Params: ./cmzasha --no-stderr --filter 100 24.995 Rfam/cm/RF00005.cm @/projects/bio/zasha/seqs/embl_release76/hum.list 1 specfile data/RF00005.filterspec Build: release Host: recycle.cs.washington.edu pid: 27305 ----specfile: 2struct-str data/TryAllCm_5.0/RF00005_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-nuc,17,l-A_-CG-U,16,l-AG_-C-U,34,r-A_-CG-U,33,r-AG_-CU,32,r-AG_-CU,53,r-AGU-C-_,52,l-CGU-A_,51,r-AG_-CU 2struct-str data/TryAllCm_5.0/RF00005_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-nuc,17,l-A_-CG-U,16,l-AG_-C-U,15,l-CU_-AG,34,r-C_-A-G-U,33,r-AG_-CU,32,r-AG_-CU,31,l-AG_-CU,53,r-AGU-C-_,52,l-CU_-A-G,51,r-AG_-CU,50,l-AG_-CU 2struct-str data/TryAllCm_5.0/RF00005_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub,30,40/sub,49,40 2struct-str data/TryAllCm_5.0/RF00005_forwardinf_hmmtype1_Saureus_0MM.bin 1/sub,30,40/sub,49,40/sub,15,40 Exploded HMM has 1593 states ----hmm-from-cmFileName: Rfam/cm/RF00005.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00005.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00005.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,17,l-A_-CG-U/remember-nuc,16,l-AG_-C-U/remember-nuc,34,r-A_-CG-U/remember-nuc,33,r-AG_-CU/remember-nuc,32,r-AG_-CU/remember-nuc,53,r-AGU-C-_/remember-nuc,52,l-CGU-A_/remember-nuc,51,r-AG_-CU Exploded HMM has 3838 states ----hmm-from-cmFileName: Rfam/cm/RF00005.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00005.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00005.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-nuc,17,l-A_-CG-U/remember-nuc,16,l-AG_-C-U/remember-nuc,15,l-CU_-AG/remember-nuc,34,r-C_-A-G-U/remember-nuc,33,r-AG_-CU/remember-nuc,32,r-AG_-CU/remember-nuc,31,l-AG_-CU/remember-nuc,53,r-AGU-C-_/remember-nuc,52,l-CU_-A-G/remember-nuc,51,r-AG_-CU/remember-nuc,50,l-AG_-CU ----hmm-from-cmFileName: Rfam/cm/RF00005.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00005.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00005.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,30,40/sub,49,40 ----hmm-from-cmFileName: Rfam/cm/RF00005.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00005.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00005.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,30,40/sub,49,40/sub,15,40 ----cmFile: Rfam/cm/RF00005.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #2165,sp|AB020868.1|AB020868 Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular colorectal and non-small cell lung cancer , segment 11/11. ----isReversed: 1 ----hitSequence: UGGUAAUGAGUUUAAACCAAAACAAAUGAUUUUGACUCAUUAAAUUAUGAUUACUCAUAAUUACUAA hit 0 : 141368 141302 (rev) 31.49 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 : G:A:: AG:U:A+ A:A:CA:::GA+UUU A UC:::A++ +:::G:UU 12105 UGGUAAUGAGUUUAA--ACCAAAACAAAUGAUUUUGACUCAUUAAA-UUAUGAUUAC--- 12158 >>>>>))))))): 61 CCcgccaucccCA 73 :C:::::U:C :A 12159 UCAUAAUUACUAA 12171 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #4501,sp|AB045364.1|AB045364 Homo sapiens genomic DNA, chromosome 1q22-q23, clone:683m11. ----isReversed: 1 ----hitSequence: GUCUCUGUGGCGCAAUGGACGAGCGCGCUGGACUUCUAAUCCAGAGGUUCCGGGUUCGAGUCCCGGCAGAGAUG hit 1 : 88628 88555 (rev) 71.88 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgA 58 :::::UGU+GC:CA+U GG AG:GC+::GGACUU UAAUCC::AGGU+:CGGGUUCGA 49263 GUCUCUGUGGCGCAAU-GGAcgAGCGCGCUGGACUUCUAAUCCAGAGGUUCCGGGUUCGA 49321 __>>>>>))))))): 59 aUCCcgccaucccCA 73 UCCCG:CA::::: 49322 GUCCCGGCAGAGAUG 49336 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9564,sp|AC002565.1|AC002565 Human Chromosome 16 BAC clone CIT987SK-A-598D4, complete sequence. ----isReversed: 1 ----hitSequence: UAAUAUAUAAUAAAUAUAAUAUAUAUAUUUUUAAAAUAUAAUAUAUUUUUAAUAAUAUAUUUUAAUUUAUUUAAAUAUUUUAAAUAUAUUUAUUUUAA hit 2 : 84792 84695 (rev) 26.26 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,............... 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaG............... 45 ::: AU:UA::::A U A::::AU::::+UUU+AA::::AA 19120 UAAUAUAUAAUAAAUAU---AAUAUAUAUAUUUUUAAAAUAUAA-uauauuuuuaauaau 19175 ..............,,,<<<<<_______>>>>>))))))): 46 ..............gUcgcgGGUUCgAaUCCcgccaucccCA 73 U :::::UU +AAU::::::AU :::A 19176 auauuuuaauuuauUUAAAUAUUUUAAAUAUAUUUAUUUUAA 19217 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9645,sp|AC003101.1|AC003101 Homo sapiens chromosome 17, clone HRPC41C23, complete sequence. ----isReversed: 0 ----hitSequence: GGCGCGGUGGCCAAGUGGUAAGGCGUCGGUCUCGUAAACCGAAGAUCGCGGGUUCGAACCCCGUCCGUGCCU hit 3 : 140108 140179 (fwd) 72.15 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GG: ::GU+GC::AGU GGUA::GC+UCGG:CU UAA:CCGAAG+UC:CGGGUUCGAA 140108 GGCGCGGUGGCCAAGU-GGUAAGGCGUCGGUCUCGUAAACCGAAGAUCGCGGGUUCGAAC 140166 >>>>>))))))): 61 CCcgccaucccCA 73 CCCG:C:: :CC 140167 CCCGUCCGUGCCU 140179 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9666,sp|AC003668.2|AC003668 Homo sapiens X PAC RP1-233D13 (Roswell Park Cancer Institute Human PAC Library ) complete sequence. ----isReversed: 0 ----hitSequence: AAGAGCUUAGCUUAAUUAAAGUGGUUGAUUUGUGUUCAAUUGAUGCAGAAUAGAGUCUUGCAGUCCUUA hit 4 : 138589 138657 (fwd) 36.87 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::G ::UA:CU:A+UU A:AG:+:::GA+UU U UC:::+G+ +GC: : U GA U 138589 AAGAGCUUAGCUUAAUU---AAAGUGGUUGAUUUGUGUUCAAUUGA-UGCAGAAUAGAGU 138644 >>>>>))))))): 61 CCcgccaucccCA 73 : :GC:: C::A 138645 CUUGCAGUCCUUA 138657 ----endhit ----hitSequence: GAGAUUGAGACCAGUUGAUUAAGGUGUUUAGCUGUUAACUAAAUUUUUGUGGGUUUGAAUUCCAUCAAUCUAG hit 5 : 138515 138587 (fwd) 36.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 :G::UG +:C:: U G U A::G:+U::::CU+UUAA::::A+ U+::GG UU GAA 138515 GAGAUUGAGACCAGUU-GAUuAAGGUGUUUAGCUGUUAACUAAAUUUUUGUGGGUUUGAA 138573 _>>>>>))))))): 60 UCCcgccaucccCA 73 U CC::CA::C: 138574 UUCCAUCAAUCUAG 138587 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9758,sp|AC004034.2|AC004034 Homo sapiens chromosome 16 clone LA16c-321D4, complete sequence. ----isReversed: 1 ----hitSequence: CCCCGGCUGGCUCAGUCAGUAGAUCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCACGCCCCACACUGGGCG hit 6 : 19880 19808 (rev) 39.34 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::: : U+G UCAGU+ GUAGA CAU::GACU UUAAUC::A GGUCG:GGGUUC+ 17839 CCCCGGCUGGCUCAGUCAGUAGAUCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCACGC 17898 >>>>>))))))): 61 CCcgccaucccCA 73 CCC:C : ::: 17899 CCCACACUGGGCG 17911 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9759,sp|AC004035.1|AC004035 Homo sapiens chromosome 16, cosmid clone 378E2 (LANL), complete sequence. ----isReversed: 0 ----hitSequence: UAGGACUUGGUGUAAUGGGUAGCACAGAGAAUUUUGGAUUCUCAGGGGUGGGUUCAAUUCCUUUCGUCCUAG hit 7 : 8085 8156 (fwd) 42.91 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::GGA: U+G:::A+U GGUA:::CA::G:A+UUU AU:C::AGG : GGUUC+A+U 8085 UAGGACUUGGUGUAAUGGGUAGCACAGAGAAUUUUGGAUUCUCAGG-GGUGGGUUCAAUU 8143 >>>>>))))))): 61 CCcgccaucccCA 73 CC : :UCC:: 8144 CCUUUCGUCCUAG 8156 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9759,sp|AC004035.1|AC004035 Homo sapiens chromosome 16, cosmid clone 378E2 (LANL), complete sequence. ----isReversed: 1 ----hitSequence: UUUAAGAUGGCAGACCCCGGCAAUUACCUAAGACUUAAAACUUUAAAAUCAGAGGUUCAACUCCUCUUCUUAACA hit 8 : 9254 9180 (rev) 31.84 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgUU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgA 58 :::A::U+G : A + GG A : C U:: CUU++AA ::AA++UC:::GGUUC+A 26633 UUUAAGAUGGCAGACCCcGGCaAUUACCUAAGACUUAAAACUUUAAAAUCAGAGGUUCAA 26692 __>>>>>))))))): 59 aUCCcgccaucccCA 73 UCC:::::U::: A 26693 CUCCUCUUCUUAACA 26707 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9759,sp|AC004035.1|AC004035 Homo sapiens chromosome 16, cosmid clone 378E2 (LANL), complete sequence. ----isReversed: 1 ----hitSequence: UCGAUAUUAGUAAAAUCAUUACAUAACUUUGUCAAAGUUAAGAUAUAGGAUAAACCCUGUAUGUCUUA hit 9 : 5923 5856 (rev) 35.04 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G: ::UAG:: A+U+ A ::CAU::::+U+U AA::::AAG+ +: :GG U +A 29964 UCGAUAUUAGUAAAAUC---AUUACAUAACUUUGUCAAAGUUAAGA-UAUAGGAUAAAC- 30018 >>>>>))))))): 61 CCcgccaucccCA 73 CC: ::: :C A 30019 CCUGUAUGUCUUA 30031 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9838,sp|AC004142.2|AC004142 Homo sapiens BAC clone CTB-118D7 from 7, complete sequence. ----isReversed: 0 ----hitSequence: UAGAUUGAAGCUAGUUGAUUAGGAUAUUUAGCUGUUAACUAAAUUUUUGUGGGUUUGCGUCCCAUUAAUCUAG hit 10 : 5636 5708 (fwd) 33.90 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 ::G::U: A: ::AGUUG U A:: :AU::::CU+UUAA::::A+ U+::GGGUU G 5636 UAGAUUGAAG-CUAGUUGAUuAGGAUAUUUAGCUGUUAACUAAAUUUUUGUGGGUUUGCG 5694 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCCC:::A::C:: 5695 UCCCAUUAAUCUAG 5708 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9933,sp|AC004381.1|AC004381 Homo sapiens Chromosome 16 BAC clone CIT987SK-44M2, complete sequence. ----isReversed: 1 ----hitSequence: ACUUUUAAAGGAUAAGAGUCAUCAGUUGGUCUUAGGAACCAAAAACAUUGUUGCAACUCCAAAUAAAAGUA hit 11 : 78710 78640 (rev) 29.85 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::::U: A :::A+ GU ::: +U:GG:CUU+ A:CC:AA++ C ::G:U C+A U 134832 ACUUUUAAAGGAUAAG-AGUCAUCAGUUGGUCUUAGGAACCAAAAA-CAUUGUUGCAACU 134889 >>>>>))))))): 61 CCcgccaucccCA 73 :C:: :A:::::A 134890 CCAAAUAAAAGUA 134902 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9947,sp|AC004408.1|AC004408 Homo sapiens chromosome 17, clone hRPC.906_A_24, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU hit 12 : 53567 53496 (rev) 76.55 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAGU GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 59686 GGGGGUAUAGCUCAGU-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAU 59744 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 59745 CCGGGUGCCCCCU 59757 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9947,sp|AC004408.1|AC004408 Homo sapiens chromosome 17, clone hRPC.906_A_24, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU hit 13 : 52810 52739 (rev) 76.55 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAGU GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 60443 GGGGGUAUAGCUCAGU-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAU 60501 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 60502 CCGGGUGCCCCCU 60514 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum01.dat.fasta.gz ----sequence: #9956,sp|AC004448.3|AC004448 Homo sapiens chromosome 17, clone CTB-187M2, complete sequence. ----isReversed: 1 ----hitSequence: GACCUCGUGGCGCAAUGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAGUCACGUCGGGGUCA hit 14 : 8714 8643 (rev) 71.04 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G::: :GU+GC:CA+U GGUAG:GC+UC:GACU + AUC:GAAGGU+:CG:GUUC+A U 140443 GACCUCGUGGCGCAAU-GGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAGU 140501 >>>>>))))))): 61 CCcgccaucccCA 73 C:CG:C: :::CA 140502 CACGUCGGGGUCA 140514 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #102,sp|AC004655.1|AC004655 Homo sapiens Xp22-140-141 BAC GSHB-128G5 (Genome Systems Human BAC library) complete sequence. ----isReversed: 1 ----hitSequence: GUGGGUAUAGCUCAGAGGUAGAGCAUUCAACUGCAGAUCGAAGUGGCUGUACCAUUUUGCAUUCCCACC hit 15 : 5664 5596 (rev) 29.90 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G:GG: :UAGCUCAG GGUAGAGCAU:: ACU+ + AU ::A G C:: : C+ +U 129266 GUGGGUAUAGCUCAGA-GGUAGAGCAUUCAACUGCAGAUCGAAGUGGCUGUA--CCAUUU 129322 >>>>>))))))): 61 CCcgccaucccCA 73 : ::: :CC:C 129323 -UGCAUUCCCACC 129334 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #108,sp|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence. ----isReversed: 1 ----hitSequence: GAUUUUAUGGUGUAAUGGUGAGCACUCUGGACUUGGAAUCCAGAAUUAACAAACAGAACAUCCUGCAAUUUUAUUAAGAGCA hit 16 : 69036 68955 (rev) 28.22 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,............., 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaG.............g 46 G : :U:U+G:::A+U GGU A:::C ::GGACUU AAUCC::A + 103037 GAUUUUAUGGUGUAAU-GGUgAGCACUCUGGACUUGGAAUCCAGA-auuaacaaacagaA 103094 ,,<<<<<_______>>>>>))))))): 47 UcgcgGGUUCgAaUCCcgccaucccCA 73 C:: U C+A+U :::A: : CA 103095 -CAUCC-UGCAAUU-UUAUUAAGAGCA 103118 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #287,sp|AC004897.1|AC004897 Homo sapiens PAC clone RP4-811N16 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCACAGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCUGGGUGCCCCCU hit 17 : 10652 10723 (fwd) 64.87 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCA GGUAGAGCA ::GACU+ + AUC:: AGGUC:C: GUUC+AAU 10652 GGGGGUAUAGCUCACA-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAU 10710 >>>>>))))))): 61 CCcgccaucccCA 73 C :G::+:CCCC 10711 CUGGGUGCCCCCU 10723 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #287,sp|AC004897.1|AC004897 Homo sapiens PAC clone RP4-811N16 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU hit 18 : 53497 53568 (fwd) 72.83 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 53497 GGGGGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAU 53555 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 53556 CCAGGUGCCCCCU 53568 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #287,sp|AC004897.1|AC004897 Homo sapiens PAC clone RP4-811N16 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGGGAUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCC hit 19 : 37080 37009 (rev) 65.54 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG +:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 53652 GGGGAUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAU 53710 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+ CCCC 53711 CCGGGUGCCCCCC 53723 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCACUUGACUGCAGAUCAAGAAGUCCUUGGUUCAAAUCCAGGUGCCCCCU hit 20 : 51899 51970 (fwd) 71.87 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA:::GACU+ + AUC:::A+GUC: :GGUUC+AAU 51899 GGGGGUAUAGCUCAGG-GGUAGAGCACUUGACUGCAGAUCAAGAAGUCCUUGGUUCAAAU 51957 >>>>>))))))): 61 CCcgccaucccCA 73 CC: ::+:CCCC 51958 CCAGGUGCCCCCU 51970 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 0 ----hitSequence: GGGCGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAUCUGGGUGCCCACU hit 21 : 62070 62141 (fwd) 57.71 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G G :+:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC:C::GUUC+AAU 62070 GGGCGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAU 62128 >>>>>))))))): 61 CCcgccaucccCA 73 C::G::+: C C 62129 CUGGGUGCCCACU 62141 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGGGCUAGAGCUUUUUGACUGUAGAGCAAGAGGUCCCUGGUUCAAAUCCAGGUUCUCCCU hit 22 : 63401 63473 (fwd) 49.83 bits (((((((,,<<<<_______._>>>>,.<<<<<_______>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgUUGGU.AgaGCa.ucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgA 58 GGG : :UAGCUCAG GG AGAGC ::G CU+U+ A C:: AGGUC:C:GGUUC+A 63401 GGGGGUAUAGCUCAG--GGCuAGAGCUuUUUGACUGUAGAGCAAGAGGUCCCUGGUUCAA 63458 __>>>>>))))))): 59 aUCCcgccaucccCA 73 AUCC:G:: : CCC 63459 AUCCAGGUUCUCCCU 63473 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCUCUGGUUCAAAUCCAGGUGCCCCCU hit 23 : 90084 90155 (fwd) 68.99 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC C:GGUUC+AAU 90084 GGGGGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCUCUGGUUCAAAU 90142 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G :+:CCCC 90143 CCAGGUGCCCCCU 90155 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 0 ----hitSequence: GGGCGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAUCUGGGUGCCCCCU hit 24 : 103314 103385 (fwd) 64.75 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGG :+:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC:C::GUUC+AAU 103314 GGGCGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAU 103372 >>>>>))))))): 61 CCcgccaucccCA 73 C::G::+: CCC 103373 CUGGGUGCCCCCU 103385 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 0 ----hitSequence: GGGUGUAUGGCUCAGGGGUAGAGAAUUUGACUAGAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU hit 25 : 113735 113806 (fwd) 53.48 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGG :+:U+ CUCAG GGUAGAG A ::GACU + AUC:: AGGUC:C:GGUUC+AAU 113735 GGGUGUAUGGCUCAGG-GGUAGAGAAUUUGACUAGAGAUCAAGAGGUCCCUGGUUCAAAU 113793 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+: CCC 113794 CCAGGUGCCCCCU 113806 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU hit 26 : 141046 141117 (fwd) 72.83 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 141046 GGGGGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAU 141104 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 141105 CCAGGUGCCCCCU 141117 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAAAUCAAGAGGUCCCUGAUUCAAAUCCAGGUGCCCCCU hit 27 : 118495 118424 (rev) 68.32 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA ::GACU+ +AAUC:: AGGUC:C:G:UUC+AAU 32689 GGGGGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAAAUCAAGAGGUCCCUGAUUCAAAU 32747 >>>>>))))))): 61 CCcgccaucccCA 73 :C:G::+:CCCC 32748 CCAGGUGCCCCCU 32760 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCACAGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGUUACUCCCU hit 28 : 100644 100573 (rev) 62.40 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGG :U:UAGCUCA GGUAGAGCA ::GACU+ + AUC:: AGGUC C:GGUUC+AAU 50540 GGGGGUAUAGCUCACA-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAU 50598 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G :A: CCC 50599 CCGGUUACUCCCU 50611 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #322,sp|AC004932.4|AC004932 Homo sapiens clone RP5-943F2, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCACUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU hit 29 : 94503 94432 (rev) 75.55 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA:::GACU+ + AUC:::AGGUC:C:GGUUC+AAU 56681 GGGGGUAUAGCUCAGG-GGUAGAGCACUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAU 56739 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 56740 CCAGGUGCCCCCU 56752 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #330,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGCAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU hit 30 : 11796 11867 (fwd) 78.10 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:::UAGCUCAGU GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 11796 GGGGGCAUAGCUCAGU-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAU 11854 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::::CCCC 11855 CCAGGUGCCCCCU 11867 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #330,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU hit 31 : 32735 32806 (fwd) 72.83 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 32735 GGGGGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAU 32793 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 32794 CCAGGUGCCCCCU 32806 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #330,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUUAGCGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU hit 32 : 116815 116744 (rev) 73.84 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCU:AG GGUA:AGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 5945 GGGGGUAUAGCUUAGC-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAU 6003 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 6004 CCGGGUGCCCCCU 6016 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #330,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUGAGGAGUAAACCAUUUGGCUGCAGAUCAAGUGGUCCCUGGUUCAAAUAUGGGUGCCCUCU hit 33 : 107741 107670 (rev) 33.64 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G GG:+:UAG U:AG GUA:A CA ::G CU+ + A C:: +GGUC:C UUC+AAU 15019 GGGGGUAUAGCUGAGG-AGUAAACCAUUUGGCUGCAGAUCAAGUGGUCCCUGGUUCAAAU 15077 >>>>>))))))): 61 CCcgccaucccCA 73 G::+:CC C 15078 AUGGGUGCCCUCU 15090 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #330,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCC hit 34 : 79187 79116 (rev) 71.16 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 43573 GGGGGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAU 43631 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 43632 CCAGGUGCCCCCC 43644 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #330,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGUUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU hit 35 : 77436 77365 (rev) 67.93 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAG:UCAG GGUAGA:CA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 45324 GGGGGUAUAGUUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAU 45382 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 45383 CCAGGUGCCCCCU 45395 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #330,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7, complete sequence. ----isReversed: 1 ----hitSequence: UCAAUUAUAGCUCAGUGGUAGAGCAUUUAACUGUAGAUCAAGAGGUCCCUGGAUCAACUCUGGGU hit 36 : 58335 58271 (rev) 29.67 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ++ ++U:UAGCUCAGU GGUAGAGCA :: ACU+U+ AU :: AGGUC:C G UC+A U 64425 UCAAUUAUAGCUCAGU-GGUAGAGCAUUUAACUGUAGAUCAAGAGGUCCCUGGAUCAACU 64483 >>>>>))))))): 61 CCcgccaucccCA 73 C G:: 64484 CUGGGU------- 64489 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #330,sp|AC004941.2|AC004941 Homo sapiens PAC clone RP5-979P20 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAUCUGGGUGCCCCCU hit 37 : 57352 57281 (rev) 71.07 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC:C::GUUC+AAU 65408 GGGGGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAU 65466 >>>>>))))))): 61 CCcgccaucccCA 73 C::G::+:CCCC 65467 CUGGGUGCCCCCU 65479 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #365,sp|AC004979.1|AC004979 Homo sapiens PAC clone RP5-1154E9 from 7q31.3-q32, complete sequence. ----isReversed: 0 ----hitSequence: GGUAAAAUGGCUGAGUAAGCAUUAGACUGUAAAUCUAAAGACAGAGGUCAAGGCCUCUUUUUACCA hit 38 : 55490 55555 (fwd) 54.81 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GG::A::U+GCU:AG :AGCAU::GACU+U+AAUC::AAG+ C:::GG UC+A 55490 GGUAAAAUGGCUGAG-----UAAGCAUUAGACUGUAAAUCUAAAGA-CAGAGG-UCAAGG 55542 >>>>>))))))): 61 CCcgccaucccCA 73 CC:::::U::CCA 55543 CCUCUUUUUACCA 55555 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #365,sp|AC004979.1|AC004979 Homo sapiens PAC clone RP5-1154E9 from 7q31.3-q32, complete sequence. ----isReversed: 0 ----hitSequence: AAGGGUUUAGCUUAGUUAAAGUGGUUGAUUUGCAUUCAACUGAUGCAGAAUAGAGUCUGGCAGUCCUUA hit 39 : 55737 55805 (fwd) 37.58 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::GG +:UA:CU:AGUU A:AG:+:::GA+UU A UC:::+G+ +GC:G: U GA 55737 AAGGGUUUAGCUUAGUU---AAAGUGGUUGAUUUGCAUUCAACUGA-UGCAGAAUAGAG- 55791 >>>>.>))))))): 61 CCcg.ccaucccCA 73 :C:G C:+ CC::A 55792 UCUGgCAGUCCUUA 55805 ----endhit ----hitSequence: UAGAUUGAAGCCAGUUGAUUAGGGUGUUUAGCUGUUAACUAAAUUUUCGUGGGUUUGAAUUCCACCAAUCUAG hit 40 : 55663 55735 (fwd) 41.82 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 ::G::UG A:C: U G U A :G:+U::::CU+UUAA::::A+ UCG:GG UU GAA 55663 UAGAUUGAAGCCAGUU-GAUuAGGGUGUUUAGCUGUUAACUAAAUUUUCGUGGGUUUGAA 55721 _>>>>>))))))): 60 UCCcgccaucccCA 73 U CC:CCA::C:: 55722 UUCCACCAAUCUAG 55735 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #365,sp|AC004979.1|AC004979 Homo sapiens PAC clone RP5-1154E9 from 7q31.3-q32, complete sequence. ----isReversed: 0 ----hitSequence: UAGGACGUGGUGUAGUAGGUAGCAUGGAGAAUGUUGAAUUCUCAGGGGUAGGUUCAAUUCCUAUAGUUCUAG hit 41 : 56974 57045 (fwd) 40.78 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::G A: U+::::AGU GGUA::::+::G:A+ UU AAU:C::AGG :::GGUUC+A+U 56974 UAGGACGUGGUGUAGUAGGUAGCAUGGAGAAUGUUGAAUUCUCAGG-GGUAGGUUCAAUU 57032 >>>>>))))))): 61 CCcgccaucccCA 73 CC::: :U C:: 57033 CCUAUAGUUCUAG 57045 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #365,sp|AC004979.1|AC004979 Homo sapiens PAC clone RP5-1154E9 from 7q31.3-q32, complete sequence. ----isReversed: 1 ----hitSequence: GUUAAGAUGGCAGAGCCCGGCAAUUGCAUAAAACUUAAAACUUUAUAACUGGAGGUUCAACUCCUCUUCUUCUUC hit 42 : 58456 58382 (rev) 35.42 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgUU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgA 58 : :A::U+GC: AG + GG A :GCAU::: CUU++AA :::A+++ +:::GGUUC+A 23964 GUUAAGAUGGCAGAGCCcGGCaAUUGCAUAAAACUUAAAACUUUAUAACUGGAGGUUCAA 24023 __>>>>>))))))): 59 aUCCcgccaucccCA 73 UCC:::::U: : 24024 CUCCUCUUCUUCUUC 24038 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #549,sp|AC005225.2|AC005225 Homo sapiens PAC clone RP3-414A15 from 14q24.3, complete sequence. ----isReversed: 0 ----hitSequence: ACCCAGAUAGCUCAGUUGAUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAUGUCCCUGU hit 43 : 71470 71535 (fwd) 47.86 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ++ A+:UAGCUCAGUUG UAGAGCAUC:GACUUUUAAUC:GA GGUC::GGGUUC+ U 71470 ACCCAGAUAGCUCAGUUGAUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAUGU 71529 >>>>>))))))): 61 CCcgccaucccCA 73 CCC::: 71530 CCCUGU------- 71535 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #570,sp|AC005248.1|AC005248 Homo sapiens BAC clone GS1-83B20 from 7p21-p22, complete sequence. ----isReversed: 0 ----hitSequence: GUUCCAGUUGCACAGUUGAUUAGUACACGGUAUUUAUGAUGCCAAGGCUGUAAGUUCAUGCCUCACCUAGAGCA hit 44 : 41110 41183 (fwd) 26.94 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G :: :GU G :CAGUUG U AG: CA :G:A+UU+U AU:C: AGG +G: :GUUC+ 41110 GUUCCAGUUGCACAGUUGAUuAGUACACGGUAUUUAUGAUGCCAAGGCUGUAAGUUCAUG 41169 _>>>>>))))))): 60 UCCcgccaucccCA 73 C: :CC: :: CA 41170 CCUCACCUAGAGCA 41183 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #614,sp|AC005316.1|AC005316 Human Chromosome 15q26.1 PAC clone pDJ10k5 containing human DNA polymerase gamma (polg) gene, complete sequence. ----isReversed: 0 ----hitSequence: GGCCGCGUGGCCUAAUGGAUAAGGCGUCUGACUUCGGAUCAGAAGAUUGCAGGUUCGAGUCCUGCCGCGGUCG hit 45 : 29120 29192 (fwd) 72.71 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G ::::GU+GC::A+U GG A::GC+UC:GACUU AUC:GAAG+U+GC:GGUUCGA 29120 GGCCGCGUGGCCUAAU-GGAuAAGGCGUCUGACUUCGGAUCAGAAGAUUGCAGGUUCGAG 29178 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCC:GCC:::: C 29179 UCCUGCCGCGGUCG 29192 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #615,sp|AC005317.2|AC005317 Homo sapiens chromosome 15q26.1 clone PAC pDJ457j11 containing DNA polymerase gamma (polg) gene, complete sequence. ----isReversed: 0 ----hitSequence: GGCCGCGUGGCCUAAUGGAUAAGGCGUCUGACUUCGGAUCAGAAGAUUGCAGGUUCGAGUCCUGCCGCGGUCG hit 46 : 85887 85959 (fwd) 72.71 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G ::::GU+GC::A+U GG A::GC+UC:GACUU AUC:GAAG+U+GC:GGUUCGA 85887 GGCCGCGUGGCCUAAU-GGAuAAGGCGUCUGACUUCGGAUCAGAAGAUUGCAGGUUCGAG 85945 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCC:GCC:::: C 85946 UCCUGCCGCGGUCG 85959 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #626,sp|AC005329.1|AC005329 Homo sapiens chromosome 19, cosmid R34382, complete sequence. ----isReversed: 0 ----hitSequence: GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG hit 47 : 7172 7245 (fwd) 71.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:: :UGU+GC:CA+U+GGU AG:GC+U::G:CU+UUAA:C::AAGGU+G::GGUUCGA 7172 GUCUCUGUGGCGCAAUCGGUuAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAG 7231 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC::CCA: ::C 7232 CCCACCCAGGGACG 7245 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #626,sp|AC005329.1|AC005329 Homo sapiens chromosome 19, cosmid R34382, complete sequence. ----isReversed: 1 ----hitSequence: GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCA hit 48 : 7043 6971 (rev) 74.41 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G::GA::UAGCUCAGUUGG AGAGC+U::GACU+++ AUC::AAGGUC:C GGUUCGA+ 27833 GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUC 27892 >>>>>))))))): 61 CCcgccaucccCA 73 CC G:::UC::CA 27893 CCGGGUUUCGGCA 27905 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #845,sp|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence. ----isReversed: 0 ----hitSequence: GCCUUCUUAGCCCUGGAGGCAGCACAUCAGUCUCAUAAUCUGAAGGUCCCGAGCUUGAACCUCAGAGAGGGCA hit 49 : 144418 144490 (fwd) 27.57 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G:: :::UAG C G GG AG CAUC:G CU +UAA C:GAAGGUC: G:G U GAA 144418 GCCUUCUUAGCCCUGGAGGCAGCACAUCAGUCUCAUAAUCUGAAGGUCCCGAGCUUGAAC 144477 >>>>>))))))): 61 CCcgccaucccCA 73 C:C :::: ::CA 144478 CUCAGAGAGGGCA 144490 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #845,sp|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUCUAUGGCUUAGUUGGUUAAAGCGCCUGUCUCGUAAACAGGAGAUCCUGGGUUCGACUCCCAGUGGGGCCU hit 50 : 152761 152688 (rev) 73.53 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 GG: :+:U+GCU:AGUUGGU A:AGC+:C:G:CU UAA:C:G:AG+UC::GGGUUCGA 34783 GGCUCUAUGGCUUAGUUGGUuAAAGCGCCUGUCUCGUAAACAGGAGAUCCUGGGUUCGAC 34842 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCCC:::+: :CC 34843 UCCCAGUGGGGCCU 34856 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #845,sp|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGUAGCGUGGCCGAGUGGUCUAAGACGCUGGAUUAAGGCUCCAGUCUCUUCGGGGGCGUGGGUUUGAAUCCCACCGCUGCCA hit 51 : 142396 142315 (rev) 46.21 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,..........,,, 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUc 48 GG :::GU+G ::AGU GGU A:: C+::GGA+U + UCC::+ G C 45148 GGUAGCGUGGCCGAGU-GGUcuAAGACGCUGGAUUAAGGCUCCAGU-cucuucggggG-C 45204 <<<<<_______>>>>>))))))): 49 gcgGGUUCgAaUCCcgccaucccCA 73 G:GGGUU GAAUCCC:CC::: CCA 45205 GUGGGUUUGAAUCCCACCGCUGCCA 45229 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #845,sp|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence. ----isReversed: 1 ----hitSequence: GGCUCUAUGGCUUAGUUGGUUAAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGUAGAGCCU hit 52 : 138316 138243 (rev) 81.35 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 GG:::U:U+GCU:AGUUGGU A:AGC+:C:G:CUU UAA:C:G:AG+UC::GGGUUCGAA 49228 GGCUCUAUGGCUUAGUUGGUuAAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCGAA 49287 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCCC:::A:::CC 49288 UCCCAGUAGAGCCU 49301 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #911,sp|AC005783.1|AC005783 Homo sapiens chromosome 19, cosmid R33083, complete sequence. ----isReversed: 0 ----hitSequence: GCGUUGGUGGUAUAGUGGUUAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA hit 53 : 26761 26832 (fwd) 66.37 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:G:::GU+:: :AGU GGU A: ::A:C:G:CUU AA:C:G:+G+ C:CGGGUUCGA+ 26761 GCGUUGGUGGUAUAGU-GGUuAGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAU 26818 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCCCG:C:::C:CA 26819 UCCCGGCCAACGCA 26832 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #911,sp|AC005783.1|AC005783 Homo sapiens chromosome 19, cosmid R33083, complete sequence. ----isReversed: 1 ----hitSequence: GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA hit 54 : 27398 27326 (rev) 67.56 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::GUAG:: AG GGU A ::CAU::G:CU + A :C::AAGGUC:C:GGUUCGA+ 16104 GUUUCCGUAGUGUAGC-GGUuAUCACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAU 16162 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:G:C:::::CA 16163 CCCGGGCGGAAACA 16176 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #972,sp|AC005875.2|AC005875 citb_188_b_12, complete sequence. ----isReversed: 0 ----hitSequence: UUAAAUUUAAAUUUAAAAUUAAAUUAUUAAAUUUAAAAUUUAAAUUUUAAAAUUAAAUUAUUAAAUUUAAA hit 55 : 87061 87131 (fwd) 29.72 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 ::::AU:UA::U: + U A:A::AU:::A+UU++AAU:::AA +::: :UU +A+ 87061 UUAAAUUUAAAUUUAA-AAUuAAAUUAUUAAAUUUAAAAUUUAAAUU-UUAAAAUUAAAU 87118 _>>>>>))))))): 60 UCCcgccaucccCA 73 : ::::AU::::A 87119 -UAUUAAAUUUAAA 87131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1088,sp|AC006045.2|AC006045 Homo sapiens BAC clone RP11-547G15 from 7, complete sequence. ----isReversed: 1 ----hitSequence: AGCAGAGUGGCACAGUUAGAGUGCUGGGCUCAUAAACCAGAUAUUGAUGCACUGUAACCAUCUUCUGCUA hit 56 : 190068 189999 (rev) 27.20 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :G:::::U+:C CAGUU AG G:+::GG CU +UAA CC::A +U+G::G G A 3059 AGCAGAGUGGCACAGUU---AGAGUGCUGGGCUCAUAAACCAGAUAUUGAUGCACUGUAA 3115 >>>>>))))))): 61 CCcgccaucccCA 73 C::C:::::C:A 3116 CCAUCUUCUGCUA 3128 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1228,sp|AC006312.8|AC006312 Homo sapiens chromosome 9, clone hRPK.401_G_18, complete sequence. ----isReversed: 0 ----hitSequence: GGCUCUGUGGCGCAAUGGAUAGCGCAUUGGACUUCUAGCUGAGCCUAGUGUGGUCAUUCAAAGGUUGUGGGUUCGAGUCCCACCAGAGUCG hit 57 : 104698 104788 (fwd) 41.50 bits (((((((,,<<<<_______._>>>>,<<<<<_______...................>> 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAA...................uC 40 G :::UGU+GC:CA+U GG AG:GCAU:G ACUU UA U 104698 GGCUCUGUGGCGCAAU-GGAuAGCGCAUUGGACUUCUA-gcugagccuaguguggucaUU 104755 >>>,,,,,<<<<<_______>>>>>))))))): 41 cgaaGgUcgcgGGUUCgAaUCCcgccaucccCA 73 C:AAGGU+G:GGGUUCGA UCCC:CCA::: C 104756 CAAAGGUUGUGGGUUCGAGUCCCACCAGAGUCG 104788 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1239,sp|AC006324.3|AC006324 Homo sapiens PAC clone RP5-1164F5 from 7, complete sequence. ----isReversed: 1 ----hitSequence: ACUGAAAUCGCUAAAGGGAAAGCUUGAAUUUAAAUUUAUUUAAUGUUCAAAUCAUUAUUUCAGUC hit 58 : 144362 144298 (rev) 25.41 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::GA::U GCU:A+ GG A:AGC U :: UUU+AA :: A+ +::::GUUC+AAU 12949 ACUGAAAUCGCUAAAG-GG-AAAGCUUGAA--UUUAAA-UUUAU---UUAAUGUUCAAAU 13000 >>>>>))))))): 61 CCcgccaucccCA 73 C::::::UC::: 13001 CAUUAUUUCAGUC 13013 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1257,sp|AC006345.4|AC006345 Homo sapiens PAC clone RP4-791N16 from 14q24.3, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU hit 59 : 104951 104880 (rev) 72.66 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAG GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 20558 GGGGGUAUAGCUCAGG-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAU 20616 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 20617 CCGGGUGCCCCCU 20629 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1271,sp|AC006359.3|AC006359 Homo sapiens clone DJ1135M02, complete sequence. ----isReversed: 0 ----hitSequence: GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG hit 60 : 106401 106474 (fwd) 71.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:: :UGU+GC:CA+U+GGU AG:GC+U::G:CU+UUAA:C::AAGGU+G::GGUUCGA 106401 GUCUCUGUGGCGCAAUCGGUuAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAG 106460 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC::CCA: ::C 106461 CCCACCCAGGGACG 106474 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1318,sp|AC006441.13|AC006441 Homo sapiens chromosome 17, clone hRPC.56_K_13, complete sequence. ----isReversed: 0 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCU hit 61 : 155926 155997 (fwd) 74.07 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAGU GGUAGAGCA ::GACU+ + AUC:: AGGUC:C GGUUC+AAU 155926 GGGGGUAUAGCUCAGU-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAU 155984 >>>>>))))))): 61 CCcgccaucccCA 73 CC G::+:CCCC 155985 CCGGGUGCCCCCU 155997 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1318,sp|AC006441.13|AC006441 Homo sapiens chromosome 17, clone hRPC.56_K_13, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCU hit 62 : 157644 157573 (rev) 76.55 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GGGG:+:UAGCUCAGU GGUAGAGCA ::GACU+ + AUC:: AGGUC:C:GGUUC+AAU 5353 GGGGGUAUAGCUCAGU-GGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAU 5411 >>>>>))))))): 61 CCcgccaucccCA 73 CC:G::+:CCCC 5412 CCGGGUGCCCCCU 5424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1324,sp|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.58_E_17, complete sequence. ----isReversed: 1 ----hitSequence: GGGGGUAGGGCUCAGGGAUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCGAAUCUAGGUGCCCCCU hit 63 : 278796 278725 (rev) 51.61 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 GGGG:+: +GCUCAG GG AGAGCA ::GACU+ + AUC:: AGGUC:C GUUCGAA 7963 GGGGGUAGGGCUCAG--GGAuAGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCGAA 8020 _>>>>>))))))): 60 UCCcgccaucccCA 73 UC G::+:CCCC 8021 UCUAGGUGCCCCCU 8034 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1324,sp|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.58_E_17, complete sequence. ----isReversed: 1 ----hitSequence: GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG hit 64 : 196857 196784 (rev) 71.49 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:: :UGU+GC:CA+U+GGU AG:GC+U::G:CU+UUAA:C::AAGGU+G::GGUUCGA 89902 GUCUCUGUGGCGCAAUCGGUuAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAG 89961 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC::CCA: ::C 89962 CCCACCCAGGGACG 89975 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1442,sp|AC006970.6|AC006970 Homo sapiens clone RP4-725G10, complete sequence. ----isReversed: 0 ----hitSequence: AUAAUAAUAAUAUAAUUAAUAUAUAUUAUAUUUAUAAUAAUAAUAUAUAUAAUAUAUAUUAUAUUUAUUAUA hit 65 : 113383 113454 (fwd) 25.43 bits (((((((,,<<<<________>>>>,<<<<<_..______>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaC..UuuuAAuCcgaaGgUcgcgGGUUCgA 58 :::::::UA::::A+UU A::::AU:::A+ UU+UAAU:::AA + +::::: U A 113383 AUAAUAAUAAUAUAAUU---AAUAUAUAUUAUauUUAUAAUAAUAAUA-UAUAUAAUAUA 113438 _._>>>>>))))))): 59 a.UCCcgccaucccCA 73 + U::::::::::::A 113439 UaUUAUAUUUAUUAUA 113454 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1629,sp|AC007282.4|AC007282 Homo sapiens BAC clone RP11-484N9 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AAGAUACUAGUAAAAAUGUUACAUAACUUUGUCAAAGUUAAUUUAUAGGUUAAAAUUCUUUAUAUCUUU hit 66 : 77947 77879 (rev) 32.66 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::G::: UAG:: A+ U ::CAU::::+U+U AA::::AA +: :G UU +AAU 104686 AAGAUACUAGUAAAAAU---GUUACAUAACUUUGUCAAAGUUAAUU-UAUAGGUUAAAAU 104741 >>>>>))))))): 61 CCcgccaucccCA 73 C: : :::C:: 104742 UCUUUAUAUCUUU 104754 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1629,sp|AC007282.4|AC007282 Homo sapiens BAC clone RP11-484N9 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AUUCUUUUAGUAUUAACUGUACAACUGACUUCCAAUCAGUUAGCUUCAGUCUAAGCUGGAAAAUAAUA hit 67 : 73888 73821 (rev) 26.55 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::: :U:UAG::: + + :::CA:C:GACUU AAUC:G:++G C: ::GU +A 108745 AUUCUUUUAGUAUUAAC---UGUACAACUGACUUCCAAUCAGUUAG-CUUCAGUCUAAG- 108799 >>>>>))))))): 61 CCcgccaucccCA 73 C:: ::A: :::A 108800 CUGGAAAAUAAUA 108812 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1630,sp|AC007283.3|AC007283 Homo sapiens BAC clone RP11-536I18 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GUAAAUAUAGUUUAAUCAAAAUGUUAGAUUGUGGUCUAAUAAUAGAAGUCCGCAACUUCUUAUUUACC hit 68 : 23235 23302 (fwd) 35.19 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G:::AU:UA::U:A+U+ A:A::+U::GA+U+U UC::A+++ +::::GU CG A 23235 GUAAAUAUAGUUUAAUC---AAAAUGUUAGAUUGUGG-UCUAAUAA-UAGAAGUCCGCAA 23289 >>>>>))))))): 61 CCcgccaucccCA 73 C:::::AU:::C 23290 CUUCUUAUUUACC 23302 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1630,sp|AC007283.3|AC007283 Homo sapiens BAC clone RP11-536I18 from 2, complete sequence. ----isReversed: 0 ----hitSequence: ACUUUUAGAGGAUGAGAGUUAUCCAUUGGUCUUAGGAACCAAAAAUAUUGGUGCAACUCCAAAUAAAAGUA hit 69 : 23362 23432 (fwd) 38.96 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::::U: AG::: + GU :::CAU:GG:CUU+ A:CC:AA++ + ::GGU C+A U 23362 ACUUUUAGAGGAUGAG-AGUUAUCCAUUGGUCUUAGGAACCAAAAA-UAUUGGUGCAACU 23419 >>>>>))))))): 61 CCcgccaucccCA 73 CC:: :A:::::A 23420 CCAAAUAAAAGUA 23432 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1636,sp|AC007298.17|AC007298 Homo sapiens 12q22 BAC RPCI11-256L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG hit 70 : 145366 145295 (rev) 61.42 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 ::: :::UA::::AGU GGU A:::: :C:G:CU+U A :C:G:AG+ C::GGGUUCGA+ 56207 UCCUCGUUAGUAUAGU-GGUgAGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCGAU 56264 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCCC::::: ::: 56265 UCCCCGACGGGGAG 56278 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1649,sp|AC007324.55|AC007324 Homo sapiens chromosome 22 clone b293 map 22q11, complete sequence. ----isReversed: 0 ----hitSequence: AUAUAUAUAUAUAAAAUAUAUAUAUAAUGUAUUUAAUAUAUAUAUAAUAUAUUAAAUAUAUUAUAUAUA hit 71 : 67230 67298 (fwd) 25.00 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 ::::AU:UA::U A+ U UA A::AU :::+U +UA ::: A+++ +::: UU +A+ 67230 AUAUAUAUAUAUAAAAUaUAUAUAUAAUGUAUUUAAUAUAUAUAUAA-UAUA--UUAAAU 67286 _>>>>>))))))): 60 UCCcgccaucccCA 73 ::::AU::::A 67287 A--UAUUAUAUAUA 67298 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1650,sp|AC007325.51|AC007325 Homo sapiens chromosome 22 clone b48 map 22q11, complete sequence. ----isReversed: 0 ----hitSequence: AUAUGAUUAUAUAAUUGUAUAUAAUUAUAUAUAUAAUAUAAUAAUAUAUAAUAUCUAUUAUUAUAUCAUAUA hit 72 : 117424 117495 (fwd) 25.89 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,.,<<<<<______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgU.cgcgGGUUCgAa 59 :::::::UA::U A U G A A::AU:::A+ U+UAAU:::A+++U +::::: UC A+ 117424 AUAUGAUUAUAUAAUU-GU-AUAUAAUUAUAUAUAUAAUAUAAUAAUaUAUAAUAUCUAU 117481 _>>>>>))))))): 60 UCCcgccaucccCA 73 U::::::::::::A 117482 UAUUAUAUCAUAUA 117495 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1766,sp|AC007529.5|AC007529 Homo sapiens 12p13 BAC RPCI11-69C13 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: UUAUAUAUAUAUAAAAUUAUAUAUAUAUAAUAUAUAUUAUAUAUAUAAAAUUAUAUAUACAAUAUAUAUUAUAUAUA hit 73 : 110761 110685 (rev) 25.11 bits (((((((,,<<<<_______...._>>>>,<<<<<_______>>>>>,,,,,<<<<<___ 1 GgggaugUAGCucAgUUGGU....AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUC 56 :::AU:UA::U A+ U U A A::AU:::: UU+UA ::::AA++U+:::::U C 36479 UUAUAUAUAUAUAAAAUUAUauauAUAUAAUAUAUAUUAUAUAUAUAAAAUUAUAUAUAC 36538 ____>>>>>))))))): 57 gAaUCCcgccaucccCA 73 +A+ ::::::AU::: A 36539 AAUAUAUAUUAUAUAUA 36555 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1784,sp|AC007557.3|AC007557 Homo sapiens BAC clone RP11-53G8 from 2, complete sequence. ----isReversed: 1 ----hitSequence: ACUUUUAAAUAAUAGAAGUAAUACAUUGGCCUUAAAAGCCAAGAAAAUUGGUGCAGCUCCAAAUAAAAGUA hit 74 : 53334 53264 (rev) 27.63 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::::U: A ::AG GUA:: AU:GG:CUU++AA:CC:A ++ ::GGU C+ U 49049 ACUUUUAAAUAAUAGA-AGUAAUACAUUGGCCUUAAAAGCCAAGAA-AAUUGGUGCAGCU 49106 >>>>>))))))): 61 CCcgccaucccCA 73 CC:: :A:::::A 49107 CCAAAUAAAAGUA 49119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1799,sp|AC007595.9|AC007595 Homo sapiens chromosome 16 clone RP11-109M19, complete sequence. ----isReversed: 1 ----hitSequence: UGAUAAAUAGUUUAAGUUAAAAUAAAUGAUUUUGACUCAUUAGAUUAUGAUAGACCAUAUUUACUAA hit 75 : 136923 136857 (rev) 34.64 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 : :A::UA::U:A+ G UA:A::A:::GA+UUU A UC:::AG+ +:::G U GA 49381 UGAUAAAUAGUUUAA--GUUAAAAUAAAUGAUUUUGACUCAUUAGA-UUAUG-AUAGAC- 49435 >>>>>))))))): 61 CCcgccaucccCA 73 C:::::U: :A 49436 -CAUAUUUACUAA 49447 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1799,sp|AC007595.9|AC007595 Homo sapiens chromosome 16 clone RP11-109M19, complete sequence. ----isReversed: 1 ----hitSequence: ACUUUUAAAGGAUAAGAGUUAUCCAUUGGUCUCAGGAACCAAAAACAUCGGUGCAACUCCAAAUAAAAGUA hit 76 : 135066 134996 (rev) 36.23 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::::U: AG:::A+ GU :::CAU:GG:CU + A:CC:AA++ C : GGU C+A U 51238 ACUUUUAAAGGAUAAG-AGUUAUCCAUUGGUCUCAGGAACCAAAAA-CAUCGGUGCAACU 51295 >>>>>))))))): 61 CCcgccaucccCA 73 CC : :A:::::A 51296 CCAAAUAAAAGUA 51308 ----endhit ----hitSequence: GUAAAUAUAGUUUAACCAAAACAUUAGACUAUGAAUCUAACAAUAGAAGCCCGCAACUUCUUAUCUACC hit 77 : 135194 135126 (rev) 36.51 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G:: AU:UAG:U:A+ + A:A:CAU::GACU U AAUC::A ++ +::::G CG A 51110 GUAAAUAUAGUUUAACC---AAAACAUUAGACUAUGAAUCUAACAA-UAGAAGCCCGCAA 51165 >>>>>))))))): 61 CCcgccaucccCA 73 C:::::AU ::C 51166 CUUCUUAUCUACC 51178 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1837,sp|AC007656.2|AC007656 Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 1 ----hitSequence: GGCAAUGUAGCAUUGUGGCUAAGUGCACAGGCUUUGGAAACUGGCAGGCCUGGGUUCAAAUCCCAGCUUAUUCA hit 78 : 94156 94083 (rev) 27.72 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgA 58 G A GUAGC:: GU GG A::GCA: G +UU AA C : +G C::GGGUUC+A 77081 GGCAAUGUAGCAUUGU-GGCuaAGUGCACAGGCUUUGGAAACUGGCAGGCCUGGGUUCAA 77139 __>>>>>))))))): 59 aUCCcgccaucccCA 73 AUCCC::C U CA 77140 AUCCCAGCUUAUUCA 77154 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #1888,sp|AC007780.10|AC007780 Homo sapiens chromosome 17, clone CTD-2004N4, complete sequence. ----isReversed: 1 ----hitSequence: GGCAGAAUGGUGCAGCGGUUCAGCACCCAGGCUCUGCAGCCAGCUGUUGCCUGGGCUCAAAUCCCAGCUCUGCCA hit 79 : 70771 70697 (rev) 26.99 bits (((((((,,<<<<_______.._>>>>,<<<.<<_______.>>>>>,,,,,<<<<<___ 1 GgggaugUAGCucAgUUGGU..AgaGCaucg.GaCUuuuAA.uCcgaaGgUcgcgGGUUC 56 GG:::: U+G::CAG GGU AG::C ::G ::CU+ + ::C::+ G C::GGG UC 90722 GGCAGAAUGGUGCAGC-GGUucAGCACCCAGgCUCUGCAGCcAGCUGUUG-CCUGGGCUC 90779 ____>>>>>))))))): 57 gAaUCCcgccaucccCA 73 +AAUCCC:: ::::CCA 90780 AAAUCCCAGCUCUGCCA 90796 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2012,sp|AC008079.24|AC008079 Homo sapiens chromosome 22 clone bac519d21 map 22q11, complete sequence. ----isReversed: 0 ----hitSequence: AUAUAUAUAUAUAAAAUAUAUAUAUAAUGUAUUUAAUAUAUAUAUAAUAUAUUAAAUAUAUUAUAUAUA hit 80 : 169384 169452 (fwd) 25.00 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 ::::AU:UA::U A+ U UA A::AU :::+U +UA ::: A+++ +::: UU +A+ 169384 AUAUAUAUAUAUAAAAUaUAUAUAUAAUGUAUUUAAUAUAUAUAUAA-UAUA--UUAAAU 169440 _>>>>>))))))): 60 UCCcgccaucccCA 73 ::::AU::::A 169441 A--UAUUAUAUAUA 169452 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2141,sp|AC008434.5|AC008434 Homo sapiens chromosome 5 clone CTC-325J23, complete sequence. ----isReversed: 0 ----hitSequence: GUUUAUGUAGCUUACUUCCUCAAAGCAAUACACUGAAAAUGUUUCGACAGGCUCAUACCACCCCAUAAACA hit 81 : 9050 9120 (fwd) 25.33 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<.<<_____ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcg.GGUUCgA 58 G:::AUGUAGCU:A UU U A:AGCA: ::ACU+++AAU:: : G+ C :G UC+ 9050 GUUUAUGUAGCUUACUUCCUcAAAGCAAUACACUGAAAAUGUUUCGA-CAGGc---UCAU 9105 __>>>>>))))))): 59 aUCCcgccaucccCA 73 A C C: CAU:::CA 9106 ACCACCCCAUAAACA 9120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2141,sp|AC008434.5|AC008434 Homo sapiens chromosome 5 clone CTC-325J23, complete sequence. ----isReversed: 0 ----hitSequence: CAGAGUGUAGCUUAACAUAAAGCACCCAACUUACACUUAGGAGAUUUCAACUCAACUUGACCACUCUGA hit 82 : 10069 10137 (fwd) 37.24 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::G::UGUAGCU:A+ A:AGCA:C :ACUU+ A U: G:AG+ + :::: UC+A 10069 CAGAGUGUAGCUUAAC-AU-AAAGCACCCAACUUACACUUAGGAGA-UUUCAACUCAAC- 10124 >>>>>))))))): 61 CCcgccaucccCA 73 :::: CA::C::A 10125 UUGACCACUCUGA 10137 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2147,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12, complete sequence. ----isReversed: 0 ----hitSequence: GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGGGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 83 : 8240 8321 (fwd) 56.69 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,..........,,, 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUc 48 GG :::GU+GC::AG GGU A::GC+::GGA+U + UCC::+ G C 8240 GGUAGCGUGGCCGAGC-GGUcuAAGGCGCUGGAUUAAGGCUCCAGU-cucuucggggG-C 8296 <<<<<_______>>>>>))))))): 49 gcgGGUUCgAaUCCcgccaucccCA 73 G:GGGUUCGAAUCCC:CC::: CCA 8297 GUGGGUUCGAAUCCCACCGCUGCCA 8321 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2147,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12, complete sequence. ----isReversed: 0 ----hitSequence: GGGGAUGUAGCUCAGUGGUAGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA hit 84 : 27407 27478 (fwd) 70.04 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GG GAUGUAGCUCAGU GGUAGAGC+::: :+UU A : :::AGG C:CGGGUUCGA+ 27407 GGGGAUGUAGCUCAGU-GGUAGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCGAUC 27465 >>>>>))))))): 61 CCcgccaucccCA 73 CCCG:CAUC CCA 27466 CCCGGCAUCUCCA 27478 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2147,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12, complete sequence. ----isReversed: 0 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 85 : 28294 28366 (fwd) 68.31 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G::: :UAGCUCAGU+GGUAGAGCAU::GACU UUAAUC::A GGUCG:GGGUUCGA 28294 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGC 28353 >>>>>))))))): 61 CCcgccaucccCA 73 CCC:C: :::C 28354 CCCACGUUGGGCG 28366 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2147,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12, complete sequence. ----isReversed: 1 ----hitSequence: GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA hit 86 : 43006 42934 (rev) 68.11 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::GUAG:: AGU GGU A ::C+U::G:CU + A :C::AAGGUC:C:GGUUCGAA 77510 GUUUCCGUAGUGUAGU-GGUuAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAA 77568 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:G:C:::::CA 77569 ACCGGGCGGAAACA 77582 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2147,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 87 : 42590 42518 (rev) 68.31 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G::: :UAGCUCAGU+GGUAGAGCAU::GACU UUAAUC::A GGUCG:GGGUUCGA 77926 GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGC 77985 >>>>>))))))): 61 CCcgccaucccCA 73 CCC:C: :::C 77986 CCCACGUUGGGCG 77998 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2147,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12, complete sequence. ----isReversed: 1 ----hitSequence: GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA hit 88 : 38881 38809 (rev) 66.43 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::GUAG:: AGU GGU A ::C+U::G:CU + A :C::AAGGUC:C:GGUUCGAA 81635 GUUUCCGUAGUGUAGU-GGUuAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAA 81693 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:G:C:::::CA 81694 ACCGGGCGGAAACA 81707 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2147,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12, complete sequence. ----isReversed: 1 ----hitSequence: GGCUCCAUAGCUCAGGGGUUAGAGCACUGGUCUUGUAAACCAGGGUCGCGAGUUCAAAUCUCGCUGGGGCCU hit 89 : 12297 12226 (rev) 70.56 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 GG: :::UAGCUCAG GGU AGAGCA::GG:CUU UAA:CC:: G CGCG:GUUC+AA 108219 GGCUCCAUAGCUCAGG-GGUuAGAGCACUGGUCUUGUAAACCAGGGU-CGCGAGUUCAAA 108276 _>>>>>))))))): 60 UCCcgccaucccCA 73 UC:CGC::: :CC 108277 UCUCGCUGGGGCCU 108290 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2147,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12, complete sequence. ----isReversed: 1 ----hitSequence: GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC hit 90 : 9464 9393 (rev) 59.56 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GG:::::U+::: AG GGUA ::: :::G:+UU :C:::AGGUC:CGGGUUC+AAU 111052 GGCUCGUUGGUCUAGG-GGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAU 111110 >>>>>))))))): 61 CCcgccaucccCA 73 CCCG::::::CC 111111 CCCGGACGAGCCC 111123 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2147,sp|AC008443.10|AC008443 Homo sapiens chromosome 5 clone CTC-338M12, complete sequence. ----isReversed: 1 ----hitSequence: GUUUCCGUAGUGUAGUGGUCAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA hit 91 : 9027 8955 (rev) 66.43 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::GUAG:: AGU GGU A ::C+U::G:CU + A :C::AAGGUC:C:GGUUCGAA 111489 GUUUCCGUAGUGUAGU-GGUcAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAA 111547 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:G:C:::::CA 111548 ACCGGGCGGAAACA 111561 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2200,sp|AC008512.8|AC008512 Homo sapiens chromosome 5 clone CTC-454K8, complete sequence. ----isReversed: 1 ----hitSequence: GUUUAUGUAGCUUAAUUAUUAAAAGCAAGACACUGAAAAUGUCUAGACGGACUUAUUACCCCAUAAACA hit 92 : 95691 95623 (rev) 38.29 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::AUGUAGCU:A+UU U A:AGCA::::ACU+++AAU::::AG+ CG: UU A+ 15241 GUUUAUGUAGCUUAAUUAUUaAAAGCAAGACACUGAAAAUGUCUAGA-CGGAC-UU--AU 15296 _>>>>>))))))): 60 UCCcgccaucccCA 73 U :CCAU:::CA 15297 U-ACCCCAUAAACA 15309 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2202,sp|AC008514.8|AC008514 Homo sapiens chromosome 5 clone CTC-455F18, complete sequence. ----isReversed: 1 ----hitSequence: GUAUGAAUAGUAUAAUUUUGAAUAUACUACAUUUUAGGUUAGAGGCCUAAGAGCUAGUCUUAGUUUAUUCU hit 93 : 13184 13114 (rev) 25.57 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G :: ::UA::::A+U U A::::A::: A+UUU+ U :::AGG C::::G C A 159342 GUAUGAAUAGUAUAAU-UUUgAAUAUACUACAUUUUAGGU-UAGAGG-CCUAAGAGCUAG 159398 _>>>>>))))))): 60 UCCcgccaucccCA 73 UC:::::: :: C 159399 UCUUAGUUUAUUCU 159412 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2253,sp|AC008580.7|AC008580 Homo sapiens chromosome 5 clone CTC-564J15, complete sequence. ----isReversed: 0 ----hitSequence: GUUUAUGUAGCUUAAUUAUUAAAAGCAAGACACUGAAAAUGUCUAGACGGACUUAUUACCCCAUAAACA hit 94 : 7078 7146 (fwd) 38.29 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::AUGUAGCU:A+UU U A:AGCA::::ACU+++AAU::::AG+ CG: UU A+ 7078 GUUUAUGUAGCUUAAUUAUUaAAAGCAAGACACUGAAAAUGUCUAGA-CGGAC-UU--AU 7133 _>>>>>))))))): 60 UCCcgccaucccCA 73 U :CCAU:::CA 7134 U-ACCCCAUAAACA 7146 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2283,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14, complete sequence. ----isReversed: 0 ----hitSequence: GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA hit 95 : 39317 39389 (fwd) 68.11 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::GUAG:: AGU GGU A ::C+U::G:CU + A :C::AAGGUC:C:GGUUCGAA 39317 GUUUCCGUAGUGUAGU-GGUuAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAA 39375 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:G:C:::::CA 39376 ACCGGGCGGAAACA 39389 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2283,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14, complete sequence. ----isReversed: 0 ----hitSequence: GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 96 : 44087 44168 (fwd) 56.69 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,..........,,, 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUc 48 GG :::GU+GC::AG GGU A::GC+::GGA+U + UCC::+ G C 44087 GGUAGCGUGGCCGAGC-GGUcuAAGGCGCUGGAUUAAGGCUCCAGU-cucuucggagG-C 44143 <<<<<_______>>>>>))))))): 49 gcgGGUUCgAaUCCcgccaucccCA 73 G:GGGUUCGAAUCCC:CC::: CCA 44144 GUGGGUUCGAAUCCCACCGCUGCCA 44168 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2283,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14, complete sequence. ----isReversed: 0 ----hitSequence: GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA hit 97 : 106401 106473 (fwd) 66.43 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::GUAG:: AGU GGU A ::C+U::G:CU + A :C::AAGGUC:C:GGUUCGAA 106401 GUUUCCGUAGUGUAGU-GGUuAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAA 106459 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:G:C:::::CA 106460 ACCGGGCGGAAACA 106473 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2283,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14, complete sequence. ----isReversed: 0 ----hitSequence: GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA hit 98 : 111857 111929 (fwd) 66.43 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::GUAG:: AGU GGU A ::C+U::G:CU + A :C::AAGGUC:C:GGUUCGAA 111857 GUUUCCGUAGUGUAGU-GGUuAUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAA 111915 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:G:C:::::CA 111916 ACCGGGCGGAAACA 111929 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2283,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14, complete sequence. ----isReversed: 0 ----hitSequence: GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA hit 99 : 115897 115969 (fwd) 68.11 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::GUAG:: AGU GGU A ::C+U::G:CU + A :C::AAGGUC:C:GGUUCGAA 115897 GUUUCCGUAGUGUAGU-GGUuAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAA 115955 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:G:C:::::CA 115956 ACCGGGCGGAAACA 115969 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2283,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14, complete sequence. ----isReversed: 1 ----hitSequence: GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 100 : 116372 116291 (rev) 56.69 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,..........,,, 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUc 48 GG :::GU+GC::AG GGU A::GC+::GGA+U + UCC::+ G C 8342 GGUAGCGUGGCCGAGC-GGUcuAAGGCGCUGGAUUAAGGCUCCAGU-cucuucggagG-C 8398 <<<<<_______>>>>>))))))): 49 gcgGGUUCgAaUCCcgccaucccCA 73 G:GGGUUCGAAUCCC:CC::: CCA 8399 GUGGGUUCGAAUCCCACCGCUGCCA 8423 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2283,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14, complete sequence. ----isReversed: 1 ----hitSequence: GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA hit 101 : 44572 44500 (rev) 68.11 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::GUAG:: AGU GGU A ::C+U::G:CU + A :C::AAGGUC:C:GGUUCGAA 80142 GUUUCCGUAGUGUAGU-GGUuAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAA 80200 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:G:C:::::CA 80201 ACCGGGCGGAAACA 80214 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2283,sp|AC008620.12|AC008620 Homo sapiens chromosome 5 clone CTB-14A14, complete sequence. ----isReversed: 1 ----hitSequence: GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 102 : 39802 39721 (rev) 56.69 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,..........,,, 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUc 48 GG :::GU+GC::AG GGU A::GC+::GGA+U + UCC::+ G C 84912 GGUAGCGUGGCCGAGC-GGUcuAAGGCGCUGGAUUAAGGCUCCAGU-cucuucggagG-C 84968 <<<<<_______>>>>>))))))): 49 gcgGGUUCgAaUCCcgccaucccCA 73 G:GGGUUCGAAUCCC:CC::: CCA 84969 GUGGGUUCGAAUCCCACCGCUGCCA 84993 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2318,sp|AC008661.6|AC008661 Homo sapiens chromosome 5 clone CTB-28J9, complete sequence. ----isReversed: 0 ----hitSequence: AUAUAUAUAAUAUAAUAUAUAAUAUAUAUUUAAGAUAUAUAAUAUAUGAGAUAUAUAAUAUAUAUUUGAGAUAUAUUAUAUAUA hit 103 : 31869 31952 (fwd) 25.15 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,............... 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaG............... 45 ::::AU:UA:: A+U A ::AU::::+U + A ::::AA 31869 AUAUAUAUAAUAUAAU-AU-AUAAUAUAUAUUUAAGAUAUAUAA-uauaugagauauaua 31925 ,,,<<<<<_______>>>>>))))))): 46 gUcgcgGGUUCgAaUCCcgccaucccCA 73 + +:::::UU GA ::::::AU::::A 31926 A-UAUAUAUUUGAGAUAUAUUAUAUAUA 31952 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2326,sp|AC008670.6|AC008670 Homo sapiens chromosome 5 clone CTB-36O1, complete sequence. ----isReversed: 0 ----hitSequence: UGGUAUAUAGUUCAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAUAAUCAUAUUUACCAA hit 104 : 81864 81928 (fwd) 32.52 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :GG:A :UAG:U:A+ + A:A:C+:::GA+UU A UC:::A++ +:::G AAU 81864 UGGUAUAUAGUUCAAAC---AAAACGAAUGAUUUCGACUCAUUAAA-UUAUG---AUAAU 81916 >>>>>))))))): 61 CCcgccaucccCA 73 C:::: U:CC:A 81917 -CAUAUUUACCAA 81928 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2326,sp|AC008670.6|AC008670 Homo sapiens chromosome 5 clone CTB-36O1, complete sequence. ----isReversed: 0 ----hitSequence: ACUUUUAAAGGAUAACAGCCAUCCGUUGGUCUUAGGCCCCAAAAAUUUUGGUGCAACUCCAAAUAAAAGUA hit 105 : 83725 83795 (fwd) 39.74 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::::U: AG:::A+ G :::C+U:GG CUU+ CC:AA++ +:::GGU C+A U 83725 ACUUUUAAAGGAUAAC-AGCCAUCCGUUGGUCUUAGGCCCCAAAAA-UUUUGGUGCAACU 83782 >>>>>))))))): 61 CCcgccaucccCA 73 CC::::A:::::A 83783 CCAAAUAAAAGUA 83795 ----endhit ----hitSequence: GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUCACGACCCCUUAUUUACC hit 106 : 83597 83665 (fwd) 45.05 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G:::AU:UAG:U:A+ + A:A:CAUC:GA+U+U AAUC:GA ++ C:: GG UC+ 83597 GUAAAUAUAGUUUAACC---AAAACAUCAGAUUGUGAAUCUGACAA-CAGAGGCUCACGA 83652 >>>>>))))))): 61 CCcgccaucccCA 73 CC :::AU:::C 83653 CCCCUUAUUUACC 83665 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2326,sp|AC008670.6|AC008670 Homo sapiens chromosome 5 clone CTB-36O1, complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUGUAGUUGAAAUACAAUGAUGGUUUUUCAUAUCAUUGGUCGUGGUUGUAGCCCGUGCAAGAAUA hit 107 : 86201 86133 (rev) 36.86 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::::UGUA::U A+ U A A::+::G :+UUU A : C::+GG +: GGUU A 39834 GUUCUUGUAGUUGAAAU---ACAAUGAUGGUUUUUCAUAUCAUUGG-UCGUGGUUGUAGC 39889 >>>>>))))))): 61 CCcgccaucccCA 73 CC :CA:::::A 39890 CCGUGCAAGAAUA 39902 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2369,sp|AC008724.4|AC008724 Homo sapiens chromosome 5 clone CTB-95C16, complete sequence. ----isReversed: 0 ----hitSequence: AUAUAUAUAUAUAAAAUAUAUAUUAUAUAUUUUAUAUAUAUUAUAUAUAUAAAAUAUAUAUUAUAUAUU hit 108 : 6879 6947 (fwd) 25.80 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::::AU:UA::U A+ U A A:: U:::: UUUUA ::::A+ + +:::::U +A+ 6879 AUAUAUAUAUAUAAAAU---AUAUAUUAUAUAUUUUAUAUAUAUUA-UAUAUAUAAAAUA 6934 >>>>>))))))): 61 CCcgccaucccCA 73 ::::::AU:::: 6935 UAUAUUAUAUAUU 6947 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2379,sp|AC008738.7|AC008738 Homo sapiens chromosome 19 clone CTD-2540B15, complete sequence. ----isReversed: 0 ----hitSequence: GGCGCCGUGGCUUAGUUGGUUAAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCGGUGCCU hit 109 : 46176 46249 (fwd) 75.50 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 GG: ::GU+GCU:AGUUGGU A:AGC+:C:G:CU UAA:C:G:AG+UC::GGGUUCGAA 46176 GGCGCCGUGGCUUAGUUGGUuAAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAA 46235 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCCC::C:: :CC 46236 UCCCAGCGGUGCCU 46249 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2605,sp|AC009019.10|AC009019 Homo sapiens chromosome 16 clone RP11-101E7, complete sequence. ----isReversed: 1 ----hitSequence: GGUAGCGUGGCCGAGUGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCAUUUCGAUGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 110 : 177983 177902 (rev) 61.69 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,..........,,, 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUc 48 GG :::GU+GC::AGU GGU A::GC+::GGA+UU+ UCC::+ G C 1803 GGUAGCGUGGCCGAGU-GGUcuAAGGCGCUGGAUUUAGGCUCCAGU-cauuucgaugG-C 1859 <<<<<_______>>>>>))))))): 49 gcgGGUUCgAaUCCcgccaucccCA 73 G:GGGUUCGAAUCCC:CC::: CCA 1860 GUGGGUUCGAAUCCCACCGCUGCCA 1884 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2614,sp|AC009034.10|AC009034 Homo sapiens chromosome 16 clone RP11-141O15, complete sequence. ----isReversed: 0 ----hitSequence: GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUAAGGCUCCAGUCUCUUCGGGGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 111 : 160932 161013 (fwd) 56.69 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,..........,,, 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUc 48 GG :::GU+GC::AG GGU A::GC+::GGA+U + UCC::+ G C 160932 GGUAGCGUGGCCGAGC-GGUcuAAGGCGCUGGAUUAAGGCUCCAGU-cucuucggggG-C 160988 <<<<<_______>>>>>))))))): 49 gcgGGUUCgAaUCCcgccaucccCA 73 G:GGGUUCGAAUCCC:CC::: CCA 160989 GUGGGUUCGAAUCCCACCGCUGCCA 161013 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2614,sp|AC009034.10|AC009034 Homo sapiens chromosome 16 clone RP11-141O15, complete sequence. ----isReversed: 1 ----hitSequence: GGUAGCGUGGCCGAGUGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCAUUUCGAUGGCGUGGGUUCGAAUCCCACCGCUGCCA hit 112 : 59584 59503 (rev) 61.69 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,..........,,, 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUc 48 GG :::GU+GC::AGU GGU A::GC+::GGA+UU+ UCC::+ G C 106836 GGUAGCGUGGCCGAGU-GGUcuAAGGCGCUGGAUUUAGGCUCCAGU-cauuucgaugG-C 106892 <<<<<_______>>>>>))))))): 49 gcgGGUUCgAaUCCcgccaucccCA 73 G:GGGUUCGAAUCCC:CC::: CCA 106893 GUGGGUUCGAAUCCCACCGCUGCCA 106917 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2661,sp|AC009104.10|AC009104 Homo sapiens chromosome 16 clone RP11-44L9, complete sequence. ----isReversed: 1 ----hitSequence: GCCUGGAUAGCUCAGUUGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCAGGCA hit 113 : 91438 91366 (rev) 80.33 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G:::: :UAGCUCAGUUGGUAGAGCAUC:GACUUUUAAUC:GA GGUC::GGGUUC+A U 66033 GCCUGGAUAGCUCAGUUGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGU 66092 >>>>>))))))): 61 CCcgccaucccCA 73 CCC::: ::::CA 66093 CCCUGUUCAGGCA 66105 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2666,sp|AC009111.8|AC009111 Homo sapiens chromosome 16 clone RP11-468D1, complete sequence. ----isReversed: 1 ----hitSequence: UAUUAAAUUUUAAUUUAAUUAUUUUAAAUUAAAAUUUUAAUUUAAUUAUUUUAAAUUAAAAUUUUAAUUUAAUUA hit 114 : 53304 53230 (rev) 25.80 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgA 58 :::A::U ::: U U :::AU:::A UUUUAAU:::A+ +U+:::::UU +A 100153 UAUUAAAUUUUAAUUUAAUUauUUUAAAUUAAAAUUUUAAUUUAAUUAUUUUAAAUUAAA 100212 __>>>>>))))))): 59 aUCCcgccaucccCA 73 AU:::::::U::: A 100213 AUUUUAAUUUAAUUA 100227 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2687,sp|AC009140.6|AC009140 Homo sapiens chromosome 16 clone RP11-53K15, complete sequence. ----isReversed: 0 ----hitSequence: GUUCUUAUAGUUGAAGUACAACGAUGAGUUUUCAUGUCAUUAGUCACGGUUAUAGUCCAUGUGGGAAUA hit 115 : 51121 51189 (fwd) 34.04 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::: +:UAG:U A+ G A A:C+::G: +UUU A :C::++G +:: GGUU A U 51121 GUUCUUAUAGUUGAA--GU-ACAACGAUGAGUUUUCAUGUCAUUAG-UCACGGUUAUAGU 51176 >>>>>))))))): 61 CCcgccaucccCA 73 CC :::+ ::::A 51177 CCAUGUGGGAAUA 51189 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2687,sp|AC009140.6|AC009140 Homo sapiens chromosome 16 clone RP11-53K15, complete sequence. ----isReversed: 1 ----hitSequence: GUCCUUGUAGUAUAAUUCAAUACUCUGGUCUUGUAAACCAGAAAUGGAGAAUUCCCUCCCCAGGACA hit 116 : 49977 49911 (rev) 31.09 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::: GUAG:::A+UU A:::C ::GG:CUU UAA:CC::A++ +G::G: U 89197 GUCCUUGUAGUAUAAUUc---AAUACUCUGGUCUUGUAAACCAGAAA-UGGAGAAUUC-- 89250 _>>>>>))))))): 60 UCCcgccaucccCA 73 :C::CC ::::CA 89251 -CCUCCCCAGGACA 89263 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2802,sp|AC009358.6|AC009358 Human Chromosome 7 clone RP11-191E5, complete sequence. ----isReversed: 1 ----hitSequence: UCCUCAUUAGUAUAGUGAUAUCCCUGCCUGUCACGCGGGAGACCAGGGUUCGAUUCCCAGACAAGGAG hit 117 : 167089 167022 (rev) 31.63 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::: :UA::::AGU :::: :C G:CU+U A :C G:AG+ C: GGGUUCGA+U 18036 UCCUCAUUAGUAUAGU----GAUAUCCCUGCCUGUCACGCGGGAGA-CCAGGGUUCGAUU 18090 >>>>>))))))): 61 CCcgccaucccCA 73 CCC :: :::: 18091 CCCAGACAAGGAG 18103 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2881,sp|AC009509.7|AC009509 Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence. ----isReversed: 0 ----hitSequence: ACCCAGAUAGCUCAGUCAGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAAGGUUCAUGUCCCUUUUUGGGUG hit 118 : 104277 104349 (fwd) 57.46 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::::A :UAGCUCAGU+ GUAGAGCAUC:GACUUUUAAUC:GA GGUC : GGUUC+ U 104277 ACCCAGAUAGCUCAGUCAGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAAGGUUCAUGU 104336 >>>>>))))))): 61 CCcgccaucccCA 73 CC : : U:::: 104337 CCCUUUUUGGGUG 104349 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #2974,sp|AC009808.8|AC009808 Homo sapiens chromosome 8, clone RP11-138K8, complete sequence. ----isReversed: 1 ----hitSequence: AGAAAUUUAGGUUAAACAAGACCAAGAGCCUUCAAAGCCCUUAGUAAGUAGACUAUACUUAAUUUCUG hit 119 : 85683 85616 (rev) 27.34 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :G::AU:UAG:U:A+ A:A:CA:: G:CUU +AA:C ::++G +::G:: C A 88123 AGAAAUUUAGGUUAAA-CA-AGACCAAGAGCCUUCAAAGCCCUUAG-UAAGUAGACUA-- 88177 >>>>>))))))): 61 CCcgccaucccCA 73 ::C:::AU::C: 88178 UACUUAAUUUCUG 88190 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3001,sp|AC009946.2|AC009946 Homo sapiens clone RP11-12C17, complete sequence. ----isReversed: 1 ----hitSequence: GCCCAGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUUGAGCCCCACGUUUGGUG hit 120 : 124890 124818 (rev) 51.00 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::: A :UAGCUCAGU+GGUAGAGCAU::GACU UUAAUC::A GGUC :GGGUU GA 44183 GCCCAGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUUGAGC 44242 >>>>>))))))): 61 CCcgccaucccCA 73 CCC: : U ::: 44243 CCCACGUUUGGUG 44255 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3013,sp|AC009960.10|AC009960 Homo sapiens BAC clone RP11-354N12 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AAGAUGUUAGUAAAAUUAUUACAUAACUUUGUCAGAGCGAAUUUAUAGGUUAAAUCCUAUAUGUCUUA hit 121 : 85906 85973 (fwd) 32.02 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::G: :UAG:: A+UU A ::CAU ::+U+U A :: AA +:::GGUU +A+ 85906 AAGAUGUUAGUAAAAUU---AUUACAUAACUUUGUCAGAGCGAAUU-UAUAGGUUAAAU- 85960 >>>>>))))))): 61 CCcgccaucccCA 73 CC:::: :C::A 85961 CCUAUAUGUCUUA 85973 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3013,sp|AC009960.10|AC009960 Homo sapiens BAC clone RP11-354N12 from 2, complete sequence. ----isReversed: 0 ----hitSequence: UUGUAAAUAGUUUAAGUCAAAAUAAAUGAUUUUGACUCAUUAGAUUAUGGUAGACCAUAUUUACCAA hit 122 : 88749 88815 (fwd) 38.85 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 : G:A::UA::U:A+ G A:A::A:::GA+UUU A UC:::AG+ +:::GG U GA 88749 UUGUAAAUAGUUUAA--GUCAAAAUAAAUGAUUUUGACUCAUUAGA-UUAUGG-UAGA-- 88802 >>>>>))))))): 61 CCcgccaucccCA 73 CC:::::U:C :A 88803 CCAUAUUUACCAA 88815 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3013,sp|AC009960.10|AC009960 Homo sapiens BAC clone RP11-354N12 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GGUAAAAUGGCUGAGCAAGCAUUAGACUGUAAAUCUAAAGACAGAGGUUAAGGCCUCUUUUUACCA hit 123 : 91032 91097 (fwd) 52.61 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GG::A::U+GCU:AG :AGCAU::GACU+U+AAUC::AAG+ C:::GGUU + 91032 GGUAAAAUGGCUGAG-----CAAGCAUUAGACUGUAAAUCUAAAGA-CAGAGGUUAAGG- 91084 >>>>>))))))): 61 CCcgccaucccCA 73 CC:::::U::CCA 91085 CCUCUUUUUACCA 91097 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3013,sp|AC009960.10|AC009960 Homo sapiens BAC clone RP11-354N12 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AAGAGAGUCAUAGAAGUUAUGGGAUUGGCUUGAAACCAAUUUCUGGAAGUUCAAUUCCUUCCUUUCUUG hit 124 : 85902 85834 (rev) 29.81 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::G: :GU ::::A+ G ::::+:::G:CUU +AA:C:::+ +G : GUUC+A+U 122082 AAGAGAGUCAUAGAA--GU-UAUGGGAUUGGCUUGAAACCAAUUUC-UGGAAGUUCAAUU 122137 >>>>>))))))): 61 CCcgccaucccCA 73 C : CC: :C:: 122138 CCUUCCUUUCUUG 122150 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3035,sp|AC009994.10|AC009994 Homo sapiens chromosome 17, clone RP11-87N3, complete sequence. ----isReversed: 0 ----hitSequence: AGCACCAUGGCUUAGCUGGUUAAAGCACCUGUCUAGUAAACAGGAGAUCCUGAGUUUCAAUUCCAAUGGUGCCU hit 125 : 122322 122395 (fwd) 43.81 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G:::::U+GCU:AG UGGU A:AGCA:C:G:CU UAA:C:G:AG+UC :G UU AA 122322 AGCACCAUGGCUUAGCUGGUuAAAGCACCUGUCUAGUAAACAGGAGAUCCUGAGUUUCAA 122381 _>>>>>))))))): 60 UCCcgccaucccCA 73 U C: :::::C 122382 UUCCAAUGGUGCCU 122395 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3050,sp|AC010087.3|AC010087 Homo sapiens BAC clone RP11-241M13 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGUUCCAUAGUGUAACAGUUAUCAUGUCUGCUUUACACACUGAAGGUCCUGGGUUCAAACUCCAGUGGAACCA hit 126 : 28032 27960 (rev) 48.77 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 GG:::::UA::: A+ GU A :::+UC G +UU+ A C GAAGGUC::GG UUC+AA 173998 GGUUCCAUAGUGUAAC-AGUuAUCAUGUCUGCUUUACACACUGAAGGUCCUGGGUUCAAA 174056 _>>>>>))))))): 60 UCCcgccaucccCA 73 CC:::::::CCA 174057 CUCCAGUGGAACCA 174070 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3156,sp|AC010253.5|AC010253 Homo sapiens chromosome 5 clone CTC-432B14, complete sequence. ----isReversed: 0 ----hitSequence: GAAGAAGUCAUGGAGGUUAUGGGAUUGGCUUGAAACCAGUCUUUGGGGGUUCAAUUCCUUCCUUUUUCA hit 127 : 23136 23204 (fwd) 30.51 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G:: A:G C:: G GGU ::G +: :G:CUU +AA:C: : +G GGUUC+A+U 23136 GAAGAAG--UCAUGGA-GGUUAUGGGAUUGGCUUGAAACCAGUCUU-UGGGGGUUCAAUU 23191 >>>>>))))))): 61 CCcgccaucccCA 73 CC CC:U ::CA 23192 CCUUCCUUUUUCA 23204 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3156,sp|AC010253.5|AC010253 Homo sapiens chromosome 5 clone CTC-432B14, complete sequence. ----isReversed: 1 ----hitSequence: AAGAUAUUAGUAAAAUUAUUUCAUAACUUUGUCAAAGUUAAGUUAUAGGUUAAGCCCUAUAUAUCUUA hit 128 : 23132 23065 (rev) 42.76 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::G::::UAG : A+UU A : CAU::::+U+U AA::::AAG +:::GG U +A 53309 AAGAUAUUAGUAAAAUU---AUUUCAUAACUUUGUCAAAGUUAAGU-UAUAGG-UUAAGC 53363 >>>>>))))))): 61 CCcgccaucccCA 73 CC:::::::C::A 53364 CCUAUAUAUCUUA 53376 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3204,sp|AC010317.5|AC010317 Homo sapiens chromosome 5 clone CTB-88J14, complete sequence. ----isReversed: 0 ----hitSequence: UCCUCAUCAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACUGGGGUUCGAUUCCCUGAGGAGGAG hit 129 : 109122 109193 (fwd) 45.01 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 ::::: : A::::AGU GGU A:::: :C:G:CU+U A :C:G:AG+ C GGGUUCGA+ 109122 UCCUCAUCAGUAUAGU-GGUgAGUAUCCCCGCCUGUCACGCGGGAGA-CUGGGGUUCGAU 109179 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCCC : ::::: 109180 UCCCUGAGGAGGAG 109193 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3349,sp|AC010513.6|AC010513 Homo sapiens chromosome 19 clone LLNLR-232H11, complete sequence. ----isReversed: 0 ----hitSequence: UAUAUUUUAUAUAUAUAUAAAUAUAUAUAUUUAUAUUAUAUAAAUAUAUAUAUUUAUAUUAUAUAAAUAUAU hit 130 : 16499 16570 (fwd) 25.82 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,.,<<<<<______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgU.cgcgGGUUCgAa 59 :::::U:UA::U: +U A:A:: ::::A+UU+UA U::::A++U +:::::UU + A 16499 UAUAUUUUAUAUAUAU-AU-AAAUAUAUAUAUUUAUAUUAUAUAAAUaUAUAUAUUUAUA 16556 _>>>>>))))))): 60 UCCcgccaucccCA 73 U::::::A::::: 16557 UUAUAUAAAUAUAU 16570 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3365,sp|AC010531.8|AC010531 Homo sapiens chromosome 16 clone RP11-178L8, complete sequence. ----isReversed: 1 ----hitSequence: GCCUCGUUAGCGCAGUAGGCAGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACACGGGGCA hit 131 : 143700 143628 (rev) 67.01 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G:: :::UAGC:CAGU GG AG:GC+UC:G CU +UAA C:GAAGGUCG:G:GUUCGA 31352 GCCUCGUUAGCGCAGUAGGCAGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGC 31411 >>>>>))))))): 61 CCcgccaucccCA 73 C:C:C::: ::CA 31412 CUCACACGGGGCA 31424 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3374,sp|AC010546.10|AC010546 Homo sapiens chromosome 16 clone RP11-50O21, complete sequence. ----isReversed: 0 ----hitSequence: UAUUAAAUUUUAAUUUAAUUAUUUUAAAUUAAAAUUUUAAUUUAAUUAUUUUAAAUUAAAAUUUUAAUUUAAUUA hit 132 : 28655 28729 (fwd) 25.80 bits (((((((,,<<<<_______.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgA 58 :::A::U ::: U U :::AU:::A UUUUAAU:::A+ +U+:::::UU +A 28655 UAUUAAAUUUUAAUUUAAUUauUUUAAAUUAAAAUUUUAAUUUAAUUAUUUUAAAUUAAA 28714 __>>>>>))))))): 59 aUCCcgccaucccCA 73 AU:::::::U::: A 28715 AUUUUAAUUUAAUUA 28729 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3375,sp|AC010547.9|AC010547 Homo sapiens chromosome 16 clone RP11-510M2, complete sequence. ----isReversed: 0 ----hitSequence: GCCCUCUUAGCGCAGUGGGCAGCGCGUCAGUCUCAUAAUCUGAAGGUCCUGAGUUCGAGCCUCAGAGAGGGCA hit 133 : 32420 32492 (fwd) 67.10 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 G::::::UAGC:CAGU GG AG:GC+UC:G CU +UAA C:GAAGGUC::G:GUUCGA 32420 GCCCUCUUAGCGCAGU-GGGcAGCGCGUCAGUCUCAUAAUCUGAAGGUCCUGAGUUCGAG 32478 _>>>>>))))))): 60 UCCcgccaucccCA 73 C:C::::::::CA 32479 CCUCAGAGAGGGCA 32492 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3409,sp|AC010619.7|AC010619 Homo sapiens chromosome 19 clone CTD-3148I10, complete sequence. ----isReversed: 1 ----hitSequence: ACCUGGGUAGCUUAGUUGGUAGAGCAUUGGACUUUUAAUUUGAGGGCCCAGGUUUCAAGUCCCUGUUUGGGUG hit 134 : 121919 121847 (rev) 47.02 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::: :UAGCU:AGUUGGUA:AGCAU ACUUUUAAU A GG C::GG:UUC+A U 57476 ACCUGGGUAGCUUAGUUGGUAGAGCAUUGGACUUUUAAUUUGAGGGCCCAGGUUUCAAGU 57535 >>>>>))))))): 61 CCcgccaucccCA 73 :CC::: ::: 57536 CCCUGUUUGGGUG 57548 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3515,sp|AC010888.12|AC010888 Homo sapiens BAC clone RP11-418N16 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AAUUAAUUAGUAUUAAUUAUAUUAUACUUCUAUUAUAAUUAUUAUAAUUCUAUUAUAAUUAAUUA hit 135 : 38908 38844 (rev) 31.04 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::::A::UA::: + A :::AU:::ACUU UA U:::A+ + +:::::UUC A 152956 AAUUAAUUAGUAUUA-----AUUAUAUUAUACUUCUAUUAUAAUUA-UUAUAAUUCUA-- 153007 >>>>>))))))): 61 CCcgccaucccCA 73 :::::::U::::A 153008 UUAUAAUUAAUUA 153020 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3592,sp|AC011146.10|AC011146 Homo sapiens chromosome 8, clone RP11-2F15, complete sequence. ----isReversed: 1 ----hitSequence: AUAUAUAUAAAUUAUAUAUUAUAUUUAUAUUAUAUAUAAAUUAUAUAUUAUAUUUAUAUUAUAUAUA hit 136 : 84585 84519 (rev) 25.38 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::::AU:UA::U A A A::AU:: : U UUA : ::AA+ +:::::UU A+U 72367 AUAUAUAUAAAUUAU-----AUAUUAUAUUUAUAUUAUAUAUAAAU-UAUAUAUUAUAUU 72420 >>>>>))))))): 61 CCcgccaucccCA 73 ::::::AU::::A 72421 UAUAUUAUAUAUA 72433 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3647,sp|AC011302.3|AC011302 Homo sapiens BAC clone RP11-333E9 from Y, complete sequence. ----isReversed: 1 ----hitSequence: AUUUAUAAAUUUAAAUGAUAAAUUUAAAUUCUAAAUUUAAAAUAUAUAACAUAUAUUUAUAUAUAAAUA hit 137 : 15852 15784 (rev) 26.45 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::::AU: A::U A+ G A A:: U:::A+U U+AAU:::AA+ ::::: + AU 162286 AUUUAUAAAUUUAAA--UG-AUAAAUUUAAAUUCUAAAUUUAAAAU-AUAUAACAUAUAU 162341 >>>>>))))))): 61 CCcgccaucccCA 73 ::::::AU::::A 162342 UUAUAUAUAAAUA 162354 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3701,sp|AC011375.5|AC011375 Homo sapiens chromosome 5 clone CTB-119L1, complete sequence. ----isReversed: 0 ----hitSequence: AUAUAUAUAAUAUAUAUAUUUUUAUAUAUAUAUUAUAUAUAUAUUAUAUAUAUUAUAUAUAUAUUUUAUAUA hit 138 : 82979 83050 (fwd) 25.24 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::::A :UA::: A U U :::AU:::: UU+UA ::::A+ + +:::::UU A+ 82979 AUAUAUAUAAUAUAUAUAUUUUUAUAUAUAUAUUAUAUAUAUAUUA-UAUAUAUUAUAUA 83037 >>>>>))))))): 61 CCcgccaucccCA 73 :::::: U::::A 83038 UAUAUUUUAUAUA 83050 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3763,sp|AC011456.2|AC011456 Homo sapiens chromosome 19 clone CTC-360P9, complete sequence. ----isReversed: 0 ----hitSequence: GUUUCCAUGGUGUAAUGGUGAGCACUCUGGACUCUGAAUCCAGAAAUACAUUCAAAGAAUUAAGAACA hit 139 : 112297 112364 (fwd) 27.86 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,.,<<<<<_____ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgU.cgcgGGUUCgA 58 G:: :U+G:::A+U GGU A:::C ::GGACU U AAUCC::A++U C::: C+A 112297 GUUUCCAUGGUGUAAU-GGUgAGCACUCUGGACUCUGAAUCCAGAAAUaCAUU----CAA 112351 __>>>>>))))))): 59 aUCCcgccaucccCA 73 A :::: ::CA 112352 AG--AAUUAAGAACA 112364 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3766,sp|AC011460.3|AC011460 Homo sapiens chromosome 19 clone CTC-429C10, complete sequence. ----isReversed: 0 ----hitSequence: CUGCAGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUCGUGCCCCAUGUUGGGUG hit 140 : 76075 76147 (fwd) 47.29 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :A :UAGCUCAGU+GGUAGAGCAU::GACU UUAAUC::A GGUC::GGGUUCG 76075 CUGCAGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUCGUGC 76134 >>>>>))))))): 61 CCcgccaucccCA 73 CCC::: U: 76135 CCCAUGUUGGGUG 76147 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3776,sp|AC011470.5|AC011470 Homo sapiens chromosome 19 clone CTC-490M10, complete sequence. ----isReversed: 1 ----hitSequence: AUAUAUUUAUAUAUAAUAUUAAAAUAUAUAUUAAUUAUAUUAAUAUAUUUAUAUAUGAAAAUAUAUAAUGUAUA hit 141 : 91409 91336 (rev) 25.26 bits (((((((,,.<<<<_______.._>>>>,<<<<<_______>>>>>,,,,,<<<<<____ 1 GgggaugUA.GCucAgUUGGU..AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCg 57 ::: AU:UA ::::A+U U A::::AU:::A UU+UA U:::A++ U+:::::U + 65733 AUAUAUUUAuAUAUAAU-AUUaaAAUAUAUAUUAAUUAUAUUAAUAUAUUUAUAUAUGAA 65791 ___>>>>>))))))): 58 AaUCCcgccaucccCA 73 AA ::::::AU :::A 65792 AA-UAUAUAAUGUAUA 65806 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3780,sp|AC011474.6|AC011474 Homo sapiens chromosome 19 clone CTC-525D6, complete sequence. ----isReversed: 0 ----hitSequence: AUAUAUUUAAUAUAUAUUUUAUAUAUAAUAUAUUUAAAAUAUAUAUUAUAUAUAAUAUAUUAUAUAUAAUAUAUUUAAAAUAUAUAUUAUAUA hit 142 : 80079 80171 (fwd) 26.37 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,.............. 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaG.............. 45 ::::A :UA::::A U U ::::A::::A+UU++AAU::::A 80079 AUAUAUUUAAUAUAUAUUUUaUAUAUAAUAUAUUUAAAAUAUAUA-uuauauauaauaua 80137 .........,,,<<<<<_______>>>>>))))))): 46 .........gUcgcgGGUUCgAaUCCcgccaucccCA 73 + +:::: UU +AAU ::::: U::::A 80138 uuauauauaA-UAUAU-UUAAAAU-AUAUAUUAUAUA 80171 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3805,sp|AC011500.7|AC011500 Homo sapiens chromosome 19 clone CTB-60E11, complete sequence. ----isReversed: 1 ----hitSequence: GCUCCAGUGGCGCAAUCGGUUAGCGCGCGGUACUUAUAUGACAGUGCGAGCGGAGCAAUGCCGAGGUUGUGAGUUCGAUCCUCACCUGGAGCA hit 143 : 17084 16992 (rev) 44.91 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,.............. 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaG.............. 45 G:::::GU+GC:CA+U+GGU AG:GC+: G: CUU+UA :C :+ 183347 GCUCCAGUGGCGCAAUCGGUuAGCGCGCGGUACUUAUAUGACAGU-gcgagcggagcaau 183405 ......,,,<<<<<_______>>>>>))))))): 46 ......gUcgcgGGUUCgAaUCCcgccaucccCA 73 GU+G:G:GUUCGA+ C:C:CC:::::CA 183406 gccgagGUUGUGAGUUCGAUCCUCACCUGGAGCA 183439 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3815,sp|AC011510.7|AC011510 Homo sapiens chromosome 19 clone CTD-2195B23, complete sequence. ----isReversed: 1 ----hitSequence: GCCAGGAUAGUUCAGGUGGUAGAGCAUCAGACUUUUAACCUGAGGGUUCAGGGUUCAAGUCUCUGUUUGGGCG hit 144 : 70860 70788 (rev) 50.03 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G:: :UAG:UCAG UGGUAGA:CAUC:G CUUUUAA C:GA GGU+::G GUUC+A U 58543 GCCAGGAUAGUUCAGGUGGUAGAGCAUCAGACUUUUAACCUGAGGGUUCAGGGUUCAAGU 58602 >>>>>))))))): 61 CCcgccaucccCA 73 C C::: ::C 58603 CUCUGUUUGGGCG 58615 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3840,sp|AC011535.7|AC011535 Homo sapiens chromosome 19 clone LLNLR-243C6, complete sequence. ----isReversed: 0 ----hitSequence: AUAUAUAUAAUAUAUAUAUUAUAUAUAUAUAUUAUAUAUAUAAUAUAUAUAUAUUAUAUAUAUAUUAUAUAUA hit 145 : 21443 21515 (fwd) 25.48 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,.,<<<<<______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgU.cgcgGGUUCgAa 59 ::::AU:UA::::A U ::::AU:::: UU+UA ::::AA +U +:::::UU A+ 21443 AUAUAUAUAAUAUAUA-UAUUAUAUAUAUAUAUUAUAUAUAUAAUAUaUAUAUAUUAUAU 21501 _>>>>>))))))): 60 UCCcgccaucccCA 73 ::::::AU::::A 21502 AUAUAUUAUAUAUA 21515 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3840,sp|AC011535.7|AC011535 Homo sapiens chromosome 19 clone LLNLR-243C6, complete sequence. ----isReversed: 1 ----hitSequence: AUAUAUAUAAUAUAUAUAUAAUAUAUAUAUAUUAUAUAUAUAAUAUAUAUAUAUAAUAUAUAUAUUAUAUAUA hit 146 : 21516 21444 (rev) 25.68 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,.,<<<<<______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgU.cgcgGGUUCgAa 59 ::::AU:UA::::A UA::::AU:::: UU+UA ::::AA +U +:::::U A+ 15581 AUAUAUAUAAUAUAUA-UAUAAUAUAUAUAUAUUAUAUAUAUAAUAUaUAUAUAUAAUAU 15639 _>>>>>))))))): 60 UCCcgccaucccCA 73 ::::::AU::::A 15640 AUAUAUUAUAUAUA 15653 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3897,sp|AC011716.7|AC011716 Homo sapiens chromosome 8 clone RP11-65D13, complete sequence. ----isReversed: 1 ----hitSequence: CAAGGUGUAGCUUAACAUAAAGCACCCAGUUUACACCUGGGAAAUUUCAACUCAAUUUGACCACCUGAU hit 147 : 76694 76626 (rev) 27.87 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :G:UGUAGCU:A+ A:AGCA:C:::+UU+ A :::G:A++ + :::: UC+A+ 95634 CAAGGUGUAGCUUAAC-AU-AAAGCACCCAGUUUACACCUGGGAAA-UUUCAACUCAAU- 95689 >>>>>))))))): 61 CCcgccaucccCA 73 :::: CA:C: 95690 UUGACCACCUGAU 95702 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3898,sp|AC011718.2|AC011718 Homo sapiens chromosome 22 clone b2280l11 map 22q11, complete sequence. ----isReversed: 0 ----hitSequence: AAUAUAAUAUAUAAAAUAAUAAUUAAUAUUUUAAAUUAAUUAUUAUUAAUUAAUAUUAAUUAAUAUUA hit 148 : 49087 49154 (fwd) 25.21 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::::: :UA::U:A+ :A::AU:::: UUUUAA::::A+ +U+:::::UU + A 49087 AAUAUAAUAUAUAAAA----UAAUAAUUAAUAUUUUAAAUUAAUUAUUAUUAAUUAAUA- 49141 >>>>>))))))): 61 CCcgccaucccCA 73 :::::: :::::A 49142 UUAAUUAAUAUUA 49154 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3961,sp|AC011944.12|AC011944 Homo sapiens chromosome 15, clone RP11-16K12, complete sequence. ----isReversed: 1 ----hitSequence: GCCCGGCUAGCUCAGUCGGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG hit 149 : 165783 165711 (rev) 68.56 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G::: :UAGCUCAGU+GGUAGAGCAU:GGACU UUAAUCC:A GGUCG:GGGUUCGA 527 GCCCGGCUAGCUCAGUCGGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUCGAGC 586 >>>>>))))))): 61 CCcgccaucccCA 73 CCC:C: :::C 587 CCCACGUUGGGCG 599 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #3969,sp|AC011994.10|AC011994 Homo sapiens BAC clone RP11-50E1 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UCAGUGGUCUAGUGGUUAGGAUUCAGCGCUCCCACCGCCGCAGCCCGGGUUCGAUUCCCGGUCAUGGAA hit 150 : 91742 91674 (rev) 25.74 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 :: :: ::::AGU GGU A:::: : G::CU A ::C : +G C:CGGGUUCGA+ 85192 UCAGUG---GUCUAGU-GGUuAGGAUUCAGCGCUCCCACCGCCGCAG-CCCGGGUUCGAU 85246 _>>>>>))))))): 60 UCCcgccaucccCA 73 UCCCG: :: ::A 85247 UCCCGGUCAUGGAA 85260 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4035,sp|AC012156.14|AC012156 Homo sapiens 12p11-37.2-54.4 BAC RP11-433D24 (Rosewell Park Cancer Institute Human Bac Library) complete sequence. ----isReversed: 1 ----hitSequence: GUUCUUAGAGUUGAAGCACAACAAUGAUUUUUGAUGUCAUUAGUUAUGGUUAUAUCCCAUGUAAGAAUU hit 151 : 90287 90219 (rev) 34.66 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::::U: AG:U A+ G A A:CA::G: +UUU A :C::++G + ::GGUU A+ 71914 GUUCUUAGAGUUGAA--GC-ACAACAAUGAUUUUUGAUGUCAUUAG-UUAUGGUUAUAUC 71969 >>>>>))))))): 61 CCcgccaucccCA 73 CC:: :A::::: 71970 CCAUGUAAGAAUU 71982 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4054,sp|AC012195.9|AC012195 Homo sapiens chromosome 15, clone RP11-44F11, complete sequence. ----isReversed: 0 ----hitSequence: GCACUGCACAGUCAGUCAGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUCAAGCCCCACGUUGGGCG hit 152 : 16717 16789 (fwd) 30.66 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G: : : UCAGU+ GUAGA AU:GGACU UUAAUCC:A GGUCG:GGGUUC+A 16717 GCACUGCACAGUCAGUCAGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUCAAGC 16776 >>>>>))))))): 61 CCcgccaucccCA 73 CCC:C: : :C 16777 CCCACGUUGGGCG 16789 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4105,sp|AC012363.6|AC012363 Homo sapiens BAC clone RP11-438O12 from 2, complete sequence. ----isReversed: 0 ----hitSequence: ACUUUUAAAGAAUUAGAGUUGUCUAUUGGUCUUAGGAACCAAAAACAUUGGUGCAACUCCAAAUAAAAGUA hit 153 : 59844 59914 (fwd) 33.38 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :::::U: A: :: + GU :: :AU:GG:CUU+ A:CC:AA++ C ::GGU C+A U 59844 ACUUUUAAAGAAUUAG-AGUUGUCUAUUGGUCUUAGGAACCAAAAA-CAUUGGUGCAACU 59901 >>>>>))))))): 61 CCcgccaucccCA 73 CC:: :A:::::A 59902 CCAAAUAAAAGUA 59914 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4107,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2, complete sequence. ----isReversed: 0 ----hitSequence: CAAAAUGUAGCUUAACUCAAAGCAUCCGGCUUAUACCCAGAAUAUUUCAGCAUGACCUGAUCAAUUUGA hit 154 : 40365 40433 (fwd) 26.47 bits (((((((,,<<<<____.____>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 :::: UGUAGCU:A+ U A:AGCAUC G:CUU+UA :C GAA + + :::G GA 40365 CAAAAUGUAGCUUAACUc---AAAGCAUCCGGCUUAUACCCAGAAUA-UUUCAGCAUGAC 40420 _>>>>>))))))): 60 UCCcgccaucccCA 73 C::: CA ::::A 40421 -CUGAUCAAUUUGA 40433 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4107,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2, complete sequence. ----isReversed: 0 ----hitSequence: GUUAAGAUGGCAGAGCCCAGCAAUUGCAUAAAUCUUAAAACUUUAUAAUCAGAGGUUCGACUCCUCUUCUUAACA hit 155 : 41992 42066 (fwd) 53.48 bits (((((((,,<<<<____.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgUU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgA 58 G:::A::U+GC: AG + G A :GCAU::: CUU++AA :::A+++UC:::GGUUCGA 41992 GUUAAGAUGGCAGAGCCcAGCaAUUGCAUAAAUCUUAAAACUUUAUAAUCAGAGGUUCGA 42051 __>>>>>))))))): 59 aUCCcgccaucccCA 73 UCC:::::U:::CA 42052 CUCCUCUUCUUAACA 42066 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4107,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGAAAUAUGUCUGACAAAAGAAUUACUUUGAUAGAGUAAAUAAUAGAGAUUAAAUUCCUCUUAUUUCUA hit 156 : 43018 43086 (fwd) 42.67 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :G::AU:U+:CU:A A:AG:AU::::+U++UA ::::AA + +:::G:UU +A+U 43018 AGAAAUAUGUCUGACA----AAAGAAUUACUUUGAUAGAGUAAAUAAUAGAGAUUAAAUU 43073 >>>>>))))))): 61 CCcgccaucccCA 73 :C::::AU::C:A 43074 CCUCUUAUUUCUA 43086 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4107,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2, complete sequence. ----isReversed: 0 ----hitSequence: AGAAAUUUAGGUUAAAUAAGACCAAGGGCCUUCAAAGCCCUUAGUAAGUAAGUCACACUUAAUUUCUG hit 157 : 44268 44335 (fwd) 30.51 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 :G::AU:UAG:U:A+ A:A:CA::GG:CUU +AA:CC::++G +::G:: A 44268 AGAAAUUUAGGUUAA--AUAAGACCAAGGGCCUUCAAAGCCCUUAG-UAAGUAAGUCA-- 44322 >>>>>))))))): 61 CCcgccaucccCA 73 ::C:::AU::C: 44323 CACUUAAUUUCUG 44335 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4107,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2, complete sequence. ----isReversed: 1 ----hitSequence: GGUAAAAUGACUGAGUAAGCGUUAGACUGUAAAUCAAAAGAUGGAGGUCAAGGCCUCCUUUUACCA hit 158 : 44651 44586 (rev) 39.97 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 GG::A::U+ CU:AG :AG +U: GACU+U+AAUC :AAG+ +G::GG UC+A 143198 GGUAAAAUGACUGAG-----UAAGCGUUAGACUGUAAAUCAAAAGA-UGGAGG-UCAAGG 143250 >>>>>))))))): 61 CCcgccaucccCA 73 CC::C::U::CCA 143251 CCUCCUUUUACCA 143263 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4107,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UAGGUUGAAGCCAGUUGAUUAGGGUGUUUAGCUGUUAACUAAAUUUUCAUGGGUUUGAAUUCCACCAAUCUAG hit 159 : 44487 44415 (rev) 32.01 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 ::G :UG A:C: U G U A :G:+U::::CU+UUAA::::A+ UC :GG UU GAA 143362 UAGGUUGAAGCCAGUU-GAUuAGGGUGUUUAGCUGUUAACUAAAUUUUCAUGGGUUUGAA 143420 _>>>>>))))))): 60 UCCcgccaucccCA 73 U CC: CA: C:: 143421 UUCCACCAAUCUAG 143434 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4107,sp|AC012365.6|AC012365 Homo sapiens BAC clone RP11-459C22 from 2, complete sequence. ----isReversed: 1 ----hitSequence: UAGGACAUGGUGUAAUAGGUAGAAUGGAGAAUUUUGAAUUCUCAGGGGUAGGUUCAAUUCCUAUAGUUCUAG hit 160 : 43155 43084 (rev) 44.00 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::G A: U+:: :A+U GGUA: ::+::G:A+UUU AAU:C::AGG :::GGUUC+A+U 144694 UAGGACAUGGUGUAAUAGGUAGAAUGGAGAAUUUUGAAUUCUCAGG-GGUAGGUUCAAUU 144752 >>>>>))))))): 61 CCcgccaucccCA 73 CC::: :U C:: 144753 CCUAUAGUUCUAG 144765 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4167,sp|AC012494.8|AC012494 Homo sapiens BAC clone RP11-312P13 from 2, complete sequence. ----isReversed: 1 ----hitSequence: AUAUAUAUAGUUAUAUAUAAAAAUAUAUAUAUUUUAUAUAUAAAUUAUAUAUUUUAUAUAUAUAUAUAUAUA hit 161 : 131837 131766 (rev) 32.01 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 ::::AU:UA::U: +U A:A::AU:::: UUUUA ::::AA+ U :::::UU + AU 59286 AUAUAUAUAGUUAUAU-AUAAAAAUAUAUAUAUUUUAUAUAUAAAUUAUAUAUUUUAUAU 59344 >>>>>))))))): 61 CCcgccaucccCA 73 ::::::AU::::A 59345 AUAUAUAUAUAUA 59357 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4201,sp|AC012569.18|AC012569 Homo sapiens chromosome , clone RP11-8H2, complete sequence. ----isReversed: 0 ----hitSequence: GACGAGCUAGCUCAGUCGGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUUGAGCCCCAUGUUGGGCA hit 162 : 61606 61678 (fwd) 52.79 bits (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 60 G : A :UAGCUCAGU+GGUAGAGCAU:GGACU UUAAUCC:A GGUC::GGGUU GA 61606 GACGAGCUAGCUCAGUCGGUAGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUUGAGC 61665 >>>>>))))))): 61 CCcgccaucccCA 73 CCC::: U : CA 61666 CCCAUGUUGGGCA 61678 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl_release76/hum02.dat.fasta.gz ----sequence: #4228,sp|AC012618.7|AC012618 Homo sapiens chromosome 19 clone CTD-2666L21, complete sequence. ----isReversed: 0 ----hitSequence: GGCUCUGUGGCUUUGUGGGUUAAAGUACUUGUCUGGCAAACAGGAGAUGCUGGAUUUCAAUCCCAGCAGGGCCU hit 163 : 4620 4693 (fwd) 46.86 bits (((((((,,<<<<_______._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 59 GG: :UGU+:CU: GU GGU A:AG:A: :G:CU+ AA:C: :AG+U ::GG:UU AA 4620 GGCUCUGUGGCUUUGUGGGUuAAAGUACUUGUCUGGCAAACAGGAGAUGCUGGAUUUCAA 4679 _>>>>>))))))): 60 UCCcgccaucccCA 73 U:CC::CA: :CC 4680 UCCCAGCAGGGCCU 4693 ----endhit ----