params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16102,AF186214.1,1,sp|AF186214.1|AF186214 Arxiozyma telluris RNase P RNA gene; partial sequence.,0,0,53,364,47.73,CUCCUUCUUCCCGCUCCUGGUUCUACGCGGCGUGCGCUGUACCACCAUCGGUGGUUAUGGCGCUUACCCCGUGAGGGGGGCUUGGGGAACCGAGUCUAGCGUUGUUAUAAGAAAUCAAUCUUUUGGAUCCAGCCAGGGUCCUCUAGCAGAAAAGGGGGAUGGGGCUCUCUUGGGCUCUCCCCUCCACGCCUGCGGGAUUCUGAUGGGAAUGACAACGGUCGGUCCAUUUGACUUUAUCAUUACGAUGGUUCUAGUCGUGUUAUGGUAAAGGUCUGUUGAGUGCAAUUGUAGAGCAAAUUGAUUCAAUUUGAA,AF186214.1/53-364,53-364,0,311,AF186214.1/53-364 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16103,AF186215.1,1,sp|AF186215.1|AF186215 Clavispora lusitaniae RNase P RNA gene; partial sequence.,0,1,1,197,29.19,GUUCGCCCCAUCCCUCCCCGUGCGUCUUUCGGGGCGCGCGGGGCGAAAGAAUGCUCCUGAGAGCUUCCUGGGCGGAAAUAUUUCCGCCGGGCGUCGCCAUCAGAAAUUCAGCAGGCUAUGCUUGCAUGGGAGGCGGCGCGGAUGGUUGGUCUCUCACAAUGUGGAGAGGCUGUUGAGUGCAAUUUGCGGCCCUGGCA,AF186215.1/1-197,1-197,0,196,AF186215.1/1-197 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16104,AF186216.1,1,sp|AF186216.1|AF186216 Clavispora opuntiae RNase P RNA gene; partial sequence.,0,2,1,196,28.41,GUUCUCCCCAUCCCUCUCUGGGUGCUUCUGCAUUCAGAGCGAUAUAAUGCUCUUGAGAGCUUCCUGGGCGUAGAUAGUUACGCCGGGCGUCGCCAUCAGAAAAACAGCAGAGCUACGCUUUGCAUGGGAGGCGGCGCGGAUGGUUGGUCUUUCAAUACGAGGAAAGGCUGUUGAGUGCAAUUUGCGGCCUUUGGCA,AF186216.1/1-196,1-196,0,195,AF186216.1/1-196 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16105,AF186217.1,1,sp|AF186217.1|AF186217 Kluyveromyces polysporus RNase P RNA gene; partial sequence.,0,3,6,265,32.72,CAGCAGUUCUCUCUUCGUAAGAAGAGAGAUUGUGUUACCCUUCGUAACACAUUACCCGUGAGGGAACUAUUAGGUGGAAACCUAGUUAGCUUUGUCGUCAUAAGUGAUCAACGUCUUUCCCCUCGAUUUAUUUUCGGCGGGCGAAUGACGGAUGGGAACGGCGAUAGUUACAAUGUUUGACGUAUCACGUGAUAUUAUCACAAGGUAUGGUCUGUUGAGUGCAAUCGUAGGACCCCGGUUGUUAUCUACAACCGGUUGAA,AF186217.1/6-265,6-265,0,259,AF186217.1/6-265 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16106,AF186218.1,1,sp|AF186218.1|AF186218 Kluyveromyces thermotolerans RNase P RNA gene; partial sequence.,0,4,3,219,54.54,ACACAGCGAGACAACAAUCGCCAGGGGCUUCGGCCCUGAUUCUCGUGAGAGAAGCCGCUGGAAAGCGGUUGUGGGCGCUGUCAUCAGAAAUACACAUGUUGGCCGGCGCUAUCGCCGCACCAAUGUGAUGGGAAAGGCAGCGGAUGUCUCGUUUGACUUUGCCUUAGGGUAAAGGUCUGUUGAGUGCAAUGGUAGGAGGCCGCUUUAUGGUGGCCAA,AF186218.1/3-219,3-219,0,216,AF186218.1/3-219 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16107,AF186219.1,1,sp|AF186219.1|AF186219 Pichia canadensis RNase P RNA gene; partial sequence.,0,5,13,333,64.70,UCUGUAUUUUACCUGCCUACAAAAGGAGGAGUCCCCGGCGGACUUCCUCAGUAUUCGCAGGUGGGAAAUUCGGUGAAAUCGCUCUGCCCACCAGGGAAAAGGUAAAACUCUCCCUGGUCCUUGGAAGGACUUGUCCUUCUGAGUCUCGUGAGAGAUGCCAAGCGUGGAGACGCUAGGGUGGUCGCCAUAAGAAACUUCAACAGGUCACACUGUUAUGGGAGGCGCCACGGGCAGUUGGUCCCUUUGCAUCCAGAAGGAAGCUUUGGGGCUGUUGAGUGCAAUAUACAGAGCGCUAGAAGGAGUCCUUCCUUCUACGCGUAA,AF186219.1/13-333,13-333,0,320,AF186219.1/13-333 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16108,AF186220.1,1,sp|AF186220.1|AF186220 Pichia guilliermondii RNase P RNA gene; partial sequence.,0,6,1,182,37.84,GUUCUCUCCGUCCACGGAGGCAGGUUUCUGCCUUCGCACAAAAUGCUCCUGAGAGCGUCCUGGCGCGAAAGCGCCGGGCAGGGCCAUCAGAAAUCAGUCGAGUUUACUUGGCAUGGGAGGCUCUGCGGACGGUUGGUCAUGUGUAUGAACAUGGCUAUUGAGUGCAAUAUGCGAACCUUGAA,AF186220.1/1-182,1-182,0,181,AF186220.1/1-182 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16109,AF186221.1,1,sp|AF186221.1|AF186221 Pichia mississippiensis RNase P RNA gene; partial sequence.,0,7,4,232,83.22,ACCUGCCCACAAAAGGAGCUCCGUGCUCAGAAUUACGCAGGUGGGAAAUUCGGUGGUUCACGCUGUCCAACAUUACCCUUUCUCUUGAGAGAUCCUGGCGAGGAAUCGCUGGGUGCGGCCAUAAGAAAUCAGCCCCCUAAAAAGGGCAUGGGAGGCUGCACGGACAGUUGGUCCUUGGAAAGAGGGCUAUUGAGUGCAAUAUACAGACUGGGGGCUUUGGCCCCUGGAA,AF186221.1/4-232,4-232,0,228,AF186221.1/4-232 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16110,AF186222.1,1,sp|AF186222.1|AF186222 Pichia strasburgensis RNase P RNA gene; partial sequence.,0,8,10,297,86.18,AAGUCUGUAUUUACCUGCCUACACAAGGGGCCCUCUUCCCCCAGAGGGACCCAGCAGGAGCAGGUGGGAAAUUCGGUGGUACACGCCGCCCAUUAAUUUCUCUCUUGAGAGAGUCCAGGCGAGGAAUCGCUAGGGUGUUGCCAUAAGAAAUUCAGUCCGCCUAGCGGGCAUGGGAGGCUUCACGGGCGGUUGGUCCCUAGUGCAAAACUUUCGCGCUAGGAGGCUUUUGAGUGCAAUAUACAGACCGCCUAGUGGUUCCUUGGGAUCAUCUGGGCGGAACGCGAUACC,AF186222.1/10-297,10-297,0,287,AF186222.1/10-297 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16111,AF186223.1,1,sp|AF186223.1|AF186223 Saccharomyces pastorianus RNase P RNA gene; partial sequence.,0,9,9,311,92.31,ACCUGUUUGCAAAAGGGCCUGCCCACGCGGGUCAUCUUAUUUAUCAGGUGGGAAAUUCGGUGGAACACAGUGGAGCCUUGCCUUCCGGGCCAUUGUCUCUGGCAGUGGCCCCUGCUCGUGAGAGAAGAAACUUGCUGGGGAACCAGUCUUUACCGACCGUUGCUAUCAGAAAUUGAACGGGGCCCGGUCCCGCCGGGCCUCGAUGGGAACGGCAACGGUUGUUCCGUUUGACUUGUCGCCCGCCACGGCGCGCUGCAAGGUCUGUUGAGUGCAAUCGUAGGACGCCAUUCGUGGCGAACCCGA,AF186223.1/9-311,9-311,0,302,AF186223.1/9-311 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16112,AF186224.1,1,sp|AF186224.1|AF186224 Saccharomyces dairenensis RNase P RNA gene; partial sequence.,0,10,6,444,89.48,ACAGUGAUGAUUCCUACGUUUUAAGAACCUGUUUACAGAAGGAGGAUAACACUUUAGUGCUUUUCUCAUAUAAGUUCAGGUGGGAAAUUCGGUGAAACACAGCGGAACCAACAACAUCUACCAAGGUGUCGUUGCCCUCCCCAAGCCUAGACGGUGUCUUCUUCUAGGAGGAGCUUAAGUCCAGGUCCUUCCCGUGAGGGCAGUUUUCUUUGCAAUUUUAAAUUUUACUGGGGAACCGGUCUGCCUAAAAAUUGCCAUUGAAGAAUUUAUUGGGACGUCGUUAGCAGAAAUUCACAGAGACCUCUUUCAAAGAAAUUGGUCCCUGAUGGGAACAGCGACGGUAGUUCCAUUUGACUUGUGGUGUGAAAUAAUAUCGACCAUAAGGUCUGUUGAGUGCAAUCGUAGGACAGAUUUGAUUUGAAAAUCUGAACCCGAUCCC,AF186224.1/6-444,6-444,0,438,AF186224.1/6-444 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16113,AF186225.1,1,sp|AF186225.1|AF186225 Saccharomyces servazzii RNase P RNA gene; partial sequence.,0,11,3,234,53.49,ACACAGAGGAUCGAUAAUGACCAGGAACUGUAACAGGUUCUGUUUCCUCGUGAGAGGGGCUUGGGGAACCGAGUCUGGCGUUGCUAUAAGAAAUCUACAGCGUUGUUCGUUACUUGUAACGUGGCAACCCUGAUGGGAAUGGUAACGGAUGAUCCAUUUGACGUACUGCUACCACUUGUGAUAGCGGUAAGGUCUGUUGAGUGCAAUCGUAGAGCAAAUGUUCGCAUUUGAA,AF186225.1/3-234,3-234,0,231,AF186225.1/3-234 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16114,AF186226.1,1,sp|AF186226.1|AF186226 Saccharomyces unisporus RNase P RNA gene; partial sequence.,0,12,3,244,62.21,ACACAGAGGAUCAAUUAUCAAAGACCAGGAACUGUAAAGGGUUCUGUUUCCUCGUGAGAGGGGCUUGGGGAACCGAGUUUGGCGUUGUUAUAAGAAAUCAACAGGGUUUGGUUUGGCAUUUUUCGAAGUGGUUGGCCGAACUCUGAUGGGAAUGGCAACGGAUGAUCCAUUUGACGUAUCACUAUUAACAAGUGAUAAGGUCUGUUGAGUGCAAUCGUAGAGCAAAUGGUAACACAUUUGAA,AF186226.1/3-244,3-244,0,241,AF186226.1/3-244 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16115,AF186227.1,1,sp|AF186227.1|AF186227 Saccharomyces castellii RNase P RNA gene; partial sequence.,0,13,8,329,107.24,ACAGCGACGACUCCUACGACUUAGAGACCUGUUUACACAAGGAGGGUACCCUCCCUCAACCAACAGGUGGGAAAUUCGGUGAAACACAGUGGAAUCAUUCCUUCCAGCCUGGGCUCGCUUCCUUCGGGAAGCUAGGCUCAGGUCUUUCCGUGAGGACAGCCUAGCCGGGGACCGGUCUGCCUGGACGUUGUUAUCAGAAAUUCACACGGGUAACCGUGAUGGGAAAGCAACGAGUGUUUUAUUUGACGGGCUUCUGUUUACACAGUGGUCCAGUCUGUUGAGUGCAAUCGUAGGACAUGCCCUAGGGCUUGAACCCGAUACC,AF186227.1/8-329,8-329,0,321,AF186227.1/8-329 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16116,AF186228.1,1,sp|AF186228.1|AF186228 Saccharomycopsis fibuligera RNase P RNA gene; partial sequence.,0,14,15,243,21.11,UCUGGUAUCCUACGGGAUAGUCCAGGACUAUUGGAUUUAAUUCCAAAUGCUCCUGAGAGCUCCAUAGAGCGGAAGCUCUGGACGAAGCCAUCAGAAAAAUCGCUUACUUGUGAAGUGAUGGGCCACUCUACUUCGGAGUGGCUCAAUGGAAGCGGCUUCGUGGACAGUUGGCUUAGGCCGCCCUCAGGGGCGGUUUGAGCUGUUAAGUGCAAUACACAGACAUUGUGCA,AF186228.1/15-243,15-243,0,228,AF186228.1/15-243 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16117,AF186229.1,1,sp|AF186229.1|AF186229 Torulaspora delbrueckii RNase P RNA gene; partial sequence.,0,15,1,295,84.83,UCCUACGAUUUAGAAACCUGUUUGCUAACGGAGUCUCAGGGCUCACACUAAUAGCAGGUGGGAAAUUCGGUGAAUCACUGCGGAACCCGACAGAGCCUAACAAGCUUUGUCGACCGGUUGCCUUGGCGACUUUUCCGUGAGGAGGGCCUGGGGAACCAGGCUCAUAUGGUCAUUGUCACAAGAAAUCAACUCGGUAGUCCUGUACUAUCGAGGAUGGGAAGGCAAUGGACGUUCCGUUUAACUUGAUCUCAUCAAGGUUUGUUGAGUGCAAUCGUAGGACGGUCUUAGACCUGAA,AF186229.1/1-295,1-295,0,294,AF186229.1/1-295 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16118,AF186230.1,1,sp|AF186230.1|AF186230 Wickerhamia fluorescens RNase P RNA gene; partial sequence.,0,16,29,232,51.40,AACUUUCCUUGAAAGUUUCGGCUUAUGAGUUACAAACUGCUCUUGAGAGCGUCCUUAGCGUGCAAACGCUGGGCGGUGCUAUCAGAAAUUUACCAGUCCUUACUUCGUAUUGGGACUGGAUGGGAAUGGCACUGCGGAUGGUUGGCCCUCUGAAUGAGAGAGAGGGCUUUUGAGUGCAAUAUGCGAACUUGGAUAUUCCAAGAA,AF186230.1/29-232,29-232,0,203,AF186230.1/29-232 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16119,AF186231.1,1,sp|AF186231.1|AF186231 Zygosaccharomyces bailii RNase P RNA gene; partial sequence.,0,17,1,205,32.68,GAACACUGUGGGACACUAUGCCGACCCGCUGACUUUCUCGGUCAACGGGCCGUUUCCGUGAGGAAAGUCUGGGGAACUAGGCUUGCAGCUGCUGUCACAAGAAAUCAACGCUCACAGUAGCGGAUGGGAAGACAGCAGAGUUCCAUUUAGCUUGAACACAACGUUGAUUGUUUAAGGCUUGUUGAGUGCAAUCGUAGGACAAGAA,AF186231.1/1-205,1-205,0,204,AF186231.1/1-205 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16120,AF186232.1,1,sp|AF186232.1|AF186232 Zygosaccharomyces florentinus RNase P RNA gene; partial sequence.,0,18,59,262,51.62,GCCUCUGCAGCGUAAGCUACAUUGGGGACUUUUCCGUGAGGAGGGAUCUUGGGGAACCAAGACCAUAUGGUUGUUGUCAUCAGAAAUCAACCAGGUUACGUAAGUUACCUGGUAUGGGAAGGCAACUGUAAGUUCCGUUUGACUUGUGCUAAUUAGUAUAAGGUCUGUUGAGUGCAAUCGAAGGACAAGUCUUAUAGAUUUGAA,AF186232.1/59-262,59-262,0,203,AF186232.1/59-262 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16121,AF186233.1,1,sp|AF186233.1|AF186233 Zygosaccharomyces rouxii RNase P RNA gene; partial sequence.,0,19,1,295,69.25,UCCUACGCAAUUUUACCUGCCUUCAUAAGGAACUCAAAGGGUUCAGUUAGUACUUAACUUACUAUAUAAGCAGGUGGGAAAUUCGGUGGAACUCUAAGAGACAAUCAGCCGGAUCUUUAGCUUAAUUGUUAAAGAACUGUUUCCGUGAGGAAAGUCUGGGGAACUGGACUUGCAGCUGCUGUCACAAGAAAUCAACGCCCUUUGUUGGUGGAUGGGAAGGCAGUAGAGGUCUCUUUUGGCUUGGAUGCAAAUUUGGACGUCCAAGGCUUGCUGAGUGCAAUCGUGGGACAAAGAA,AF186233.1/1-295,1-295,0,294,AF186233.1/1-295 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,68282,L12745.1,1,sp|L12745.1|SBRPR1B Saccharomyces bayanus RNase P RNA (RPR1) gene.,0,20,413,755,111.69,ACAGUGGUAAUUCCUACGAUUAAGAAACCUGUUUACAGAAGGAUCCCCACCUAUGGGCGGGUUAUCAGAUAUUAUCAGGUGGGAAAUUCGGUGGAACACAGUGGAGCCUUGUCCUCCGGGUUAAUGUCGCUUUUGGCAUUGACCCCUGCUCCUGAGAGAAGAAAUAUACUGGGGAACCAGUCUUUACCGACCGUUGUUAUCAGAAAUUCACGGAGUUCGGCCUAGGUCGGACUCCGAUGGGAACGGCAACGGUUGUUCCGUUUGACUUGUCGCCCGCUACGGCGUGAGCGUCAAGGUCUGUUGAGUGCAAUCGUAGGACGUCAUUUGUGGCGAACCCGAUACC,L12749.1/756-1098 L12745.1/413-755,413-755,0,342,L12745.1/413-755 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,68877,U18530.1,1,sp|U18530.1|SC9871 Saccharomyces cerevisiae chromosome V cosmids 9871; 8199; 9867; 9495 and lambda clones 6693 and 5898.,1,21,28436,28094,111.87,ACAGUGGUAAUUCCUACGAUUAAGAAACCUGUUUACAGAAGGAUCCCCACCUAUGGGCGGGUUAUCAGAUAUUAUCAGGUGGGAAAUUCGGUGGAACACAGUGGAGCCUUGUCCUCCGGGUUAAUGUCGCUUUUGGCAUUGGCCCCUGCUCCUGAGAGAAGAAAUAUACUGGGGAACCAGUCUUUACCGACCGUUGUUAUCAGAAAUUCACGGAGUUCGGCCUAGGUCGGACUCCGAUGGGAACGGCAACGGUUGUUCCGUUUGACUUGUCGCCCGCUACGGCGUGAGCGUCAAGGUCUGUUGAGUGCAAUCGUAGGACGUCAUUAGUGGCGAACCCGAUACC,U18530.1/28436-28094,28436-28094,0,342,U18530.1/28436-28094 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,71382,M27035.1,1,sp|M27035.1|SCRPR1A Saccharomyces cerevisiae RNase P RNA (RPR1) gene.,0,22,413,755,111.16,ACAGUGGUAAUUCCUACGAUUAAGAAACCUGUUUACAGAAGGAUCCCCACCUAUGGGCGGGUUAUCAGUAAUUAUCAGGUGGGAAAUUCGGUGGAACACAGUGGAGCCUUGUCCUCCGGGUUAAUGUCGCUUUUGGCAUUGGCCCCUGCUCCUGAGAGAAGAAAUAUACUGGGGAACCAGUCUUUACCGACCGUUGUUAUCAGAAAUUCACGGAGUUCGGCCUAGGUCGGACUCCGAUGGGAACGGCAACGGUUGUUCCGUUUGACUUGUCGCCCGCUACGGCGUGAGCGUCAAGGUCUGUUGAGUGCAAUCGUAGGACGUCAUUAGUGGCGAACCCGAUACC,M27035.1/413-755,413-755,0,342,M27035.1/413-755 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,71383,L12746.1,1,sp|L12746.1|SCRPR1C Saccharomyces carlsbergensis RNase P RNA (RPR1) gene.,0,23,291,623,104.15,ACAGUGGUGAUUCCUACGAUUAAGAAACCUGUUUGCAAAAGGGCCUGCCCACGCGGGUCAUCUUAUUUAUCAGGUGGGAAAUUCGGUGGAACACAGUGGAGCCUUGCCUUCCGGGCCAUUGUCUCUGGCAGUGGCCCCUGCUCGUGAGAGAAGAAACUUGCUGGGGAACCAGUCUUUACCGACCGUUGCUAUCAGAAAUUGAACGGGGCCCGGUCCCGCCGGGCCUCGAUGGGAACGGCAACGGUUGUUCCGUUUGACUUGUCGCCCGCCACGGCGCGCUGCAAGGUCUGUUGAGUGCAAUCGUAGGACGCCAUUCGUGGCGAACCCGAUACC,L12746.1/291-623,291-623,0,332,L12746.1/291-623 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,75632,L12747.1,1,sp|L12747.1|SDRPR1D Saccharomyces diastaticus RNase P RNA (RPR1) gene.,0,24,413,755,111.69,ACAGUGGUAAUUCCUACGAUUAAGAAACCUGUUUACAGAAGGAUCCCCACCUAUGGGCGGGUUAUCAGAUAUUAUCAGGUGGGAAAUUCGGUGGAACACAGUGGAGCCUUGUCCUCCGGGUUAAUGUCGCUUUUGGCAUUGGCCCCUGCUCCUGAGAGAAGAAAUAUACUGGGGAACCAGUCUUUACCGACCGUUGUUAUCAGAAAUUCACGGAGUUCGGCCUAGGUCGGACUCCGAUGGGAACGGCAACGGUUGUUCCGUUUGACUUGUCGCCCGCUACGGCGUGAGCGUCAAGGUCUGUUGAGUGCAAUCGUAGGACGUCAUUUGUGGCGAACCCGAUACC,L12747.1/413-755,413-755,0,342,L12747.1/413-755 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,75751,L12748.1,1,sp|L12748.1|SGRPR1E Saccharomyces globosus RNase P RNA (RPR1) gene.,0,25,280,592,92.21,GCAGUAGCAACUCCUACGAUUUUAACCUGCUUACGAACUAUUAGUCUGAUCUAAUAAUACAUGCAGGUGGGAAAUUCGGUGAAACACAACAAAUGAGGUUUCAGUUAUUUGGGCUCGUGAGAGCAGCCUGGGGAACCUGGUUAUAAUAGCGGCGCUAUCAGAAAUUCAACGCUAUCAAAUUUUGAUGGUGAUGGGAACGGCGCUAGCAACAAACAUAUUUUAUGUACCUCACGUGUUUGACUUAAUCAUUUACUGGUUAAAGUCUGUUCAGUGCAAUCGUAGGACUUCUAAGCAAUUAGUUGCACCCGAUACC,L12748.1/280-592,280-592,0,312,L12748.1/280-592 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,75844,L12750.1,1,sp|L12750.1|SKRPR1G Saccharomyces kluyveri RNasr P RNA (RPR1) gene.,0,26,273,582,94.38,ACAGUGGCAUUCCUACUACAAACCUGUUUGCACAAGGAGCGGUCGGCGUCAGUCGCACCCUGCUCAGAAAUACAGGUGGGAAAUUCGGUGAAACGCGGCGGAGCAACUAUUUCCGAGGGCCGUUCUCGGUCCUGAUUUCCGUGAGGAAAGCGUUUGGAAUUUAAACGCUUGGACGUUGUCAUCAGAAAUACACCAGUCUCUUGGCUGGAUGGGAAGGCAGCGGAUGCUCCGUUUGACUGUGUUUAGCUUCGGCGACACAGGUCUGUUGAGUGCAAUCGUAGGACACUUCUUAUGAGGUGAACCCGAUACC,L12750.1/273-582,273-582,0,309,L12750.1/273-582 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,76059,X52531.1,1,sp|X52531.1|SORRK1 S.octosporus rrk1 gene for K-RNA (component of RNase P),0,27,55,289,52.25,AACGCCGCACUUCCUCAAAUUCAGACGCACUUUUACAAGUGUUACGCGCAUUGAGGGGGUAAGGUCGGAGGAACUUCUUCGUUGCAUGCUCGUGAGGAGCGGAGGACGAAAGUCCUGCCGGGUGUACCAGAAAUUCGAUCUCUUGGUUCGUCCUUUGAGAUCUUGAAACGCACCCGAGAAGAUGUCUUUUAGUGCAAUGUGCGGCACCUGUGAAAAGUCAGGCAACUCGAUUCCG,X52531.1/55-289,55-289,0,234,X52531.1/55-289 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,76825,AL022598.2,1,sp|AL022598.2|SPCC1795 S.pombe chromosome III cosmid c1795.,1,28,27002,26767,49.30,AACGCCGCACUUCCUCAAAUUCAAACGCGUUGAAAAGCGCACAGCUCGUUGAGGGGGUAAGGUCGGAGAAACAUCUUCGUUGCGUGCUCGUGAGGAGCGAAGAACGAACGUUCUGCCGAAUGUACCAGAAAUUCAAUCAGUAUGGCCUCGUUUGUCGUACCUGAUUUUGAAACGCAUUCGAGAAGAUUUAUUUUAGUGCAAUGUGUGGCACCUGUUUGUCAGGUAACUCGAUUCCG,X52530.1/557-792 X04013.1/212-447 AL022598.2/27002-26767,27002-26767,0,235,AL022598.2/27002-26767 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77308,X04013.1,1,sp|X04013.1|SPKRNAG Fission yeast K RNA gene K1- and K2-RNA co-purified with RNase P activity,0,29,212,447,49.30,AACGCCGCACUUCCUCAAAUUCAAACGCGUUGAAAAGCGCACAGCUCGUUGAGGGGGUAAGGUCGGAGAAACAUCUUCGUUGCGUGCUCGUGAGGAGCGAAGAACGAACGUUCUGCCGAAUGUACCAGAAAUUCAAUCAGUAUGGCCUCGUUUGUCGUACCUGAUUUUGAAACGCAUUCGAGAAGAUUUAUUUUAGUGCAAUGUGUGGCACCUGUUUGUCAGGUAACUCGAUUCCG,X52530.1/557-792 X04013.1/212-447 AL022598.2/27002-26767,212-447,0,235,X04013.1/212-447 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77580,X52530.1,1,sp|X52530.1|SPRRK1 S.pombe rrk1 gene for K-RNA (component of RNase P),0,30,557,792,49.30,AACGCCGCACUUCCUCAAAUUCAAACGCGUUGAAAAGCGCACAGCUCGUUGAGGGGGUAAGGUCGGAGAAACAUCUUCGUUGCGUGCUCGUGAGGAGCGAAGAACGAACGUUCUGCCGAAUGUACCAGAAAUUCAAUCAGUAUGGCCUCGUUUGUCGUACCUGAUUUUGAAACGCAUUCGAGAAGAUUUAUUUUAGUGCAAUGUGUGGCACCUGUUUGUCAGGUAACUCGAUUCCG,X52530.1/557-792 X04013.1/212-447 AL022598.2/27002-26767,557-792,0,235,X52530.1/557-792 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,78027,L12749.1,1,sp|L12749.1|SURPR1F Saccharomyces uvarum RNase P RNA (RPR1) gene.,0,31,756,1098,111.69,ACAGUGGUAAUUCCUACGAUUAAGAAACCUGUUUACAGAAGGAUCCCCACCUAUGGGCGGGUUAUCAGAUAUUAUCAGGUGGGAAAUUCGGUGGAACACAGUGGAGCCUUGUCCUCCGGGUUAAUGUCGCUUUUGGCAUUGACCCCUGCUCCUGAGAGAAGAAAUAUACUGGGGAACCAGUCUUUACCGACCGUUGUUAUCAGAAAUUCACGGAGUUCGGCCUAGGUCGGACUCCGAUGGGAACGGCAACGGUUGUUCCGUUUGACUUGUCGCCCGCUACGGCGUGAGCGUCAAGGUCUGUUGAGUGCAAUCGUAGGACGUCAUUUGUGGCGAACCCGAUACC,L12749.1/756-1098 L12745.1/413-755,756-1098,0,342,L12749.1/756-1098 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5595,AC008221.4,1,sp|AC008221.4|AC008221 Drosophila melanogaster; chromosome 3R; region 100B-100C; BAC clone BACR30B13; complete sequence.,1,32,55055,54778,51.88,CAGUUGCAAACUAGCAUCUGGGGCCCACACAACGAGUAUCUGAUUACUCCACAAACCAUUGCCCCGGGAAGGUCUGAGAAUCGGCCGAGCCAGCUGUUUGUUGCGGCUUCAUUUCCCAGCAGGAAACCUGUGUGAUUGCAGGGCGAAAGUACCAGAAAUCCUGCUACCAGGUGUUGCCGUUGCCCCCGGUGACCGCCGCCUGGUUGGCAUUGAAACCUUUCGUGGCCAGCGUUUUUAGUGCGAUGUGCUUGCUGCCUCUAAGGCAGAACUCAAUUCAG,**** NEW HIT #0 ****,,2,0,AC008221.4/55055-54778 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7793,AE003777.2,1,sp|AE003777.2|AE003777 Drosophila melanogaster chromosome 3R; section 115 of 118 of the complete sequence.,1,33,85280,85003,51.88,CAGUUGCAAACUAGCAUCUGGGGCCCACACAACGAGUAUCUGAUUACUCCACAAACCAUUGCCCCGGGAAGGUCUGAGAAUCGGCCGAGCCAGCUGUUUGUUGCGGCUUCAUUUCCCAGCAGGAAACCUGUGUGAUUGCAGGGCGAAAGUACCAGAAAUCCUGCUACCAGGUGUUGCCGUUGCCCCCGGUGACCGCCGCCUGGUUGGCAUUGAAACCUUUCGUGGCCAGCGUUUUUAGUGCGAUGUGCUUGCUGCCUCUAAGGCAGAACUCAAUUCAG,**** NEW HIT (duplicate of new hit #0) ****,,2,0,AE003777.2/85280-85003 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,45922,AF434763.1,1,sp|AF434763.1|AF434763 Drosophila melanogaster ribonuclease P RNA subunit gene; partial sequence.,0,34,4,281,51.88,CAGUUGCAAACUAGCAUCUGGGGCCCACACAACGAGUAUCUGAUUACUCCACAAACCAUUGCCCCGGGAAGGUCUGAGAAUCGGCCGAGCCAGCUGUUUGUUGCGGCUUCAUUUCCCAGCAGGAAACCUGUGUGAUUGCAGGGCGAAAGUACCAGAAAUCCUGCUACCAGGUGUUGCCGUUGCCCCCGGUGACCGCCGCCUGGUUGGCAUUGAAACCUUUCGUGGCCAGCGUUUUUAGUGCGAUGUGCUUGCUGCCUCUAAGGCAGAACUCAAUUCAG,**** NEW HIT (duplicate of new hit #0) ****,,2,0,AF434763.1/4-281 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,41075,L08685.1,1,sp|L08685.1|GGRNASEP Gorilla RNase P RNA subunit.,0,35,6,321,110.38,GCGGAGGGAAGCUCAUCAGUGGGGCCACGAGCUGAGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGGUCUGAGACUAGGGCCAGAAGCGGCCCUAACAGGGCUCUCCCUGAGCUUCGGGGAGGUGAGUUCCCAGAGAACGGGGCUCCGCGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGCCCUUCGGGGAGGGGCCCGGCGGAUGCCUCCUUUGCCGGAGCUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGCUGAGGUGAGGUACCCCGUAGGGGACCUCAUAACCCAAUUCAN,L08685.1/6-321,6-321,0,315,L08685.1/6-321 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,42624,L08687.1,1,sp|L08687.1|MMRNASEP1 Rhesus monkey RNase P RNA subunit.,0,36,6,321,105.26,GCGGAGGGAAGCUCAUCAGUGGGGCCACGAGCUGAGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGGUCUGAGACUAGGGCCAGAGGCGGCCCUAACAGGGCUCUCCCUGAUCUUCGGGGAGGUGAGUUCCCAGAGAAUGGGGCUCCGCGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGCCCUUCGGGGAGGGGCCCGNCGGAUGCCUCCUUUGCCGGAGCUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGCUGAGGUGAGGUACCCCGGAGGGGACCUCAUAACCCAAUUCAN,L08687.1/6-321,6-321,0,315,L08687.1/6-321 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,46572,L08688.1,1,sp|L08688.1|PPRNASEP Orangutan RNase P RNA subunit.,0,37,6,321,108.34,GCGGAGGGAAGCUCAUCAGUGGGGCCACGUGCUGAGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGGUCUGAGACUAGGGCCAGAGGCGGCCCUAACAGGGCUCUCCCUGAGCUUCGGGGAGGUGAGUUCCCAGAGAACGGGGCUCCGCGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGCCCUUCGGGGAGGGGCCCGGCGGAUGCCUCCUUUGCCGGAGCUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGCUGAGGUGAGGUACCCCGCAGGGGACCUCAUAACCCAAUUCAN,L08688.1/6-321,6-321,0,315,L08688.1/6-321 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,47216,L08686.1,1,sp|L08686.1|PTRNASEP Chimpanzee RNase P RNA subunit.,0,38,6,321,109.53,GCGGAGGGAAGCUCAUCAGUGGGGCCACGAGCUGAGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGGUCUGAGACUAGGGCCAAAGGCGGCCCUAACAGGGCUCUCCCUGAGCUUCGGGGAGGUGAGUUCCCAGAGAACGGGGCUCCACGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGCCCUUCGGGGAGGGGCCCGGCGGAUGCCUCCUUUGCCGGAGCUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGCUGAGGUGAGGUACCCCGCAGGGGACCUCAUAACCCAAUUCAN,L08686.1/6-321,6-321,0,315,L08686.1/6-321 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mam.dat.fasta.gz,50448,L08801.1,1,sp|L08801.1|TSRNASEP Tarsius syrichta RNase P RNA subunit gene sequence.,0,39,25,316,37.77,NNNNNCCACAAGCUGCAUGCCACAUGUCAUCCCACCCCCAUGUCCCUUGGGAAGGUCUGAGUCAAGGGCCAGAGCACCCUAACAGGACUUUCCCUGAGUUUUGGGGAGGUGAAUUCCCAGAGAACUCAGCUCCCUGCGAGGUCAGACUGGGCUGGACAUGCCACGGACCCACCCUUCUGGGAAGGGCCAGGUGGAUGCCUCCUCAGCCAGAACUUGGAACAGACUCAUGGCCAACCAAGUGAGUUCAAUGAGGUGAGGCACCCCACCCAAGGGGCCUCAUAACCCAAUUCAN,L08801.1/25-316,25-316,0,291,L08801.1/25-316 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,4889,AC087183.9,1,sp|AC087183.9|AC087183 Mus musculus Strain C57BL6/J Chromosome 8 RP23-316J6; complete sequence.,1,40,147966,147705,36.45,GCGGAGGAAGCUAAUCAGCAGGGCCACGUGCUGAGUGCUCGUCACUCUUCGGCCCCUGAGAAGGUCUGAGACUGGGGCCUCCCGCGGCCCUAACCGGGCUCUCCCCAAGCGGGGAGGUGAGUUCCCAGAGAGCAGGGCUCUACGUGUGGGCAGGCUGGGCAGGAGAAGUCCCGAGUCGGGGCAGAUGCCUCCCUCGCCGGAGCUUGGAACAGACUCAUGGCCAGCAGAGCGAAUUUUAACCAUUUAUAUUUUUUAACAUGAA,AC087183.9/147966-147705,147966-147705,0,261,AC087183.9/147966-147705 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,14804,AF191547.1,1,sp|AF191547.1|AF191547 Mus musculus poly (ADP-ribose) polymerase 2 (Parp2) gene; complete cds.,1,41,2289,2009,100.25,GCGGAGGAAGCUCAUCAGCGGGGCCACGUGCUGAGUGCUCGUCACUCUUCGGCCCCUGGGAAGGUCUGAGACUGGGGCCUCCCGCGGCCCUAACCGGGCUCUCCCCGAGCGGGGAGGUGAGUUCCCAGAGAGCAGGGCUCUACGCUUGGGCAGACUGGGCAGGAGAAGCCCCGAGUCGGGGCGGAUGCCUCCCUCGCCGGAGCUUGGAACAGACUCACGGCCAGCAGUGCGAGUUCAAUGGCUGAGGUGAGGCACCUCCCGGGCCUCAUAACCCAAUUCAG,AF191547.1/2289-2009,2289-2009,0,280,AF191547.1/2289-2009 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,53560,U24680.1,1,sp|U24680.1|MM24680 Mus musculus RNaseP RNA component; partial sequence.,0,42,1,225,59.33,UGGGAAGGUCUGAGACUGGGGCCUCCCGCGGCCCUAACCGGGCUCUCCCCGAGCGGGGAGGUGAGUUCCCAGAGAGCAGGGCUCUACGCUUGGGCAGACUGGGCAGGAGAAGCCCCGAGUCGGGGCGGAUGCCUCCCUCGCCGGAGCUUGGAACAGACUCACGGCCAGCAGUGCGAGUUCAAUGGCUGAGGUGAGGCACCUCCCGGGCCUCAUAACCCAAUUCAG,U24680.1/1-225,1-225,0,224,U24680.1/1-225 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,54025,U31003.1,1,sp|U31003.1|MM31003 Mus musculus RNAase P RNA subunit (RPRH2) gene; complete sequence.,0,43,349,611,29.38,GCGGAAGAAGUUUAUCAGUGGGGCCACGUGCUGAGUGAUCGUCACUCUUCGGUCCCUGGCAAGGUCUGAGACUGGGGCCUCCCGCAGCCCUAACCGGGCUCUCCCCGAGCGAGGAGAUGAGUUCCCAGAGAGCAGGGCUCUACGAGUGGGCAGACUGGGCAGGAGAAGCCCUGAGUCUGGGCAAGAUGCCUCCCUCGCCAGAGCUUGGAACAGACUCACAGCCAGCAGAGCGAGUUUUAACCAUUUAUUUUUUUUAACAUGAA,U31003.1/349-611,349-611,0,262,U31003.1/349-611 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,54027,U31227.1,1,sp|U31227.1|MM31227 Mus musculus RNAase P RNA subunit (RPRH3) gene; complete sequence.,0,44,436,697,47.54,GCGGAGGAAGCUCAUCAGUGGGGCCACGUGCUGAGUGCUGGUCACUCUUCGGCCCCUGGGCAGGUCUGAGACUGGGGCCUCCCACGGCCCUAACCGGGCUCUCCCUGAGUGGGGAGGUGAGUUCCCAGAGAGCAGGGCUCUAUGCAUGGGCAGACUGGGCAGUAGAAGCCCCAAGUCGGGGUGGAUGCCUCCCUUGCCGGAGCUUGGAACAGACUCACGGCCAGCAGAGCAAGUUUUAACCAUUUAUAUUUUUUAACAUGAA,U31227.1/436-697,436-697,0,261,U31227.1/436-697 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,54028,U31228.1,1,sp|U31228.1|MM31228 Mus musculus RNAase P RNA subunit (RPRH4) gene; complete sequence.,0,45,338,600,33.91,GCGGAGGAAGCUCAUCAGCAGGGCCACGUGCUGAGUGCUCGUCACUCUUCGGCCCCUGAGAAGGUCUGAGACUGGGGCCUCCCGCGGCCCUAACCGGGCUCUCCCCAAGUGGGGAGGUGAAUUCCCAGAGAGCAGGGCUCUACACGUGGGCAGACUGGGCAGGAGGAAGUCCCGAGUCGGGGGGGAUGCCUCCCUCGCCGGAGCUUGGAACAGACUCACGGCCAGCAGAGCGAAUUUUAACCAUUUAUAUUUUUUAACAUGAA,U31228.1/338-600,338-600,0,262,U31228.1/338-600 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/mus.dat.fasta.gz,68848,L08802.1,1,sp|L08802.1|MMRNASEP Mouse RNase P RNA subunit gene sequnce.,0,46,6,290,98.78,GCGGAGGAAGCUCAUCAGCGGGGCCACGUGCUGAGUGCUCGUCACUCUUCGGCCCCUGGGAAGGUCUGAGACUNGGGCCUCCCGCGGCCCUAACCGGGCUCUCCCCGAGCGGGGAGGUGAGUUCCCAGAGAGCAGGGCUCUACGCUUGGGCAGACUGGGCAGGAGAAAAGGCCCCGAGUUCGGGGCGGAUGCCUCCCUCGCCGGAGCUUGGAACAGACUCACGGCCAGCAGUGCGAGUUCAAUGGCUGAGGUGAGGCACCUCCCGGGCCUCAUAACCCAAUUCAN,L08802.1/6-290,6-290,0,284,L08802.1/6-290 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/rod.dat.fasta.gz,19730,L08800.1,1,sp|L08800.1|RNRNASEP Rat RNase P RNA subunit gene sequence.,0,47,25,286,77.16,NNNNCCACGCGCUGAGUGCUCGUCACUCUCUCGGCCCCUGGGAAGGUCUGAGACUGGGGCCUCCCGCCGCCCUAACCGGGCUCUCCCCGAGUGGGGAGGUGAGUUCCCAGAGAGCAGGGCUCCACGCGUGGGCAGACUGGGCAGGAGAAGCCCCCGGGUGGGCGGAUGCCUCCCUCGCCGGGGCUUGGAACAGACUCACGGCCAGCAAUUCGAGUUCAAUGGCUGAGGUGAGGCACCUCGCGGGCCUCAUAACCCAAUUCAN,L08800.1/25-286,25-286,0,261,L08800.1/25-286 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,5139,AF004371.1,1,sp|AF004371.1|AF004371 Pelobates cultripes RNase P RNA gene; partial sequence.,0,48,5,291,93.18,GUGGAGGGAAGCUCAGUGCUGAGGCUACAACCUGAGUGCAUUUGUCACUCUCAUACAUUCCUCAGGGAAGGUCUGAGAUUAGAGCCAUCUAUUGUCUUAACAAGGCAUUGCUUGGUUUGAGCAAAUGAGUUACCAUCAAACCUUGUUCUGUUGUCGCUAGACUGCACAAGUAAUAGAAGUGGUUUUCCUCUAUGGAUGCUGAGGCAACUGAUUUGGAAAGUGACUCAUGACUAGCAAAUUCAAGUUCAAUUGCUGAGAGGAAGUCAUUACUUCCUAACCCAAUUCAG,AF004371.1/5-291,5-291,0,286,AF004371.1/5-291 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,5140,AF004372.1,1,sp|AF004372.1|AF004372 Discoglossus jeanneae RNase P RNA gene; partial sequence.,0,49,1,387,109.47,GCGGAAGGAAGCUCACUGUAGAGGUUACAUACUGAGUGCGUCAAUUCUGUGAUGUCACUUCAUUAUUCCCUCCGGGAAGGUCUGAGACAAGAGCCAAUAGCCGCCCUUACAGGGCGUCACUUGAGCGGGUGAGUGAGUCCCCAGCAACCCCACGGUGGAGUGGACCGGCCCGCUGUGUGGAGGAGGCUCUGCAGGAGAGGCGGGGUGGGCUUGUGGUGAGAGGGAGUGGUCGCAGAUUGAGGCUGCUCCCACCUUACACACGGCUCCACCCGGCUGAUGCUGCCUCCUCCCCGGGCCUUGGAAGUGGCUCUCGGCUGGCUGUAUGAGUCCAAUGGCUGAGGUGGGGCAGCUGCACGGGAUGUGUGCGCGCCCCAUAACCCAAUUCAG,AF004372.1/1-387,1-387,0,386,AF004372.1/1-387 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,5141,AF004373.1,1,sp|AF004373.1|AF004373 Ascaphus truei RNase P RNA gene; partial sequence.,0,50,1,301,104.77,GCGGAAGGAAGCUCACUGUAGAGGCUACUUGCUGGGUGCUGUUGUUACUCUAUCAACCAGCCUUGGGGAAGGUCUGAGAUAAGAGCCACUUGUUGCCUUCACAAGGCAUUGCUUGGUGUAAGCAAGUGAGUUCCCAUCAAAGAUGGCUCAGUUGCAAGCUUAAUGCAAGAGACAUAGCAAAGAAGCCCAAUAUACUUCUGAUAUGGAUGCAAUGCCCAACAGACUGGAAAUGACUCACGGCUGGCAUGUUCAAGCUCAAUGACUGAGGGGAAGCAAGUGAUGGCUUCCUAACCCAAUUCAG,AF004373.1/1-301,1-301,0,300,AF004373.1/1-301 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,5142,AF004374.1,1,sp|AF004374.1|AF004374 Alytes obstetricans RNase P RNA gene; partial sequence.,0,51,1,385,100.77,CGGAAGGAAGCUCACUGUAGAGGUCAUGUACGGAGUGCGUCACAACUGUGAUGUCACUCCAUUAAUUCCUCCGGGAAGGUCUGAGACAGGAGCCAUUAGCUGCCCUCACAGGGCGUCACCUGAGUGGGUGAGUGAGUCCCCAGCAACCCCACGCUGGAGUGGACCGGCUCGACACGUGGAGUGGGCUCUGCAGGAGAGGCGGGGUGGACUGCAGUGAGAGGGUGGAGUUACAGAUUGACACUCCCACCCAACUCAGUGAGGCUCCGCCCAGCUGAUGCCGCCCCCUCCCCGGGCCUUGGAAGUGGCUCACGGCUGGCUGUGUUAGUCCAAUGGCUGAGGUGGAGCAGCUGCACGGGAUGUGUGCGCGCCCCAUAACCCAAUUCAG,AF004374.1/1-385,1-385,0,384,AF004374.1/1-385 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,5143,AF004375.1,1,sp|AF004375.1|AF004375 Euproctus asper RNase P RNA gene; partial sequence.,0,52,1,288,132.35,GCGGAAGGAAGCUCACUGUAGAGGCUACAUGCAGAGUGCAUAUGUCACUCAAGUACCUUGGGGAAGGUCUGAGACAGGAGCCGGUAAUUGCCCCAGCAGGGCAUCCCCUGAAAAGGGGAGCGAGCUCCCAGAGACCCGGGGCCCAAAGGGGGUGGCAUGAGACGCGUGACCGUGUAUCUGGUACUCGCUGAUGCUUACUCCUUCCGGGCAUUGGAAGUGGCUCGCGGCUGGCACUCCCCUGAGUGCAAUGGCUGAGGUGAGGUAAUGGCGCCUCAUAACCCAAUUCAG,AF004375.1/1-288,1-288,0,287,AF004375.1/1-288 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,5144,AF004376.1,1,sp|AF004376.1|AF004376 Lachesis muta RNase P RNA gene; partial sequence.,0,53,1,312,107.90,GCGGAAGGAAGCUCACUGUAGAGGCCACUAGCUUGGGUGUCUAUCACCCUACUUCCGCCUCUGGGAAGGUCUGAGGGAAGGGCCAAAUUGCCGCCCUAGCAGGGUGCCACCUUCUGAAGGUGGGGUGAGUUCCCACCAAUGUGGGUCUCCGAUGAAGCCCUAGAAUUGAGGCAGGAGAAGUGGAGAGGGGUCGUAGGCUCCUCCCCGCGGAUGCCUCUGUGGCUCCGUUCGGGAUUUGGGAAUGACUCACGGCUGGCAGCUUUGAGUACAAUGGGAAGAGGUGAAGCCCGCCAGCUUCAUAACCCAAUUCAG,AF004376.1/1-312,1-312,0,311,AF004376.1/1-312 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,5145,AF004377.1,1,sp|AF004377.1|AF004377 Oncorhynchus sp. RNase P RNA gene; partial sequence.,0,54,3,293,111.89,GCGGAGGGAAGCUCAUCAGUGGGGUCACAUGUAGGGUGCUUGUCACUCAACCAAUCACCUUGGGGAAGGUCUGAGACAAGAGCCAAUCACUUCCCUAGCAGGGUAUCACCUGAUCUGGGUGAGUGAGUGCACAGAGAAUAUGAGCCAUUGUGAGUUGUCUUUACGGAAGAAACCAGCCAGUACAGCUCUCCAGCACUACUGGUGGAUGUGACCUCACUGGCUUGGAAACACUCAUGGCUGGCAUAUGAGUUUAAUGUGUGAGUUGGAGUACACCUCCAGAACCCAAUUCAG,AF004377.1/3-293,3-293,0,290,AF004377.1/3-293 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,6238,AF044325.1,1,sp|AF044325.1|AF044325 Uta stansburiana ribonuclease P RNA gene; partial sequence.,0,55,1,309,120.16,GCGGAAGGAAGCUCACUGUAGAGGUCACUCGCUGGGUGUCUUGAUCACCCCCGUUGCUACCUUGGGGAAGGUCUGAGAGAAGGGCCAAGUGUCGUCCUAGCAGGGCGCCAUCUUAGGAAGGUGGGUGAGUUCCCAGCAAUAUGGAUCUCCAGUAAAGCCCUACUUUGAGGCAGGAGAAGCAGGGCUGGGGGGGUUCCCUCCUCCCUGCGGAUGCCUCCGUGGCUUACUCGGGGUUUGGGAAUGACUCACGGCCGGCAACGUUGAGUACAAUGGGCAGAGGUGGAGCACCCGCUUCAUAACCCAAUUCAG,AF044325.1/1-309,1-309,0,308,AF044325.1/1-309 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,6239,AF044326.1,1,sp|AF044326.1|AF044326 Lachesis muta ribonuclease P RNA gene; partial sequence.,0,56,1,330,87.91,GCGGAAGGAAGCUCACUGUAGAGGCCACUAGCUUGGGUGUCUAUCACCCUACUUCCGCCUGUGGGAAGGUCUGAGGGAAGGGCCAAAUUGCCGCCCUAGCAGGGUGCCACCUUCUGAAGGUGGAGUGAGUUCCCACCAAUGUGGGUCUCCGAUGAAGCCCUAGAAUUGAGGCAGGAGAAGCGGAGAGGGGUCGUGGGUCGUGGGUCGUAGGCAUCCUCCCCGCGGAUGCCUCUGUGGCUCCGUUCGGGAUUUGAGAAUGACUUACGGCUGACAGCUUUGAGUACAAUGGGAAGAGGUGAAGCACCGCCAGCUUCAUAUAACCCAAUUCAG,AF044326.1/1-330,1-330,0,329,AF044326.1/1-330 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,6240,AF044327.1,1,sp|AF044327.1|AF044327 Phrynosoma douglassii ribonuclease P RNA gene; partial sequence.,0,57,1,312,120.22,GCGGAAGGAAGCUCACUGUAGAGGUCACGCGCUGGGUGUAUCGAUCACCCUCCUUGCUACCUUUGGGAAGGUCUGAGAGAAGGGCCAAGUGUCGCCUUAGCAGGGCGCCAUCUUAGGAAGGUGGGUGAGUUCCCAGCAAUAGGGGUCUCCUGUAAUGCCCCAGUUUGAGGCAGGAGAAGCGGGGCUGGAGGGGCUACUCCCUCCUUCCUGCGGAUGCCUCCGUGGCUUACGCGGGGCUUGGGAAUGACUCACGGCCGGCAACGUUGAGUACAAUGGGCAGAGGUGAAGCGGCCGCUUCAUAACCCAAUUCAG,AF044327.1/1-312,1-312,0,311,AF044327.1/1-312 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,6241,AF044328.1,1,sp|AF044328.1|AF044328 Ensatina eschscholtzii ribonuclease P RNA gene; partial sequence.,0,58,1,307,107.70,GCGGAAGGAAGCUCACUGUAGAGGUCAUGUGCCGAGUACAUUUGUUACUCUCUCACCUUGGGGAAGGUCUGAGACAAGAGCCGUUUCUGUCCUUGCAGGACAUCUUCCGAGCCGGGAGAGCGAGCUCCCAGACACUCGGUGCAUGGAGGGGUUUGCACAAGAUGCUAGUUAGUAGUUGGUGGCUUGAUACUGCCUUCCCUGGACUAGUUGAUGCCUAUUCAUCUGGGCAUUGGAAGUGGCUUGUGGCUAGCAUGGCACUGAGUCCAAUGGAUGAGGUGAGGCAACUGUGCCUCAUAACCCAAUUCAG,AF044328.1/1-307,1-307,0,306,AF044328.1/1-307 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,6242,AF044330.1,1,sp|AF044330.1|AF044330 Xenopus laevis ribonuclease P RNA gene; partial sequence.,0,59,5,296,77.65,GUGGAGGGAAGCUCAGUGCUGAGGCUACAGACAGAGUGCUGGGGGUCACUCAGUGAGUGUGACUCAGGGAAGGUCUGAGAUUAGAGCCCCUUGCUGCUCUCACAGGGCAUCACUUGGAUGAAGUGAGUGGGUACUCAGAAAGCUUGGCUCUGAUUGGCCAGUGAGUGCAAAAGAUGCAGUGAGUGCUCCUGGGUUGAGCUCCUGUAGAUGCAAAGGCAUCAGGCUUGGCACUGCCCACAGCUGGCACAUUCAAGCUCAAUGGCUGAGAGGGAACUGCCNCAACCCAAUUCAG,AF044330.1/5-296,5-296,0,291,AF044330.1/5-296 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,6243,AF044331.1,1,sp|AF044331.1|AF044331 Oncorhynchus sp. ribonuclease P RNA gene; partial sequence.,0,60,3,289,113.52,GCGGAGGGAAGCUCAUCAGUGGGGUCACAUGCAGGGUGCUUGUCACUCAACCAAUCACCUUGGGGAAGGUCUGAGACAAGAGCCAAUCACUUCCCUAGCAGGGUAUCACCUGAUGUGAGUGAGUGCACAGAGAAUAUGAGCCAUUGUGAGCUGUCUUUACAGGAGAAACCAGCCAGUGCAGCUCUCCAGCACUACUGGUGGAUGUGACCUCACUGGCUUGGAAACACUCAUGGCUGGCAUAUGAGUGCAAUGUGUGAGUUGGAGUACACCUCCAGAACCCAAUUCAG,AF044331.1/3-289,3-289,0,286,AF044331.1/3-289 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,6251,AF044737.1,1,sp|AF044737.1|AF044737 Bufo bufo ribonuclease P RNA gene; partial sequence.,0,61,1,378,111.99,GCGGAAGGAAGCUCACUGUAGAGGUCACGUGCUGAGUGCGUCACGCUUGUGAUGUCAUCUCUAUCCCACCUCCGGGAAGGUCUGAGACAGGAGCCCCUCGCCGCCCUCACAGGGCGUCACCUGAUAUUCGGGUGAGUGAGCCCCCAGCAACCCACGUUGGAGUGGACCGGUCCGUUAUGUGGGAGAGGCUAUGCAAAAGACGCCGAGCAGGGAUGUGGUGAGAUGGGCGGGUCACUGAUUUGAGGCCCGCCUACUCUUCAUCUGCGCCUCUGCCUGGUGGAUGCCGCCUCCUCCCCGGACCUUGGAAGUGACUCACGGCUGGCUUACUGAGUCCAAUGGCUGAGGCGAGGCAGCUGUGCGCCUCGUAACCCAAUUCAG,AF044737.1/1-378,1-378,0,377,AF044737.1/1-378 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,7434,AF077370.1,1,sp|AF077370.1|AF077370 Bufo calamita RNase P RNA gene; partial sequence.,0,62,1,378,112.67,GCGGAAGGAAGCUCACUGUAGAGGUCACGUGCUGAGUGCGUCACUCUUGUGAUGUCAUCUCUAUCCCACCUCCGGGAAGGUCUGAGACAGGAGCCCCUCGCCGCCCUCACAGGGCGUCACCUGAUGUCGGGUGAGUGAGCCCCCAGCAACCCCACGUUGGAGUGGACCGGUCCGUUAUGUGGGAGUGGCUAUGCAAAAGACACCGGGUAGGGGUGUGGUGAGAUGGGCGGGUCACUGAUUUGAGGUCCGCCCACUCUUCAUCUGCACCUCUGCCUAGUGGAUGCCGCCACCUCCCCGGACCUUGGAAGCGACUCACGGCUGGCUUGCUGAGUCCAAUGGCUGAGGCGAGGCAGCUGUGCGCCUCGUAACCCAAUUCAG,AF077370.1/1-378,1-378,0,377,AF077370.1/1-378 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,24630,AL954692.9,1,sp|AL954692.9|AL954692 Zebrafish DNA sequence from clone CH211-284O19,1,63,92745,92461,121.09,GCGGAAGGAAGCUCACUGUAGAGGUUACCCACUGAGUGCUCGUCACUCGCCAACACCUCGGGGAAGGUCUGAGACAGGAGCCACUCGCUGUCCUAGCAGGACAUCAUCUGAAUGAUGAGCGAGUGCACAGAAAAUCGGGUCACGCGCGCGAUUCUCGCAGCAGACGUUGAUACUCGCACACAUUCAGCGGAUCAACUGAUGCGACGCGCGCAGACUUGGAAACACUCGCGGCUGGCGAAUGAGUGCGAUGUGUGAGCUAGCAUAACAUGCUAGAACCCAAUUCAG,AL954692.9/92745-92461,82862-82579 92745-92461,0,284,AL954692.9/92745-92461 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,24630,AL954692.9,1,sp|AL954692.9|AL954692 Zebrafish DNA sequence from clone CH211-284O19,1,64,82862,82579,106.50,GCGAAAGGAAGCUCACUGUAGAGGUCACUUACUGAGUGCUCGUCACUCGCCAACACCUCGGGGAAGGUCUGAGACAGGAGCUCCUCGCUGACCUAGCAGGACAUCAUCUGAAUGAUGAGCGAGUGCACAGAAAAUCGGGUCACGCGCGCGACUCUCGCAGCAGACGUUGAUGCUCGCACACAUUCAGCGGAUCAACUGAAUGACGCGCGCAGACUUGGAAACACUCGCGGCUGGCGAAUGAGUGCGAUGUGUGAGCUAGCAUAACAUGCUAGAACCCAAUUCAG,AL954692.9/82862-82579,82862-82579 92745-92461,0,283,AL954692.9/82862-82579 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,38041,U50408.1,1,sp|U50408.1|DR50408 Danio rerio ribonuclease P RNA subunit gene.,0,65,5,289,121.30,GCGGAAGGAAGCUCACUGUAGAGGUCACCCACUGAGUGCUCGUCACUCGCCAACACCUCGGGGAAGGUCUGAGACAGGAGCCACUCGCUGUCCUAGCAGGACAUCAUCUGAAUGAUGAGCGAGUGCACAGAAAAUCGGGUCACGCGCGCGAUUCUCGCAGCAGACGUUGAUGCUCGCACACAUUCAGCGGAUCAACUGAUGCGACGCGCGCAGACUUGGAAACACUCGCGGCUGGCGAAUGAGUGCGAUGUGUGAGCUAGCAUAACAUGCUAGAACCCAAUUCAG,U50408.1/5-289,5-289,0,284,U50408.1/5-289 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/vrt.dat.fasta.gz,52333,X56558.1,1,sp|X56558.1|XLXLRNA X.laevis RNase P copurified XL RNA,0,66,5,298,62.86,GUGGAGGGAAGCUCAGUGCUGAGGCUACAGACAGAGUGCUGGGGGUCACUCAGUGAGUGUGACUCAGGGAAGGUCUGAGAUUUAGAGCCCCUUGCUGCUCUCACAGGGCAUCACUUGGANNAAGUGAGUGGUACUCAGGAAAGCUUGGCUCUGAUUGGCCAGUGAGUGCAAAAGAUGCAGUGAGUGCUCCUGGGUUGAGCUCCUGUAGGAUGCAAAGGCAUCAGGCUUGGCACUGCCCACAGCUGGCACAUUCAAGCUCAAUGGCUGAGAGGGAACUGCCNCAACCCAAUUCAG,X56558.1/5-298,5-298,0,293,X56558.1/5-298 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/hum07.dat.fasta.gz,3614,AF479321.1,1,sp|AF479321.1|AF479321 Homo sapiens ADP-ribosyltransferase (NAD+; poly(ADP-ribose) polymerase)-like 2 (ADPRTL2) gene; complete cds.,1,67,1601,1285,106.79,GCGGAGGGAAGCUCAUCAGUGGGGCCACGAGCUGAGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGGUCUGAGACUAGGGCCAAGAGGCGGCCCUAACAGGGCUCUCCCUGAGCUUCGGGGAGGUGAGUUCCCAGAGAACGGGGCUCCGCGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGCCCUUCGGGGAGGGGCCCGGCGGAUGCCUCCUUUGCCGGAGCUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGCUGAGGUGAGGUACCCCGCAGGGGACCUCAUAACCCAAUUCAG,AF479321.1/1601-1285,1601-1285,0,316,AF479321.1/1601-1285 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/hum14.dat.fasta.gz,3577,AL355075.6,1,sp|AL355075.6|CNS05TC9 Human chromosome 14 DNA sequence BAC R-203M5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human),0,68,176559,176874,110.31,GCGGAGGGAAGCUCAUCAGUGGGGCCACGAGCUGAGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGGUCUGAGACUAGGGCCAGAGGCGGCCCUAACAGGGCUCUCCCUGAGCUUCGGGGAGGUGAGUUCCCAGAGAACGGGGCUCCGCGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGCCCUUCGGGGAGGGGCCCGGCGGAUGCCUCCUUUGCCGGAGCUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGCUGAGGUGAGGUACCCCGCAGGGGACCUCAUAACCCAAUUCAG,X16612.1/380-695 AL355075.6/176559-176874,176559-176874,0,315,AL355075.6/176559-176874 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz,7523,X16612.1,1,sp|X16612.1|HSH1DNA Human gene for H1 RNA,0,69,380,695,110.31,GCGGAGGGAAGCUCAUCAGUGGGGCCACGAGCUGAGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGGUCUGAGACUAGGGCCAGAGGCGGCCCUAACAGGGCUCUCCCUGAGCUUCGGGGAGGUGAGUUCCCAGAGAACGGGGCUCCGCGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGCCCUUCGGGGAGGGGCCCGGCGGAUGCCUCCUUUGCCGGAGCUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGCUGAGGUGAGGUACCCCGCAGGGGACCUCAUAACCCAAUUCAG,X16612.1/380-695 AL355075.6/176559-176874,380-695,0,315,X16612.1/380-695 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/hum21.dat.fasta.gz,7525,X15624.1,1,sp|X15624.1|HSH1RNA Human H1 RNA,0,70,5,320,110.45,GCGGAGGGAAGCUCAUCAGUGGGGCCACGAGCUGAGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGGUCUGAGACUAGGGCCAGAGGCGGCCCUAACAGGGCUCUCCCUGAGCUUCAGGGAGGUGAGUUCCCAGAGAACGGGGCUCCGCGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGCCCUUCGGGGAGGGGCCCGGCGGAUGCCUCCUUUGCCGGAGCUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGCUGAGGUGAGGUACCCCGCAGGGGACCUCAUAACCCAAUUCAG,S68670.1/103-418 X15624.1/5-320,5-320,0,315,X15624.1/5-320 ./cmzasha --no-stderr --filter 450 20 Rfam/cm/RF00009.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;126;140;154;81;196 2struct-str data/TryAllCm_5.0/RF00009_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;125;126;139;140;153;154;80;81;195;196 ,Rfam/cm/RF00009.cm (global),/projects/bio/zasha/seqs/embl/hum25.dat.fasta.gz,9330,S68670.1,1,sp|S68670.1|S68670 H1 RNA gene {promoter} [human; Genomic; 497 nt].,0,71,103,418,110.45,GCGGAGGGAAGCUCAUCAGUGGGGCCACGAGCUGAGUGCGUCCUGUCACUCCACUCCCAUGUCCCUUGGGAAGGUCUGAGACUAGGGCCAGAGGCGGCCCUAACAGGGCUCUCCCUGAGCUUCAGGGAGGUGAGUUCCCAGAGAACGGGGCUCCGCGCGAGGUCAGACUGGGCAGGAGAUGCCGUGGACCCCGCCCUUCGGGGAGGGGCCCGGCGGAUGCCUCCUUUGCCGGAGCUUGGAACAGACUCACGGCCAGCGAAGUGAGUUCAAUGGCUGAGGUGAGGUACCCCGCAGGGGACCUCAUAACCCAAUUCAG,S68670.1/103-418 X15624.1/5-320,103-418,0,315,S68670.1/103-418 THINGS IN Rfam THAT WEREN'T FOUND: # hits found that weren't in Rfam: 3 (totally new = 3, overlaps hit in Rfam = 0, overlap hits with more than 10 nucs = 0, total # hits with 0 overlap with Rfam (ignoring sequence matching) = 3) # Rfam hits not found: 0 (no overlap of >= 10 nucs: 0) # Rfam seqs not found: 0 (no overlap of >= 10 nucs: too tricky to calculate)