params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,2165,AB020868.1,1,sp|AB020868.1|AB020868 Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular colorectal and non-small cell lung cancer ; segment 11/11.,1,0,141368,141302,31.49,UGGUAAUGAGUUUAAACCAAAACAAAUGAUUUUGACUCAUUAAAUUAUGAUUACUCAUAAUUACUAA,AC124242.6/65925-65991 AP006208.1/131444-131378 AB020868.1/141368-141302,141368-141302,0,66,AB020868.1/141368-141302
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,4501,AB045364.1,1,sp|AB045364.1|AB045364 Homo sapiens genomic DNA; chromosome 1q22-q23; clone:683m11.,1,1,88628,88555,71.88,GUCUCUGUGGCGCAAUGGACGAGCGCGCUGGACUUCUAAUCCAGAGGUUCCGGGUUCGAGUCCCGGCAGAGAUG,AP002535.1/63877-63804 AB045364.1/88628-88555 AL035403.10/12461-12388,88628-88555,0,73,AB045364.1/88628-88555
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9564,AC002565.1,1,sp|AC002565.1|AC002565 Human Chromosome 16 BAC clone CIT987SK-A-598D4; complete sequence.,1,2,84792,84695,26.26,UAAUAUAUAAUAAAUAUAAUAUAUAUAUUUUUAAAAUAUAAUAUAUUUUUAAUAAUAUAUUUUAAUUUAUUUAAAUAUUUUAAAUAUAUUUAUUUUAA,AC002565.1/84792-84695,84792-84695,0,97,AC002565.1/84792-84695
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9645,AC003101.1,1,sp|AC003101.1|AC003101 Homo sapiens chromosome 17; clone HRPC41C23; complete sequence.,0,3,140108,140179,72.15,GGCGCGGUGGCCAAGUGGUAAGGCGUCGGUCUCGUAAACCGAAGAUCGCGGGUUCGAACCCCGUCCGUGCCU,AC003101.1/140108-140179 AL731726.11/5011-5082,140108-140179,0,71,AC003101.1/140108-140179
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9666,AC003668.2,1,sp|AC003668.2|AC003668 Homo sapiens X PAC RP1-233D13 (Roswell Park Cancer Institute Human PAC Library ) complete sequence.,0,4,138589,138657,36.87,AAGAGCUUAGCUUAAUUAAAGUGGUUGAUUUGUGUUCAAUUGAUGCAGAAUAGAGUCUUGCAGUCCUUA,AL592047.10/63840-63908 AC003668.2/138589-138657,138589-138657 138515-138587,0,68,AC003668.2/138589-138657
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9666,AC003668.2,1,sp|AC003668.2|AC003668 Homo sapiens X PAC RP1-233D13 (Roswell Park Cancer Institute Human PAC Library ) complete sequence.,0,5,138515,138587,36.49,GAGAUUGAGACCAGUUGAUUAAGGUGUUUAGCUGUUAACUAAAUUUUUGUGGGUUUGAAUUCCAUCAAUCUAG,AL592047.10/63766-63838 AC003668.2/138515-138587,138589-138657 138515-138587,0,72,AC003668.2/138515-138587
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9758,AC004034.2,1,sp|AC004034.2|AC004034 Homo sapiens chromosome 16 clone LA16c-321D4; complete sequence.,1,6,19880,19808,39.34,CCCCGGCUGGCUCAGUCAGUAGAUCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCACGCCCCACACUGGGCG,AC004034.2/19880-19808,19880-19808,0,72,AC004034.2/19880-19808
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9759,AC004035.1,1,sp|AC004035.1|AC004035 Homo sapiens chromosome 16; cosmid clone 378E2 (LANL); complete sequence.,0,7,8085,8156,42.91,UAGGACUUGGUGUAAUGGGUAGCACAGAGAAUUUUGGAUUCUCAGGGGUGGGUUCAAUUCCUUUCGUCCUAG,AC025283.6/67382-67453 AC004035.1/8085-8156,5923-5856 9254-9180 8085-8156,0,71,AC004035.1/8085-8156
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9759,AC004035.1,1,sp|AC004035.1|AC004035 Homo sapiens chromosome 16; cosmid clone 378E2 (LANL); complete sequence.,1,8,9254,9180,31.84,UUUAAGAUGGCAGACCCCGGCAAUUACCUAAGACUUAAAACUUUAAAAUCAGAGGUUCAACUCCUCUUCUUAACA,AC004035.1/9254-9180 AC025283.6/68551-68477,5923-5856 9254-9180 8085-8156,0,74,AC004035.1/9254-9180
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9759,AC004035.1,1,sp|AC004035.1|AC004035 Homo sapiens chromosome 16; cosmid clone 378E2 (LANL); complete sequence.,1,9,5923,5856,35.04,UCGAUAUUAGUAAAAUCAUUACAUAACUUUGUCAAAGUUAAGAUAUAGGAUAAACCCUGUAUGUCUUA,AC004035.1/5923-5856 AC025283.6/65220-65153,5923-5856 9254-9180 8085-8156,0,67,AC004035.1/5923-5856
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9838,AC004142.2,1,sp|AC004142.2|AC004142 Homo sapiens BAC clone CTB-118D7 from 7; complete sequence.,0,10,5636,5708,33.90,UAGAUUGAAGCUAGUUGAUUAGGAUAUUUAGCUGUUAACUAAAUUUUUGUGGGUUUGCGUCCCAUUAAUCUAG,AC004142.2/5636-5708,5636-5708,0,72,AC004142.2/5636-5708
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9933,AC004381.1,1,sp|AC004381.1|AC004381 Homo sapiens Chromosome 16 BAC clone CIT987SK-44M2; complete sequence.,1,11,78710,78640,29.85,ACUUUUAAAGGAUAAGAGUCAUCAGUUGGUCUUAGGAACCAAAAACAUUGUUGCAACUCCAAAUAAAAGUA,AC004381.1/78710-78640 X03298.1/87-157,78710-78640,0,70,AC004381.1/78710-78640
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9947,AC004408.1,1,sp|AC004408.1|AC004408 Homo sapiens chromosome 17; clone hRPC.906_A_24; complete sequence.,1,12,53567,53496,76.55,GGGGGUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU,AC004408.1/52810-52739 AC110749.12/7881-7810 AC004408.1/53567-53496 AL591209.17/69715-69644 AC093821.3/97188-97117 AL954851.5/171466-171395 AC006441.13/157644-157573 AL591209.17/69038-68967 AL596446.11/75588-75659,52810-52739 53567-53496,0,71,AC004408.1/53567-53496
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9947,AC004408.1,1,sp|AC004408.1|AC004408 Homo sapiens chromosome 17; clone hRPC.906_A_24; complete sequence.,1,13,52810,52739,76.55,GGGGGUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU,AC004408.1/52810-52739 AC110749.12/7881-7810 AC004408.1/53567-53496 AL591209.17/69715-69644 AC093821.3/97188-97117 AL954851.5/171466-171395 AC006441.13/157644-157573 AL591209.17/69038-68967 AL596446.11/75588-75659,52810-52739 53567-53496,0,71,AC004408.1/52810-52739
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz,9956,AC004448.3,1,sp|AC004448.3|AC004448 Homo sapiens chromosome 17; clone CTB-187M2; complete sequence.,1,14,8714,8643,71.04,GACCUCGUGGCGCAAUGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAGUCACGUCGGGGUCA,AC026682.14/47636-47707 AL669884.7/130627-130556 AC004448.3/8714-8643 AC025627.13/37350-37421,8714-8643,0,71,AC004448.3/8714-8643
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,102,AC004655.1,1,sp|AC004655.1|AC004655 Homo sapiens Xp22-140-141 BAC GSHB-128G5 (Genome Systems Human BAC library) complete sequence.,1,15,5664,5596,29.90,GUGGGUAUAGCUCAGAGGUAGAGCAUUCAACUGCAGAUCGAAGUGGCUGUACCAUUUUGCAUUCCCACC,AC079168.22/83300-83368 AC004655.1/5664-5596,5664-5596,0,68,AC004655.1/5664-5596
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,108,AC004664.1,1,sp|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16; complete sequence.,1,16,69036,68955,28.22,GAUUUUAUGGUGUAAUGGUGAGCACUCUGGACUUGGAAUCCAGAAUUAACAAACAGAACAUCCUGCAAUUUUAUUAAGAGCA,AC004664.1/69036-68955,69036-68955,0,81,AC004664.1/69036-68955
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,287,AC004897.1,1,sp|AC004897.1|AC004897 Homo sapiens PAC clone RP4-811N16 from 7; complete sequence.,0,17,10652,10723,64.87,GGGGGUAUAGCUCACAGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCUGGGUGCCCCCU,AC004897.1/10652-10723,53497-53568 10652-10723 37080-37009,0,71,AC004897.1/10652-10723
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,287,AC004897.1,1,sp|AC004897.1|AC004897 Homo sapiens PAC clone RP4-811N16 from 7; complete sequence.,0,18,53497,53568,72.83,GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU,AC007518.32/56179-56108 M55246.1/211-282 AC012104.6/75021-75092 AC004897.1/53497-53568 AC012104.6/62350-62421 AC012104.6/79272-79343 AC012104.6/94668-94597 AC007518.32/46792-46721 M55247.1/45-116 AC012104.6/58093-58164 AC007518.32/76956-76885 AC004941.2/32735-32806 AC007518.32/3349-3420 AC012104.6/56328-56257 AC012104.6/114750-114679 AC004932.4/141046-141117 AC012104.6/102405-102476 AC073021.12/115433-115362 AC007518.32/50714-50643 AC007518.32/13874-13803 AC007518.32/54547-54618 AC012104.6/48580-48651 AC007518.32/65894-65965 AC012104.6/99094-99165 AC012104.6/76004-76075 AC012104.6/113162-113233,53497-53568 10652-10723 37080-37009,0,71,AC004897.1/53497-53568
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,287,AC004897.1,1,sp|AC004897.1|AC004897 Homo sapiens PAC clone RP4-811N16 from 7; complete sequence.,1,19,37080,37009,65.54,GGGGAUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCC,AC004897.1/37080-37009,53497-53568 10652-10723 37080-37009,0,71,AC004897.1/37080-37009
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,0,20,51899,51970,71.87,GGGGGUAUAGCUCAGGGGUAGAGCACUUGACUGCAGAUCAAGAAGUCCUUGGUUCAAAUCCAGGUGCCCCCU,AC004932.4/51899-51970,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,71,AC004932.4/51899-51970
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,0,21,62070,62141,57.71,GGGCGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAUCUGGGUGCCCACU,AC004932.4/62070-62141,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,71,AC004932.4/62070-62141
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,0,22,63401,63473,49.83,GGGGGUAUAGCUCAGGGCUAGAGCUUUUUGACUGUAGAGCAAGAGGUCCCUGGUUCAAAUCCAGGUUCUCCCU,AC004932.4/63401-63473,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,72,AC004932.4/63401-63473
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,0,23,90084,90155,68.99,GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCUCUGGUUCAAAUCCAGGUGCCCCCU,AC004932.4/90084-90155,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,71,AC004932.4/90084-90155
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,0,24,103314,103385,64.75,GGGCGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAUCUGGGUGCCCCCU,AC004932.4/103314-103385 AK056869.1/777-848,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,71,AC004932.4/103314-103385
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,0,25,113735,113806,53.48,GGGUGUAUGGCUCAGGGGUAGAGAAUUUGACUAGAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU,AC004932.4/113735-113806,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,71,AC004932.4/113735-113806
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,0,26,141046,141117,72.83,GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU,AC007518.32/56179-56108 M55246.1/211-282 AC012104.6/75021-75092 AC004897.1/53497-53568 AC012104.6/62350-62421 AC012104.6/79272-79343 AC012104.6/94668-94597 AC007518.32/46792-46721 M55247.1/45-116 AC012104.6/58093-58164 AC007518.32/76956-76885 AC004941.2/32735-32806 AC007518.32/3349-3420 AC012104.6/56328-56257 AC012104.6/114750-114679 AC004932.4/141046-141117 AC012104.6/102405-102476 AC073021.12/115433-115362 AC007518.32/50714-50643 AC007518.32/13874-13803 AC007518.32/54547-54618 AC012104.6/48580-48651 AC007518.32/65894-65965 AC012104.6/99094-99165 AC012104.6/76004-76075 AC012104.6/113162-113233,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,71,AC004932.4/141046-141117
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,1,27,118495,118424,68.32,GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAAAUCAAGAGGUCCCUGAUUCAAAUCCAGGUGCCCCCU,AC004932.4/118495-118424,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,71,AC004932.4/118495-118424
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,1,28,100644,100573,62.40,GGGGGUAUAGCUCACAGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGUUACUCCCU,AC004932.4/100644-100573,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,71,AC004932.4/100644-100573
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,322,AC004932.4,1,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2; complete sequence.,1,29,94503,94432,75.55,GGGGGUAUAGCUCAGGGGUAGAGCACUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU,AC004932.4/94503-94432,113735-113806 118495-118424 51899-51970 103314-103385 94503-94432 100644-100573 141046-141117 63401-63473 90084-90155 62070-62141,0,71,AC004932.4/94503-94432
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,330,AC004941.2,1,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7; complete sequence.,0,30,11796,11867,78.10,GGGGGCAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU,AC004941.2/11796-11867,79187-79116 58335-58271 32735-32806 57352-57281 116815-116744 107741-107670 77436-77365 11796-11867,0,71,AC004941.2/11796-11867
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,330,AC004941.2,1,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7; complete sequence.,0,31,32735,32806,72.83,GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU,AC007518.32/56179-56108 M55246.1/211-282 AC012104.6/75021-75092 AC004897.1/53497-53568 AC012104.6/62350-62421 AC012104.6/79272-79343 AC012104.6/94668-94597 AC007518.32/46792-46721 M55247.1/45-116 AC012104.6/58093-58164 AC007518.32/76956-76885 AC004941.2/32735-32806 AC007518.32/3349-3420 AC012104.6/56328-56257 AC012104.6/114750-114679 AC004932.4/141046-141117 AC012104.6/102405-102476 AC073021.12/115433-115362 AC007518.32/50714-50643 AC007518.32/13874-13803 AC007518.32/54547-54618 AC012104.6/48580-48651 AC007518.32/65894-65965 AC012104.6/99094-99165 AC012104.6/76004-76075 AC012104.6/113162-113233,79187-79116 58335-58271 32735-32806 57352-57281 116815-116744 107741-107670 77436-77365 11796-11867,0,71,AC004941.2/32735-32806
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,330,AC004941.2,1,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7; complete sequence.,1,32,116815,116744,73.84,GGGGGUAUAGCUUAGCGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU,AC004941.2/116815-116744,79187-79116 58335-58271 32735-32806 57352-57281 116815-116744 107741-107670 77436-77365 11796-11867,0,71,AC004941.2/116815-116744
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,330,AC004941.2,1,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7; complete sequence.,1,33,107741,107670,33.64,GGGGGUAUAGCUGAGGAGUAAACCAUUUGGCUGCAGAUCAAGUGGUCCCUGGUUCAAAUAUGGGUGCCCUCU,AC004941.2/107741-107670,79187-79116 58335-58271 32735-32806 57352-57281 116815-116744 107741-107670 77436-77365 11796-11867,0,71,AC004941.2/107741-107670
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,330,AC004941.2,1,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7; complete sequence.,1,34,79187,79116,71.16,GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCC,AC004941.2/79187-79116,79187-79116 58335-58271 32735-32806 57352-57281 116815-116744 107741-107670 77436-77365 11796-11867,0,71,AC004941.2/79187-79116
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,330,AC004941.2,1,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7; complete sequence.,1,35,77436,77365,67.93,GGGGGUAUAGUUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU,AC004941.2/77436-77365,79187-79116 58335-58271 32735-32806 57352-57281 116815-116744 107741-107670 77436-77365 11796-11867,0,71,AC004941.2/77436-77365
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,330,AC004941.2,1,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7; complete sequence.,1,36,58335,58271,29.67,UCAAUUAUAGCUCAGUGGUAGAGCAUUUAACUGUAGAUCAAGAGGUCCCUGGAUCAACUCUGGGU,AC004941.2/58335-58271,79187-79116 58335-58271 32735-32806 57352-57281 116815-116744 107741-107670 77436-77365 11796-11867,0,64,AC004941.2/58335-58271
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,330,AC004941.2,1,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7; complete sequence.,1,37,57352,57281,71.07,GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAUCUGGGUGCCCCCU,AC004941.2/57352-57281,79187-79116 58335-58271 32735-32806 57352-57281 116815-116744 107741-107670 77436-77365 11796-11867,0,71,AC004941.2/57352-57281
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,365,AC004979.1,1,sp|AC004979.1|AC004979 Homo sapiens PAC clone RP5-1154E9 from 7q31.3-q32; complete sequence.,0,38,55490,55555,54.81,GGUAAAAUGGCUGAGUAAGCAUUAGACUGUAAAUCUAAAGACAGAGGUCAAGGCCUCUUUUUACCA,AC004979.1/55490-55555,55490-55555 56974-57045 55737-55805 58456-58382 55663-55735,0,65,AC004979.1/55490-55555
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,365,AC004979.1,1,sp|AC004979.1|AC004979 Homo sapiens PAC clone RP5-1154E9 from 7q31.3-q32; complete sequence.,0,39,55737,55805,37.58,AAGGGUUUAGCUUAGUUAAAGUGGUUGAUUUGCAUUCAACUGAUGCAGAAUAGAGUCUGGCAGUCCUUA,AC004979.1/55737-55805,55490-55555 56974-57045 55737-55805 58456-58382 55663-55735,0,68,AC004979.1/55737-55805
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,365,AC004979.1,1,sp|AC004979.1|AC004979 Homo sapiens PAC clone RP5-1154E9 from 7q31.3-q32; complete sequence.,0,40,55663,55735,41.82,UAGAUUGAAGCCAGUUGAUUAGGGUGUUUAGCUGUUAACUAAAUUUUCGUGGGUUUGAAUUCCACCAAUCUAG,AC004979.1/55663-55735,55490-55555 56974-57045 55737-55805 58456-58382 55663-55735,0,72,AC004979.1/55663-55735
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,365,AC004979.1,1,sp|AC004979.1|AC004979 Homo sapiens PAC clone RP5-1154E9 from 7q31.3-q32; complete sequence.,0,41,56974,57045,40.78,UAGGACGUGGUGUAGUAGGUAGCAUGGAGAAUGUUGAAUUCUCAGGGGUAGGUUCAAUUCCUAUAGUUCUAG,AC004979.1/56974-57045,55490-55555 56974-57045 55737-55805 58456-58382 55663-55735,0,71,AC004979.1/56974-57045
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,365,AC004979.1,1,sp|AC004979.1|AC004979 Homo sapiens PAC clone RP5-1154E9 from 7q31.3-q32; complete sequence.,1,42,58456,58382,35.42,GUUAAGAUGGCAGAGCCCGGCAAUUGCAUAAAACUUAAAACUUUAUAACUGGAGGUUCAACUCCUCUUCUUCUUC,AC004979.1/58456-58382,55490-55555 56974-57045 55737-55805 58456-58382 55663-55735,0,74,AC004979.1/58456-58382
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,549,AC005225.2,1,sp|AC005225.2|AC005225 Homo sapiens PAC clone RP3-414A15 from 14q24.3; complete sequence.,0,43,71470,71535,47.86,ACCCAGAUAGCUCAGUUGAUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAUGUCCCUGU,AC005225.2/71470-71535,71470-71535,0,65,AC005225.2/71470-71535
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,570,AC005248.1,1,sp|AC005248.1|AC005248 Homo sapiens BAC clone GS1-83B20 from 7p21-p22; complete sequence.,0,44,41110,41183,26.94,GUUCCAGUUGCACAGUUGAUUAGUACACGGUAUUUAUGAUGCCAAGGCUGUAAGUUCAUGCCUCACCUAGAGCA,****    NEW  HIT  #0  ****,,2,0,AC005248.1/41110-41183
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,614,AC005316.1,1,sp|AC005316.1|AC005316 Human Chromosome 15q26.1 PAC clone pDJ10k5 containing human DNA polymerase gamma (polg) gene; complete sequence.,0,45,29120,29192,72.71,GGCCGCGUGGCCUAAUGGAUAAGGCGUCUGACUUCGGAUCAGAAGAUUGCAGGUUCGAGUCCUGCCGCGGUCG,U74651.1/3993-3921 AC005317.2/85887-85959 AF268970.1/811-739 BC031940.1/21-93 AC124068.6/168652-168724 AC005316.1/29120-29192 AF497906.1/1093-1021 AC133637.2/61168-61096,29120-29192,0,72,AC005316.1/29120-29192
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,615,AC005317.2,1,sp|AC005317.2|AC005317 Homo sapiens chromosome 15q26.1 clone PAC pDJ457j11 containing DNA polymerase gamma (polg) gene; complete sequence.,0,46,85887,85959,72.71,GGCCGCGUGGCCUAAUGGAUAAGGCGUCUGACUUCGGAUCAGAAGAUUGCAGGUUCGAGUCCUGCCGCGGUCG,U74651.1/3993-3921 AC005317.2/85887-85959 AF268970.1/811-739 BC031940.1/21-93 AC124068.6/168652-168724 AC005316.1/29120-29192 AF497906.1/1093-1021 AC133637.2/61168-61096,85887-85959,0,72,AC005317.2/85887-85959
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,626,AC005329.1,1,sp|AC005329.1|AC005329 Homo sapiens chromosome 19; cosmid R34382; complete sequence.,0,47,7172,7245,71.49,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG,AL157831.29/159166-159093 AL935128.13/116956-116883 Y00430.1/1945-1872 AL935128.13/117534-117461 AC006449.19/196857-196784 AL138681.17/99546-99473 AC122037.2/152322-152249 AY050218.1/528-455 AL928904.16/74533-74460 AL935128.13/112178-112251 AL592295.25/151818-151745 AC005329.1/7172-7245 AL596123.32/144234-144161 AL928799.12/95383-95456 AC006359.3/106401-106474,7043-6971 7172-7245,0,73,AC005329.1/7172-7245
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,626,AC005329.1,1,sp|AC005329.1|AC005329 Homo sapiens chromosome 19; cosmid R34382; complete sequence.,1,48,7043,6971,74.41,GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCA,BX004780.4/38540-38612 BX248109.8/43336-43264 AL662890.3/61972-61900 K00353.1/1-73 AC005329.1/7043-6971 M17620.1/196-268 AL929561.5/18660-18588 K00636.1/320-248 AC124464.3/127365-127437 BX088523.6/86840-86768 K00351.1/1-73 K00347.1/1-73 AL139318.9/123060-122988 K00350.1/1-73 AL901607.1/43102-43030 AC093719.26/79651-79723 Z84476.7/62744-62672 AL662791.3/16476-16404 AL844539.5/15928-15856 AC126309.8/120252-120180 AL133258.16/56505-56433 AL662865.4/52346-52274 K02686.1/1-73 K02685.1/1-73 K02849.1/1-73 Z14958.1/828-900 K02684.1/1-73 Z57612.1/192-264 Y00430.1/320-248 AP003778.3/179693-179621,7043-6971 7172-7245,0,72,AC005329.1/7043-6971
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,845,AC005678.1,1,sp|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7; complete sequence.,0,49,144418,144490,27.57,GCCUUCUUAGCCCUGGAGGCAGCACAUCAGUCUCAUAAUCUGAAGGUCCCGAGCUUGAACCUCAGAGAGGGCA,Z98745.1/99386-99458 L15363.1/515-587 AC005678.1/144418-144490,152761-152688 142396-142315 144418-144490 138316-138243,0,72,AC005678.1/144418-144490
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,845,AC005678.1,1,sp|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7; complete sequence.,1,50,152761,152688,73.53,GGCUCUAUGGCUUAGUUGGUUAAAGCGCCUGUCUCGUAAACAGGAGAUCCUGGGUUCGACUCCCAGUGGGGCCU,AC005678.1/152761-152688 Z98745.1/107726-107653,152761-152688 142396-142315 144418-144490 138316-138243,0,73,AC005678.1/152761-152688
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,845,AC005678.1,1,sp|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7; complete sequence.,1,51,142396,142315,46.21,GGUAGCGUGGCCGAGUGGUCUAAGACGCUGGAUUAAGGCUCCAGUCUCUUCGGGGGCGUGGGUUUGAAUCCCACCGCUGCCA,AC005678.1/142396-142315 L15362.1/301-220 Z98745.1/97364-97283,152761-152688 142396-142315 144418-144490 138316-138243,0,81,AC005678.1/142396-142315
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,845,AC005678.1,1,sp|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7; complete sequence.,1,52,138316,138243,81.35,GGCUCUAUGGCUUAGUUGGUUAAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGUAGAGCCU,Z98745.1/93285-93212 AC005678.1/138316-138243,152761-152688 142396-142315 144418-144490 138316-138243,0,73,AC005678.1/138316-138243
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,911,AC005783.1,1,sp|AC005783.1|AC005783 Homo sapiens chromosome 19; cosmid R33083; complete sequence.,0,53,26761,26832,66.37,GCGUUGGUGGUAUAGUGGUUAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA,AC005783.1/26761-26832 X64281.1/1096-1025,26761-26832 27398-27326,0,71,AC005783.1/26761-26832
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,911,AC005783.1,1,sp|AC005783.1|AC005783 Homo sapiens chromosome 19; cosmid R33083; complete sequence.,1,54,27398,27326,67.56,GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA,X64281.1/458-530 X17515.1/458-530 AC005783.1/27398-27326,26761-26832 27398-27326,0,72,AC005783.1/27398-27326
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,972,AC005875.2,1,sp|AC005875.2|AC005875 citb_188_b_12; complete sequence.,0,55,87061,87131,29.72,UUAAAUUUAAAUUUAAAAUUAAAUUAUUAAAUUUAAAAUUUAAAUUUUAAAAUUAAAUUAUUAAAUUUAAA,****    NEW  HIT  #1  ****,,2,0,AC005875.2/87061-87131
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1088,AC006045.2,1,sp|AC006045.2|AC006045 Homo sapiens BAC clone RP11-547G15 from 7; complete sequence.,1,56,190068,189999,27.20,AGCAGAGUGGCACAGUUAGAGUGCUGGGCUCAUAAACCAGAUAUUGAUGCACUGUAACCAUCUUCUGCUA,****    NEW  HIT  #2  ****,,2,0,AC006045.2/190068-189999
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1228,AC006312.8,1,sp|AC006312.8|AC006312 Homo sapiens chromosome 9; clone  hRPK.401_G_18; complete sequence.,0,57,104698,104788,41.50,GGCUCUGUGGCGCAAUGGAUAGCGCAUUGGACUUCUAGCUGAGCCUAGUGUGGUCAUUCAAAGGUUGUGGGUUCGAGUCCCACCAGAGUCG,AL359091.10/39362-39272 AC006312.8/104698-104788,104698-104788,0,90,AC006312.8/104698-104788
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1239,AC006324.3,1,sp|AC006324.3|AC006324 Homo sapiens PAC clone RP5-1164F5 from 7; complete sequence.,1,58,144362,144298,25.41,ACUGAAAUCGCUAAAGGGAAAGCUUGAAUUUAAAUUUAUUUAAUGUUCAAAUCAUUAUUUCAGUC,****    NEW  HIT  #3  ****,,2,0,AC006324.3/144362-144298
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1257,AC006345.4,1,sp|AC006345.4|AC006345 Homo sapiens PAC clone RP4-791N16 from 14q24.3; complete sequence.,1,59,104951,104880,72.66,GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU,AL442663.3/142429-142358 AC007518.32/962-1033 AC006345.4/104951-104880,104951-104880,0,71,AC006345.4/104951-104880
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1271,AC006359.3,1,sp|AC006359.3|AC006359 Homo sapiens clone DJ1135M02; complete sequence.,0,60,106401,106474,71.49,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG,AL157831.29/159166-159093 AL935128.13/116956-116883 Y00430.1/1945-1872 AL935128.13/117534-117461 AC006449.19/196857-196784 AL138681.17/99546-99473 AC122037.2/152322-152249 AY050218.1/528-455 AL928904.16/74533-74460 AL935128.13/112178-112251 AL592295.25/151818-151745 AC005329.1/7172-7245 AL596123.32/144234-144161 AL928799.12/95383-95456 AC006359.3/106401-106474,106401-106474,0,73,AC006359.3/106401-106474
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1318,AC006441.13,1,sp|AC006441.13|AC006441 Homo sapiens chromosome 17; clone hRPC.56_K_13; complete sequence.,0,61,155926,155997,74.07,GGGGGUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCU,AL596446.11/77493-77422 AC006441.13/155926-155997 AC110749.12/6163-6234,155926-155997 157644-157573,0,71,AC006441.13/155926-155997
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1318,AC006441.13,1,sp|AC006441.13|AC006441 Homo sapiens chromosome 17; clone hRPC.56_K_13; complete sequence.,1,62,157644,157573,76.55,GGGGGUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU,AC004408.1/52810-52739 AC110749.12/7881-7810 AC004408.1/53567-53496 AL591209.17/69715-69644 AC093821.3/97188-97117 AL954851.5/171466-171395 AC006441.13/157644-157573 AL591209.17/69038-68967 AL596446.11/75588-75659,155926-155997 157644-157573,0,71,AC006441.13/157644-157573
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1324,AC006449.19,1,sp|AC006449.19|AC006449 Homo sapiens chromosome 17; clone hCIT.58_E_17; complete sequence.,1,63,278796,278725,51.61,GGGGGUAGGGCUCAGGGAUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCGAAUCUAGGUGCCCCCU,AC110749.12/41726-41797 AC006449.19/278796-278725,196857-196784 278796-278725,0,71,AC006449.19/278796-278725
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1324,AC006449.19,1,sp|AC006449.19|AC006449 Homo sapiens chromosome 17; clone hCIT.58_E_17; complete sequence.,1,64,196857,196784,71.49,GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG,AL157831.29/159166-159093 AL935128.13/116956-116883 Y00430.1/1945-1872 AL935128.13/117534-117461 AC006449.19/196857-196784 AL138681.17/99546-99473 AC122037.2/152322-152249 AY050218.1/528-455 AL928904.16/74533-74460 AL935128.13/112178-112251 AL592295.25/151818-151745 AC005329.1/7172-7245 AL596123.32/144234-144161 AL928799.12/95383-95456 AC006359.3/106401-106474,196857-196784 278796-278725,0,73,AC006449.19/196857-196784
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1442,AC006970.6,1,sp|AC006970.6|AC006970 Homo sapiens clone RP4-725G10; complete sequence.,0,65,113383,113454,25.43,AUAAUAAUAAUAUAAUUAAUAUAUAUUAUAUUUAUAAUAAUAAUAUAUAUAAUAUAUAUUAUAUUUAUUAUA,****    NEW  HIT  #4  ****,,2,0,AC006970.6/113383-113454
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1629,AC007282.4,1,sp|AC007282.4|AC007282 Homo sapiens BAC clone RP11-484N9 from 2; complete sequence.,1,66,77947,77879,32.66,AAGAUACUAGUAAAAAUGUUACAUAACUUUGUCAAAGUUAAUUUAUAGGUUAAAAUUCUUUAUAUCUUU,AC007282.4/77947-77879,73888-73821 77947-77879,0,68,AC007282.4/77947-77879
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1629,AC007282.4,1,sp|AC007282.4|AC007282 Homo sapiens BAC clone RP11-484N9 from 2; complete sequence.,1,67,73888,73821,26.55,AUUCUUUUAGUAUUAACUGUACAACUGACUUCCAAUCAGUUAGCUUCAGUCUAAGCUGGAAAAUAAUA,AC007282.4/73888-73821,73888-73821 77947-77879,0,67,AC007282.4/73888-73821
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1630,AC007283.3,1,sp|AC007283.3|AC007283 Homo sapiens BAC clone RP11-536I18 from 2; complete sequence.,0,68,23235,23302,35.19,GUAAAUAUAGUUUAAUCAAAAUGUUAGAUUGUGGUCUAAUAAUAGAAGUCCGCAACUUCUUAUUUACC,AC007283.3/23235-23302,23235-23302 23362-23432,0,67,AC007283.3/23235-23302
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1630,AC007283.3,1,sp|AC007283.3|AC007283 Homo sapiens BAC clone RP11-536I18 from 2; complete sequence.,0,69,23362,23432,38.96,ACUUUUAGAGGAUGAGAGUUAUCCAUUGGUCUUAGGAACCAAAAAUAUUGGUGCAACUCCAAAUAAAAGUA,AC007283.3/23362-23432,23235-23302 23362-23432,0,70,AC007283.3/23362-23432
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1636,AC007298.17,1,sp|AC007298.17|AC007298 Homo sapiens 12q22 BAC RPCI11-256L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,70,145366,145295,61.42,UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG,AC135178.13/162274-162345 AL607107.8/9736-9665 K00441.1/101-172 AF037471.1/313-384 AL021918.1/28582-28653 U65080.1/1738-1667 Z14958.1/464-535 AL831711.4/4374-4303 Z14958.1/1083-1154 AL645902.6/56225-56296 AL589879.21/140557-140486 X00229.1/778-849 X00228.1/485-556 AL590385.22/12354-12283 M26850.1/6-77 K00438.1/101-172 AL590385.22/27145-27074 AL589879.21/111480-111551 K00435.1/101-172 AC093719.26/67849-67920 AC124415.4/73254-73325 AC115458.5/53940-54011 AC007298.17/145366-145295 AL590385.22/4973-4902 V01272.1/1753-1824 AL021918.1/52652-52723 AC115458.5/26108-26037 AL590385.22/19764-19693 AL589879.21/135735-135664 AC115458.5/44744-44815 K00444.1/101-172 AC126309.8/119753-119682,145366-145295,0,71,AC007298.17/145366-145295
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1649,AC007324.55,1,sp|AC007324.55|AC007324 Homo sapiens chromosome 22 clone b293 map 22q11; complete sequence.,0,71,67230,67298,25.00,AUAUAUAUAUAUAAAAUAUAUAUAUAAUGUAUUUAAUAUAUAUAUAAUAUAUUAAAUAUAUUAUAUAUA,****    NEW  HIT  #5  ****,,2,0,AC007324.55/67230-67298
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1650,AC007325.51,1,sp|AC007325.51|AC007325 Homo sapiens chromosome 22 clone b48 map 22q11; complete sequence.,0,72,117424,117495,25.89,AUAUGAUUAUAUAAUUGUAUAUAAUUAUAUAUAUAAUAUAAUAAUAUAUAAUAUCUAUUAUUAUAUCAUAUA,****    NEW  HIT  #6  ****,,2,0,AC007325.51/117424-117495
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1766,AC007529.5,1,sp|AC007529.5|AC007529 Homo sapiens 12p13 BAC RPCI11-69C13 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,73,110761,110685,25.11,UUAUAUAUAUAUAAAAUUAUAUAUAUAUAAUAUAUAUUAUAUAUAUAAAAUUAUAUAUACAAUAUAUAUUAUAUAUA,****    NEW  HIT  #7  ****,,2,0,AC007529.5/110761-110685
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1784,AC007557.3,1,sp|AC007557.3|AC007557 Homo sapiens BAC clone RP11-53G8 from 2; complete sequence.,1,74,53334,53264,27.63,ACUUUUAAAUAAUAGAAGUAAUACAUUGGCCUUAAAAGCCAAGAAAAUUGGUGCAGCUCCAAAUAAAAGUA,AC007557.3/53334-53264,53334-53264,0,70,AC007557.3/53334-53264
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1799,AC007595.9,1,sp|AC007595.9|AC007595 Homo sapiens chromosome 16 clone RP11-109M19; complete sequence.,1,75,136923,136857,34.64,UGAUAAAUAGUUUAAGUUAAAAUAAAUGAUUUUGACUCAUUAGAUUAUGAUAGACCAUAUUUACUAA,AC007595.9/136923-136857 AC074136.4/104681-104747,136923-136857 135066-134996 135194-135126,0,66,AC007595.9/136923-136857
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1799,AC007595.9,1,sp|AC007595.9|AC007595 Homo sapiens chromosome 16 clone RP11-109M19; complete sequence.,1,76,135066,134996,36.23,ACUUUUAAAGGAUAAGAGUUAUCCAUUGGUCUCAGGAACCAAAAACAUCGGUGCAACUCCAAAUAAAAGUA,AC007595.9/135066-134996,136923-136857 135066-134996 135194-135126,0,70,AC007595.9/135066-134996
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1799,AC007595.9,1,sp|AC007595.9|AC007595 Homo sapiens chromosome 16 clone RP11-109M19; complete sequence.,1,77,135194,135126,36.51,GUAAAUAUAGUUUAACCAAAACAUUAGACUAUGAAUCUAACAAUAGAAGCCCGCAACUUCUUAUCUACC,AC007595.9/135194-135126,136923-136857 135066-134996 135194-135126,0,68,AC007595.9/135194-135126
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1837,AC007656.2,1,sp|AC007656.2|AC007656 Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute Human BAC Library) complete sequence.,1,78,94156,94083,27.72,GGCAAUGUAGCAUUGUGGCUAAGUGCACAGGCUUUGGAAACUGGCAGGCCUGGGUUCAAAUCCCAGCUUAUUCA,****    NEW  HIT  #8  ****,,2,0,AC007656.2/94156-94083
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,1888,AC007780.10,1,sp|AC007780.10|AC007780 Homo sapiens chromosome 17; clone CTD-2004N4; complete sequence.,1,79,70771,70697,26.99,GGCAGAAUGGUGCAGCGGUUCAGCACCCAGGCUCUGCAGCCAGCUGUUGCCUGGGCUCAAAUCCCAGCUCUGCCA,****    NEW  HIT  #9  ****,,2,0,AC007780.10/70771-70697
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2012,AC008079.24,1,sp|AC008079.24|AC008079 Homo sapiens chromosome 22 clone bac519d21 map 22q11; complete sequence.,0,80,169384,169452,25.00,AUAUAUAUAUAUAAAAUAUAUAUAUAAUGUAUUUAAUAUAUAUAUAAUAUAUUAAAUAUAUUAUAUAUA,****    NEW  HIT (duplicate of new hit #5)   ****,,2,0,AC008079.24/169384-169452
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2141,AC008434.5,1,sp|AC008434.5|AC008434 Homo sapiens chromosome 5 clone CTC-325J23; complete sequence.,0,81,9050,9120,25.33,GUUUAUGUAGCUUACUUCCUCAAAGCAAUACACUGAAAAUGUUUCGACAGGCUCAUACCACCCCAUAAACA,AC008434.5/9050-9120,10069-10137 9050-9120,0,70,AC008434.5/9050-9120
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2141,AC008434.5,1,sp|AC008434.5|AC008434 Homo sapiens chromosome 5 clone CTC-325J23; complete sequence.,0,82,10069,10137,37.24,CAGAGUGUAGCUUAACAUAAAGCACCCAACUUACACUUAGGAGAUUUCAACUCAACUUGACCACUCUGA,AB062521.1/101-169 AB062526.1/101-169 AB065139.1/76-144 AB062516.1/101-169 AB062542.1/67-135 AB062537.1/92-160 AB050151.1/100-168 AB062538.1/85-153 AB062541.1/83-151 AB062536.1/92-160 AB062523.1/101-169 AB062513.1/101-169 D38116.1/1022-1090 AB050147.1/90-158 AB065143.1/76-144 AB062540.1/83-151 AC117444.6/38069-38001 AB062518.1/101-169 AB062535.1/95-163 AB065141.1/83-151 AB050149.1/98-166 AB062531.1/96-164 AB062534.1/95-163 AB062539.1/84-152 AB062520.1/101-169 D38113.1/1021-1089 AB062525.1/101-169 AC008434.5/10069-10137 AB062515.1/101-169 AB050148.1/92-160 AB062533.1/95-163 AB050150.1/100-168 AB065142.1/82-150 X93335.1/1028-1096 AB062528.1/100-168 AB062532.1/95-163 AB062517.1/101-169 AB062530.1/98-166 AB062524.1/101-169 AB062514.1/101-169 AB062519.1/101-169 AB062529.1/99-167 AF420033.1/186-254 AB062522.1/100-168 AB062527.1/100-168,10069-10137 9050-9120,0,68,AC008434.5/10069-10137
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,0,83,8240,8321,56.69,GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGGGGCGUGGGUUCGAAUCCCACCGCUGCCA,AC009034.10/160932-161013 AL163195.5/24802-24721 AL163636.7/42206-42287 AC008443.10/8240-8321 AC145398.1/25700-25781 AL662865.4/14236-14155 AL645849.17/116778-116697 BX248109.8/5241-5160 AC092338.4/14357-14438 AL662871.9/79593-79512 AL954865.13/19749-19668 AL807389.7/16474-16555 M28027.1/1-82 Z84476.7/24705-24624 M15274.1/1378-1459,12297-12226 8240-8321 43006-42934 38881-38809 9464-9393 27407-27478 9027-8955 42590-42518 28294-28366,0,81,AC008443.10/8240-8321
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,0,84,27407,27478,70.04,GGGGAUGUAGCUCAGUGGUAGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA,AL645849.17/94223-94152 AC008443.10/27407-27478 AC126309.8/114163-114092,12297-12226 8240-8321 43006-42934 38881-38809 9464-9393 27407-27478 9027-8955 42590-42518 28294-28366,0,71,AC008443.10/27407-27478
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,0,85,28294,28366,68.31,GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG,AC008339.2/148576-148504 AC007121.1/18866-18938 AC008345.3/71195-71123 K01634.1/167-239 AC009342.5/30723-30651 AC008257.5/31852-31780 AC008339.2/155196-155124 AC008288.8/120174-120246 AL935128.13/117815-117743 AE003790.2/277585-277513 AL121936.17/93911-93983 AC008257.5/11946-11874 AE003784.4/210660-210588 AC008339.2/126072-126000 AE003794.3/98758-98830 AF091512.1/22701-22629 AL935274.13/85848-85920 AC008257.5/40667-40595 AL714025.12/40265-40337 AJ003147.1/116699-116627 AC007452.1/226-298 AL928799.12/94851-94779 K01636.1/201-273 AE003784.4/217280-217208 AE003790.2/278131-278059 AE003477.3/25725-25797 AC008443.10/42590-42518 AC009342.5/32199-32127 K01637.1/406-478 AL935274.13/84578-84650 V00227.1/718-790 X03601.1/98-170 AC008288.8/117849-117921 AC008339.2/149612-149684 AF091512.1/40923-40995 AE003790.2/278980-278908 V00229.1/205-277 AE003784.4/208465-208393 V00243.1/150-222 AC097725.2/39603-39675 V00228.1/382-454 K00292.1/1-73 AJ003147.1/134921-134993 K00288.1/1-73 AC008288.8/118698-118770 AE003818.3/234614-234542 AL355505.16/4016-3944 AC009342.5/33048-32976 AC008257.5/34047-33975 AC008339.2/146381-146309 Y00460.1/2866-2794 AE003477.3/26084-26012 AE003784.4/211696-211768 AL935274.13/87968-88040 AL935274.13/94748-94820 AL645849.17/93678-93606 X04545.1/1-73 K00290.1/1-73 AC009342.5/31653-31581 V00244.1/445-373 AC091634.1/88901-88973 M33940.1/961-1033 AC122037.2/150519-150591 AC097725.2/39962-39890 AE003790.2/276655-276583 AC008257.5/35083-35155 AC008443.10/28294-28366 AC008288.8/119244-119316 AE003784.4/188559-188487,12297-12226 8240-8321 43006-42934 38881-38809 9464-9393 27407-27478 9027-8955 42590-42518 28294-28366,0,72,AC008443.10/28294-28366
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,1,86,43006,42934,68.11,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,M33940.1/545-617 K00254.1/1-73 AC008443.10/43006-42934 AL645849.17/78265-78337 BX000993.6/110731-110659 AL121936.17/75419-75491 AL592295.25/123440-123368 AC115458.5/17424-17352 AC008620.12/44572-44500 M15784.1/720-792 AC008620.12/115897-115969 AL590614.8/43904-43976 AL714025.12/50139-50067 AC008620.12/39317-39389,12297-12226 8240-8321 43006-42934 38881-38809 9464-9393 27407-27478 9027-8955 42590-42518 28294-28366,0,72,AC008443.10/43006-42934
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,1,87,42590,42518,68.31,GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG,AC008339.2/148576-148504 AC007121.1/18866-18938 AC008345.3/71195-71123 K01634.1/167-239 AC009342.5/30723-30651 AC008257.5/31852-31780 AC008339.2/155196-155124 AC008288.8/120174-120246 AL935128.13/117815-117743 AE003790.2/277585-277513 AL121936.17/93911-93983 AC008257.5/11946-11874 AE003784.4/210660-210588 AC008339.2/126072-126000 AE003794.3/98758-98830 AF091512.1/22701-22629 AL935274.13/85848-85920 AC008257.5/40667-40595 AL714025.12/40265-40337 AJ003147.1/116699-116627 AC007452.1/226-298 AL928799.12/94851-94779 K01636.1/201-273 AE003784.4/217280-217208 AE003790.2/278131-278059 AE003477.3/25725-25797 AC008443.10/42590-42518 AC009342.5/32199-32127 K01637.1/406-478 AL935274.13/84578-84650 V00227.1/718-790 X03601.1/98-170 AC008288.8/117849-117921 AC008339.2/149612-149684 AF091512.1/40923-40995 AE003790.2/278980-278908 V00229.1/205-277 AE003784.4/208465-208393 V00243.1/150-222 AC097725.2/39603-39675 V00228.1/382-454 K00292.1/1-73 AJ003147.1/134921-134993 K00288.1/1-73 AC008288.8/118698-118770 AE003818.3/234614-234542 AL355505.16/4016-3944 AC009342.5/33048-32976 AC008257.5/34047-33975 AC008339.2/146381-146309 Y00460.1/2866-2794 AE003477.3/26084-26012 AE003784.4/211696-211768 AL935274.13/87968-88040 AL935274.13/94748-94820 AL645849.17/93678-93606 X04545.1/1-73 K00290.1/1-73 AC009342.5/31653-31581 V00244.1/445-373 AC091634.1/88901-88973 M33940.1/961-1033 AC122037.2/150519-150591 AC097725.2/39962-39890 AE003790.2/276655-276583 AC008257.5/35083-35155 AC008443.10/28294-28366 AC008288.8/119244-119316 AE003784.4/188559-188487,12297-12226 8240-8321 43006-42934 38881-38809 9464-9393 27407-27478 9027-8955 42590-42518 28294-28366,0,72,AC008443.10/42590-42518
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,1,88,38881,38809,66.43,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,AC008443.10/38881-38809 AL645849.17/116360-116432 AC008620.12/106401-106473 M15782.1/523-595 BX000993.6/70661-70733 AC078802.14/42766-42838 BX000993.6/109328-109400 AC008620.12/111857-111929 AL009179.1/81624-81552 X17514.1/624-696 M33940.1/4683-4755 X17516.1/527-599,12297-12226 8240-8321 43006-42934 38881-38809 9464-9393 27407-27478 9027-8955 42590-42518 28294-28366,0,72,AC008443.10/38881-38809
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,1,89,12297,12226,70.56,GGCUCCAUAGCUCAGGGGUUAGAGCACUGGUCUUGUAAACCAGGGUCGCGAGUUCAAAUCUCGCUGGGGCCU,AC008443.10/12297-12226,12297-12226 8240-8321 43006-42934 38881-38809 9464-9393 27407-27478 9027-8955 42590-42518 28294-28366,0,71,AC008443.10/12297-12226
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,1,90,9464,9393,59.56,GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC,X56626.1/1-72 AJ003147.1/147323-147394 AC108134.3/170446-170517 AL645849.17/116003-116074 AJ003147.1/118173-118244 AC008443.10/9464-9393 M27835.1/241-312 AL163636.7/116104-116175 AJ003147.1/143433-143362 AF091512.1/24175-24246 K00360.1/1-72 AF091512.1/49456-49385 X57443.1/1-72 AF091512.1/53407-53478,12297-12226 8240-8321 43006-42934 38881-38809 9464-9393 27407-27478 9027-8955 42590-42518 28294-28366,0,71,AC008443.10/9464-9393
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2147,AC008443.10,1,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12; complete sequence.,1,91,9027,8955,66.43,GUUUCCGUAGUGUAGUGGUCAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,M27835.1/680-752 AC008443.10/9027-8955,12297-12226 8240-8321 43006-42934 38881-38809 9464-9393 27407-27478 9027-8955 42590-42518 28294-28366,0,72,AC008443.10/9027-8955
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2200,AC008512.8,1,sp|AC008512.8|AC008512 Homo sapiens chromosome 5 clone CTC-454K8; complete sequence.,1,92,95691,95623,38.29,GUUUAUGUAGCUUAAUUAUUAAAAGCAAGACACUGAAAAUGUCUAGACGGACUUAUUACCCCAUAAACA,AC021080.4/79998-79930 AC026409.4/83611-83679 AC008580.7/7078-7146 AC008512.8/95691-95623,95691-95623,0,68,AC008512.8/95691-95623
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2202,AC008514.8,1,sp|AC008514.8|AC008514 Homo sapiens chromosome 5 clone CTC-455F18; complete sequence.,1,93,13184,13114,25.57,GUAUGAAUAGUAUAAUUUUGAAUAUACUACAUUUUAGGUUAGAGGCCUAAGAGCUAGUCUUAGUUUAUUCU,****    NEW  HIT  #11  ****,,2,0,AC008514.8/13184-13114
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2253,AC008580.7,1,sp|AC008580.7|AC008580 Homo sapiens chromosome 5 clone CTC-564J15; complete sequence.,0,94,7078,7146,38.29,GUUUAUGUAGCUUAAUUAUUAAAAGCAAGACACUGAAAAUGUCUAGACGGACUUAUUACCCCAUAAACA,AC021080.4/79998-79930 AC026409.4/83611-83679 AC008580.7/7078-7146 AC008512.8/95691-95623,7078-7146,0,68,AC008580.7/7078-7146
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2283,AC008620.12,1,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14; complete sequence.,0,95,39317,39389,68.11,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,M33940.1/545-617 K00254.1/1-73 AC008443.10/43006-42934 AL645849.17/78265-78337 BX000993.6/110731-110659 AL121936.17/75419-75491 AL592295.25/123440-123368 AC115458.5/17424-17352 AC008620.12/44572-44500 M15784.1/720-792 AC008620.12/115897-115969 AL590614.8/43904-43976 AL714025.12/50139-50067 AC008620.12/39317-39389,44087-44168 116372-116291 106401-106473 39802-39721 44572-44500 111857-111929 115897-115969 39317-39389,0,72,AC008620.12/39317-39389
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2283,AC008620.12,1,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14; complete sequence.,0,96,44087,44168,56.69,GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA,AC008620.12/44087-44168 AC008620.12/116372-116291 AC008620.12/39802-39721,44087-44168 116372-116291 106401-106473 39802-39721 44572-44500 111857-111929 115897-115969 39317-39389,0,81,AC008620.12/44087-44168
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2283,AC008620.12,1,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14; complete sequence.,0,97,106401,106473,66.43,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,AC008443.10/38881-38809 AL645849.17/116360-116432 AC008620.12/106401-106473 M15782.1/523-595 BX000993.6/70661-70733 AC078802.14/42766-42838 BX000993.6/109328-109400 AC008620.12/111857-111929 AL009179.1/81624-81552 X17514.1/624-696 M33940.1/4683-4755 X17516.1/527-599,44087-44168 116372-116291 106401-106473 39802-39721 44572-44500 111857-111929 115897-115969 39317-39389,0,72,AC008620.12/106401-106473
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2283,AC008620.12,1,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14; complete sequence.,0,98,111857,111929,66.43,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,AC008443.10/38881-38809 AL645849.17/116360-116432 AC008620.12/106401-106473 M15782.1/523-595 BX000993.6/70661-70733 AC078802.14/42766-42838 BX000993.6/109328-109400 AC008620.12/111857-111929 AL009179.1/81624-81552 X17514.1/624-696 M33940.1/4683-4755 X17516.1/527-599,44087-44168 116372-116291 106401-106473 39802-39721 44572-44500 111857-111929 115897-115969 39317-39389,0,72,AC008620.12/111857-111929
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2283,AC008620.12,1,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14; complete sequence.,0,99,115897,115969,68.11,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,M33940.1/545-617 K00254.1/1-73 AC008443.10/43006-42934 AL645849.17/78265-78337 BX000993.6/110731-110659 AL121936.17/75419-75491 AL592295.25/123440-123368 AC115458.5/17424-17352 AC008620.12/44572-44500 M15784.1/720-792 AC008620.12/115897-115969 AL590614.8/43904-43976 AL714025.12/50139-50067 AC008620.12/39317-39389,44087-44168 116372-116291 106401-106473 39802-39721 44572-44500 111857-111929 115897-115969 39317-39389,0,72,AC008620.12/115897-115969
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2283,AC008620.12,1,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14; complete sequence.,1,100,116372,116291,56.69,GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA,AC008620.12/44087-44168 AC008620.12/116372-116291 AC008620.12/39802-39721,44087-44168 116372-116291 106401-106473 39802-39721 44572-44500 111857-111929 115897-115969 39317-39389,0,81,AC008620.12/116372-116291
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2283,AC008620.12,1,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14; complete sequence.,1,101,44572,44500,68.11,GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA,M33940.1/545-617 K00254.1/1-73 AC008443.10/43006-42934 AL645849.17/78265-78337 BX000993.6/110731-110659 AL121936.17/75419-75491 AL592295.25/123440-123368 AC115458.5/17424-17352 AC008620.12/44572-44500 M15784.1/720-792 AC008620.12/115897-115969 AL590614.8/43904-43976 AL714025.12/50139-50067 AC008620.12/39317-39389,44087-44168 116372-116291 106401-106473 39802-39721 44572-44500 111857-111929 115897-115969 39317-39389,0,72,AC008620.12/44572-44500
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2283,AC008620.12,1,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14; complete sequence.,1,102,39802,39721,56.69,GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA,AC008620.12/44087-44168 AC008620.12/116372-116291 AC008620.12/39802-39721,44087-44168 116372-116291 106401-106473 39802-39721 44572-44500 111857-111929 115897-115969 39317-39389,0,81,AC008620.12/39802-39721
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2318,AC008661.6,1,sp|AC008661.6|AC008661 Homo sapiens chromosome 5 clone CTB-28J9; complete sequence.,0,103,31869,31952,25.15,AUAUAUAUAAUAUAAUAUAUAAUAUAUAUUUAAGAUAUAUAAUAUAUGAGAUAUAUAAUAUAUAUUUGAGAUAUAUUAUAUAUA,****    NEW  HIT  #12  ****,,2,0,AC008661.6/31869-31952
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2326,AC008670.6,1,sp|AC008670.6|AC008670 Homo sapiens chromosome 5 clone CTB-36O1; complete sequence.,0,104,81864,81928,32.52,UGGUAUAUAGUUCAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAUAAUCAUAUUUACCAA,AC008670.6/81864-81928,81864-81928 83725-83795 86201-86133 83597-83665,0,64,AC008670.6/81864-81928
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2326,AC008670.6,1,sp|AC008670.6|AC008670 Homo sapiens chromosome 5 clone CTB-36O1; complete sequence.,0,105,83725,83795,39.74,ACUUUUAAAGGAUAACAGCCAUCCGUUGGUCUUAGGCCCCAAAAAUUUUGGUGCAACUCCAAAUAAAAGUA,AC114770.4/40513-40443 D38116.1/11685-11755 AC008670.6/83725-83795 V00672.1/587-657 AC113407.2/177048-176978,81864-81928 83725-83795 86201-86133 83597-83665,0,70,AC008670.6/83725-83795
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2326,AC008670.6,1,sp|AC008670.6|AC008670 Homo sapiens chromosome 5 clone CTB-36O1; complete sequence.,0,106,83597,83665,45.05,GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUCACGACCCCUUAUUUACC,V00672.1/459-527 D38113.1/11556-11624 D38116.1/11557-11625 X93335.1/11563-11631 AC008670.6/83597-83665,81864-81928 83725-83795 86201-86133 83597-83665,0,68,AC008670.6/83597-83665
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2326,AC008670.6,1,sp|AC008670.6|AC008670 Homo sapiens chromosome 5 clone CTB-36O1; complete sequence.,1,107,86201,86133,36.86,GUUCUUGUAGUUGAAAUACAAUGAUGGUUUUUCAUAUCAUUGGUCGUGGUUGUAGCCCGUGCAAGAAUA,AC008670.6/86201-86133,81864-81928 83725-83795 86201-86133 83597-83665,0,68,AC008670.6/86201-86133
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2369,AC008724.4,1,sp|AC008724.4|AC008724 Homo sapiens chromosome 5 clone CTB-95C16; complete sequence.,0,108,6879,6947,25.80,AUAUAUAUAUAUAAAAUAUAUAUUAUAUAUUUUAUAUAUAUUAUAUAUAUAAAAUAUAUAUUAUAUAUU,****    NEW  HIT  #13  ****,,2,0,AC008724.4/6879-6947
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2379,AC008738.7,1,sp|AC008738.7|AC008738 Homo sapiens chromosome 19 clone CTD-2540B15; complete sequence.,0,109,46176,46249,75.50,GGCGCCGUGGCUUAGUUGGUUAAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCGGUGCCU,AL645902.6/53094-53167 AC135178.13/158275-158348 AL645902.6/78058-77985 AC129492.6/182036-182109 AL807389.7/14729-14656 AC106019.4/24840-24913 AC008738.7/46176-46249,46176-46249,0,73,AC008738.7/46176-46249
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2605,AC009019.10,1,sp|AC009019.10|AC009019 Homo sapiens chromosome 16 clone RP11-101E7; complete sequence.,1,110,177983,177902,61.69,GGUAGCGUGGCCGAGUGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCAUUUCGAUGGCGUGGGUUCGAAUCCCACCGCUGCCA,AC122248.5/6931-6850 AC009034.10/59584-59503 AC009019.10/177983-177902 AC122214.4/144596-144515,177983-177902,0,81,AC009019.10/177983-177902
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2614,AC009034.10,1,sp|AC009034.10|AC009034 Homo sapiens chromosome 16 clone RP11-141O15; complete sequence.,0,111,160932,161013,56.69,GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGGGGCGUGGGUUCGAAUCCCACCGCUGCCA,AC009034.10/160932-161013 AL163195.5/24802-24721 AL163636.7/42206-42287 AC008443.10/8240-8321 AC145398.1/25700-25781 AL662865.4/14236-14155 AL645849.17/116778-116697 BX248109.8/5241-5160 AC092338.4/14357-14438 AL662871.9/79593-79512 AL954865.13/19749-19668 AL807389.7/16474-16555 M28027.1/1-82 Z84476.7/24705-24624 M15274.1/1378-1459,160932-161013 59584-59503,0,81,AC009034.10/160932-161013
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2614,AC009034.10,1,sp|AC009034.10|AC009034 Homo sapiens chromosome 16 clone RP11-141O15; complete sequence.,1,112,59584,59503,61.69,GGUAGCGUGGCCGAGUGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCAUUUCGAUGGCGUGGGUUCGAAUCCCACCGCUGCCA,AC122248.5/6931-6850 AC009034.10/59584-59503 AC009019.10/177983-177902 AC122214.4/144596-144515,160932-161013 59584-59503,0,81,AC009034.10/59584-59503
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2661,AC009104.10,1,sp|AC009104.10|AC009104 Homo sapiens chromosome 16 clone RP11-44L9; complete sequence.,1,113,91438,91366,80.33,GCCUGGAUAGCUCAGUUGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCAGGCA,AC009104.10/91438-91366,91438-91366,0,72,AC009104.10/91438-91366
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2666,AC009111.8,1,sp|AC009111.8|AC009111 Homo sapiens chromosome 16 clone RP11-468D1; complete sequence.,1,114,53304,53230,25.80,UAUUAAAUUUUAAUUUAAUUAUUUUAAAUUAAAAUUUUAAUUUAAUUAUUUUAAAUUAAAAUUUUAAUUUAAUUA,****    NEW  HIT  #14  ****,,2,0,AC009111.8/53304-53230
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2687,AC009140.6,1,sp|AC009140.6|AC009140 Homo sapiens chromosome 16 clone RP11-53K15; complete sequence.,0,115,51121,51189,34.04,GUUCUUAUAGUUGAAGUACAACGAUGAGUUUUCAUGUCAUUAGUCACGGUUAUAGUCCAUGUGGGAAUA,AC138304.1/109639-109571 AC009140.6/51121-51189,49977-49911 51121-51189,0,68,AC009140.6/51121-51189
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2687,AC009140.6,1,sp|AC009140.6|AC009140 Homo sapiens chromosome 16 clone RP11-53K15; complete sequence.,1,116,49977,49911,31.09,GUCCUUGUAGUAUAAUUCAAUACUCUGGUCUUGUAAACCAGAAAUGGAGAAUUCCCUCCCCAGGACA,AC009140.6/49977-49911 AC138304.1/110783-110849,49977-49911 51121-51189,0,66,AC009140.6/49977-49911
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2802,AC009358.6,1,sp|AC009358.6|AC009358 Human Chromosome 7 clone RP11-191E5; complete sequence.,1,117,167089,167022,31.63,UCCUCAUUAGUAUAGUGAUAUCCCUGCCUGUCACGCGGGAGACCAGGGUUCGAUUCCCAGACAAGGAG,AC009358.6/167089-167022,167089-167022,0,67,AC009358.6/167089-167022
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2881,AC009509.7,1,sp|AC009509.7|AC009509 Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,118,104277,104349,57.46,ACCCAGAUAGCUCAGUCAGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAAGGUUCAUGUCCCUUUUUGGGUG,AC009509.7/104277-104349,104277-104349,0,72,AC009509.7/104277-104349
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,2974,AC009808.8,1,sp|AC009808.8|AC009808 Homo sapiens chromosome 8; clone RP11-138K8; complete sequence.,1,119,85683,85616,27.34,AGAAAUUUAGGUUAAACAAGACCAAGAGCCUUCAAAGCCCUUAGUAAGUAGACUAUACUUAAUUUCUG,AC105082.6/166977-166910 AF201337.3/32179-32112 AF301237.3/166980-166913 AC009808.8/85683-85616,85683-85616,0,67,AC009808.8/85683-85616
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3001,AC009946.2,1,sp|AC009946.2|AC009946 Homo sapiens clone RP11-12C17; complete sequence.,1,120,124890,124818,51.00,GCCCAGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUUGAGCCCCACGUUUGGUG,AL590440.1/18829-18757 AC009946.2/124890-124818,124890-124818,0,72,AC009946.2/124890-124818
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3013,AC009960.10,1,sp|AC009960.10|AC009960 Homo sapiens BAC clone RP11-354N12 from 2; complete sequence.,0,121,85906,85973,32.02,AAGAUGUUAGUAAAAUUAUUACAUAACUUUGUCAGAGCGAAUUUAUAGGUUAAAUCCUAUAUGUCUUA,AC009960.10/85906-85973,88749-88815 91032-91097 85902-85834 85906-85973,0,67,AC009960.10/85906-85973
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3013,AC009960.10,1,sp|AC009960.10|AC009960 Homo sapiens BAC clone RP11-354N12 from 2; complete sequence.,0,122,88749,88815,38.85,UUGUAAAUAGUUUAAGUCAAAAUAAAUGAUUUUGACUCAUUAGAUUAUGGUAGACCAUAUUUACCAA,AC009960.10/88749-88815,88749-88815 91032-91097 85902-85834 85906-85973,0,66,AC009960.10/88749-88815
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3013,AC009960.10,1,sp|AC009960.10|AC009960 Homo sapiens BAC clone RP11-354N12 from 2; complete sequence.,0,123,91032,91097,52.61,GGUAAAAUGGCUGAGCAAGCAUUAGACUGUAAAUCUAAAGACAGAGGUUAAGGCCUCUUUUUACCA,AC009960.10/91032-91097,88749-88815 91032-91097 85902-85834 85906-85973,0,65,AC009960.10/91032-91097
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3013,AC009960.10,1,sp|AC009960.10|AC009960 Homo sapiens BAC clone RP11-354N12 from 2; complete sequence.,1,124,85902,85834,29.81,AAGAGAGUCAUAGAAGUUAUGGGAUUGGCUUGAAACCAAUUUCUGGAAGUUCAAUUCCUUCCUUUCUUG,AC009960.10/85902-85834,88749-88815 91032-91097 85902-85834 85906-85973,0,68,AC009960.10/85902-85834
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3035,AC009994.10,1,sp|AC009994.10|AC009994 Homo sapiens chromosome 17; clone RP11-87N3; complete sequence.,0,125,122322,122395,43.81,AGCACCAUGGCUUAGCUGGUUAAAGCACCUGUCUAGUAAACAGGAGAUCCUGAGUUUCAAUUCCAAUGGUGCCU,AC009994.10/122322-122395,122322-122395,0,73,AC009994.10/122322-122395
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3050,AC010087.3,1,sp|AC010087.3|AC010087 Homo sapiens BAC clone RP11-241M13 from 2; complete sequence.,1,126,28032,27960,48.77,GGUUCCAUAGUGUAACAGUUAUCAUGUCUGCUUUACACACUGAAGGUCCUGGGUUCAAACUCCAGUGGAACCA,****    NEW  HIT  #15  ****,,2,0,AC010087.3/28032-27960
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3156,AC010253.5,1,sp|AC010253.5|AC010253 Homo sapiens chromosome 5 clone CTC-432B14; complete sequence.,0,127,23136,23204,30.51,GAAGAAGUCAUGGAGGUUAUGGGAUUGGCUUGAAACCAGUCUUUGGGGGUUCAAUUCCUUCCUUUUUCA,AC010253.5/23136-23204 AC091978.3/172207-172275 AC091967.3/106070-106002,23132-23065 23136-23204,0,68,AC010253.5/23136-23204
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3156,AC010253.5,1,sp|AC010253.5|AC010253 Homo sapiens chromosome 5 clone CTC-432B14; complete sequence.,1,128,23132,23065,42.76,AAGAUAUUAGUAAAAUUAUUUCAUAACUUUGUCAAAGUUAAGUUAUAGGUUAAGCCCUAUAUAUCUUA,AC091978.3/172203-172136 AC010253.5/23132-23065 AC091967.3/106074-106141 AC099654.5/62250-62317,23132-23065 23136-23204,0,67,AC010253.5/23132-23065
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3204,AC010317.5,1,sp|AC010317.5|AC010317 Homo sapiens chromosome 5 clone CTB-88J14; complete sequence.,0,129,109122,109193,45.01,UCCUCAUCAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACUGGGGUUCGAUUCCCUGAGGAGGAG,AC021081.5/40018-40089 AC010317.5/109122-109193,109122-109193,0,71,AC010317.5/109122-109193
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3349,AC010513.6,1,sp|AC010513.6|AC010513 Homo sapiens chromosome 19 clone LLNLR-232H11; complete sequence.,0,130,16499,16570,25.82,UAUAUUUUAUAUAUAUAUAAAUAUAUAUAUUUAUAUUAUAUAAAUAUAUAUAUUUAUAUUAUAUAAAUAUAU,****    NEW  HIT  #16  ****,,2,0,AC010513.6/16499-16570
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3365,AC010531.8,1,sp|AC010531.8|AC010531 Homo sapiens chromosome 16 clone RP11-178L8; complete sequence.,1,131,143700,143628,67.01,GCCUCGUUAGCGCAGUAGGCAGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACACGGGGCA,AC105429.1/90637-90709 AC010531.8/143700-143628,143700-143628,0,72,AC010531.8/143700-143628
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3374,AC010546.10,1,sp|AC010546.10|AC010546 Homo sapiens chromosome 16 clone RP11-50O21; complete sequence.,0,132,28655,28729,25.80,UAUUAAAUUUUAAUUUAAUUAUUUUAAAUUAAAAUUUUAAUUUAAUUAUUUUAAAUUAAAAUUUUAAUUUAAUUA,****    NEW  HIT (duplicate of new hit #14)   ****,,2,0,AC010546.10/28655-28729
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3375,AC010547.9,1,sp|AC010547.9|AC010547 Homo sapiens chromosome 16 clone RP11-510M2; complete sequence.,0,133,32420,32492,67.10,GCCCUCUUAGCGCAGUGGGCAGCGCGUCAGUCUCAUAAUCUGAAGGUCCUGAGUUCGAGCCUCAGAGAGGGCA,AC010547.9/32420-32492,32420-32492,0,72,AC010547.9/32420-32492
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3409,AC010619.7,1,sp|AC010619.7|AC010619 Homo sapiens chromosome 19 clone CTD-3148I10; complete sequence.,1,134,121919,121847,47.02,ACCUGGGUAGCUUAGUUGGUAGAGCAUUGGACUUUUAAUUUGAGGGCCCAGGUUUCAAGUCCCUGUUUGGGUG,AC010619.7/121919-121847,121919-121847,0,72,AC010619.7/121919-121847
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3515,AC010888.12,1,sp|AC010888.12|AC010888 Homo sapiens BAC clone RP11-418N16 from 2; complete sequence.,1,135,38908,38844,31.04,AAUUAAUUAGUAUUAAUUAUAUUAUACUUCUAUUAUAAUUAUUAUAAUUCUAUUAUAAUUAAUUA,****    NEW  HIT  #18  ****,,2,0,AC010888.12/38908-38844
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3592,AC011146.10,1,sp|AC011146.10|AC011146 Homo sapiens chromosome 8; clone RP11-2F15; complete sequence.,1,136,84585,84519,25.38,AUAUAUAUAAAUUAUAUAUUAUAUUUAUAUUAUAUAUAAAUUAUAUAUUAUAUUUAUAUUAUAUAUA,****    NEW  HIT  #19  ****,,2,0,AC011146.10/84585-84519
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3647,AC011302.3,1,sp|AC011302.3|AC011302 Homo sapiens BAC clone RP11-333E9 from Y; complete sequence.,1,137,15852,15784,26.45,AUUUAUAAAUUUAAAUGAUAAAUUUAAAUUCUAAAUUUAAAAUAUAUAACAUAUAUUUAUAUAUAAAUA,****    NEW  HIT  #20  ****,,2,0,AC011302.3/15852-15784
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3701,AC011375.5,1,sp|AC011375.5|AC011375 Homo sapiens chromosome 5 clone CTB-119L1; complete sequence.,0,138,82979,83050,25.24,AUAUAUAUAAUAUAUAUAUUUUUAUAUAUAUAUUAUAUAUAUAUUAUAUAUAUUAUAUAUAUAUUUUAUAUA,****    NEW  HIT  #21  ****,,2,0,AC011375.5/82979-83050
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3763,AC011456.2,1,sp|AC011456.2|AC011456 Homo sapiens chromosome 19 clone CTC-360P9; complete sequence.,0,139,112297,112364,27.86,GUUUCCAUGGUGUAAUGGUGAGCACUCUGGACUCUGAAUCCAGAAAUACAUUCAAAGAAUUAAGAACA,AC011456.2/112297-112364,112297-112364,0,67,AC011456.2/112297-112364
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3766,AC011460.3,1,sp|AC011460.3|AC011460 Homo sapiens chromosome 19 clone CTC-429C10; complete sequence.,0,140,76075,76147,47.29,CUGCAGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUCGUGCCCCAUGUUGGGUG,AC011460.3/76075-76147,76075-76147,0,72,AC011460.3/76075-76147
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3776,AC011470.5,1,sp|AC011470.5|AC011470 Homo sapiens chromosome 19 clone CTC-490M10; complete sequence.,1,141,91409,91336,25.26,AUAUAUUUAUAUAUAAUAUUAAAAUAUAUAUUAAUUAUAUUAAUAUAUUUAUAUAUGAAAAUAUAUAAUGUAUA,****    NEW  HIT  #22  ****,,2,0,AC011470.5/91409-91336
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3780,AC011474.6,1,sp|AC011474.6|AC011474 Homo sapiens chromosome 19 clone CTC-525D6; complete sequence.,0,142,80079,80171,26.37,AUAUAUUUAAUAUAUAUUUUAUAUAUAAUAUAUUUAAAAUAUAUAUUAUAUAUAAUAUAUUAUAUAUAAUAUAUUUAAAAUAUAUAUUAUAUA,****    NEW  HIT  #23  ****,,2,0,AC011474.6/80079-80171
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3805,AC011500.7,1,sp|AC011500.7|AC011500 Homo sapiens chromosome 19 clone CTB-60E11; complete sequence.,1,143,17084,16992,44.91,GCUCCAGUGGCGCAAUCGGUUAGCGCGCGGUACUUAUAUGACAGUGCGAGCGGAGCAAUGCCGAGGUUGUGAGUUCGAUCCUCACCUGGAGCA,AC011500.7/17084-16992,17084-16992,0,92,AC011500.7/17084-16992
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3815,AC011510.7,1,sp|AC011510.7|AC011510 Homo sapiens chromosome 19 clone CTD-2195B23; complete sequence.,1,144,70860,70788,50.03,GCCAGGAUAGUUCAGGUGGUAGAGCAUCAGACUUUUAACCUGAGGGUUCAGGGUUCAAGUCUCUGUUUGGGCG,AC011510.7/70860-70788,70860-70788,0,72,AC011510.7/70860-70788
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3840,AC011535.7,1,sp|AC011535.7|AC011535 Homo sapiens chromosome 19 clone LLNLR-243C6; complete sequence.,0,145,21443,21515,25.48,AUAUAUAUAAUAUAUAUAUUAUAUAUAUAUAUUAUAUAUAUAAUAUAUAUAUAUUAUAUAUAUAUUAUAUAUA,****    NEW  HIT  #24  ****,,2,0,AC011535.7/21443-21515
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3840,AC011535.7,1,sp|AC011535.7|AC011535 Homo sapiens chromosome 19 clone LLNLR-243C6; complete sequence.,1,146,21516,21444,25.68,AUAUAUAUAAUAUAUAUAUAAUAUAUAUAUAUUAUAUAUAUAAUAUAUAUAUAUAAUAUAUAUAUUAUAUAUA,****    NEW  HIT  #25  ****,,2,0,AC011535.7/21516-21444
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3897,AC011716.7,1,sp|AC011716.7|AC011716 Homo sapiens chromosome 8 clone RP11-65D13; complete sequence.,1,147,76694,76626,27.87,CAAGGUGUAGCUUAACAUAAAGCACCCAGUUUACACCUGGGAAAUUUCAACUCAAUUUGACCACCUGAU,AC011716.7/76694-76626,76694-76626,0,68,AC011716.7/76694-76626
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3898,AC011718.2,1,sp|AC011718.2|AC011718 Homo sapiens chromosome 22 clone b2280l11 map 22q11; complete sequence.,0,148,49087,49154,25.21,AAUAUAAUAUAUAAAAUAAUAAUUAAUAUUUUAAAUUAAUUAUUAUUAAUUAAUAUUAAUUAAUAUUA,****    NEW  HIT  #26  ****,,2,0,AC011718.2/49087-49154
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3961,AC011944.12,1,sp|AC011944.12|AC011944 Homo sapiens chromosome 15; clone RP11-16K12; complete sequence.,1,149,165783,165711,68.56,GCCCGGCUAGCUCAGUCGGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG,AC132325.3/91322-91250 AL132989.5/35651-35579 K00289.1/1-73 AC103975.9/187218-187290 AC011944.12/165783-165711,165783-165711,0,72,AC011944.12/165783-165711
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,3969,AC011994.10,1,sp|AC011994.10|AC011994 Homo sapiens BAC clone RP11-50E1 from 2; complete sequence.,1,150,91742,91674,25.74,UCAGUGGUCUAGUGGUUAGGAUUCAGCGCUCCCACCGCCGCAGCCCGGGUUCGAUUCCCGGUCAUGGAA,AC011994.10/91742-91674,91742-91674,0,68,AC011994.10/91742-91674
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4035,AC012156.14,1,sp|AC012156.14|AC012156 Homo sapiens 12p11-37.2-54.4 BAC RP11-433D24 (Rosewell Park Cancer Institute Human Bac Library) complete sequence.,1,151,90287,90219,34.66,GUUCUUAGAGUUGAAGCACAACAAUGAUUUUUGAUGUCAUUAGUUAUGGUUAUAUCCCAUGUAAGAAUU,AC012156.14/90287-90219 AC024940.39/99051-99119,90287-90219,0,68,AC012156.14/90287-90219
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4054,AC012195.9,1,sp|AC012195.9|AC012195 Homo sapiens chromosome 15; clone RP11-44F11; complete sequence.,0,152,16717,16789,30.66,GCACUGCACAGUCAGUCAGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUCAAGCCCCACGUUGGGCG,AC015574.8/140945-141017 AC012195.9/16717-16789,16717-16789,0,72,AC012195.9/16717-16789
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4105,AC012363.6,1,sp|AC012363.6|AC012363 Homo sapiens BAC clone RP11-438O12 from 2; complete sequence.,0,153,59844,59914,33.38,ACUUUUAAAGAAUUAGAGUUGUCUAUUGGUCUUAGGAACCAAAAACAUUGGUGCAACUCCAAAUAAAAGUA,AC012363.6/59844-59914,59844-59914,0,70,AC012363.6/59844-59914
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4107,AC012365.6,1,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2; complete sequence.,0,154,40365,40433,26.47,CAAAAUGUAGCUUAACUCAAAGCAUCCGGCUUAUACCCAGAAUAUUUCAGCAUGACCUGAUCAAUUUGA,****    NEW  HIT  #27  ****,41992-42066 44268-44335 44651-44587 43155-43084 44487-44415,2,0,AC012365.6/40365-40433
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4107,AC012365.6,1,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2; complete sequence.,0,155,41992,42066,53.48,GUUAAGAUGGCAGAGCCCAGCAAUUGCAUAAAUCUUAAAACUUUAUAAUCAGAGGUUCGACUCCUCUUCUUAACA,AC012365.6/41992-42066,41992-42066 44268-44335 44651-44587 43155-43084 44487-44415,0,74,AC012365.6/41992-42066
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4107,AC012365.6,1,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2; complete sequence.,0,156,43018,43086,42.67,AGAAAUAUGUCUGACAAAAGAAUUACUUUGAUAGAGUAAAUAAUAGAGAUUAAAUUCCUCUUAUUUCUA,****    NEW  HIT  #28  ****,41992-42066 44268-44335 44651-44587 43155-43084 44487-44415,1,2,AC012365.6/43018-43086
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4107,AC012365.6,1,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2; complete sequence.,0,157,44268,44335,30.51,AGAAAUUUAGGUUAAAUAAGACCAAGGGCCUUCAAAGCCCUUAGUAAGUAAGUCACACUUAAUUUCUG,AC012365.6/44268-44335,41992-42066 44268-44335 44651-44587 43155-43084 44487-44415,0,67,AC012365.6/44268-44335
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4107,AC012365.6,1,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2; complete sequence.,1,158,44651,44586,39.97,GGUAAAAUGACUGAGUAAGCGUUAGACUGUAAAUCAAAAGAUGGAGGUCAAGGCCUCCUUUUACCA,****    NEW  HIT  #29  ****,41992-42066 44268-44335 44651-44587 43155-43084 44487-44415,1,64,AC012365.6/44651-44586
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4107,AC012365.6,1,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2; complete sequence.,1,159,44487,44415,32.01,UAGGUUGAAGCCAGUUGAUUAGGGUGUUUAGCUGUUAACUAAAUUUUCAUGGGUUUGAAUUCCACCAAUCUAG,AC012365.6/44487-44415,41992-42066 44268-44335 44651-44587 43155-43084 44487-44415,0,72,AC012365.6/44487-44415
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4107,AC012365.6,1,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2; complete sequence.,1,160,43155,43084,44.00,UAGGACAUGGUGUAAUAGGUAGAAUGGAGAAUUUUGAAUUCUCAGGGGUAGGUUCAAUUCCUAUAGUUCUAG,AC012365.6/43155-43084,41992-42066 44268-44335 44651-44587 43155-43084 44487-44415,0,71,AC012365.6/43155-43084
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4167,AC012494.8,1,sp|AC012494.8|AC012494 Homo sapiens BAC clone RP11-312P13 from 2; complete sequence.,1,161,131837,131766,32.01,AUAUAUAUAGUUAUAUAUAAAAAUAUAUAUAUUUUAUAUAUAAAUUAUAUAUUUUAUAUAUAUAUAUAUAUA,****    NEW  HIT  #30  ****,,2,0,AC012494.8/131837-131766
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4201,AC012569.18,1,sp|AC012569.18|AC012569 Homo sapiens chromosome ; clone RP11-8H2; complete sequence.,0,162,61606,61678,52.79,GACGAGCUAGCUCAGUCGGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUUGAGCCCCAUGUUGGGCA,D28126.1/12233-12305 AC012569.18/61606-61678,61606-61678,0,72,AC012569.18/61606-61678
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4228,AC012618.7,1,sp|AC012618.7|AC012618 Homo sapiens chromosome 19 clone CTD-2666L21; complete sequence.,0,163,4620,4693,46.86,GGCUCUGUGGCUUUGUGGGUUAAAGUACUUGUCUGGCAAACAGGAGAUGCUGGAUUUCAAUCCCAGCAGGGCCU,BC006421.1/2283-2356,,0,0,AC012618.7/4620-4693
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4234,AC012626.8,1,sp|AC012626.8|AC012626 Homo sapiens chromosome 16 clone CTD-2118O12; complete sequence.,1,164,53255,53184,73.43,GGCGCGGUGGCCAAGUGGUAAGGCGUCGGUCUCGUAAACCGAAGAUCACGGGUUCGAACCCCGUCCGUGCCU,AC012626.8/53255-53184 AC040173.5/141251-141180,53255-53184,0,71,AC012626.8/53255-53184
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4262,AC013251.19,1,sp|AC013251.19|AC013251 Homo sapiens 3 BAC RP11-38P22 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,165,145347,145419,34.12,UAGAUUGAAGCCAGUUGAUUAGGAUGUUUAGCUGUUAACUAAAUUUUCAUGGAUUUGAAUUCCACCAAUCUAG,AC013251.19/145347-145419,145347-145419,0,72,AC013251.19/145347-145419
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4273,AC013273.9,1,sp|AC013273.9|AC013273 Homo sapiens BAC clone RP11-428D5 from 7; complete sequence.,1,166,1402,1331,72.28,GGGGGUAUAGCUUAGGGGUAGAGCAUUUGACUGCAGAUCAAAAGGUCCCUGGUUCAAAUCCAGGUGCCCCUU,AC013273.9/1402-1331,1402-1331,0,71,AC013273.9/1402-1331
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4274,AC013274.6,1,sp|AC013274.6|AC013274 Homo sapiens BAC clone RP11-449J2 from 2; complete sequence.,0,167,90088,90167,28.88,UGCAUUAUGGUUUAAUAAGUAAAAUAUUUUAUAUAUCACAUAAAAUACUGUUAUUAAAAGUGUGUAUCUUUUUAAUGCUG,****    NEW  HIT  #31  ****,,2,0,AC013274.6/90088-90167
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4311,AC013418.32,1,sp|AC013418.32|AC013418 Homo sapiens 12 BAC RP11-181C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,168,51893,51822,61.26,UCCUCGUUAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCAAUUCCCCGACGGGGAG,AC013418.32/51893-51822,51893-51822 51144-51073,0,71,AC013418.32/51893-51822
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4311,AC013418.32,1,sp|AC013418.32|AC013418 Homo sapiens 12 BAC RP11-181C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,169,51144,51073,67.45,GACCUCGUGGCGCAACGGUAGCGCGUCUGACUCCAGAUCAGAAGGCUGCGUGUUCGAAUCACGUCGGGGUCA,M10264.1/1-72 AC013418.32/51144-51073 K00263.1/1-72 M10671.1/1-72 M24808.1/1-72 X07245.1/169-240,51893-51822 51144-51073,0,71,AC013418.32/51144-51073
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4317,AC013437.8,1,sp|AC013437.8|AC013437 Homo sapiens BAC clone RP11-190J23 from 2; complete sequence.,1,170,73298,73231,27.98,ACUCUUUUAGUAUAAGCAGUACCAUUGAUUUCCAAUCAAUAAGUUUCUAUAAUAUCCAAAAAAGAGUA,****    NEW  HIT  #32  ****,71159-71091 72884-72818 65984-65914,2,0,AC013437.8/73298-73231
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4317,AC013437.8,1,sp|AC013437.8|AC013437 Homo sapiens BAC clone RP11-190J23 from 2; complete sequence.,1,171,72884,72818,41.17,UGGUAAAUAGUUUAAAUUAAAAUGAAUGAUUUUGACUCAUUAGAUUAUGAUAGACCAUAUUUACCAA,AC013437.8/72884-72818,71159-71091 72884-72818 65984-65914,0,66,AC013437.8/72884-72818
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4317,AC013437.8,1,sp|AC013437.8|AC013437 Homo sapiens BAC clone RP11-190J23 from 2; complete sequence.,1,172,71159,71091,38.54,GUAAAUAUAGUUUAACCAAAACAUUAGAUUGUGAAUCUAAUAAUAGAAGCCUGUAACUUCUUAUCUACC,AC013437.8/71159-71091,71159-71091 72884-72818 65984-65914,0,68,AC013437.8/71159-71091
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4317,AC013437.8,1,sp|AC013437.8|AC013437 Homo sapiens BAC clone RP11-190J23 from 2; complete sequence.,1,173,65984,65914,37.09,GUUAAUGUAGCUUAAUUAUUCCAAGCAAGACACUGAAAAUGUCUAGAUGGGUCUGCACGACCCCAUAAACA,AC013437.8/65984-65914,71159-71091 72884-72818 65984-65914,0,70,AC013437.8/65984-65914
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4345,AC013472.8,1,sp|AC013472.8|AC013472 Homo sapiens BAC clone RP11-503P10 from 2; complete sequence.,0,174,138963,139051,46.38,CCUUCGAUAGCUCAGUUGGUAGAGCGGAGGACUGUAGUGGAUAGGGCGUGGCAAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGA,AC013472.8/138963-139051,138963-139051 139395-139467,0,88,AC013472.8/138963-139051
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4345,AC013472.8,1,sp|AC013472.8|AC013472 Homo sapiens BAC clone RP11-503P10 from 2; complete sequence.,0,175,139395,139467,61.35,GGGGGAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCA,AC013472.8/139395-139467 AC109606.11/112333-112405 AC090195.5/10004-10076 AC084082.5/11251-11179,138963-139051 139395-139467,0,72,AC013472.8/139395-139467
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4432,AC015574.8,1,sp|AC015574.8|AC015574 Homo sapiens; clone RP11-44B21; complete sequence.,0,176,140945,141017,30.66,GCACUGCACAGUCAGUCAGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUCAAGCCCCACGUUGGGCG,AC015574.8/140945-141017 AC012195.9/16717-16789,140945-141017,0,72,AC015574.8/140945-141017
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4458,AC015726.8,1,sp|AC015726.8|AC015726 Homo sapiens chromosome ; clone RP11-78O7; complete sequence.,0,177,90767,90837,61.23,GCAUUGGUGGUUCAAUGGUAGAAUUCUCGCCUCCCACGCAGGAGACCCAGGUUCGAUUCCUGGCCAAUGCA,AC015726.8/90767-90837,90767-90837,0,70,AC015726.8/90767-90837
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4522,AC015974.10,1,sp|AC015974.10|AC015974 Homo sapiens BAC clone RP11-467A18 from 2; complete sequence.,1,178,15431,15365,26.56,AUAUAUAUAAUAUAUAUUAUAUAUAUAUUUUAUAUAUAUAAUAUAUAUUAUAUAUAUGUUAUAUAUU,****    NEW  HIT  #33  ****,,2,0,AC015974.10/15431-15365
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4636,AC016582.9,1,sp|AC016582.9|AC016582 Homo sapiens chromosome 19 clone CTD-2554C21; complete sequence.,0,179,142276,142344,29.18,AUAUAUAUAAUAUAUAUAUAAUAUAUAUAUAUUAUAUAUAUAAUAUAUAUUAUAUAUAUAUUAUAUAUA,****    NEW  HIT  #34  ****,,2,0,AC016582.9/142276-142344
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4636,AC016582.9,1,sp|AC016582.9|AC016582 Homo sapiens chromosome 19 clone CTD-2554C21; complete sequence.,1,180,142325,142259,26.00,AUAUAUAUUAUAUAUAUAAUAUAUAUAUAUUAUAUAUAUAUUAUAUAUAUUAUAUAUAUUAUAUAUA,****    NEW  HIT  #35  ****,,2,0,AC016582.9/142325-142259
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4712,AC016700.8,1,sp|AC016700.8|AC016700 Homo sapiens BAC clone RP11-175A7 from 2; complete sequence.,1,181,165408,165338,63.84,GCGCCGCUGGUGUAGUGGUAUCAUGCAAGAUUCCCAUUCUUGCGACCCGGGUUCGAUUCCCGGGCGGCGCA,AC016700.8/165408-165338 AE006464.1/109042-108972 AL022341.6/553-483 S70114.1/359-429 K00209.1/1-71,165408-165338,0,70,AC016700.8/165408-165338
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4797,AC016907.6,1,sp|AC016907.6|AC016907 Homo sapiens BAC clone RP11-439P4 from 2; complete sequence.,0,182,54136,54208,44.34,GGGCCAGUGGCUCAAUGGAUAAUGCGUCUGACUAAGAAUCAGAAGAUUCCAGCCUUGACUCCUGGCUGGCUCA,AC016907.6/54136-54208,54136-54208,0,72,AC016907.6/54136-54208
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4837,AC016987.4,1,sp|AC016987.4|AC016987 Homo sapiens chromosome 15; clone RP11-133L19; complete sequence.,1,183,152810,152743,25.75,GCUUAUAAAAUAUAGAAGGGUAUAUGUGAUUUUUAAAUACAACUUUGAAAGCAACUUUUCUUUAAGCA,****    NEW  HIT  #36  ****,,2,0,AC016987.4/152810-152743
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4960,AC018517.7,1,sp|AC018517.7|AC018517 Homo sapiens; clone RP11-115N12; complete sequence.,0,184,159699,159771,32.11,AUAUAUAUAAUAUAUAUAUUAUAUAUAUAUAUUUUAUAUAUAUAAUAUAUAUAUUAUAUAUAUAUUUUAUAUA,****    NEW  HIT  #37  ****,,2,0,AC018517.7/159699-159771
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,4995,AC018638.5,1,sp|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B21; complete sequence.,1,185,4694,4623,56.24,GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC,M15274.1/653-582 AF091512.1/54947-55018 AC018638.5/4694-4623 AJ003147.1/148863-148934 Y00460.1/2100-2171 AL714025.12/40990-40919 AL163636.7/41481-41410 AC024952.4/67907-67978 AL163195.5/25527-25598 M15347.1/651-580 M26848.1/317-388 AJ003147.1/141935-141864 AP000785.4/75347-75418 AL163195.5/21462-21533 AL356532.9/16462-16391 X57444.1/1-72 AF091512.1/47958-47887 AL121936.17/92635-92706 AC114481.2/80764-80693 K01635.1/207-278 Z62912.1/18-89 BX088547.12/121690-121761 AL163636.7/45554-45483 X56627.1/1-72 X55888.1/277-348,4694-4623,0,71,AC018638.5/4694-4623
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5020,AC018683.4,1,sp|AC018683.4|AC018683 Homo sapiens BAC clone RP11-423P14 from 4; complete sequence.,0,186,66468,66531,29.31,UUUAAAAUAUUAAAUAUAUUAAAAAUGUUUUUAAAAUAUUAAAUAUAUUAAAAUAUUUUUAAAU,****    NEW  HIT  #38  ****,,2,0,AC018683.4/66468-66531
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5034,AC018698.5,1,sp|AC018698.5|AC018698 Homo sapiens BAC clone RP11-579C11 from 12; complete sequence.,0,187,178970,179041,26.58,UAGGAUAUGAUGUAUUAGGUAGCAUGGAGAAUUUUUGAUUCUCAGGAAUACACUCAACUCCUAUAAUUCUAG,****    NEW  HIT  #39  ****,179107-179039,1,2,AC018698.5/178970-179041
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5034,AC018698.5,1,sp|AC018698.5|AC018698 Homo sapiens BAC clone RP11-579C11 from 12; complete sequence.,1,188,179107,179039,48.62,AGAAAUAUGUCUGAUAAAAGAGUUACUCUGAUAGAGUAAAUAAUAGAGGUUUAAACCCUCUUAUUUCUA,AC018698.5/179107-179039,179107-179039,0,68,AC018698.5/179107-179039
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5060,AC018753.5,1,sp|AC018753.5|AC018753 Homo sapiens chromosome 5 clone CTC-376I20; complete sequence.,1,189,76254,76184,25.57,GUAUGAAUAGUAUAAUUUUGAAUAUACUACAUUUUAGGUUAGAGGCCUAAGAGCUAGUCUUAGUUUAUUCU,****    NEW  HIT (duplicate of new hit #11)   ****,,2,0,AC018753.5/76254-76184
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5156,AC018992.6,1,sp|AC018992.6|AC018992 Homo sapiens chromosome 8; clone RP11-468O2; complete sequence.,0,190,149786,149858,69.86,GCCUCGUUAGCGCAGUAGGUAGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAUCCUCACACGGGGCA,AC068228.8/84896-84824 AC113292.6/1843-1771 AC104430.3/23005-22933 K00300.1/1-73 X68632.1/6-78 AC018992.6/149786-149858 AF254136.3/147797-147725 X04547.1/5-77,149786-149858,0,72,AC018992.6/149786-149858
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5297,AC020603.4,1,sp|AC020603.4|AC020603 Homo sapiens BAC clone RP11-534K13 from 8; complete sequence.,1,191,51651,51583,26.47,UAAUAUAUAAUUUAAAUAUAUAAUAUAUAUUUGUAAAUAUAUAUUAUAUAUUUAAAUUAUAUAUAUUAU,****    NEW  HIT  #41  ****,,2,0,AC020603.4/51651-51583
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5471,AC021080.4,1,sp|AC021080.4|AC021080 Homo sapiens chromosome 5 clone CTC-203K17; complete sequence.,1,192,79998,79930,38.29,GUUUAUGUAGCUUAAUUAUUAAAAGCAAGACACUGAAAAUGUCUAGACGGACUUAUUACCCCAUAAACA,AC021080.4/79998-79930 AC026409.4/83611-83679 AC008580.7/7078-7146 AC008512.8/95691-95623,79998-79930,0,68,AC021080.4/79998-79930
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5472,AC021081.5,1,sp|AC021081.5|AC021081 Homo sapiens chromosome 5 clone CTC-213A3; complete sequence.,0,193,40018,40089,45.01,UCCUCAUCAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACUGGGGUUCGAUUCCCUGAGGAGGAG,AC021081.5/40018-40089 AC010317.5/109122-109193,40018-40089,0,71,AC021081.5/40018-40089
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5541,AC021451.8,1,sp|AC021451.8|AC021451 Homo sapiens chromosome 8; clone RP11-101E19; complete sequence.,0,194,130055,130126,31.14,UACGACAUGGUGUAAUAAGUAGCACAGAGAAUUUUGGGUUCUCAGGGGUAGGUUCAAUUCCCAUAGUUCUAG,AC091163.5/42150-42221 AC021451.8/130055-130126,130055-130126 130580-130506,0,71,AC021451.8/130055-130126
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5541,AC021451.8,1,sp|AC021451.8|AC021451 Homo sapiens chromosome 8; clone RP11-101E19; complete sequence.,1,195,130580,130506,44.61,GUUAAGAUGGCAUAGCCCAGCAAUUGCAUAAAACUUAAGACUUUAUAAUUAGAAGUUCAACACCUCUUCUUAACA,AC021451.8/130580-130506 AC091163.5/42675-42601,130055-130126 130580-130506,0,74,AC021451.8/130580-130506
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5541,AC021451.8,1,sp|AC021451.8|AC021451 Homo sapiens chromosome 8; clone RP11-101E19; complete sequence.,1,196,130192,130124,26.31,GGAAAUAUGUUCAACAAAAGAAUUACUUUGAUAGACUAAACAAUGGAGGUUAAAAUCCUCUUAUUUCUA,****    NEW  HIT  #42  ****,130055-130126 130580-130506,1,2,AC021451.8/130192-130124
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5544,AC021483.11,1,sp|AC021483.11|AC021483 Homo sapiens; clone RP11-38G5; complete sequence.,0,197,36207,36279,71.98,GGGGGUAUAGCUCAGUGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU,AC021483.11/36207-36279 AC026826.7/118544-118616,36207-36279,0,72,AC021483.11/36207-36279
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5581,AC021648.25,1,sp|AC021648.25|AC021648 Homo sapiens 12 BAC RP11-255I14 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,1,198,58089,58016,33.92,GGUUCCAUGGUGUAAUGGUAAGCACCCUGGACUCUGAAUCCAGCAACCAGAGUUCCAGUCUCAGCGUGGACCUU,AC021648.25/58089-58016,58089-58016,0,73,AC021648.25/58089-58016
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5586,AC021657.19,1,sp|AC021657.19|AC021657 Homo sapiens 3 BAC RP11-490B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,199,150786,150857,27.01,AUAUAUAUAUAUUUGGAUUAUAUAUAUAUAUUUGGAUUAUAUAUAUAUAUAUUUGGAUUAUAUAUAUAUAUU,****    NEW  HIT  #43  ****,,2,0,AC021657.19/150786-150857
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5604,AC021749.6,1,sp|AC021749.6|AC021749 Homo sapiens chromosome 11; clone RP11-810F22; complete sequence.,0,200,23730,23797,46.27,AAGAUAUUAGUAAAAUUAUUAUAUAACUUUGUCAAAGUUAAUUUAUAGGUUAAAUCCUGUAUGUCUUA,AC021749.6/23730-23797 AC027806.8/43402-43335,23730-23797 23726-23658,0,67,AC021749.6/23730-23797
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5604,AC021749.6,1,sp|AC021749.6|AC021749 Homo sapiens chromosome 11; clone RP11-810F22; complete sequence.,1,201,23726,23658,34.43,GAGAGAGUCAUAGAGGGUAUGGGAUUGGCUUGAAACCAGUUUCUGGAGGUUUGAUUCCUUCCUUUCUCG,AC021749.6/23726-23658 AC027806.8/43406-43474,23730-23797 23726-23658,0,68,AC021749.6/23726-23658
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5608,AC021755.9,1,sp|AC021755.9|AC021755 Homo sapiens chromosome 15 clone RP11-521C20 map 15q15; complete sequence.,1,202,152334,152264,30.87,ACUUUUAGAGGAUGAGAGUUAUCCAUUGGUCUUAGGAACCAAAAAUAUUUGUGCAAUUCCAAAUAAAAGUA,AC021755.9/152334-152264 AC025429.6/53155-53085,152334-152264 152462-152394,0,70,AC021755.9/152334-152264
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5608,AC021755.9,1,sp|AC021755.9|AC021755 Homo sapiens chromosome 15 clone RP11-521C20 map 15q15; complete sequence.,1,203,152462,152394,32.08,GUAAAUAUAGUUUAAUCAAAACGUUAGAUUGUGGGUCUAAUAAUAGAAGCCUUCAACUUCUUAUUUCCC,AC021755.9/152462-152394 AC025429.6/53283-53215,152334-152264 152462-152394,0,68,AC021755.9/152462-152394
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5640,AC021914.7,1,sp|AC021914.7|AC021914 Homo sapiens chromosome 11; clone RP11-68C8; complete sequence.,0,204,43202,43272,32.84,GUUUAUGUAGCUUACUUCCCCAAAGCAAUACACUGAAAAUGUUUCGACGGGCUCAUAUCACCCCAUAAACA,AC021914.7/43202-43272,43202-43272 44225-44293,0,70,AC021914.7/43202-43272
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5640,AC021914.7,1,sp|AC021914.7|AC021914 Homo sapiens chromosome 11; clone RP11-68C8; complete sequence.,0,205,44225,44293,33.91,CAGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAACUCAACUUGACCGCUCUGA,AB064495.1/100-168 AB050154.1/96-164 AB064492.1/100-168 AB050153.1/99-167 AB050155.1/92-160 D38114.1/1021-1089 AB050152.1/89-157 AC021914.7/44225-44293 AB064491.1/100-168 AB064494.1/121-189 AB064493.1/100-168 AB064490.1/94-162 AF420034.1/185-253 X93347.1/1022-1090,43202-43272 44225-44293,0,68,AC021914.7/44225-44293
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5648,AC021998.4,1,sp|AC021998.4|AC021998 Homo sapiens chromosome 11 clone RP11-116N3 map 11; complete sequence.,0,206,8858,8924,25.07,AUAUAUAUAAUAUAUAUAUUAUAUAUAUAUUAUAUAUAUUAUAUAUAUAUUAUAUAUAUUAUAUAUA,****    NEW  HIT  #44  ****,,2,0,AC021998.4/8858-8924
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5655,AC022014.3,1,sp|AC022014.3|AC022014 Homo sapiens chromosome 11 clone RP11-91E22 map 11q; complete sequence.,0,207,135978,136044,25.07,AUAUAUAUAAUAUAUAUAUUAUAUAUAUAUUAUAUAUAUUAUAUAUAUAUUAUAUAUAUUAUAUAUA,****    NEW  HIT (duplicate of new hit #44)   ****,,2,0,AC022014.3/135978-136044
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5726,AC022148.6,1,sp|AC022148.6|AC022148 Homo sapiens chromosome 19 clone CTD-3064H18; complete sequence.,1,208,92643,92574,32.30,GCUAAUGUAGCUUAAUUCACAAAGCAAGGCACUGACAAUGCCUAAAUGAGUUCAUAUAACUCUAUAAACA,AC022148.6/92643-92574,92643-92574,0,69,AC022148.6/92643-92574
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5813,AC022405.5,1,sp|AC022405.5|AC022405 Homo sapiens chromosome 15 clone CTD-2339L15 map 15q14; complete sequence.,1,209,3908,3827,67.90,GACGAGGUGGCCGAGUGGUUAAGGCGAUGGACUGCUAAUCCAUUGUGCUCUGCACGCGUGGGUUCGAAUCCCAUCCUCGUCG,AC106019.4/24546-24627 AL592149.8/2472-2553 AC129492.6/181742-181823 AL645902.6/78364-78283 AC022405.5/3908-3827 AL590614.8/68123-68042 AL671879.2/23905-23824 AL049543.17/8193-8274 AL807389.7/15034-14953 K00371.1/1-82,3908-3827,0,81,AC022405.5/3908-3827
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5950,AC022861.4,1,sp|AC022861.4|AC022861 Homo sapiens chromosome 8; clone RP11-343B22; complete sequence.,0,210,127120,127190,32.96,ACUUUUAAAGGAUGAGAGUCAUCCGUUGGUCUUAAGAACCAAAAACACUGGUGCAACUCCAAAUAAAAGUA,AC022861.4/127120-127190,126992-127060 127120-127190,0,70,AC022861.4/127120-127190
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,5950,AC022861.4,1,sp|AC022861.4|AC022861 Homo sapiens chromosome 8; clone RP11-343B22; complete sequence.,0,211,126992,127060,30.67,GUAGCUGUAGUUUAAGCAAAACAUUAGAUUGUGGAUCUAACAAUAGAAGCCUUCAAUUUCUUAUCUACC,AC022861.4/126992-127060,126992-127060 127120-127190,0,68,AC022861.4/126992-127060
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,6001,AC023122.9,1,sp|AC023122.9|AC023122 Homo sapiens BAC clone RP11-297L21 from 3; complete sequence.,1,212,50629,50561,29.68,AUAUAUAUAAUAUAAUGUAAUAUAAUUAUAUUAUACAUAAUAUUAUAUAUAAUUAUAUUAUUAUAUAUA,****    NEW  HIT  #46  ****,,2,0,AC023122.9/50629-50561
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,6061,AC023385.10,1,sp|AC023385.10|AC023385 Homo sapiens chromosome 8; clone RP11-675P19; complete sequence.,1,213,33744,33674,44.40,GGGGGUAGAAUUCGGGGUAGAACAUUUGACUGCAGAUCAAGAGGUCCCCGCUUCGAAUCUGGGUACCCCCU,AC023385.10/33744-33674 AC034111.6/3855-3925,33744-33674,0,70,AC023385.10/33744-33674
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,6065,AC023396.4,1,sp|AC023396.4|AC023396 Homo sapiens chromosome 8; clone RP11-545M21; complete sequence.,1,214,19845,19773,26.67,UUAUAUAUCAUAGAAUUGGCAAUAUAUAAUAUUAAAUAUAUUUAUAUUAUUAUAUAAUAUAUAAUUAUAUAUA,****    NEW  HIT  #47  ****,,2,0,AC023396.4/19845-19773
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,6072,AC023425.20,1,sp|AC023425.20|AC023425 Homo sapiens 12 BAC RP11-350G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence.,0,215,121962,122030,36.02,AAGGAGUUAGCUCAAUUAAAGUGAUUGAUUUGCAUUCAGUUGAUGUAAGAUAAGAUCUUGCAGUCCUUA,AC023425.20/121962-122030,121962-122030,0,68,AC023425.20/121962-122030
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,6092,AC023492.5,1,sp|AC023492.5|AC023492 Homo sapiens BAC clone RP11-24M5 from 4; complete sequence.,1,216,43040,42973,25.02,AUAUAUUUAAUAUAUAAUAUAUUAUAUAUAAAAUAUAUAUAUUAUAUAUAUAAAAUAUAUAAUAUAUA,****    NEW  HIT  #48  ****,,2,0,AC023492.5/43040-42973
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,6168,AC023916.10,1,sp|AC023916.10|AC023916 Homo sapiens chromosome ; clone RP11-12L20; complete sequence.,0,217,64744,64815,30.26,AUAUAUUUAAUUUAUAUAUAUAAAUAUAUAUUUAAAAUUAUAUAUUUAUAUAUUUAAAAUAUAUAAUAUAUA,****    NEW  HIT  #49  ****,,2,0,AC023916.10/64744-64815
./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec ,Rfam/cm/RF00005.cm (global),/projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz,6248,AC024248.7,1,sp|AC024248.7|AC024248 Homo sapiens BAC clone RP11-659O3 from 4; complete sequence.,0,218,60974,61044,30.04,GUUAAUGUAGCUUAAUUAUUCAAAGCAAGACACUGAAAAUGUCUAGAUGGAUCCGCACAACCCUAUAAACA,AC024248.7/60974-61044,60974-61044 62010-62078,0,70,AC024248.7/60974-61044
./cmzasha --no-stderr --filter 100 24.995