU 544 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2071,sp|AB019903.1|AB019903 Pseudolarix amabilis chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAUAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUCAUUUUGAUAAUAAGAACUUUGAUCUGUUCU hit 111 : 466 546 (fwd) 25.57 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<.........___ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGg.........uua 49 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU G:::+G: UU+ 466 AAGAGCCCAAUGCG--aUAAAa--UGCAUGUUGGGUUCUUGGAACAGUucaaaucauUUU 521 _________________>>-->>>>::: 50 gaaauuagaauuaacuAcCUACcCcAAu 77 GA+A+UA++A + + A:CU :::C U 522 GAUAAUAAGAACUUUGAUCU-GUUC--U 546 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2072,sp|AB019904.1|AB019904 Cathaya argyrophylla chloroplast gene for tRNA-Val (UAC), partial sequence. ----isReversed: 0 ----hitSequence: AAGAGCCCAAUGCGAAAAAAUGCAUGUUGGGUUCUUGGAACAGUUCAAAUCAUUUUGAUAAUAAGAACUUUGAUCUGUUCU hit 112 : 473 553 (fwd) 26.44 bits ::<<<<<<<<-<<<<<.____.>>>>>--->>>>>>>>---<<<<-<<.........___ 1 gaGAGCCGUAUGaggg.GAAA.cucuCAcGUACGGUUCuGAgGgGgGg.........uua 49 AGAGCC+:AUG:: AAA ::CA+GU:+GGUUCU G:::+G: UU+ 473 AAGAGCCCAAUGCG--aAAAAa--UGCAUGUUGGGUUCUUGGAACAGUucaaaucauUUU 528 _________________>>-->>>>::: 50 gaaauuagaauuaacuAcCUACcCcAAu 77 GA+A+UA++A + + A:CU :::C U 529 GAUAAUAAGAACUUUGAUCU-GUUC--U 553 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2189,sp|AB020786.1|AB020786 Abies firma chloroplast DNA, trnS, psaM and trnG genes region. ----isReversed: 0 ----hitSequence: AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUNUGAAUUAGAGGCAUUUAAUAAUCAAUGUCGACUAUAAC hit 113 : 2353 2426 (fwd) 45.80 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---.<<<<-<<_____________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGA.gGgGgGguuagaaauuagaa 59 AGCCG:AUGA : GAAA : UCA+GU:CGGUU UGA ::G+G: A UUA+ A 2353 AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUNUGAaUUAGAGG----CAUUUAAUA 2408 _______>>-->>>>::: 60 uuaacuAcCUACcCcAAu 77 U A U :C AC:: AA+ 2409 AUCAAUGUCGACUAUAAC 2426 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2191,sp|AB020788.1|AB020788 Abies veitchii chloroplast DNA, trnS, psaM and trnG genes region. ----isReversed: 0 ----hitSequence: AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUCUGAAUCAGAGGCAUUUAAUAAUCAAUGUCGACUAUAAC hit 114 : 2356 2429 (fwd) 48.77 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<.<<-<<_____________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgG.gGgGguuagaaauuagaa 59 GAGCCG:AUGA : GAAA : UCA+GU:CGGUUCUGA:: :G+G: A UUA+ A 2356 AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUCUGAAUcAGAGG----CAUUUAAUA 2411 _______>>-->>>>::: 60 uuaacuAcCUACcCcAAu 77 U A U :C AC:::AA+ 2412 AUCAAUGUCGACUAUAAC 2429 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2193,sp|AB020790.1|AB020790 Abies homolepis chloroplast DNA, trnS, psaM and trnG genes region. ----isReversed: 0 ----hitSequence: AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUCUGAAUUAGAGGCAUUUAAUAAUCAAUGUCGACUAUAAC hit 115 : 2346 2419 (fwd) 49.47 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---.<<<<-<<_____________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGA.gGgGgGguuagaaauuagaa 59 GAGCCG:AUGA : GAAA : UCA+GU:CGGUUCUGA ::G+G: A UUA+ A 2346 AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUCUGAaUUAGAGG----CAUUUAAUA 2401 _______>>-->>>>::: 60 uuaacuAcCUACcCcAAu 77 U A U :C AC:: AA+ 2402 AUCAAUGUCGACUAUAAC 2419 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2197,sp|AB020794.1|AB020794 Abies sachalinensis chloroplast DNA, trnS, psaM and trnG genes region. ----isReversed: 0 ----hitSequence: AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUCUGAAUUAGAGGCAUUUAAUAAUCAAUGUCGACUAUAAC hit 116 : 2299 2372 (fwd) 49.47 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---.<<<<-<<_____________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGA.gGgGgGguuagaaauuagaa 59 GAGCCG:AUGA : GAAA : UCA+GU:CGGUUCUGA ::G+G: A UUA+ A 2299 AGGAGCCGAAUGACAUGAAAUUUUCAUGUUCGGUUCUGAaUUAGAGG----CAUUUAAUA 2354 _______>>-->>>>::: 60 uuaacuAcCUACcCcAAu 77 U A U :C AC:: AA+ 2355 AUCAAUGUCGACUAUAAC 2372 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2199,sp|AB020796.2|AB020796 Tsuga diversifolia chloroplast DNA, trnS, psaM and trnG genes region. ----isReversed: 0 ----hitSequence: AGGAGCCGAAUGACAUGAAAUUCUCAUGUUCGGUUCUGAAUUAGAGGCAUUGAAUAAUCAAUGUCGACUAUAAC hit 117 : 2222 2295 (fwd) 47.59 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---.<<<<-<<_____________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGA.gGgGgGguuagaaauuagaa 59 GAGCCG:AUGA : GAAA : UCA+GU:CGGUUCUGA ::G+G: A U A+ A 2222 AGGAGCCGAAUGACAUGAAAUUCUCAUGUUCGGUUCUGAaUUAGAGG----CAUUGAAUA 2277 _______>>-->>>>::: 60 uuaacuAcCUACcCcAAu 77 U A U :C AC:: AA+ 2278 AUCAAUGUCGACUAUAAC 2295 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2206,sp|AB020988.1|AB020988 Magnolia virginiana trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 118 : 2417 2483 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2417 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2466 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2467 UUUUCCCCUAUUGCAAC 2483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2207,sp|AB020989.1|AB020989 Magnolia virginiana trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 119 : 2417 2483 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2417 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2466 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2467 UUUUCCCCUAUUGCAAC 2483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2208,sp|AB020990.1|AB020990 Magnolia grandiflora trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 120 : 2418 2484 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2418 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2467 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2468 UUUUCCCCUAUUGCAAC 2484 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2209,sp|AB020991.1|AB020991 Magnolia guatemalensis trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 121 : 2418 2484 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2418 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2467 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2468 UUUUCCCCUAUUGCAAC 2484 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2210,sp|AB020992.1|AB020992 Magnolia schiedeana trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 122 : 2419 2485 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2419 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2468 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2469 UUUUCCCCUAUUGCAAC 2485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2211,sp|AB020993.1|AB020993 Magnolia sharpii trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 123 : 2417 2483 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2417 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2466 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2467 UUUUCCCCUAUUGCAAC 2483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2212,sp|AB020994.1|AB020994 Magnolia tamaulipana trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 124 : 2419 2485 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2419 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2468 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2469 UUUUCCCCUAUUGCAAC 2485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2213,sp|AB020995.1|AB020995 Magnolia fraseri var. fraseri trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 125 : 2417 2483 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2417 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2466 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2467 UUUUCCCCUAUUGCAAC 2483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2214,sp|AB020996.1|AB020996 Magnolia fraseri var. pyramidata trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 126 : 2417 2483 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2417 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2466 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2467 UUUUCCCCUAUUGCAAC 2483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2215,sp|AB020997.1|AB020997 Magnolia macrophylla trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 127 : 2418 2484 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2418 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2467 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2468 UUUUCCCCUAUUGCAAC 2484 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2216,sp|AB020998.1|AB020998 Magnolia macrophylla trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 128 : 2418 2484 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2418 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2467 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2468 UUUUCCCCUAUUGCAAC 2484 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2217,sp|AB020999.1|AB020999 Magnolia obovata trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 129 : 2419 2485 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2419 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2468 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2469 UUUUCCCCUAUUGCAAC 2485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2218,sp|AB021000.1|AB021000 Magnolia officinalis var. biloba trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 130 : 2419 2485 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2419 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2468 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2469 UUUUCCCCUAUUGCAAC 2485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2219,sp|AB021001.1|AB021001 Magnolia tripetala trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCUUAU hit 131 : 2418 2478 (fwd) 41.20 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G ::GGG:: 2418 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAU-------------- 2463 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 +U ::U CC:: AU 2464 -CUUUUUUUCCCUU-AU 2478 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2220,sp|AB021002.1|AB021002 Magnolia sieboldii subsp. sieboldii trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 132 : 2419 2485 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2419 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2468 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2469 UUUUCCCCUAUUGCAAC 2485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2221,sp|AB021003.1|AB021003 Magnolia sieboldii subsp. japonica trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 133 : 2419 2485 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2419 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2468 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2469 UUUUCCCCUAUUGCAAC 2485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2222,sp|AB021004.1|AB021004 Magnolia coco trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 134 : 2419 2485 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2419 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2468 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2469 UUUUCCCCUAUUGCAAC 2485 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2223,sp|AB021005.1|AB021005 Magnolia delavayi trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 135 : 2421 2487 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2421 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2470 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2471 UUUUCCCCUAUUGCAAC 2487 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2224,sp|AB021006.1|AB021006 Magnolia nitida trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAU hit 136 : 2417 2483 (fwd) 45.39 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2417 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2466 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAAU 2467 UUUUCCCCUAUUGCAAU 2483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2225,sp|AB021007.1|AB021007 Magnolia denudata trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 137 : 2418 2484 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2418 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2467 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2468 UUUUCCCCUAUUGCAAC 2484 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2226,sp|AB021008.1|AB021008 Magnolia kobus trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 138 : 2416 2482 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2416 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2465 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2466 UUUUCCCCUAUUGCAAC 2482 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2227,sp|AB021009.1|AB021009 Magnolia salicifolia trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 139 : 2416 2482 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2416 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2465 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2466 UUUUCCCCUAUUGCAAC 2482 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2228,sp|AB021010.1|AB021010 Magnolia stellata trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 140 : 2416 2482 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2416 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2465 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2466 UUUUCCCCUAUUGCAAC 2482 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2229,sp|AB021011.1|AB021011 Magnolia acuminata trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 141 : 2416 2482 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2416 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2465 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2466 UUUUCCCCUAUUGCAAC 2482 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2230,sp|AB021012.1|AB021012 Magnolia liliiflora trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 142 : 2416 2482 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2416 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2465 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2466 UUUUCCCCUAUUGCAAC 2482 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2231,sp|AB021013.1|AB021013 Magnolia liliifera var. obovata trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCCCCUAUUGCAAC hit 143 : 2421 2487 (fwd) 45.22 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2421 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2470 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2471 UUUUCCCCUAUUGCAAC 2487 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2232,sp|AB021014.1|AB021014 Michelia compressa trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCUCCUAUUGCAAC hit 144 : 2417 2483 (fwd) 46.75 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2417 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2466 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2467 UUUUCUCCUAUUGCAAC 2483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2233,sp|AB021015.1|AB021015 Michelia figo trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUUCUCCUAUUGCAAC hit 145 : 2417 2483 (fwd) 46.75 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2417 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA---------UCUUU 2466 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2467 UUUUCUCCUAUUGCAAC 2483 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2234,sp|AB021016.1|AB021016 Liriodendron chinense trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUCUUUUUUCCCCUAUUGCAAC hit 146 : 2413 2478 (fwd) 46.57 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: U 2413 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA----------UCUU 2461 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2462 UUUUCCCCUAUUGCAAC 2478 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #2235,sp|AB021017.1|AB021017 Liriodendron tulipifera trnK gene, intron. ----isReversed: 0 ----hitSequence: GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGGAGGGAUAUUUUUUCCCCUAUUGCAAC hit 147 : 2414 2479 (fwd) 48.36 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AGCCGU:UG:: :GAAA: ::CA G:ACGGUU:+G G ::GG: A U 2414 GAAAGCCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GGAGGGA----------UAUU 2462 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2463 UUUUCCCCUAUUGCAAC 2479 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3437,sp|AB027348.1|AB027348 Cordyceps ramosopulvinata mitochondrial DNA for small subunit ribosomal RNA. ----isReversed: 0 ----hitSequence: UUGACCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUUAAGGGGGAAAAUCUGAGAGGAUCUACCUAUCUUGAC hit 148 : 2570 2644 (fwd) 62.73 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 ++GA:CCGUAUG::::GAAA::::CACGUACGG:UCU +::G:GGG A+AA U+++A 2570 UUGACCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUUAAGGGGG--AAAAUCUGAGAG 2627 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 A CUACCUA:C:: A+ 2628 GAUCUACCUAUCUUGAC 2644 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3439,sp|AB027350.1|AB027350 Cordyceps sobolifera mitochondrial DNA for small subunit ribosomal RNA. ----isReversed: 0 ----hitSequence: UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUUAAGGGGGAAAGUCCGAGAGGGCCUACCUAUCUUGAC hit 149 : 2716 2790 (fwd) 66.91 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 ++GAGCCGUAUG::::GAAA::::CACGUACGGUUCU +::G:GGG A+A +++A 2716 UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUUAAGGGGG--AAAGUCCGAGAG 2773 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 + CUACCUA:C:: A+ 2774 GGCCUACCUAUCUUGAC 2790 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3440,sp|AB027352.1|AB027352 Cordyceps sp. 97003 mitochondrial DNA for small subunit ribosomal RNA. ----isReversed: 0 ----hitSequence: UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUUAAGGGGGAAAGUUCGAGAGGACCUACCUAUCUUGAC hit 150 : 4265 4339 (fwd) 67.86 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 ++GAGCCGUAUG::::GAAA::::CACGUACGGUUCU +::G:GGG A+A U +++A 4265 UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUUAAGGGGG--AAAGUUCGAGAG 4322 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 A CUACCUA:C:: A+ 4323 GACCUACCUAUCUUGAC 4339 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3443,sp|AB027356.1|AB027356 Cordyceps sp. 97009 mitochondrial DNA for small subunit ribosomal RNA. ----isReversed: 0 ----hitSequence: UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUUAAGGGGGAAAGUUUGAGAGGACCUACCUAUCUUAAC hit 151 : 2535 2609 (fwd) 71.67 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 ++GAGCCGUAUG::::GAAA::::CACGUACGGUUCU +::G:GGG A+A UU+++A 2535 UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUUAAGGGGG--AAAGUUUGAGAG 2592 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 A CUACCUA:C::AA+ 2593 GACCUACCUAUCUUAAC 2609 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3466,sp|AB027572.1|AB027572 Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes. ----isReversed: 1 ----hitSequence: AGGAGCCGAAUGAAAUCAAAAUUUCAUGUUCGGUUUUGAAUUAGAGACGUUAAAAAUAAUCAACCAACGUCGACUAUAAC hit 152 : 1941 1862 (rev) 51.44 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---.<<<<-<<..___________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGA.gGgGgGg..uuagaaauuag 57 :AGCCG:AUGA::: AAA:::UCA+GU:CGGUU:UGA ::G+G: UUA+AAAU+A 19305 AGGAGCCGAAUGAAAUCAAAAUUUCAUGUUCGGUUUUGAaUUAGAGAcgUUAAAAAUAAU 19364 _________>>-->>>>::: 58 aauuaacuAcCUACcCcAAu 77 A + A :C AC:: AA+ 19365 CAACCAACGUCGACUAUAAC 19384 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3899,sp|AB029760.1|AB029760 Polygonatum cirrhifolium chloroplast trnK gene for tRNA-Lys, intron, and matK gene for maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGAAGGGGUCUUUUCCUCUAUUGCNA hit 153 : 2487 2549 (fwd) 33.11 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AG:CGU:UG:: :GAAA: ::CA G:ACG:UU:+G G ::GG: 2487 GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GAAGGGG------------UC 2533 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: C 2534 UUUUCCUCUAUUGC-NA 2549 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3900,sp|AB029761.1|AB029761 Polygonatum humile chloroplast trnK gene for tRNA-Lys, intron, and matK gene for maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGAAGGGGUCUUUUCCUCNAUUGCAA hit 154 : 2498 2560 (fwd) 34.40 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AG:CGU:UG:: :GAAA: ::CA G:ACG:UU:+G G ::GG: 2498 GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GAAGGGG------------UC 2544 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :C A:: C A 2545 UUUUCCUCNAUUGC-AA 2560 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3901,sp|AB029762.1|AB029762 Polygonatum involucratum chloroplast trnK gene for tRNA-Lys, intron, and matK gene for maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGAAGGGGUCUUUUCCUCUAUUGCAA hit 155 : 2498 2560 (fwd) 36.25 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AG:CGU:UG:: :GAAA: ::CA G:ACG:UU:+G G ::GG: 2498 GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GAAGGGG------------UC 2544 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: C A 2545 UUUUCCUCUAUUGC-AA 2560 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3902,sp|AB029763.1|AB029763 Polygonatum oppositifolium chloroplast trnK gene for tRNA-Lys, intron, and matK gene for maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGAAGGGGUCUUUUCCUCUAUUGCAAC hit 156 : 2487 2550 (fwd) 40.17 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AG:CGU:UG:: :GAAA: ::CA G:ACG:UU:+G G ::GG: 2487 GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GAAGGGG------------UC 2533 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2534 UUUUCCUCUAUUGCAAC 2550 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3903,sp|AB029764.1|AB029764 Heteropolygonatum pendulum chloroplast trnK gene for tRNA-Lys, intron, and matK gene for maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGAAGGGGUCUUUUCCUCUAUUGCAAC hit 157 : 2492 2555 (fwd) 40.17 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AG:CGU:UG:: :GAAA: ::CA G:ACG:UU:+G G ::GG: 2492 GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GAAGGGG------------UC 2538 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2539 UUUUCCUCUAUUGCAAC 2555 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3904,sp|AB029765.1|AB029765 Disporopsis aspera chloroplast trnK gene for tRNA-Lys, intron, and matK gene for maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGAAGGGGUCUUUUCCUCUAUUGCAAC hit 158 : 2492 2555 (fwd) 40.17 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AG:CGU:UG:: :GAAA: ::CA G:ACG:UU:+G G ::GG: 2492 GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGG-GAAGGGG------------UC 2538 ______>>-->>>>::: 61 uaacuAcCUACcCcAAu 77 U + :CUA:: CAA+ 2539 UUUUCCUCUAUUGCAAC 2555 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/org.dat.fasta.gz ----sequence: #3905,sp|AB029766.1|AB029766 Disporopsis longifolia chloroplast trnK gene for tRNA-Lys, intron, and matK gene for maturase, complete cds. ----isReversed: 0 ----hitSequence: GAAAGUCGUGUGCAAUGAAAAAUGCAAGCACGGUUUGGGAAGGGGUCUUUUCCUCUAUUGCAAC hit 159 : 2494 2557 (fwd) 40.17 bits ::<<<<<<<<-<<<<<____>>>>>--->>>>>>>>---<<<<-<<______________ 1 gaGAGCCGUAUGagggGAAAcucuCAcGUACGGUUCuGAgGgGgGguuagaaauuagaau 60 GA:AG:CGU:UG:: :GAAA: ::CA G:ACG:UU:+G G ::GG: